RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13103
         (162 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 32.7 bits (74), Expect = 0.042
 Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 35/100 (35%)

Query: 90  TLSYFSLR-SW-----TWKNANVIDLW-----------TRLSDKDQ-----ELF--F--F 123
           TLS+ SL         ++  A+   L               +  D+     EL   F  +
Sbjct: 10  TLSHGSLEHVLLVPTASFFIASQ--LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67

Query: 124 DVAQLDWD---HYCKALLLGL----RVYLVKDGIHTLPAA 156
             + ++      + + L L L      YL  + IH L A 
Sbjct: 68  VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK 107



 Score = 28.1 bits (62), Expect = 1.4
 Identities = 23/117 (19%), Positives = 36/117 (30%), Gaps = 49/117 (41%)

Query: 60  VAQLDWDHYCTSAPFLRLLKIY----------------SKLTKA--------------Q- 88
            A+L  ++  T      L+K Y                S L +A              Q 
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164

Query: 89  YTLSYFS-LRSWTWK--NANVIDLWTRLSDKDQEL---------FF---FDVAQLDW 130
            T  YF  LR   ++  +  V DL    ++   EL          F    ++  L+W
Sbjct: 165 NTDDYFEELRD-LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI--LEW 218


>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
           ligase phosphoprotein, TER module, phosphopantetheine;
           2.60A {Bacillus subtilis}
          Length = 1304

 Score = 26.4 bits (59), Expect = 5.8
 Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 7/51 (13%)

Query: 110 WTRLSDKDQELFF----FDVAQLDWDHYCKALLLGLRVYLVKDGIHTLPAA 156
           +   SD+D  L      FD    D+     ++L   R+ +  +        
Sbjct: 641 YMAFSDQDTFLSVSNYAFDAFTFDF---YASMLNAARLIIADEHTLLDTER 688


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.136    0.446 

Gapped
Lambda     K      H
   0.267   0.0477    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,619,266
Number of extensions: 140133
Number of successful extensions: 381
Number of sequences better than 10.0: 1
Number of HSP's gapped: 381
Number of HSP's successfully gapped: 11
Length of query: 162
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 76
Effective length of database: 4,300,587
Effective search space: 326844612
Effective search space used: 326844612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.8 bits)