Query psy13103
Match_columns 162
No_of_seqs 224 out of 788
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 19:36:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13103.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13103hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03015 Sterile: Male sterili 99.9 1.6E-27 3.5E-32 165.8 6.2 75 74-148 20-94 (94)
2 cd09071 FAR_C C-terminal domai 99.9 4.5E-25 9.8E-30 152.4 7.4 73 74-146 20-92 (92)
3 KOG1221|consensus 99.9 1.2E-24 2.7E-29 187.4 8.3 89 74-162 379-467 (467)
4 PF03015 Sterile: Male sterili 99.9 2.1E-22 4.7E-27 139.9 3.2 71 3-73 14-84 (94)
5 cd09071 FAR_C C-terminal domai 99.8 7.1E-21 1.5E-25 131.3 5.2 72 5-77 16-87 (92)
6 PLN02503 fatty acyl-CoA reduct 99.8 8E-19 1.7E-23 156.6 7.1 76 74-149 520-604 (605)
7 PLN02996 fatty acyl-CoA reduct 99.8 7.6E-19 1.7E-23 153.7 6.7 74 74-147 411-491 (491)
8 KOG1221|consensus 99.6 7.7E-16 1.7E-20 133.1 4.1 68 6-73 376-443 (467)
9 PLN02996 fatty acyl-CoA reduct 99.5 9.9E-15 2.1E-19 127.9 5.7 67 5-71 407-479 (491)
10 PLN02503 fatty acyl-CoA reduct 99.4 6.6E-14 1.4E-18 125.2 4.6 65 7-71 518-590 (605)
11 PTZ00374 dihydroxyacetone phos 90.7 0.18 3.9E-06 48.2 2.6 50 101-150 428-484 (1108)
12 COG3945 Uncharacterized conser 40.5 25 0.00054 27.4 2.3 35 126-160 114-148 (189)
13 PF05208 ALG3: ALG3 protein; 33.5 22 0.00047 30.7 1.1 25 122-146 19-46 (368)
14 KOG2762|consensus 33.1 24 0.00051 30.5 1.3 23 122-144 47-72 (429)
15 PF07377 DUF1493: Protein of u 27.1 31 0.00068 24.2 0.9 16 119-134 53-68 (111)
16 TIGR00092 GTP-binding protein 24.5 86 0.0019 27.0 3.3 67 5-71 262-335 (368)
17 PF04244 DPRP: Deoxyribodipyri 22.0 71 0.0015 25.4 2.1 58 66-124 136-198 (224)
18 PF05182 Fip1: Fip1 motif; In 21.7 46 0.001 19.9 0.8 19 119-137 22-40 (45)
19 PF04244 DPRP: Deoxyribodipyri 20.7 88 0.0019 24.9 2.4 53 6-59 141-198 (224)
20 COG4479 Uncharacterized protei 20.5 36 0.00077 22.4 0.1 32 39-72 39-72 (74)
No 1
>PF03015 Sterile: Male sterility protein; InterPro: IPR004262 This family represents the C-terminal region of the male sterility protein in a number of organisms. The Arabidopsis thaliana male sterility 2 (MS2) protein is involved in male gametogenesis. The MS2 protein shows sequence similarity to a jojoba protein (also a member of this group) that converts wax fatty acids to fatty alcohols. It has been suggested that a possible function of the MS2 protein may be as a fatty acyl reductase in the formation of pollen wall substances [].; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process
Probab=99.94 E-value=1.6e-27 Score=165.81 Aligned_cols=75 Identities=41% Similarity=0.864 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHhhccccccccceEEEecccHHHHHhhCChhhhccccccCCCCCHHHHHHHHHHHHHHHHhcC
Q psy13103 74 FLRLLKIYSKLTKAQYTLSYFSLRSWTWKNANVIDLWTRLSDKDQELFFFDVAQLDWDHYCKALLLGLRVYLVKD 148 (162)
Q Consensus 74 ~~~l~k~~~ki~~~~~~l~~Ft~~eW~F~~~n~~~L~~~ls~~D~~~F~fD~~~idW~~Y~~~~~~Girkyllke 148 (162)
+|+++|+++|+++++++++||+++||+|+|+|+.+|++.|+|+|+++|+||+++|||++|+.+|++|+|+|++||
T Consensus 20 kp~~~k~~~ki~~~~~~~~~F~~~eW~F~~~n~~~L~~~l~~~D~~~F~fD~~~idW~~Y~~~~~~G~rkyllke 94 (94)
T PF03015_consen 20 KPRMVKIYRKIRKALEVLEYFTTNEWIFDNDNTRRLWERLSPEDREIFNFDIRSIDWEEYFRNYIPGIRKYLLKE 94 (94)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhCceeecchHHHHHHHhCchhcCceecCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>cd09071 FAR_C C-terminal domain of fatty acyl CoA reductases. C-terminal domain of fatty acyl CoA reductases, a family of SDR-like proteins. SDRs or short-chain dehydrogenases/reductases are Rossmann-fold NAD(P)H-binding proteins. Many proteins in this FAR_C family may function as fatty acyl-CoA reductases (FARs), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as the biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. The function of this C-terminal domain is unclear.
Probab=99.92 E-value=4.5e-25 Score=152.40 Aligned_cols=73 Identities=45% Similarity=0.879 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHhhccccccccceEEEecccHHHHHhhCChhhhccccccCCCCCHHHHHHHHHHHHHHHHh
Q psy13103 74 FLRLLKIYSKLTKAQYTLSYFSLRSWTWKNANVIDLWTRLSDKDQELFFFDVAQLDWDHYCKALLLGLRVYLV 146 (162)
Q Consensus 74 ~~~l~k~~~ki~~~~~~l~~Ft~~eW~F~~~n~~~L~~~ls~~D~~~F~fD~~~idW~~Y~~~~~~Girkyll 146 (162)
+|+++++++|+++++++++||++++|+|+++|+.+|++.|+|+||++|+||+++|||++|+.+|++|+|+|++
T Consensus 20 ~~~~~~~~~k~~~~~~~~~~Ft~~~w~F~~~n~~~L~~~l~~~Dr~~F~fD~~~idW~~Y~~~~~~G~r~yll 92 (92)
T cd09071 20 KPRLLKLYRKIHKLLDLLEYFTTNEWRFDNDNTRALWERLSEEDRELFNFDIRSIDWDDYFENYIPGLRKYLL 92 (92)
T ss_pred ChHHHHHHHHHHHHHHHhhccccCeEEeeCcHHHHHHHHCCHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999985
No 3
>KOG1221|consensus
Probab=99.91 E-value=1.2e-24 Score=187.41 Aligned_cols=89 Identities=43% Similarity=0.752 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHHHhhccccccccceEEEecccHHHHHhhCChhhhccccccCCCCCHHHHHHHHHHHHHHHHhcCCCCCH
Q psy13103 74 FLRLLKIYSKLTKAQYTLSYFSLRSWTWKNANVIDLWTRLSDKDQELFFFDVAQLDWDHYCKALLLGLRVYLVKDGIHTL 153 (162)
Q Consensus 74 ~~~l~k~~~ki~~~~~~l~~Ft~~eW~F~~~n~~~L~~~ls~~D~~~F~fD~~~idW~~Y~~~~~~Girkyllke~~~~l 153 (162)
+|+++|+|+||+++.++++||+.++|+|+++|+.+|++.||++|+++|+||+.++||++|+..|+.|+|+|++||++++|
T Consensus 379 k~~~~k~~~ki~~~~~~l~~f~~~~w~Fd~~n~~~L~~~~~~~d~~~f~fd~~~ldW~ey~~~~i~G~r~~llKe~~e~l 458 (467)
T KOG1221|consen 379 KPRLVKLYRKIHKLVKLLEPFSLFKWIFDNKNTEKLREKMSEEDKRLFNFDMKQLDWEEYFNRHLLGLRKYLLKESPESL 458 (467)
T ss_pred ChhhhHHHHHHHHHHHhhhhheeceEEecCccHHHHHHhCCHHHHhhcCCCcccCCHHHHHHHHHHHHHHHHhcCChhhh
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC
Q psy13103 154 PAARRKWQR 162 (162)
Q Consensus 154 ~~ar~~~~~ 162 (162)
|+||++++|
T Consensus 459 ~~~r~~~kr 467 (467)
T KOG1221|consen 459 PQARKRLKR 467 (467)
T ss_pred HHHHHhhcC
Confidence 999999986
No 4
>PF03015 Sterile: Male sterility protein; InterPro: IPR004262 This family represents the C-terminal region of the male sterility protein in a number of organisms. The Arabidopsis thaliana male sterility 2 (MS2) protein is involved in male gametogenesis. The MS2 protein shows sequence similarity to a jojoba protein (also a member of this group) that converts wax fatty acids to fatty alcohols. It has been suggested that a possible function of the MS2 protein may be as a fatty acyl reductase in the formation of pollen wall substances [].; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process
Probab=99.85 E-value=2.1e-22 Score=139.94 Aligned_cols=71 Identities=35% Similarity=0.724 Sum_probs=68.0
Q ss_pred ccccccchhHHHHHHHHHHHhccccccccceeEecCCChHHHHhhcCcccccceeccccccchhhhhhhhh
Q psy13103 3 LNNNEEELELLKIYSKLTKAQYTLSYFSLRSWTWKNANVIDLWTRLSDKDQDLFFFDVAQLDWDHYCTSAP 73 (162)
Q Consensus 3 ~~~~g~kp~l~k~~~ki~~~~~~l~yF~~~~W~F~~~n~~~L~~~l~~~D~~~F~fd~~~i~W~~Y~~~~p 73 (162)
|+-.|+||+|+|+|+||++++++++||++++|+|+++|+.+|++.|+++|+++|+||++++||++|+.++.
T Consensus 14 ~~l~g~kp~~~k~~~ki~~~~~~~~~F~~~eW~F~~~n~~~L~~~l~~~D~~~F~fD~~~idW~~Y~~~~~ 84 (94)
T PF03015_consen 14 LRLFGQKPRMVKIYRKIRKALEVLEYFTTNEWIFDNDNTRRLWERLSPEDREIFNFDIRSIDWEEYFRNYI 84 (94)
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHHHHHhCceeecchHHHHHHHhCchhcCceecCCCCCCCHHHHHHHHH
Confidence 34579999999999999999999999999999999999999999999999999999999999999999883
No 5
>cd09071 FAR_C C-terminal domain of fatty acyl CoA reductases. C-terminal domain of fatty acyl CoA reductases, a family of SDR-like proteins. SDRs or short-chain dehydrogenases/reductases are Rossmann-fold NAD(P)H-binding proteins. Many proteins in this FAR_C family may function as fatty acyl-CoA reductases (FARs), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as the biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. The function of this C-terminal domain is unclear.
Probab=99.82 E-value=7.1e-21 Score=131.34 Aligned_cols=72 Identities=38% Similarity=0.727 Sum_probs=68.1
Q ss_pred ccccchhHHHHHHHHHHHhccccccccceeEecCCChHHHHhhcCcccccceeccccccchhhhhhhhhhHHH
Q psy13103 5 NNEEELELLKIYSKLTKAQYTLSYFSLRSWTWKNANVIDLWTRLSDKDQDLFFFDVAQLDWDHYCTSAPFLRL 77 (162)
Q Consensus 5 ~~g~kp~l~k~~~ki~~~~~~l~yF~~~~W~F~~~n~~~L~~~l~~~D~~~F~fd~~~i~W~~Y~~~~p~~~l 77 (162)
-.|++|+++++++|+++++++++||++++|.|+++|+.+|++.|+++|+++|+||++.+||++|+.++ .|.+
T Consensus 16 l~g~~~~~~~~~~k~~~~~~~~~~Ft~~~w~F~~~n~~~L~~~l~~~Dr~~F~fD~~~idW~~Y~~~~-~~G~ 87 (92)
T cd09071 16 LLGRKPRLLKLYRKIHKLLDLLEYFTTNEWRFDNDNTRALWERLSEEDRELFNFDIRSIDWDDYFENY-IPGL 87 (92)
T ss_pred HhCCChHHHHHHHHHHHHHHHhhccccCeEEeeCcHHHHHHHHCCHHHHHhCCCCCCCCCHHHHHHHH-HHHH
Confidence 35999999999999999999999999999999999999999999999999999999999999999998 3443
No 6
>PLN02503 fatty acyl-CoA reductase 2
Probab=99.76 E-value=8e-19 Score=156.60 Aligned_cols=76 Identities=22% Similarity=0.372 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHH--------HhhccccccccceEEEecccHHHHHhhCChhhhccccccCCCCCHHHHHHH-HHHHHHHH
Q psy13103 74 FLRLLKIYSKLT--------KAQYTLSYFSLRSWTWKNANVIDLWTRLSDKDQELFFFDVAQLDWDHYCKA-LLLGLRVY 144 (162)
Q Consensus 74 ~~~l~k~~~ki~--------~~~~~l~~Ft~~eW~F~~~n~~~L~~~ls~~D~~~F~fD~~~idW~~Y~~~-~~~Girky 144 (162)
+|++++.+++++ +++++++|||+++|.|+|+|+++|++.|+++||++|+||++.|||++|+.+ |++|+|+|
T Consensus 520 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~ft~~~w~F~~~n~~~L~~~ms~~Dr~~F~~D~~~idW~~Y~~~~~i~G~rky 599 (605)
T PLN02503 520 DRKLSQKLENICAKSVEQAKYLASIYEPYTFYGGRFDNSNTQRLMERMSEEEKAEFGFDVGSIDWRDYITNVHIPGLRRH 599 (605)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhheeCeEEEechHHHHHHHhCCHHHhhccCCCcCCCCHHHHHHHhhhhHHHHH
Confidence 467888887554 499999999999999999999999999999999999999999999999997 99999999
Q ss_pred HhcCC
Q psy13103 145 LVKDG 149 (162)
Q Consensus 145 llke~ 149 (162)
++|+.
T Consensus 600 ~lk~~ 604 (605)
T PLN02503 600 VMKGR 604 (605)
T ss_pred HhccC
Confidence 99984
No 7
>PLN02996 fatty acyl-CoA reductase
Probab=99.76 E-value=7.6e-19 Score=153.73 Aligned_cols=74 Identities=18% Similarity=0.332 Sum_probs=70.6
Q ss_pred hHHHHHHHHHH---HHhhccccccccceEEEecccHHHHHhhCChhh---hccccccCCCCCHHHHHHH-HHHHHHHHHh
Q psy13103 74 FLRLLKIYSKL---TKAQYTLSYFSLRSWTWKNANVIDLWTRLSDKD---QELFFFDVAQLDWDHYCKA-LLLGLRVYLV 146 (162)
Q Consensus 74 ~~~l~k~~~ki---~~~~~~l~~Ft~~eW~F~~~n~~~L~~~ls~~D---~~~F~fD~~~idW~~Y~~~-~~~Girkyll 146 (162)
+|+++|+++|+ ++++++++|||+++|.|+++|+.+|++.||++| |++|+||++.|||++|+.+ |++|+|+|++
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~w~f~~~n~~~l~~~~~~~d~~d~~~f~~d~~~~~w~~y~~~~~~~g~~~y~~ 490 (491)
T PLN02996 411 GDKYTDLNRKIKLVMRLVDLYKPYVFFKGIFDDTNTEKLRIKRKETGKEEADMFDFDPKSIDWEDYMTNVHIPGLVKYVL 490 (491)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhccccceEEEccHHHHHHHHHCCccccccccEeccCcccCCHHHHHHHhhHHHHHHHhc
Confidence 48999999999 777999999999999999999999999999955 9999999999999999999 9999999998
Q ss_pred c
Q psy13103 147 K 147 (162)
Q Consensus 147 k 147 (162)
|
T Consensus 491 k 491 (491)
T PLN02996 491 K 491 (491)
T ss_pred C
Confidence 7
No 8
>KOG1221|consensus
Probab=99.59 E-value=7.7e-16 Score=133.15 Aligned_cols=68 Identities=35% Similarity=0.620 Sum_probs=66.2
Q ss_pred cccchhHHHHHHHHHHHhccccccccceeEecCCChHHHHhhcCcccccceeccccccchhhhhhhhh
Q psy13103 6 NEEELELLKIYSKLTKAQYTLSYFSLRSWTWKNANVIDLWTRLSDKDQDLFFFDVAQLDWDHYCTSAP 73 (162)
Q Consensus 6 ~g~kp~l~k~~~ki~~~~~~l~yF~~~~W~F~~~n~~~L~~~l~~~D~~~F~fd~~~i~W~~Y~~~~p 73 (162)
.|+||.++|+|+||+++.++++||++++|+|+++|+.+|+++|+++|+++|+||++++||++|+..+-
T Consensus 376 ~g~k~~~~k~~~ki~~~~~~l~~f~~~~w~Fd~~n~~~L~~~~~~~d~~~f~fd~~~ldW~ey~~~~i 443 (467)
T KOG1221|consen 376 LGKKPRLVKLYRKIHKLVKLLEPFSLFKWIFDNKNTEKLREKMSEEDKRLFNFDMKQLDWEEYFNRHL 443 (467)
T ss_pred hCCChhhhHHHHHHHHHHHhhhhheeceEEecCccHHHHHHhCCHHHHhhcCCCcccCCHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999998884
No 9
>PLN02996 fatty acyl-CoA reductase
Probab=99.52 E-value=9.9e-15 Score=127.88 Aligned_cols=67 Identities=16% Similarity=0.298 Sum_probs=63.3
Q ss_pred ccccchhHHHHHHHH---HHHhccccccccceeEecCCChHHHHhhcCccc---ccceeccccccchhhhhhh
Q psy13103 5 NNEEELELLKIYSKL---TKAQYTLSYFSLRSWTWKNANVIDLWTRLSDKD---QDLFFFDVAQLDWDHYCTS 71 (162)
Q Consensus 5 ~~g~kp~l~k~~~ki---~~~~~~l~yF~~~~W~F~~~n~~~L~~~l~~~D---~~~F~fd~~~i~W~~Y~~~ 71 (162)
..|+||+++|+|+|+ ++++++++||++++|.|+++|+.+|++.|+++| +++|+||++.+||++|+.+
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~w~f~~~n~~~l~~~~~~~d~~d~~~f~~d~~~~~w~~y~~~ 479 (491)
T PLN02996 407 PKRYGDKYTDLNRKIKLVMRLVDLYKPYVFFKGIFDDTNTEKLRIKRKETGKEEADMFDFDPKSIDWEDYMTN 479 (491)
T ss_pred hhccChHHHHHHHHHHHHHHHHHHhhccccceEEEccHHHHHHHHHCCccccccccEeccCcccCCHHHHHHH
Confidence 457999999999999 677999999999999999999999999999955 9999999999999999998
No 10
>PLN02503 fatty acyl-CoA reductase 2
Probab=99.44 E-value=6.6e-14 Score=125.22 Aligned_cols=65 Identities=22% Similarity=0.412 Sum_probs=61.7
Q ss_pred ccchhHHHHHHHHHH--------HhccccccccceeEecCCChHHHHhhcCcccccceeccccccchhhhhhh
Q psy13103 7 EEELELLKIYSKLTK--------AQYTLSYFSLRSWTWKNANVIDLWTRLSDKDQDLFFFDVAQLDWDHYCTS 71 (162)
Q Consensus 7 g~kp~l~k~~~ki~~--------~~~~l~yF~~~~W~F~~~n~~~L~~~l~~~D~~~F~fd~~~i~W~~Y~~~ 71 (162)
|++|++++.++|+++ ++++++||++++|.|+++|+.+|++.|+++|+++|+||++.+||++|+.+
T Consensus 518 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ft~~~w~F~~~n~~~L~~~ms~~Dr~~F~~D~~~idW~~Y~~~ 590 (605)
T PLN02503 518 SSDRKLSQKLENICAKSVEQAKYLASIYEPYTFYGGRFDNSNTQRLMERMSEEEKAEFGFDVGSIDWRDYITN 590 (605)
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHhhheeCeEEEechHHHHHHHhCCHHHhhccCCCcCCCCHHHHHHH
Confidence 589999999986655 99999999999999999999999999999999999999999999999997
No 11
>PTZ00374 dihydroxyacetone phosphate acyltransferase; Provisional
Probab=90.72 E-value=0.18 Score=48.20 Aligned_cols=50 Identities=20% Similarity=0.363 Sum_probs=36.5
Q ss_pred EecccHHHHHhhCChhh--hcccc-ccCCCCCHHHHHHHHH----HHHHHHHhcCCC
Q psy13103 101 WKNANVIDLWTRLSDKD--QELFF-FDVAQLDWDHYCKALL----LGLRVYLVKDGI 150 (162)
Q Consensus 101 F~~~n~~~L~~~ls~~D--~~~F~-fD~~~idW~~Y~~~~~----~Girkyllke~~ 150 (162)
|...=...|...++.+- +-..+ +|..+|||+.|+..++ .|+.+|++|++.
T Consensus 428 ~~~~~y~~ll~~~~~~~~~~~~~~~~~~~~i~W~~y~~~~~~~~l~~l~~~v~~~~~ 484 (1108)
T PTZ00374 428 FNVALYHSLLRRVTSDATLRPLHPYIALVEVDWDAYVKVIAQAVLEHLARQIFRSPF 484 (1108)
T ss_pred ccHHHHHHHHHHHhhcccccchHhhhHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33334455666554332 33444 6999999999999999 999999999976
No 12
>COG3945 Uncharacterized conserved protein [Function unknown]
Probab=40.53 E-value=25 Score=27.37 Aligned_cols=35 Identities=20% Similarity=0.129 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHh
Q psy13103 126 AQLDWDHYCKALLLGLRVYLVKDGIHTLPAARRKW 160 (162)
Q Consensus 126 ~~idW~~Y~~~~~~Girkyllke~~~~l~~ar~~~ 160 (162)
+..+-.+|...|+.|++++|.||+.+-.|-|++-+
T Consensus 114 ~~~~~i~~A~~y~~likrHIdkEdnvlfp~a~~~~ 148 (189)
T COG3945 114 SKDDVIDYAVAYLNLIKRHIDKEDNVLFPFAESTL 148 (189)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 34466789999999999999999999999988754
No 13
>PF05208 ALG3: ALG3 protein; InterPro: IPR007873 The formation of N-glycosidic linkages of glycoproteins involves the ordered assembly of the common Glc3Man9GlcNAc2 core-oligosaccharide on the lipid carrier dolichyl pyrophosphate. Whereas early mannosylation steps occur on the cytoplasmic side of the endoplasmic reticulum with GDP-Man as donor, the final reactions from Man5GlcNAc2-PP-Dol to Man9GlcNAc2-PP-Dol on the lumenal side use Dol-P-Man []. The ALG3 gene encodes the Dol-P-Man:Man5GlcNAc2-PP-Dol mannosyltransferase.; GO: 0016758 transferase activity, transferring hexosyl groups, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=33.48 E-value=22 Score=30.68 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=20.5
Q ss_pred cccCCCCCHHHHHHH---HHHHHHHHHh
Q psy13103 122 FFDVAQLDWDHYCKA---LLLGLRVYLV 146 (162)
Q Consensus 122 ~fD~~~idW~~Y~~~---~~~Girkyll 146 (162)
..-.++|||..|++. +..|-+.|-.
T Consensus 19 ~VpYTEIDw~aYMqqv~~~~~Ge~DYs~ 46 (368)
T PF05208_consen 19 KVPYTEIDWKAYMQQVEGFLNGERDYSK 46 (368)
T ss_pred eccCccccHHHHHHHHHHHHcCcccHHH
Confidence 355789999999998 7889888844
No 14
>KOG2762|consensus
Probab=33.09 E-value=24 Score=30.55 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=19.4
Q ss_pred cccCCCCCHHHHHHH---HHHHHHHH
Q psy13103 122 FFDVAQLDWDHYCKA---LLLGLRVY 144 (162)
Q Consensus 122 ~fD~~~idW~~Y~~~---~~~Girky 144 (162)
....++|||..|++. ++-|.+.|
T Consensus 47 kV~YTEIDw~AYM~qve~fl~G~~dY 72 (429)
T KOG2762|consen 47 KVPYTEIDWKAYMEQVEGFLNGELDY 72 (429)
T ss_pred ecCcceecHHHHHHHHHHHHhcccch
Confidence 467899999999987 67788888
No 15
>PF07377 DUF1493: Protein of unknown function (DUF1493); InterPro: IPR010862 This family consists of several bacterial proteins of around 115 residues in length. Members of this family are largely found in Salmonella and Yersinia species and several have been described as being putative cytoplasmic proteins. The function of this family is unknown.
Probab=27.07 E-value=31 Score=24.15 Aligned_cols=16 Identities=38% Similarity=0.760 Sum_probs=15.3
Q ss_pred ccccccCCCCCHHHHH
Q psy13103 119 ELFFFDVAQLDWDHYC 134 (162)
Q Consensus 119 ~~F~fD~~~idW~~Y~ 134 (162)
+.|++|++.+||..|+
T Consensus 53 ~~F~Vd~~~f~~~~YF 68 (111)
T PF07377_consen 53 ERFNVDLSDFDFDRYF 68 (111)
T ss_pred HHhCCCcCccCHHHcc
Confidence 6799999999999999
No 16
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=24.50 E-value=86 Score=27.00 Aligned_cols=67 Identities=18% Similarity=0.192 Sum_probs=54.3
Q ss_pred ccc-cch-hHHHHHHHHHHHhccccccccc-----eeEecCCChHHHHhhcCcccccceeccccccchhhhhhh
Q psy13103 5 NNE-EEL-ELLKIYSKLTKAQYTLSYFSLR-----SWTWKNANVIDLWTRLSDKDQDLFFFDVAQLDWDHYCTS 71 (162)
Q Consensus 5 ~~g-~kp-~l~k~~~ki~~~~~~l~yF~~~-----~W~F~~~n~~~L~~~l~~~D~~~F~fd~~~i~W~~Y~~~ 71 (162)
..| ..| .+-++.+..++.+....|||.+ .|+.....+..=-....=+|-+..-.-...++|+++...
T Consensus 262 ~~g~~~s~~~~~ii~~~y~lL~L~sFfT~g~~EvRaWti~~G~~Ap~AAG~IHsDfekgFIrAEV~~yddl~~~ 335 (368)
T TIGR00092 262 KLGLTESAGLNIIIRARYKLLLLSFFFTGGKEEVRAWTRKGGWAAPQAAGIIHTDFETGFIAAEVISWDDFIYK 335 (368)
T ss_pred HcCCcccchHHHHHHHHHHHhCeeEEEcCCCceeEEeecCCCCchhHhcCCcccccccCceEEEEecHHHHHHc
Confidence 355 446 7888999999999999999976 499999887766677777788887777888999998764
No 17
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=21.95 E-value=71 Score=25.44 Aligned_cols=58 Identities=17% Similarity=0.153 Sum_probs=25.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhhcccc-----ccccceEEEecccHHHHHhhCChhhhcccccc
Q psy13103 66 DHYCTSAPFLRLLKIYSKLTKAQYTLS-----YFSLRSWTWKNANVIDLWTRLSDKDQELFFFD 124 (162)
Q Consensus 66 ~~Y~~~~p~~~l~k~~~ki~~~~~~l~-----~Ft~~eW~F~~~n~~~L~~~ls~~D~~~F~fD 124 (162)
.+++...+.++|-..|+...+=.++|- | +-+.|.|+.+|-.++-...+......|.-|
T Consensus 136 ~~~~~~~k~~~Me~FYR~mRkr~~ILmd~~g~P-~GGkWnfD~eNRk~~p~~~~~P~~~~~~~d 198 (224)
T PF04244_consen 136 AEWFEGRKRLRMEYFYREMRKRFGILMDEDGKP-VGGKWNFDAENRKKLPKGIPIPEPPRFEPD 198 (224)
T ss_dssp HHHHTT-SS--HHHHHHHHHHHHTTTE-ETTEE-GGGSS--GGGS-------TTS---------
T ss_pred HHHHccCCceeHHHHHHHHHHHcCccccCCCCc-CCCcCCCChhhccCCCCCCCCCCCCCCCCC
Confidence 334454444788888877777554444 4 558999999999999888765555444444
No 18
>PF05182 Fip1: Fip1 motif; InterPro: IPR007854 This short motif is about 40 amino acids in length and is found in the Fip1 protein that is a component of a Saccharomyces cerevisiae pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase []. This region of Fip1 is needed for the interaction with the Yth1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor [].
Probab=21.70 E-value=46 Score=19.87 Aligned_cols=19 Identities=26% Similarity=0.795 Sum_probs=16.0
Q ss_pred ccccccCCCCCHHHHHHHH
Q psy13103 119 ELFFFDVAQLDWDHYCKAL 137 (162)
Q Consensus 119 ~~F~fD~~~idW~~Y~~~~ 137 (162)
.-||+...+..|..|+...
T Consensus 22 DyFNYGf~E~tW~~Y~~kq 40 (45)
T PF05182_consen 22 DYFNYGFNEETWREYCKKQ 40 (45)
T ss_pred hhcCCCCCHHHHHHHHHHH
Confidence 4589999999999998764
No 19
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=20.69 E-value=88 Score=24.90 Aligned_cols=53 Identities=17% Similarity=0.159 Sum_probs=26.3
Q ss_pred cccchhHHHHHHHHHHHhcccc-----ccccceeEecCCChHHHHhhcCcccccceecc
Q psy13103 6 NEEELELLKIYSKLTKAQYTLS-----YFSLRSWTWKNANVIDLWTRLSDKDQDLFFFD 59 (162)
Q Consensus 6 ~g~kp~l~k~~~ki~~~~~~l~-----yF~~~~W~F~~~n~~~L~~~l~~~D~~~F~fd 59 (162)
.+++++|-.-|+...+=.++|- + ..+.|.|+.+|-.++-..........|.-|
T Consensus 141 ~~k~~~Me~FYR~mRkr~~ILmd~~g~P-~GGkWnfD~eNRk~~p~~~~~P~~~~~~~d 198 (224)
T PF04244_consen 141 GRKRLRMEYFYREMRKRFGILMDEDGKP-VGGKWNFDAENRKKLPKGIPIPEPPRFEPD 198 (224)
T ss_dssp T-SS--HHHHHHHHHHHHTTTE-ETTEE-GGGSS--GGGS-------TTS---------
T ss_pred cCCceeHHHHHHHHHHHcCccccCCCCc-CCCcCCCChhhccCCCCCCCCCCCCCCCCC
Confidence 3577889999998888888776 4 678999999999999888766555555555
No 20
>COG4479 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.53 E-value=36 Score=22.39 Aligned_cols=32 Identities=19% Similarity=0.522 Sum_probs=21.4
Q ss_pred CChHHHHhhcCcccccceeccccccc--hhhhhhhh
Q psy13103 39 ANVIDLWTRLSDKDQDLFFFDVAQLD--WDHYCTSA 72 (162)
Q Consensus 39 ~n~~~L~~~l~~~D~~~F~fd~~~i~--W~~Y~~~~ 72 (162)
++...+.+-| ++...|.++|+.+| |++|+...
T Consensus 39 ~Df~~is~YL--E~~a~f~~~m~~FDeiwe~Yle~~ 72 (74)
T COG4479 39 DDFHEISDYL--ETNADFLFNMSVFDEIWEEYLEHL 72 (74)
T ss_pred ccHHHHHHHH--HhcCCcccchhhHHHHHHHHHHHh
Confidence 3344343333 56788999999888 99997643
Done!