RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13101
(420 letters)
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding
protein, peripheral golgi membrane protein, phospholipid
exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae}
SCOP: a.5.3.1 c.13.1.1
Length = 296
Score = 189 bits (482), Expect = 2e-57
Identities = 52/208 (25%), Positives = 94/208 (45%), Gaps = 7/208 (3%)
Query: 171 LLKLSLTWRKRHNVDQILQQYEAPP--VVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGF 228
+ + WRK + D ILQ + ++ ++ +H D++ RP+Y +LG +++
Sbjct: 72 MFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEM 131
Query: 229 LKTVGEDGLLKLAMHVCEEGLALT-EEYTRKYSRPITTWSLLIDLEGLNMRHLWRPGVKA 287
K E+ +LK + E + +R + T ++DL+G+++ + +
Sbjct: 132 NKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSV-MSY 190
Query: 288 LLRIIEIVETNYPETLGRVLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGG 347
+ I + YPE +G+ II AP F + L F+D T SK + G+ YQ
Sbjct: 191 VREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFIL-GSSYQKE-- 247
Query: 348 LIDYIEQQYIPDFLGGPCETKLPEGGLL 375
L+ I + +P GG E +GGL
Sbjct: 248 LLKQIPAENLPVKFGGKSEVDESKGGLY 275
Score = 113 bits (284), Expect = 1e-28
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 2/126 (1%)
Query: 50 DYIHRCLGDLTPMQESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQS 109
D + G+L QE L + +K + DSTLLRFL+++ F+++ +E
Sbjct: 17 DALPGTPGNLDSAQEKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFENC 76
Query: 110 LTWRKRHNVDQILQQYEAPP--VVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVG 167
WRK + D ILQ + ++ ++ +H D++ RP+Y +LG +++ K
Sbjct: 77 EKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTS 136
Query: 168 EDGLLK 173
E+ +LK
Sbjct: 137 EERMLK 142
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif,
signaling protein, directed evoluti SEC14, phospholipid
transporter, lipid; HET: PEE; 1.80A {Saccharomyces
cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Length = 320
Score = 186 bits (473), Expect = 8e-56
Identities = 72/355 (20%), Positives = 129/355 (36%), Gaps = 85/355 (23%)
Query: 38 DEHLELEFQLEDDYIHRC--------LGDLTPMQESKLIQFKKQFGYLQKGKLPSDSTLL 89
H + + D Y C G+LT QE L+QF+ + DSTLL
Sbjct: 6 HHHHHMTTSILDTYPQICSPNALPGTPGNLTKEQEEALLQFRSILLEKNYKERLDDSTLL 65
Query: 90 RFLKSKDFNLEKGRESLSQSLTWRKRHNVDQILQQYEAP--------PVVRAYFTGTWHH 141
RFL+++ F++ E ++ WR+ + + I++ YE + + +HH
Sbjct: 66 RFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHH 125
Query: 142 CDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLSLTWRKRHNVDQILQQYEAPPVVRAYF 201
D++ RPLY +LG +++K K E +L+ ++++YE
Sbjct: 126 VDKDGRPLYFAELGGINLKKMYKITTEKQMLR------------NLVKEYEL--FATYRV 171
Query: 202 TGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLALTEEYTRKYSR 261
C R L V+D+KG
Sbjct: 172 PA----CSRRAGYLIETSCTVLDLKGI--------------------------------- 194
Query: 262 PITTWSLLIDLEGLNMRHLWRPGVKALLRIIEIVETNYPETLGRVLIIRAPRVFPILWTL 321
++ + + + + + +I + YPE +G+ II +P F ++ +
Sbjct: 195 --------------SLSNAYHV-LSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKM 239
Query: 322 VSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQYIPDFLGGPCETKLPEGGLLP 376
V F+D T SK + G+ Y+ L+ I + +P GG P
Sbjct: 240 VKPFLDPVTVSKIFIL-GSSYKKE--LLKQIPIENLPVKYGGTSVLHNPNDKFYY 291
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol
biosynthesis, oxidized vitamin E, lipid-binding,
transport, transcription regulation; HET: VTQ; 1.95A
{Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB:
1o6u_A* 1olm_E*
Length = 403
Score = 180 bits (458), Expect = 1e-52
Identities = 66/218 (30%), Positives = 116/218 (53%), Gaps = 13/218 (5%)
Query: 171 LLKLSLTWRKRHNVDQILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLK 230
+L+ + +RK+ ++D I+ P V++ Y +G D + P++ +G +D KG L
Sbjct: 55 MLRKHVEFRKQKDIDNIISWQP-PEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLF 113
Query: 231 TVGEDGLLKLAMHVCEEGLALTEEYTRKYSRPITTWSLLIDLEGLNMRHLWRPGVKALLR 290
+ + LL+ M CE L T K R + T +++ D EGL ++HLW+P V+A
Sbjct: 114 SASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGE 173
Query: 291 IIEIVETNYPETLGRVLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLID 350
+ + E NYPETL R+ +++AP++FP+ + L+ F+ E TR K +V G +++ L+
Sbjct: 174 FLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVL-GANWKEV--LLK 230
Query: 351 YIEQQYIPDFLGG---------PCETKLPEGGLLPFLL 379
+I +P GG C++K+ GG +P
Sbjct: 231 HISPDQVPVEYGGTMTDPDGNPKCKSKINYGGDIPRKY 268
Score = 104 bits (261), Expect = 6e-25
Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Query: 56 LGDLTPMQESKLIQFKKQF-GYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQSLTWRK 114
+GDL+P Q+ L +F++ L P D LLR+L+++ F+L+K L + + +RK
Sbjct: 5 VGDLSPRQKEALAKFRENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRK 64
Query: 115 RHNVDQILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLK 173
+ ++D I+ P V++ Y +G D + P++ +G +D KG L + + LL+
Sbjct: 65 QKDIDNIISWQP-PEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLR 122
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein,
11-CIS-retinal, bothnia dystrophy, acetylation,
cytoplasm, disease mutation; HET: RET; 1.69A {Homo
sapiens} PDB: 3hy5_A*
Length = 316
Score = 140 bits (355), Expect = 1e-38
Identities = 34/207 (16%), Positives = 76/207 (36%), Gaps = 18/207 (8%)
Query: 171 LLKLSLTWRKRH-NVDQILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFL 229
LL+ + +R ++ + L + A + G D+ R + LF + +
Sbjct: 112 LLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEI- 170
Query: 230 KTVGEDGLLKLAMHVCEEGLALTEEYTRKYSRPITTWSLLIDLEGLNMRHLWRPGVKALL 289
D +L+ + E L E T I + ++ + +G M+ L
Sbjct: 171 ---TFDEILQAYCFILE--KLLENEET-----QINGFCIIENFKGFTMQQAASLRTSDLR 220
Query: 290 RIIEIVETNYPETLGRVLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLI 349
+++++++ ++P + I P F + +V F+ + V+ G+D
Sbjct: 221 KMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVH-GDDLSG---FY 276
Query: 350 DYIEQQYIPDFLGGPCETKLPEGGLLP 376
I++ +P GG +G +
Sbjct: 277 QEIDENILPSDFGGTLPK--YDGKAVA 301
Score = 70.2 bits (172), Expect = 1e-13
Identities = 17/122 (13%), Positives = 43/122 (35%), Gaps = 13/122 (10%)
Query: 54 RCLGDLTPMQESKLIQFKK------------QFGYLQKGKLPSDSTLLRFLKSKDFNLEK 101
L + +E + + ++ ++ + LRF++++ FN+ +
Sbjct: 49 DELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGR 108
Query: 102 GRESLSQSLTWRKRH-NVDQILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVK 160
E L + +R ++ + L + A + G D+ R + LF + +
Sbjct: 109 AYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQ 168
Query: 161 GF 162
Sbjct: 169 EI 170
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with
vitamin E deficiency, transport protein; HET: MSE VIV;
1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A*
1oip_A*
Length = 262
Score = 134 bits (339), Expect = 8e-37
Identities = 33/198 (16%), Positives = 74/198 (37%), Gaps = 16/198 (8%)
Query: 171 LLKLSLTWRKRH-NVDQILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFL 229
LLK WR + L +++A + G D + ++++ D K F
Sbjct: 53 LLKNYYKWRAECPEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFT 112
Query: 230 KTVGEDGLLKLAMHVCEEGLALTEEYTRKYSRPITTWSLLIDLEGLNMRHLWRPGVKALL 289
+ ++++ E L + E T + DLEG H ++
Sbjct: 113 A----YDVFRVSLITSE--LIVQEVET-----QRNGIKAIFDLEGWQFSHAFQITPSVAK 161
Query: 290 RIIEIVETNYPETLGRVLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLI 349
+I ++ ++P + + +I P +F +++++ F+ E + + ++ N Q +
Sbjct: 162 KIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQ----SL 217
Query: 350 DYIEQQYIPDFLGGPCET 367
+P GG +
Sbjct: 218 LQHFPDILPLEYGGEEFS 235
Score = 82.7 bits (205), Expect = 4e-18
Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 59 LTPMQESKLIQFKKQFGYLQKGKLP---SDSTLLRFLKSKDFNLEKGRESLSQSLTWRKR 115
++P+ + L +++ P +DS LLRFL+++DF+L+ L WR
Sbjct: 4 MSPLLQPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAE 63
Query: 116 H-NVDQILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGF 162
+ L +++A + G D + ++++ D K F
Sbjct: 64 CPEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVF 111
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.7 bits (131), Expect = 4e-08
Identities = 78/459 (16%), Positives = 147/459 (32%), Gaps = 149/459 (32%)
Query: 9 TEG-ADYERVESPI------LCHDGESIQGSHVTSRDEHLEL---EFQLEDDY-----IH 53
TEG A + +P L + ++ S V D+ L L EF E+ Y IH
Sbjct: 45 TEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF--ENCYLEGNDIH 102
Query: 54 RCLGDLTPMQESKLIQFKKQF-GYLQ-------KGKLPSDSTLLRFLKSKD------FNL 99
L ++ L++ K+ Y+ S+S L R + + F
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG- 161
Query: 100 EKGRESLSQ--SLTWRKRHNVDQILQQYEA-PPVVRAYFTGTWHHCDREMRPL----YLF 152
G Q + + +++ Y+ +V + +R +F
Sbjct: 162 --G-----QGNTDDY-----FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 153 KLGVMDVKGFLKTV----GEDGLLKLSLTWRKRHNVDQILQ--QYEA--------PPVVR 198
G +++ +L+ +D LL + ++ + ++Q Y P +R
Sbjct: 210 TQG-LNILEWLENPSNTPDKDYLLSIPISC----PLIGVIQLAHYVVTAKLLGFTPGELR 264
Query: 199 AYFTGTWHHCDREMRPLYLFKLGV---------MDVKGFLKTVGEDGLLKLAMHVCEEGL 249
+Y G H G+ + F +V + + + + G+
Sbjct: 265 SYLKGATGHSQ-----------GLVTAVAIAETDSWESFFVSVRK--AITVLFFI---GV 308
Query: 250 ALTEEYTRKYSRPITTWSLLIDL----EG-----LNMRHLWRPGVKALLRIIEIVETNYP 300
E Y P S+L D EG L++ +L + + + + ++ P
Sbjct: 309 RCYEAYPNTSLPP----SILEDSLENNEGVPSPMLSISNLTQ---EQVQDYVNKTNSHLP 361
Query: 301 ETLGRVLI--IRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQYIP 358
+V I + + V +G QS GL + + P
Sbjct: 362 AG-KQVEISLVNGAKNL--------------------VVSGP-PQSLYGLNLTLRKAKAP 399
Query: 359 DFLGGPCETKLPEGGLLPFLLPFCRRKLSKILSRGLGVG 397
G ++++P F RKL K +R L V
Sbjct: 400 S---GLDQSRIP----------FSERKL-KFSNRFLPVA 424
Score = 54.7 bits (131), Expect = 4e-08
Identities = 50/332 (15%), Positives = 91/332 (27%), Gaps = 136/332 (40%)
Query: 125 YEAPPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLSLTWRKRHNV 184
Y+ + W+ D + Y GF S+ +N
Sbjct: 1636 YKTSKAAQD----VWNRADNHFKDTY----------GF------------SILDIVINN- 1668
Query: 185 DQILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKL---GVMDVKGFLKTVGEDGLLKLA 241
P + +F G RE +F+ G + + K + E
Sbjct: 1669 ---------PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEH-STSYT 1718
Query: 242 MHVCEEGLALTEEYTRKYSRP-ITTWSLLIDLEGLNMRHLWRPGVK-------------- 286
+ L+ T ++T +P +T L G+
Sbjct: 1719 FRSEKGLLSAT-QFT----QPALTLMEKAA------FEDLKSKGLIPADATFAGHSLGEY 1767
Query: 287 -ALL---RIIEIVETNYPETLGRVLIIR-------APR------------VFPILWTLVS 323
AL ++ I E+L V+ R PR + P + +
Sbjct: 1768 AALASLADVMSI------ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP--GRVAA 1819
Query: 324 TFIDET---------TRSKFLVYAGNDYQSAGGLIDYIEQQYIPDFLGGPCETKLPEGGL 374
+F E R+ +LV N Y QQY+ G + + L
Sbjct: 1820 SFSQEALQYVVERVGKRTGWLVEIVN-YNVEN-------QQYV---AAG--DLR----AL 1862
Query: 375 LPFLLPFCRRKLSKILSRGLGVGNINLWDIVK 406
++ +L+ + + I DI++
Sbjct: 1863 ---------DTVTNVLNF-IKLQKI---DIIE 1881
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 6e-06
Identities = 40/224 (17%), Positives = 72/224 (32%), Gaps = 62/224 (27%)
Query: 1 LSLIDKNWTEGADYERVESPILCHDGESIQGSHVTSR----DEHLELEFQLEDDY-IHR- 54
LSLI W + + + H ++ S +LEL+ +LE++Y +HR
Sbjct: 392 LSLI---WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 55 -----------CLGDLTPMQESKLI-QFKKQFGY-LQKGKLPSDSTL-------LRFLKS 94
DL P + G+ L+ + P TL RFL+
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSH---IGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 95 KDFNLEKGRESLSQSLTWRKRHNVDQILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKL 154
K + S W ++ LQQ + + Y + E
Sbjct: 506 K---IRH------DSTAWNASGSILNTLQQLK---FYKPYICD--NDPKYERL------- 544
Query: 155 GVMDVKGFLKTVGEDGLLKLSLTWRKRH-NVDQILQQYEAPPVV 197
V + FL + E+ + ++ ++ +I E +
Sbjct: 545 -VNAILDFLPKIEENLI-------CSKYTDLLRIALMAEDEAIF 580
Score = 39.8 bits (92), Expect = 0.002
Identities = 50/365 (13%), Positives = 92/365 (25%), Gaps = 116/365 (31%)
Query: 22 LCHDGESIQGSHVTSRDEHLELEFQLEDDYIHRCLGDLTPMQ------------------ 63
L +D + +V+ +L+L + L +L P +
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKL---------RQALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 64 --ESKLIQFKKQFG--YLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQSLTWRKRHNVD 119
S +Q K F +L S T+L L+ L + + T R H+ +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ----KL---LYQIDPNWTSRSDHSSN 222
Query: 120 QILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKLGVMD-------VKGFLKTVGEDGLL 172
L+ + +R Y L V+ F +
Sbjct: 223 IKLRIHSIQAELRRLL----------KSKPYENCLLVLLNVQNAKAWNAF------NLSC 266
Query: 173 KLSLTWRKRHNVDQILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTV 232
K+ LT R + D + +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISL------------------------DHHSMTLTPDE 302
Query: 233 GEDGLLKLAMHVCEEGLALTEEYTRKYSRPITTWSLLIDLEGLNMRHL------WR-PGV 285
+ LLK ++ L E + P + + ++R W+
Sbjct: 303 VKSLLLKYLDCRPQD---LPRE-VLTTN-P-----RRLSIIAESIRDGLATWDNWKHVNC 352
Query: 286 KALLRIIEI-VETNYPETLGR-----------VLIIRAPRVFPILWTLVSTFIDETTRSK 333
L IIE + P + I + ++W V +K
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI--PTILLSLIWFDVIKSDVMVVVNK 410
Query: 334 FLVYA 338
Y+
Sbjct: 411 LHKYS 415
Score = 37.9 bits (87), Expect = 0.007
Identities = 60/403 (14%), Positives = 111/403 (27%), Gaps = 136/403 (33%)
Query: 1 LSLIDKNWTEGADY-----ERVESP------------------ILCH--DGESIQ----G 31
L ID NWT +D+ R+ S +L + + ++
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 32 SH--VTSRDEHLELEFQLEDDYIHRCLGD----LTPMQESKLIQFKKQFGYLQKGKLPSD 85
+T+R + + +F H L LTP E K + K + LP +
Sbjct: 266 CKILLTTRFKQV-TDFLSAATTTHISLDHHSMTLTP-DEVKSL-LLKYLD-CRPQDLPRE 321
Query: 86 ---------STLLRFLKSKDFNLEKGR-ESLSQSLTWRKRHNVDQILQQYEAPPVVRAYF 135
S + ++ ++ + ++ L E P R F
Sbjct: 322 VLTTNPRRLSIIAESIRD-----GLATWDNWKHVNCDKLTTIIESSLNVLE-PAEYRKMF 375
Query: 136 -------------TGT----WHHCDRE-----MRPLYLFKLGVMDVKGFLKTVGEDGLLK 173
T W + + L+ + L K ++ L+
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-PSIYLE 434
Query: 174 LSLTWRKR---HNVDQILQQYE----------APPVVRAYFTGTWH---H---CDR---- 210
L + H I+ Y PP + YF H H +
Sbjct: 435 LKVKLENEYALHR--SIVDHYNIPKTFDSDDLIPPYLDQYF--YSHIGHHLKNIEHPERM 490
Query: 211 -EMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLALTEEYTRKYSRPITTWSLL 269
R ++L ++ K ++ A + L ++ + Y I
Sbjct: 491 TLFRMVFL-DFRFLEQK--IRHDS------TAWNASGSILNTLQQL-KFYKPYIC----- 535
Query: 270 IDLEGLNMRHLWRPGVKALLRIIEIVETNYPETLGRVLIIRAP 312
D + R V A+L + +E N +I +
Sbjct: 536 -DNDPKYERL-----VNAILDFLPKIEEN---------LICSK 563
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.142 0.440
Gapped
Lambda K H
0.267 0.0629 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,695,047
Number of extensions: 404142
Number of successful extensions: 667
Number of sequences better than 10.0: 1
Number of HSP's gapped: 638
Number of HSP's successfully gapped: 17
Length of query: 420
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 324
Effective length of database: 4,021,377
Effective search space: 1302926148
Effective search space used: 1302926148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.7 bits)