Query psy13103
Match_columns 162
No_of_seqs 224 out of 788
Neff 7.3
Searched_HMMs 13730
Date Fri Aug 16 19:36:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13103.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13103hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zs8a2 d.19.1.1 (A:1-180) Cla 15.0 40 0.0029 22.6 2.2 17 130-146 155-172 (180)
2 d1onqa2 d.19.1.1 (A:7-183) CD1 13.5 46 0.0034 22.1 2.2 18 129-146 151-169 (177)
3 d1neza2 d.19.1.1 (A:1-181) Cla 12.9 49 0.0036 22.0 2.2 17 130-146 156-173 (181)
4 d1oz2a1 b.34.9.3 (A:204-313) L 12.4 47 0.0034 20.6 1.8 11 127-137 2-12 (110)
5 d1sxje1 a.80.1.1 (E:256-354) R 11.6 48 0.0035 20.5 1.6 30 128-160 2-31 (99)
6 d1hyrc2 d.19.1.1 (C:0-180) Cla 11.3 73 0.0053 21.3 2.7 20 129-148 156-176 (181)
7 d2qgma1 c.150.1.3 (A:33-445) S 11.2 1.4E+02 0.01 22.5 4.7 79 75-160 84-170 (413)
8 d2clyb1 f.53.1.1 (B:4-123) ATP 10.3 66 0.0048 20.4 2.0 31 59-89 44-74 (120)
9 d2cx6a1 c.9.1.1 (A:1-90) Hypot 10.2 79 0.0058 18.9 2.3 31 12-50 14-44 (90)
10 d3frua2 d.19.1.1 (A:1-178) Fc 10.1 70 0.0051 21.4 2.2 17 130-146 153-170 (178)
No 1
>d1zs8a2 d.19.1.1 (A:1-180) Class I MHC, alpha-1 and alpha-2 domains {Mouse (Mus musculus), H-2M10 [TaxId: 10090]}
Probab=14.98 E-value=40 Score=22.63 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=14.0
Q ss_pred HHHHHHH-HHHHHHHHHh
Q psy13103 130 WDHYCKA-LLLGLRVYLV 146 (162)
Q Consensus 130 W~~Y~~~-~~~Girkyll 146 (162)
|..|++. |+..+++||-
T Consensus 155 ~k~yle~~Ci~wLkkyL~ 172 (180)
T d1zs8a2 155 WRTYLKGECTERFLRCLD 172 (180)
T ss_dssp HHHHHHTHHHHHHHHHHH
T ss_pred hhchhcCccHHHHHHHHH
Confidence 5678886 9999999974
No 2
>d1onqa2 d.19.1.1 (A:7-183) CD1, alpha-1 and alpha-2 domains {Human (Homo sapiens), CD1a [TaxId: 9606]}
Probab=13.53 E-value=46 Score=22.13 Aligned_cols=18 Identities=6% Similarity=-0.370 Sum_probs=14.6
Q ss_pred CHHHHHHH-HHHHHHHHHh
Q psy13103 129 DWDHYCKA-LLLGLRVYLV 146 (162)
Q Consensus 129 dW~~Y~~~-~~~Girkyll 146 (162)
.|..|+.+ |+..+++||-
T Consensus 151 ~~k~yL~~~Cv~~Lk~yL~ 169 (177)
T d1onqa2 151 ITHNLLSDTCPRFILGLLD 169 (177)
T ss_dssp HHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHhCccHHHHHHHHH
Confidence 57778876 8999999964
No 3
>d1neza2 d.19.1.1 (A:1-181) Class I MHC, alpha-1 and alpha-2 domains {Mouse (Mus musculus), tla(c), H-2 class [TaxId: 10090]}
Probab=12.94 E-value=49 Score=22.01 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=14.6
Q ss_pred HHHHHHH-HHHHHHHHHh
Q psy13103 130 WDHYCKA-LLLGLRVYLV 146 (162)
Q Consensus 130 W~~Y~~~-~~~Girkyll 146 (162)
+..|++. |+..+++||-
T Consensus 156 ~k~yl~~~C~~~L~kyL~ 173 (181)
T d1neza2 156 RRTYLEGPCKDSLLRYLE 173 (181)
T ss_dssp HHHHHHTHHHHHHHHHHH
T ss_pred HHHHHhChhHHHHHHHHH
Confidence 6789885 9999999985
No 4
>d1oz2a1 b.34.9.3 (A:204-313) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.42 E-value=47 Score=20.60 Aligned_cols=11 Identities=18% Similarity=0.607 Sum_probs=8.9
Q ss_pred CCCHHHHHHHH
Q psy13103 127 QLDWDHYCKAL 137 (162)
Q Consensus 127 ~idW~~Y~~~~ 137 (162)
.+||.+|+...
T Consensus 2 ~F~W~~YL~~~ 12 (110)
T d1oz2a1 2 CWSWESYLEEQ 12 (110)
T ss_dssp CCCHHHHHHHH
T ss_pred ccChHHHHHHh
Confidence 57999999863
No 5
>d1sxje1 a.80.1.1 (E:256-354) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.63 E-value=48 Score=20.48 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHh
Q psy13103 128 LDWDHYCKALLLGLRVYLVKDGIHTLPAARRKW 160 (162)
Q Consensus 128 idW~~Y~~~~~~Girkyllke~~~~l~~ar~~~ 160 (162)
-||+.|+.+-+..|- -..++.+|.+.|.++
T Consensus 2 pdWe~~i~~ia~~I~---~eqsp~~L~~iR~~l 31 (99)
T d1sxje1 2 PDWIIVIHKLTRKIV---KERSVNSLIECRAVL 31 (99)
T ss_dssp CHHHHHHHHHHHHHH---HCCSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH---HcCCHHHHHHHHHHH
Confidence 379888776554432 233456777777654
No 6
>d1hyrc2 d.19.1.1 (C:0-180) Class I MHC homolog {Human (Homo sapiens), Mic-a [TaxId: 9606]}
Probab=11.34 E-value=73 Score=21.33 Aligned_cols=20 Identities=35% Similarity=0.325 Sum_probs=15.6
Q ss_pred CHHHHHHH-HHHHHHHHHhcC
Q psy13103 129 DWDHYCKA-LLLGLRVYLVKD 148 (162)
Q Consensus 129 dW~~Y~~~-~~~Girkyllke 148 (162)
.+..|++. |+..+++||-.-
T Consensus 156 ~~k~yle~~Ci~~LkkyL~~G 176 (181)
T d1hyrc2 156 THYHAMHADCLQELRRYLKSG 176 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhHhchhHHHHHHHHhcC
Confidence 35678876 999999999754
No 7
>d2qgma1 c.150.1.3 (A:33-445) Succinoglycan biosynthesis protein BC3205 {Bacillus cereus [TaxId: 1396]}
Probab=11.20 E-value=1.4e+02 Score=22.46 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhhccccccccceEEEecccHHHHHhhC-------Chhhh-ccccccCCCCCHHHHHHHHHHHHHHHHh
Q psy13103 75 LRLLKIYSKLTKAQYTLSYFSLRSWTWKNANVIDLWTRL-------SDKDQ-ELFFFDVAQLDWDHYCKALLLGLRVYLV 146 (162)
Q Consensus 75 ~~l~k~~~ki~~~~~~l~~Ft~~eW~F~~~n~~~L~~~l-------s~~D~-~~F~fD~~~idW~~Y~~~~~~Girkyll 146 (162)
+--..+.+-|.....-++-|.. |.|.|+-+..|.+=| +++++ ..|.||+....= ..+..+..||-
T Consensus 84 ~~~~~vn~yV~~g~g~~~~~~~--~~w~~~e~~~lv~WlR~~N~~~~~~~~v~f~G~D~~~~~~-----~s~~~v~~yl~ 156 (413)
T d2qgma1 84 GNGLKLNEYIQTGKGNPREFLK--LLYPTDEIIAMIEWMKDYNADPSNKKKIQFIGLDLKALDQ-----GSFNKVIDYVR 156 (413)
T ss_dssp HHHHHHHHHHHHCCSCGGGTSC--TTSCBHHHHHHHHHHHHHHHCTTCCSCCEEEEEECSCCCH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHH--HhhccHHHHHHHHHHHHHcccCCCCCceeEEEecccccch-----hhHHHHHHHHH
Confidence 3444556666666666665554 667899999998755 33444 456699887642 23566778888
Q ss_pred cCCCCCHHHHHHHh
Q psy13103 147 KDGIHTLPAARRKW 160 (162)
Q Consensus 147 ke~~~~l~~ar~~~ 160 (162)
+.+++.++.+++.+
T Consensus 157 ~~~p~~~~~~~~~~ 170 (413)
T d2qgma1 157 LHRPDLLAEVEENY 170 (413)
T ss_dssp HHCTTSHHHHHHHH
T ss_pred hhChHHHHHHHHHH
Confidence 88888888887765
No 8
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.34 E-value=66 Score=20.42 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=24.7
Q ss_pred cccccchhhhhhhhhhHHHHHHHHHHHHhhc
Q psy13103 59 DVAQLDWDHYCTSAPFLRLLKIYSKLTKAQY 89 (162)
Q Consensus 59 d~~~i~W~~Y~~~~p~~~l~k~~~ki~~~~~ 89 (162)
.+..|||..|=.+.+.+.+|.-+.|-+....
T Consensus 44 ~pp~IDwa~Yk~~v~~~~~VD~fek~y~alk 74 (120)
T d2clyb1 44 KPPAIDWAYYKANVAKAGLVDDFEKKFNALK 74 (120)
T ss_dssp SCCCCCHHHHHHTCSSTTHHHHHHHHHTTCC
T ss_pred CCCCcCHHHHHHhcccHHHHHHHHHHHhccc
Confidence 5678999999888887888887777666554
No 9
>d2cx6a1 c.9.1.1 (A:1-90) Hypothetical protein YhcO {Escherichia coli [TaxId: 562]}
Probab=10.16 E-value=79 Score=18.92 Aligned_cols=31 Identities=13% Similarity=0.155 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhccccccccceeEecCCChHHHHhhcCc
Q psy13103 12 LLKIYSKLTKAQYTLSYFSLRSWTWKNANVIDLWTRLSD 50 (162)
Q Consensus 12 l~k~~~ki~~~~~~l~yF~~~~W~F~~~n~~~L~~~l~~ 50 (162)
...+++.+.+..+.-.||.. |..+||+.|+.
T Consensus 14 ~~~~~~~~~~~l~fp~~fG~--------NlDAl~D~lt~ 44 (90)
T d2cx6a1 14 QEDFYRDFSQTFGLAKDKVR--------DLDSLWDVLMN 44 (90)
T ss_dssp HHHHHHHHHHHTTCCTTSCS--------SHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCcchhCC--------CHHHHHHHHcc
Confidence 44577888888888889864 59999999986
No 10
>d3frua2 d.19.1.1 (A:1-178) Fc (IgG) receptor, alpha-1 and alpha-2 domains {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=10.05 E-value=70 Score=21.38 Aligned_cols=17 Identities=12% Similarity=-0.203 Sum_probs=14.3
Q ss_pred HHHHHHH-HHHHHHHHHh
Q psy13103 130 WDHYCKA-LLLGLRVYLV 146 (162)
Q Consensus 130 W~~Y~~~-~~~Girkyll 146 (162)
+..|++. |+..+++||-
T Consensus 153 ~k~yL~~~Ci~wL~~yL~ 170 (178)
T d3frua2 153 ESEFLLTSCPERLLGHLE 170 (178)
T ss_dssp HHHHHHTHHHHHHHHHHH
T ss_pred HHHHHhChhHHHHHHHHH
Confidence 6788875 9999999985
Done!