Query psy13103
Match_columns 162
No_of_seqs 224 out of 788
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 19:36:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13103.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13103hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eo2_A Adult MALE hypothalamus 25.3 19 0.00067 22.6 0.5 21 111-131 48-71 (71)
2 3l91_A Acyl-homoserine lactone 19.8 68 0.0023 23.3 2.7 28 106-146 89-116 (170)
3 2jxf_A NS4B(40-69), genome pol 18.8 92 0.0032 16.0 2.2 13 130-142 11-23 (30)
4 2xqo_A Cellulosome enzyme, doc 10.8 1.6E+02 0.0053 22.2 2.5 69 88-160 110-184 (243)
5 4aj5_A SKA1, spindle and kinet 10.2 72 0.0025 21.0 0.4 20 2-21 25-44 (91)
6 4a3n_A Transcription factor SO 9.1 97 0.0033 18.2 0.7 17 106-122 37-53 (71)
7 3fgh_A Transcription factor A, 8.7 1.1E+02 0.0036 18.0 0.8 18 105-122 32-49 (67)
8 1hry_A Human SRY; DNA, DNA-bin 8.1 1.4E+02 0.0046 17.9 1.1 17 105-121 38-54 (76)
9 1fm2_A Glutaryl 7-aminocephalo 8.0 4.1E+02 0.014 19.0 3.8 17 131-147 101-117 (169)
10 2cx6_A Hypothetical protein YH 8.0 2.3E+02 0.008 17.9 2.3 31 12-50 14-44 (90)
No 1
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.34 E-value=19 Score=22.64 Aligned_cols=21 Identities=24% Similarity=0.609 Sum_probs=16.3
Q ss_pred hhCChhhhccc---cccCCCCCHH
Q psy13103 111 TRLSDKDQELF---FFDVAQLDWD 131 (162)
Q Consensus 111 ~~ls~~D~~~F---~fD~~~idW~ 131 (162)
+.|++++...| ++|+++|-|.
T Consensus 48 ~~LT~eEi~~FaRLdIDP~TITw~ 71 (71)
T 2eo2_A 48 STLTEEEVRKFARLNIDPATITWQ 71 (71)
T ss_dssp TTCCHHHHHHHHHTCCCSTTCCCC
T ss_pred ccCCHHHHhhceecccCccceeeC
Confidence 57888887554 7999999883
No 2
>3l91_A Acyl-homoserine lactone acylase PVDQ subunit ALPH; pyoverdine, NTN hydrolase, quorum sensing, ZY hydrolase; HET: OCA; 1.66A {Pseudomonas aeruginosa} PDB: 2wyb_A* 2wyd_A* 2wyc_A 2wye_A* 3l94_A* 3src_A* 3srb_A* 3sra_A*
Probab=19.75 E-value=68 Score=23.34 Aligned_cols=28 Identities=11% Similarity=0.306 Sum_probs=20.5
Q ss_pred HHHHHhhCChhhhccccccCCCCCHHHHHHHHHHHHHHHHh
Q psy13103 106 VIDLWTRLSDKDQELFFFDVAQLDWDHYCKALLLGLRVYLV 146 (162)
Q Consensus 106 ~~~L~~~ls~~D~~~F~fD~~~idW~~Y~~~~~~Girkyll 146 (162)
..+.++.++++.| .+++.|+.|+..||-
T Consensus 89 a~~~~~~l~~~~r-------------~~l~aYa~GvNayl~ 116 (170)
T 3l91_A 89 LQAFWQAQTPAVR-------------QLLEGYAAGFNRFLR 116 (170)
T ss_dssp HHHHHHTSCHHHH-------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHH-------------HHHHHHHHHHHHHHh
Confidence 4445556666544 678999999999993
No 3
>2jxf_A NS4B(40-69), genome polyprotein; membrane associated segment, acetylation, apoptosis, ATP- binding, capsid protein, cytoplasm, endoplasmic reticulum; NMR {Synthetic}
Probab=18.81 E-value=92 Score=16.02 Aligned_cols=13 Identities=15% Similarity=0.544 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHH
Q psy13103 130 WDHYCKALLLGLR 142 (162)
Q Consensus 130 W~~Y~~~~~~Gir 142 (162)
|..-+.+++.||+
T Consensus 11 W~khMwNfvSGIQ 23 (30)
T 2jxf_A 11 WAKHMWNFISGIQ 23 (30)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777888899985
No 4
>2xqo_A Cellulosome enzyme, dockerin type I; hydrolase; HET: MSE CTR; 1.40A {Clostridium thermocellum}
Probab=10.76 E-value=1.6e+02 Score=22.17 Aligned_cols=69 Identities=16% Similarity=0.276 Sum_probs=50.6
Q ss_pred hccccccccceEEEecccHHHHHhhCChhh-hccccccCCCCCHHHHHHHHHHHHHHHHh-----cCCCCCHHHHHHHh
Q psy13103 88 QYTLSYFSLRSWTWKNANVIDLWTRLSDKD-QELFFFDVAQLDWDHYCKALLLGLRVYLV-----KDGIHTLPAARRKW 160 (162)
Q Consensus 88 ~~~l~~Ft~~eW~F~~~n~~~L~~~ls~~D-~~~F~fD~~~idW~~Y~~~~~~Girkyll-----ke~~~~l~~ar~~~ 160 (162)
+-++.+|.+-+=-|.|.|- +-|+|.+ -++|.+|..+-|.-+-...--.|||++|. ||..+.-+-+|.-+
T Consensus 110 aHAyGplQTAeTAfan~np----~fMpE~nVPEM~QydftEsNFYDvgIS~HMGIRk~lHFa~~akekysG~dv~R~sl 184 (243)
T 2xqo_A 110 SHAFGPLQTAETAYANANP----NYMPEHNVPEMHQYDFTEYNFYDVGISVHMGIRHFLHFARLAKEKYSGRDIARHGL 184 (243)
T ss_dssp GCEETTTTEEGGGSBTSCT----TSCCCCSCTTSCCCBCCHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCTHHHHHHHH
T ss_pred cccccchHHHHHHHhhcCc----ccCcccCchhhheeccccccceeeeehhhhhHHHHHHHHHHHHhhcchHHHHHHhh
Confidence 4567777777767777664 3577766 48899999988887777778899999974 67777766666543
No 5
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=10.17 E-value=72 Score=20.98 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=14.8
Q ss_pred CccccccchhHHHHHHHHHH
Q psy13103 2 ELNNNEEELELLKIYSKLTK 21 (162)
Q Consensus 2 ~~~~~g~kp~l~k~~~ki~~ 21 (162)
+||+.|+-|.+..+-+||..
T Consensus 25 ~Lr~~gqdP~lk~~L~Kig~ 44 (91)
T 4aj5_A 25 SLRNCGQEPTLKTVLNKIGD 44 (91)
T ss_dssp HHHHHHHCHHHHHHHHHHHH
T ss_pred HHHhcccChhHHHHHHHHHH
Confidence 58899999998855555543
No 6
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=9.09 E-value=97 Score=18.19 Aligned_cols=17 Identities=18% Similarity=0.391 Sum_probs=12.8
Q ss_pred HHHHHhhCChhhhcccc
Q psy13103 106 VIDLWTRLSDKDQELFF 122 (162)
Q Consensus 106 ~~~L~~~ls~~D~~~F~ 122 (162)
+-..|..||+++++.|.
T Consensus 37 lg~~Wk~ls~~eK~~y~ 53 (71)
T 4a3n_A 37 LGKSWKALTLAEKRPFV 53 (71)
T ss_dssp HHHHHHHSCHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHH
Confidence 34678899999987653
No 7
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=8.70 E-value=1.1e+02 Score=17.96 Aligned_cols=18 Identities=39% Similarity=0.833 Sum_probs=13.6
Q ss_pred cHHHHHhhCChhhhcccc
Q psy13103 105 NVIDLWTRLSDKDQELFF 122 (162)
Q Consensus 105 n~~~L~~~ls~~D~~~F~ 122 (162)
.+-..|..||+++|..|.
T Consensus 32 ~lg~~Wk~ls~~eK~~y~ 49 (67)
T 3fgh_A 32 TVKENWKNLSDSEKELYI 49 (67)
T ss_dssp HHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHhhCCHHHHHHHH
Confidence 344568999999987764
No 8
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=8.09 E-value=1.4e+02 Score=17.88 Aligned_cols=17 Identities=18% Similarity=0.366 Sum_probs=13.1
Q ss_pred cHHHHHhhCChhhhccc
Q psy13103 105 NVIDLWTRLSDKDQELF 121 (162)
Q Consensus 105 n~~~L~~~ls~~D~~~F 121 (162)
-+-.+|..||+++|+.|
T Consensus 38 ~lg~~Wk~ls~~eK~~y 54 (76)
T 1hry_A 38 QLGYQWKMLTEAEKWPF 54 (76)
T ss_dssp HHHHHHHTCCHHHHHHH
T ss_pred HHHhHHHhCCHHHHHHH
Confidence 44567899999998765
No 9
>1fm2_A Glutaryl 7-aminocephalosporanic acid acylase; cephalosporin acylase, antibiotics, penicillin acylase, N- terminal hydrolase; 2.00A {Brevundimonas diminuta} SCOP: d.153.1.2 PDB: 1ghd_A 3jtq_A 3jtr_A 2adv_A 2ae3_A 2ae5_A 2ae4_A 1or0_A 1jw0_A 1jvz_A 1gk1_A 1gk0_A
Probab=7.98 E-value=4.1e+02 Score=19.05 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhc
Q psy13103 131 DHYCKALLLGLRVYLVK 147 (162)
Q Consensus 131 ~~Y~~~~~~Girkyllk 147 (162)
..+++.|+.||..||-.
T Consensus 101 r~~l~aYa~GVNayl~~ 117 (169)
T 1fm2_A 101 RANLDAFAAGINAYAQQ 117 (169)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 47899999999999964
No 10
>2cx6_A Hypothetical protein YHCO; barstar, ribonuclease inhibitor, RSGI, structural genomics; 2.43A {Escherichia coli} SCOP: c.9.1.1
Probab=7.96 E-value=2.3e+02 Score=17.94 Aligned_cols=31 Identities=13% Similarity=0.172 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhccccccccceeEecCCChHHHHhhcCc
Q psy13103 12 LLKIYSKLTKAQYTLSYFSLRSWTWKNANVIDLWTRLSD 50 (162)
Q Consensus 12 l~k~~~ki~~~~~~l~yF~~~~W~F~~~n~~~L~~~l~~ 50 (162)
.-.+|+.+.+..+.-.||. .|..+||+.|+.
T Consensus 14 ~~~f~~~~~~~~~~p~~fG--------~NlDAL~D~Lt~ 44 (90)
T 2cx6_A 14 QEDFYRDFSQTFGLAKDKV--------RDLDSLWDVLMN 44 (90)
T ss_dssp HHHHHHHHHHHTTCCTTSC--------SSHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCchhhC--------CCHHHHHHHHcc
Confidence 3457788888888888885 569999999985
Done!