RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13103
(162 letters)
>gnl|CDD|176924 cd09071, FAR_C, C-terminal domain of fatty acyl CoA reductases.
C-terminal domain of fatty acyl CoA reductases, a family
of SDR-like proteins. SDRs or short-chain
dehydrogenases/reductases are Rossmann-fold
NAD(P)H-binding proteins. Many proteins in this FAR_C
family may function as fatty acyl-CoA reductases (FARs),
acting on medium and long chain fatty acids, and have
been reported to be involved in diverse processes such
as the biosynthesis of insect pheromones, plant
cuticular wax production, and mammalian wax
biosynthesis. In Arabidopsis thaliana, proteins with
this particular architecture have also been identified
as the MALE STERILITY 2 (MS2) gene product, which is
implicated in male gametogenesis. Mutations in MS2
inhibit the synthesis of exine (sporopollenin),
rendering plants unable to reduce pollen wall fatty
acids to corresponding alcohols. The function of this
C-terminal domain is unclear.
Length = 92
Score = 84.5 bits (210), Expect = 3e-22
Identities = 33/70 (47%), Positives = 44/70 (62%)
Query: 76 RLLKIYSKLTKAQYTLSYFSLRSWTWKNANVIDLWTRLSDKDQELFFFDVAQLDWDHYCK 135
RLLK+Y K+ K L YF+ W + N N LW RLS++D+ELF FD+ +DWD Y +
Sbjct: 22 RLLKLYRKIHKLLDLLEYFTTNEWRFDNDNTRALWERLSEEDRELFNFDIRSIDWDDYFE 81
Query: 136 ALLLGLRVYL 145
+ GLR YL
Sbjct: 82 NYIPGLRKYL 91
Score = 72.2 bits (178), Expect = 2e-17
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 12 LLKIYSKLTKAQYTLSYFSLRSWTWKNANVIDLWTRLSDKDQDLFFFDVAQLDWDHYCT 70
LLK+Y K+ K L YF+ W + N N LW RLS++D++LF FD+ +DWD Y
Sbjct: 23 LLKLYRKIHKLLDLLEYFTTNEWRFDNDNTRALWERLSEEDRELFNFDIRSIDWDDYFE 81
>gnl|CDD|111859 pfam03015, Sterile, Male sterility protein. This family represents
the C-terminal region of the male sterility protein in a
number of arabidopsis and drosophila. A sequence-related
jojoba acyl CoA reductase is also included.
Length = 94
Score = 70.7 bits (174), Expect = 9e-17
Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 76 RLLKIYSKLTKAQYTLSYFSLRSWTWKNANVIDLWTRLSDKDQELFFFDVAQLDWDHYCK 135
RL+K+Y K+ K L FSL W + N N +L ++S++D++LF FD+ LDWD Y +
Sbjct: 22 RLVKLYRKIHKGLEVLQPFSLNEWIFDNKNTRELREKMSEEDKKLFNFDMESLDWDEYFR 81
Query: 136 ALLLGLRVYLVKD 148
+ G+R YL+K+
Sbjct: 82 NAIRGIRKYLLKE 94
Score = 57.7 bits (140), Expect = 1e-11
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 12 LLKIYSKLTKAQYTLSYFSLRSWTWKNANVIDLWTRLSDKDQDLFFFDVAQLDWDHY 68
L+K+Y K+ K L FSL W + N N +L ++S++D+ LF FD+ LDWD Y
Sbjct: 23 LVKLYRKIHKGLEVLQPFSLNEWIFDNKNTRELREKMSEEDKKLFNFDMESLDWDEY 79
>gnl|CDD|215279 PLN02503, PLN02503, fatty acyl-CoA reductase 2.
Length = 605
Score = 31.8 bits (72), Expect = 0.15
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 38 NANVIDLWTRLSDKDQDLFFFDVAQLDWDHYCTSA--PFLR 76
N+N L R+S++++ F FDV +DW Y T+ P LR
Sbjct: 557 NSNTQRLMERMSEEEKAEFGFDVGSIDWRDYITNVHIPGLR 597
Score = 31.0 bits (70), Expect = 0.28
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 103 NANVIDLWTRLSDKDQELFFFDVAQLDW-DHYCKALLLGLRVYLVK 147
N+N L R+S++++ F FDV +DW D+ + GLR +++K
Sbjct: 557 NSNTQRLMERMSEEEKAEFGFDVGSIDWRDYITNVHIPGLRRHVMK 602
>gnl|CDD|219870 pfam08502, LeuA_dimer, LeuA allosteric (dimerisation) domain. This
is the C-terminal regulatory (R) domain of
alpha-isopropylmalate synthase, which catalyzes the
first committed step in the leucine biosynthetic
pathway. This domain, is an internally duplicated
structure with a novel fold. It comprises two similar
units that are arranged such that the two -helices pack
together in the centre, crossing at an angle of 34
degrees, sandwiched between the two three-stranded,
antiparallel beta-sheets. The overall domain is thus
constructed as a beta-alpha-beta three-layer sandwich.
Length = 131
Score = 26.4 bits (59), Expect = 5.5
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 112 RLSDKDQELFFFDVAQLDWDHYCKALLLGLRVYLVKDGIHT 152
++D+D E F D + + L L+V +GI T
Sbjct: 1 EVTDEDLEALFSDEYGEAEERF---KLESLQVQSGSNGIPT 38
>gnl|CDD|236718 PRK10574, PRK10574, putative major pilin subunit; Provisional.
Length = 146
Score = 26.1 bits (58), Expect = 6.3
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 9/34 (26%)
Query: 35 TWKNANVIDLWTR---------LSDKDQDLFFFD 59
TW NAN + WTR L +D+F FD
Sbjct: 110 TWDNANGVTGWTRNCNIQSDSALQQACEDVFRFD 143
>gnl|CDD|222474 pfam13959, DUF4217, Domain of unknown function (DUF4217). This
short domain is found at the C-terminus of many helicase
proteins.
Length = 64
Score = 24.7 bits (55), Expect = 7.8
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 121 FFFDVAQLDWDHYCKALLL 139
F+V +LD H K+ L
Sbjct: 38 SIFNVKKLDLGHLAKSFGL 56
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.136 0.446
Gapped
Lambda K H
0.267 0.0881 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,392,345
Number of extensions: 738877
Number of successful extensions: 744
Number of sequences better than 10.0: 1
Number of HSP's gapped: 743
Number of HSP's successfully gapped: 14
Length of query: 162
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 73
Effective length of database: 6,990,096
Effective search space: 510277008
Effective search space used: 510277008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (24.7 bits)