RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13101
(420 letters)
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF),
middle domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 199
Score = 143 bits (362), Expect = 1e-41
Identities = 61/192 (31%), Positives = 101/192 (52%), Gaps = 12/192 (6%)
Query: 194 PPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLALTE 253
P V++ Y +G D + P++ +G +D KG L + + LL+ M CE L
Sbjct: 2 PEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECA 61
Query: 254 EYTRKYSRPITTWSLLIDLEGLNMRHLWRPGVKALLRIIEIVETNYPETLGRVLIIRAPR 313
T K R + T +++ D EGL ++HLW+P V+A + + E NYPETL R+ +++AP+
Sbjct: 62 HQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPK 121
Query: 314 VFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQYIPDFLGG---------P 364
+FP+ + L+ F+ E TR K +V N + L+ +I +P GG
Sbjct: 122 LFPVAYNLIKPFLSEDTRKKIMVLGANWKEV---LLKHISPDQVPVEYGGTMTDPDGNPK 178
Query: 365 CETKLPEGGLLP 376
C++K+ GG +P
Sbjct: 179 CKSKINYGGDIP 190
Score = 51.2 bits (122), Expect = 3e-08
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 128 PPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLSLTWRKRH 182
P V++ Y +G D + P++ +G +D KG L + + LL+ + +
Sbjct: 2 PEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELL 56
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of
phosphatidylinositol transfer protein sec14p {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 203
Score = 135 bits (341), Expect = 2e-38
Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 5/186 (2%)
Query: 191 YEAPPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLA 250
Y+ P++ ++ +H D++ RP+Y +LG +++ K E+ +LK + E +
Sbjct: 1 YDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQ 60
Query: 251 LT-EEYTRKYSRPITTWSLLIDLEGLNMRHLWRPGVKALLRIIEIVETNYPETLGRVLII 309
+R + T ++DL+G+++ + + + I + YPE +G+ II
Sbjct: 61 YRLPACSRAAGHLVETSCTIMDLKGISISSAYSV-MSYVREASYISQNYYPERMGKFYII 119
Query: 310 RAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQYIPDFLGGPCETKL 369
AP F + L F+D T SK + + + L+ I + +P GG E
Sbjct: 120 NAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKE---LLKQIPAENLPVKFGGKSEVDE 176
Query: 370 PEGGLL 375
+GGL
Sbjct: 177 SKGGLY 182
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 185
Score = 94.7 bits (235), Expect = 2e-23
Identities = 27/172 (15%), Positives = 67/172 (38%), Gaps = 15/172 (8%)
Query: 196 VVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLALTEEY 255
+++A + G D + ++++ D K F + ++++ E L + E
Sbjct: 5 LLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVF----TAYDVFRVSLITSE--LIVQEVE 58
Query: 256 TRKYSRPITTWSLLIDLEGLNMRHLWRPGVKALLRIIEIVETNYPETLGRVLIIRAPRVF 315
T + DLEG H ++ +I ++ ++P + + +I P +F
Sbjct: 59 T-----QRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIF 113
Query: 316 PILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQYIPDFLGGPCET 367
+++++ F+ E + + ++ N Q + +P GG +
Sbjct: 114 HAVFSMIKPFLTEKIKERIHMHGNNYKQ----SLLQHFPDILPLEYGGEEFS 161
Score = 32.3 bits (73), Expect = 0.054
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 130 VVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGF 162
+++A + G D + ++++ D K F
Sbjct: 5 LLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVF 37
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol
transfer protein sec14p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 71.0 bits (174), Expect = 5e-16
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 55 CLGDLTPMQESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQSLTWRK 114
G+L QE L + +K + DSTLLRFL+++ F+++ +E WRK
Sbjct: 22 TPGNLDSAQEKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRK 81
Query: 115 RHNVDQILQQY 125
+ D ILQ +
Sbjct: 82 DYGTDTILQDF 92
Score = 26.7 bits (59), Expect = 1.6
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 171 LLKLSLTWRKRHNVDQILQQY 191
+ + WRK + D ILQ +
Sbjct: 72 MFENCEKWRKDYGTDTILQDF 92
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF),
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 67.9 bits (166), Expect = 4e-15
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 56 LGDLTPMQESKLIQFKKQFG-YLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQSLTWRK 114
+GDL+P Q+ L +F++ L P D LLR+L+++ F+L+K L + + +RK
Sbjct: 5 VGDLSPRQKEALAKFRENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRK 64
Query: 115 RHNVDQIL 122
+ ++D I+
Sbjct: 65 QKDIDNII 72
Score = 26.3 bits (58), Expect = 1.7
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 171 LLKLSLTWRKRHNVDQIL 188
+L+ + +RK+ ++D I+
Sbjct: 55 MLRKHVEFRKQKDIDNII 72
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 48.2 bits (115), Expect = 2e-08
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 64 ESKLIQFKKQFGYLQKGKLP---SDSTLLRFLKSKDFNLEKGRESLSQSLTWRKRH 116
+ L +++ P +DS LLRFL+++DF+L+ L WR
Sbjct: 1 QPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAEC 56
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo
sapiens) [TaxId: 9606]}
Length = 65
Score = 26.7 bits (59), Expect = 0.91
Identities = 8/17 (47%), Positives = 15/17 (88%)
Query: 111 TWRKRHNVDQILQQYEA 127
+R+R N+D++LQ++EA
Sbjct: 48 NYRRRFNIDEVLQEWEA 64
Score = 26.7 bits (59), Expect = 0.91
Identities = 8/17 (47%), Positives = 15/17 (88%)
Query: 177 TWRKRHNVDQILQQYEA 193
+R+R N+D++LQ++EA
Sbjct: 48 NYRRRFNIDEVLQEWEA 64
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.142 0.440
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,665,286
Number of extensions: 80590
Number of successful extensions: 205
Number of sequences better than 10.0: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 13
Length of query: 420
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 332
Effective length of database: 1,199,356
Effective search space: 398186192
Effective search space used: 398186192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.8 bits)