RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13103
         (162 letters)



>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 186

 Score = 26.7 bits (58), Expect = 0.99
 Identities = 12/83 (14%), Positives = 22/83 (26%), Gaps = 7/83 (8%)

Query: 8  EELELLKIYSKLTKAQYTLSYFSLRSWTW-------KNANVIDLWTRLSDKDQDLFFFDV 60
          EE+E +     + +A   ++   L                   L     +   D+     
Sbjct: 13 EEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPG 72

Query: 61 AQLDWDHYCTSAPFLRLLKIYSK 83
            L   +   SA    +LK    
Sbjct: 73 GNLGAQNLSESAAVKEILKEQEN 95


>d1vi1a_ c.77.1.4 (A:) Fatty acid/phospholipid synthesis protein
           PlsX {Bacillus subtilis [TaxId: 1423]}
          Length = 334

 Score = 26.9 bits (59), Expect = 1.0
 Identities = 20/147 (13%), Positives = 43/147 (29%), Gaps = 27/147 (18%)

Query: 1   MELNNNEEELELLKIYSKLTKAQYTLSYFSLRSWTWKNANVIDLWTRLSDKDQDLFFFDV 60
             LN   E+ +  ++  +  +     +  +   +   N    DL              DV
Sbjct: 175 GLLNVGTEDKKGNELTKQTFQILKETANIN---FIG-NVEARDLLDD---------VADV 221

Query: 61  AQLDWDHYCTSAPFLRLLKIYSKLTKAQYTLSYFSLRSWTWKNANVIDLWTRLSDKDQEL 120
              D             LK       + + +    + S          L  +L +     
Sbjct: 222 VVTDG-FTGNV-----TLKTLEGSALSIFKMMRDVMTSTLTSKLAAAVLKPKLKE----- 270

Query: 121 FFFDVAQLDWDHYCKALLLGLRVYLVK 147
                 ++++ +Y  A L GL+  ++K
Sbjct: 271 -MKM--KMEYSNYGGASLFGLKAPVIK 294


>g1or0.1 d.153.1.2 (A:,B:) Cephalosporin acylase {Pseudomonas sp.,
           glutarylamidase [TaxId: 306]}
          Length = 674

 Score = 27.2 bits (59), Expect = 1.1
 Identities = 11/76 (14%), Positives = 19/76 (25%)

Query: 33  SWTWKNANVIDLWTRLSDKDQDLFFFDVAQLDWDHYCTSAPFLRLLKIYSKLTKAQYTLS 92
           +    ++       RL  ++ DL       L   H    A       I + L      + 
Sbjct: 419 APQTPHSLRAQQSVRLMSENDDLTLERFMALQLSHRAVMADRTLPDLIPAALIDPDPEVQ 478

Query: 93  YFSLRSWTWKNANVID 108
             +     W      D
Sbjct: 479 AAARLLAAWDREFTSD 494


>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli
           [TaxId: 562]}
          Length = 195

 Score = 25.9 bits (56), Expect = 2.5
 Identities = 10/91 (10%), Positives = 27/91 (29%), Gaps = 8/91 (8%)

Query: 8   EELELLKIYSKLTKAQYTLSYFSL-----RSWTWKNANVIDLWTRLSD---KDQDLFFFD 59
           EE E +     L +    ++  S+      + T      +     L +    + D+    
Sbjct: 13  EETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLP 72

Query: 60  VAQLDWDHYCTSAPFLRLLKIYSKLTKAQYT 90
                 + +  S   +  +K + +  +    
Sbjct: 73  GGIKGAECFRDSTLLVETVKQFHRSGRIVAA 103


>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase
           {Human (Homo sapiens), AGX1 [TaxId: 9606]}
          Length = 501

 Score = 25.3 bits (55), Expect = 4.5
 Identities = 3/27 (11%), Positives = 13/27 (48%)

Query: 106 VIDLWTRLSDKDQELFFFDVAQLDWDH 132
           ++  W  L +  Q   + ++  ++++ 
Sbjct: 18  LLRFWNELEEAQQVELYAELQAMNFEE 44



 Score = 24.6 bits (53), Expect = 7.7
 Identities = 3/27 (11%), Positives = 13/27 (48%)

Query: 41 VIDLWTRLSDKDQDLFFFDVAQLDWDH 67
          ++  W  L +  Q   + ++  ++++ 
Sbjct: 18 LLRFWNELEEAQQVELYAELQAMNFEE 44


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.136    0.446 

Gapped
Lambda     K      H
   0.267   0.0456    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 675,515
Number of extensions: 29796
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 10
Length of query: 162
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 83
Effective length of database: 1,322,926
Effective search space: 109802858
Effective search space used: 109802858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.3 bits)