BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13107
(170 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242005679|ref|XP_002423690.1| mixed-lineage leukemia protein, mll, putative [Pediculus humanus
corporis]
gi|212506866|gb|EEB10952.1| mixed-lineage leukemia protein, mll, putative [Pediculus humanus
corporis]
Length = 3311
Score = 327 bits (839), Expect = 8e-88, Method: Composition-based stats.
Identities = 153/166 (92%), Positives = 156/166 (93%)
Query: 5 ISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQG 64
ISLEHEILLHPRYFGPQL ETVKQKLY+EVEGTCTGKYGFVIAVT ID+IGAGLI PGQG
Sbjct: 3 ISLEHEILLHPRYFGPQLLETVKQKLYAEVEGTCTGKYGFVIAVTLIDNIGAGLILPGQG 62
Query: 65 FVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSN 124
FVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIP DMQFCPN N
Sbjct: 63 FVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPADMQFCPNFN 122
Query: 125 PVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
P CYKS +VVIQ DDEIRLKIVGTRVDASGIFAIGTLMDDYLGL
Sbjct: 123 PPCYKSKDEDVVIQADDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 168
>gi|307201488|gb|EFN81256.1| DNA-directed RNA polymerase II subunit RPB7 [Harpegnathos saltator]
Length = 179
Score = 320 bits (819), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 150/169 (88%), Positives = 161/169 (95%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGPQL +TVKQKLY+EVEGTCTGKYGFV+AVTTID+IGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPQLLDTVKQKLYTEVEGTCTGKYGFVVAVTTIDNIGAGIIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PGQGFV+YPVKY+AIVFRPFKGEVLDA+VTQVNKVGMFAEIGPLSCFISHHSIP DMQFC
Sbjct: 61 PGQGFVIYPVKYKAIVFRPFKGEVLDAIVTQVNKVGMFAEIGPLSCFISHHSIPEDMQFC 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PN NP CYKS +V+IQ DDEIRLKIVGTRVDA+GIFAIGTLMDDYLG
Sbjct: 121 PNVNPACYKSKEEDVIIQADDEIRLKIVGTRVDATGIFAIGTLMDDYLG 169
>gi|383865506|ref|XP_003708214.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Megachile rotundata]
Length = 173
Score = 319 bits (817), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 152/170 (89%), Positives = 162/170 (95%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGPQL +TVKQKLY+EVEGTCTGKYGFV+AVTTID+IGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPQLLDTVKQKLYTEVEGTCTGKYGFVVAVTTIDNIGAGIIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PGQGFVVYPVKY+AIVFRPFKGEVLDA+VTQVNKVGMFAEIGPLSCFISHHSIP DMQFC
Sbjct: 61 PGQGFVVYPVKYKAIVFRPFKGEVLDAIVTQVNKVGMFAEIGPLSCFISHHSIPADMQFC 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PN NP CYKS +V+IQ DDEIRLKIVGTRVDA+GIFAIGTLMDDYLGL
Sbjct: 121 PNVNPPCYKSKEEDVIIQPDDEIRLKIVGTRVDATGIFAIGTLMDDYLGL 170
>gi|340711605|ref|XP_003394365.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Bombus
terrestris]
gi|350416078|ref|XP_003490834.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Bombus
impatiens]
Length = 173
Score = 318 bits (816), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 152/170 (89%), Positives = 162/170 (95%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGPQL +TVKQKLY+EVEGTCTGKYGFV+AVTTID+IGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPQLLDTVKQKLYTEVEGTCTGKYGFVVAVTTIDNIGAGIIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PGQGFVVYPVKY+AIVFRPFKGEVLDA+VTQVNKVGMFAEIGPLSCFISHHSIP DMQFC
Sbjct: 61 PGQGFVVYPVKYKAIVFRPFKGEVLDAIVTQVNKVGMFAEIGPLSCFISHHSIPADMQFC 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PN NP CYKS +V+IQ DDEIRLKIVGTRVDA+GIFAIGTLMDDYLGL
Sbjct: 121 PNINPPCYKSKEEDVIIQPDDEIRLKIVGTRVDATGIFAIGTLMDDYLGL 170
>gi|357630895|gb|EHJ78714.1| putative mixed-lineage leukemia protein, mll [Danaus plexippus]
Length = 173
Score = 318 bits (814), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 153/170 (90%), Positives = 162/170 (95%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGPQL +TVKQKLY+EVEGTCTGKYGFVIAVTTIDSIGAGLIQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPQLLDTVKQKLYTEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PGQGFVVYPVKY+AIVFRPFKGEVLDA+VTQVNKVGMFA+IGPLSCFISHHSIPTDM+FC
Sbjct: 61 PGQGFVVYPVKYKAIVFRPFKGEVLDAIVTQVNKVGMFAQIGPLSCFISHHSIPTDMEFC 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PN NP CYKS + VIQE+D IRLKIVGTRVDA+GIFAIGTLMDDYLGL
Sbjct: 121 PNVNPPCYKSKQEDNVIQEEDVIRLKIVGTRVDATGIFAIGTLMDDYLGL 170
>gi|328789158|ref|XP_624976.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Apis
mellifera]
gi|380030530|ref|XP_003698899.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Apis
florea]
Length = 173
Score = 317 bits (813), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 151/170 (88%), Positives = 162/170 (95%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGPQL +TVKQKLY+EVEGTCTGKYGFV+AVTTID+IGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPQLLDTVKQKLYTEVEGTCTGKYGFVVAVTTIDNIGAGIIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PGQGFVVYPVKY+AIVFRPFKGEVLDA+VTQVNKVGMFAEIGPLSCFISHHSIP DMQFC
Sbjct: 61 PGQGFVVYPVKYKAIVFRPFKGEVLDAIVTQVNKVGMFAEIGPLSCFISHHSIPADMQFC 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PN NP CYK+ +V+IQ DDEIRLKIVGTRVDA+GIFAIGTLMDDYLGL
Sbjct: 121 PNINPPCYKTKEEDVIIQPDDEIRLKIVGTRVDATGIFAIGTLMDDYLGL 170
>gi|307183360|gb|EFN70218.1| DNA-directed RNA polymerase II subunit RPB7 [Camponotus floridanus]
Length = 249
Score = 317 bits (811), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 150/168 (89%), Positives = 159/168 (94%)
Query: 3 YHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPG 62
Y ISLEHEILLHPRYFGPQL +TVKQKLY+EVEGTCTGKYGFV+AVTTID+IGAG+IQPG
Sbjct: 79 YMISLEHEILLHPRYFGPQLLDTVKQKLYTEVEGTCTGKYGFVVAVTTIDNIGAGIIQPG 138
Query: 63 QGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPN 122
QGFVVYPVKY+AIVFRPFKGEVLDA+VTQVNKVGMFAEIGPLSCFISHHSIP DMQFCPN
Sbjct: 139 QGFVVYPVKYKAIVFRPFKGEVLDAIVTQVNKVGMFAEIGPLSCFISHHSIPEDMQFCPN 198
Query: 123 SNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
NP CYKS +VVIQ DDEIRLKIVGTRVDA+GIFAIGTLMDDYLGL
Sbjct: 199 VNPACYKSKEEDVVIQADDEIRLKIVGTRVDATGIFAIGTLMDDYLGL 246
>gi|219879810|ref|NP_001137380.1| RNA polymerase II subunit 7 [Nasonia vitripennis]
Length = 173
Score = 316 bits (810), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 151/170 (88%), Positives = 160/170 (94%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGPQL +TVKQKLY+EVEG CTGKYGFV+AVTTID+IGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPQLLDTVKQKLYTEVEGNCTGKYGFVVAVTTIDNIGAGIIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PGQGFVVYPVKY+AIVFRPFKGEVLD +VTQVNKVGMFAEIGPLSCFISHHSIP DMQFC
Sbjct: 61 PGQGFVVYPVKYKAIVFRPFKGEVLDGIVTQVNKVGMFAEIGPLSCFISHHSIPADMQFC 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PN NP CYKS +VVIQ DDEIRLKIVGTRVDA+GIFAIGTLMDDYLGL
Sbjct: 121 PNVNPPCYKSKDEDVVIQADDEIRLKIVGTRVDATGIFAIGTLMDDYLGL 170
>gi|332024088|gb|EGI64305.1| DNA-directed RNA polymerase II subunit RPB7 [Acromyrmex echinatior]
Length = 267
Score = 314 bits (804), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 149/167 (89%), Positives = 158/167 (94%)
Query: 3 YHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPG 62
Y ISLEHEILLHPRYFGPQL +TVKQKLY+EVEGTCTGKYGFV+AVTTID+IGAG+IQPG
Sbjct: 89 YTISLEHEILLHPRYFGPQLLDTVKQKLYTEVEGTCTGKYGFVVAVTTIDNIGAGIIQPG 148
Query: 63 QGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPN 122
QGFVVYPVKY+AIVFRPFKGEVLDA+VTQVNKVGMFAEIGPLSCFISHHSIP DMQFCPN
Sbjct: 149 QGFVVYPVKYKAIVFRPFKGEVLDAIVTQVNKVGMFAEIGPLSCFISHHSIPEDMQFCPN 208
Query: 123 SNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
NP CYKS +VVIQ DDEIRLKIVGTRVDA+GIFAIGTLMDDYLG
Sbjct: 209 VNPACYKSKEEDVVIQADDEIRLKIVGTRVDATGIFAIGTLMDDYLG 255
>gi|170030019|ref|XP_001842888.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Culex
quinquefasciatus]
gi|167865348|gb|EDS28731.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Culex
quinquefasciatus]
Length = 173
Score = 314 bits (804), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 152/170 (89%), Positives = 160/170 (94%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGPQL ETVKQKLY+EVEGTCTGKYGFVIAVTTID IG+G+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPQLIETVKQKLYTEVEGTCTGKYGFVIAVTTIDDIGSGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PGQGFVVYPVKY+AIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIP DMQFC
Sbjct: 61 PGQGFVVYPVKYKAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPADMQFC 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PN NP CYKS +VVI +D+IRLKIVGTRVDA+GIFAIGTLMDDYLGL
Sbjct: 121 PNGNPPCYKSKDEDVVIALEDKIRLKIVGTRVDATGIFAIGTLMDDYLGL 170
>gi|125777779|ref|XP_001359725.1| GA16051 [Drosophila pseudoobscura pseudoobscura]
gi|194767707|ref|XP_001965956.1| GF11824 [Drosophila ananassae]
gi|194900932|ref|XP_001980009.1| GG20814 [Drosophila erecta]
gi|195157158|ref|XP_002019463.1| GL12210 [Drosophila persimilis]
gi|195444928|ref|XP_002070093.1| GK11212 [Drosophila willistoni]
gi|195501415|ref|XP_002097786.1| GE26402 [Drosophila yakuba]
gi|198477563|ref|XP_002136553.1| GA27654 [Drosophila pseudoobscura pseudoobscura]
gi|54639475|gb|EAL28877.1| GA16051 [Drosophila pseudoobscura pseudoobscura]
gi|190619799|gb|EDV35323.1| GF11824 [Drosophila ananassae]
gi|190651712|gb|EDV48967.1| GG20814 [Drosophila erecta]
gi|194116054|gb|EDW38097.1| GL12210 [Drosophila persimilis]
gi|194166178|gb|EDW81079.1| GK11212 [Drosophila willistoni]
gi|194183887|gb|EDW97498.1| GE26402 [Drosophila yakuba]
gi|198142841|gb|EDY71554.1| GA27654 [Drosophila pseudoobscura pseudoobscura]
Length = 173
Score = 312 bits (800), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 151/170 (88%), Positives = 159/170 (93%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGPQL ETVKQKLYSEVEGTCTGKYGFVIAVTTID IG+G+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPQLLETVKQKLYSEVEGTCTGKYGFVIAVTTIDQIGSGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PGQGFVVYPVKY+AIVFRPFKGEVLDAVV Q+NKVGMFAEIGPLSCFISHHSIP DMQFC
Sbjct: 61 PGQGFVVYPVKYKAIVFRPFKGEVLDAVVKQINKVGMFAEIGPLSCFISHHSIPADMQFC 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PN NP CYKS +VVI +D+IRLKIVGTRVDA+GIFAIGTLMDDYLGL
Sbjct: 121 PNGNPPCYKSKDEDVVISGEDKIRLKIVGTRVDATGIFAIGTLMDDYLGL 170
>gi|195036122|ref|XP_001989520.1| GH18755 [Drosophila grimshawi]
gi|195111302|ref|XP_002000218.1| GI22645 [Drosophila mojavensis]
gi|195389416|ref|XP_002053373.1| GJ23373 [Drosophila virilis]
gi|193893716|gb|EDV92582.1| GH18755 [Drosophila grimshawi]
gi|193916812|gb|EDW15679.1| GI22645 [Drosophila mojavensis]
gi|194151459|gb|EDW66893.1| GJ23373 [Drosophila virilis]
Length = 173
Score = 312 bits (799), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 151/170 (88%), Positives = 159/170 (93%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGPQL ETVKQKLYSEVEGTCTGKYGFVIAVTTID IG+G+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPQLLETVKQKLYSEVEGTCTGKYGFVIAVTTIDLIGSGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PGQGFVVYPVKY+AIVFRPFKGEVLDAVV Q+NKVGMFAEIGPLSCFISHHSIP DMQFC
Sbjct: 61 PGQGFVVYPVKYKAIVFRPFKGEVLDAVVKQINKVGMFAEIGPLSCFISHHSIPADMQFC 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PN NP CYKS +VVI +D+IRLKIVGTRVDA+GIFAIGTLMDDYLGL
Sbjct: 121 PNGNPPCYKSKDEDVVISGEDKIRLKIVGTRVDATGIFAIGTLMDDYLGL 170
>gi|58394731|ref|XP_320916.2| AGAP002121-PA [Anopheles gambiae str. PEST]
gi|55233251|gb|EAA00949.2| AGAP002121-PA [Anopheles gambiae str. PEST]
Length = 173
Score = 311 bits (798), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 148/170 (87%), Positives = 158/170 (92%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGPQL ETVKQKLY+EVEGTCTGKYGFVIAVTTID IG+G IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPQLIETVKQKLYTEVEGTCTGKYGFVIAVTTIDDIGSGTIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PGQGFVVYPVKY+AIVFRPFKGEVLDA V QVNKVGMFAEIGPLSCFISHHSIP DMQFC
Sbjct: 61 PGQGFVVYPVKYKAIVFRPFKGEVLDATVKQVNKVGMFAEIGPLSCFISHHSIPADMQFC 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PN P CY++++GE VI +D+IRLKIVGTRVDA+GIFAIGTLMDDYLGL
Sbjct: 121 PNGAPPCYRAINGESVIAAEDKIRLKIVGTRVDATGIFAIGTLMDDYLGL 170
>gi|24647020|ref|NP_731983.1| Rpb7 [Drosophila melanogaster]
gi|195328827|ref|XP_002031113.1| GM25797 [Drosophila sechellia]
gi|195570746|ref|XP_002103365.1| GD20374 [Drosophila simulans]
gi|23171325|gb|AAF55145.2| Rpb7 [Drosophila melanogaster]
gi|66772833|gb|AAY55728.1| IP02321p [Drosophila melanogaster]
gi|117935442|gb|ABK57062.1| IP02323p [Drosophila melanogaster]
gi|194120056|gb|EDW42099.1| GM25797 [Drosophila sechellia]
gi|194199292|gb|EDX12868.1| GD20374 [Drosophila simulans]
gi|220951186|gb|ACL88136.1| Rpb7-PA [synthetic construct]
gi|220960522|gb|ACL92797.1| Rpb7-PA [synthetic construct]
Length = 173
Score = 311 bits (797), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 150/170 (88%), Positives = 158/170 (92%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLE EILLHPRYFGPQL ETVKQKLYSEVEGTCTGKYGFVIAVTTID IG+G+IQ
Sbjct: 1 MFYHISLEQEILLHPRYFGPQLLETVKQKLYSEVEGTCTGKYGFVIAVTTIDQIGSGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PGQGFVVYPVKY+AIVFRPFKGEVLDAVV Q+NKVGMFAEIGPLSCFISHHSIP DMQFC
Sbjct: 61 PGQGFVVYPVKYKAIVFRPFKGEVLDAVVKQINKVGMFAEIGPLSCFISHHSIPADMQFC 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PN NP CYKS +VVI +D+IRLKIVGTRVDA+GIFAIGTLMDDYLGL
Sbjct: 121 PNGNPPCYKSKDEDVVISGEDKIRLKIVGTRVDATGIFAIGTLMDDYLGL 170
>gi|322791340|gb|EFZ15830.1| hypothetical protein SINV_10601 [Solenopsis invicta]
Length = 169
Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 148/165 (89%), Positives = 157/165 (95%)
Query: 5 ISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQG 64
ISLEHEILLHPRYFGPQL +TVKQKLY+EVEGTCTGKYGFV+AVTTID+IGAG+IQPGQG
Sbjct: 1 ISLEHEILLHPRYFGPQLLDTVKQKLYTEVEGTCTGKYGFVVAVTTIDNIGAGIIQPGQG 60
Query: 65 FVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSN 124
FVVYPVKY+AIVFRPFKGEVLDA+VTQVNKVGMFAEIGPLSCFISHHSIP DMQFCPN N
Sbjct: 61 FVVYPVKYKAIVFRPFKGEVLDAIVTQVNKVGMFAEIGPLSCFISHHSIPEDMQFCPNVN 120
Query: 125 PVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
P CYKS +VVIQ DDEIRLKIVGTRVDA+GIFAIGTLMDDYLG
Sbjct: 121 PACYKSKEEDVVIQADDEIRLKIVGTRVDATGIFAIGTLMDDYLG 165
>gi|157136015|ref|XP_001656728.1| DNA-directed RNA polymerase II 19 kDa polypeptide rpb7 [Aedes
aegypti]
gi|108881096|gb|EAT45321.1| AAEL003401-PA [Aedes aegypti]
Length = 173
Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 150/170 (88%), Positives = 159/170 (93%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGPQL ETVKQKLY+EVEGTCTGKYGFVIAVTTID IG+GLI
Sbjct: 1 MFYHISLEHEILLHPRYFGPQLIETVKQKLYTEVEGTCTGKYGFVIAVTTIDDIGSGLIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PGQGFVVYPVKY+AIVFRPFKGEVLDAVVTQVNKVGMFA+IGPLSCFISHHSIP DMQFC
Sbjct: 61 PGQGFVVYPVKYKAIVFRPFKGEVLDAVVTQVNKVGMFAQIGPLSCFISHHSIPADMQFC 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PN NP CYKS +VVI +D+IRLKIVGTRVDA+GIFAIGTLMDD+LGL
Sbjct: 121 PNGNPPCYKSQDEDVVIALEDKIRLKIVGTRVDATGIFAIGTLMDDFLGL 170
>gi|312378597|gb|EFR25129.1| hypothetical protein AND_09806 [Anopheles darlingi]
Length = 983
Score = 307 bits (786), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 144/166 (86%), Positives = 154/166 (92%)
Query: 5 ISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQG 64
ISLEHEILLHPRYFGPQL ETVKQKLY+EVEGTCTGKYGFVIAVTTID IG+G IQPGQG
Sbjct: 815 ISLEHEILLHPRYFGPQLIETVKQKLYTEVEGTCTGKYGFVIAVTTIDDIGSGTIQPGQG 874
Query: 65 FVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSN 124
FVVYPVKY+AIVFRPFKGEVLDA V QVNKVGMFAEIGPLSCFISHHSIP DMQFCPN
Sbjct: 875 FVVYPVKYKAIVFRPFKGEVLDATVKQVNKVGMFAEIGPLSCFISHHSIPADMQFCPNGA 934
Query: 125 PVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
P CY++++GE VI +D+IRLKIVGTRVDA+GIFAIGTLMDDYLGL
Sbjct: 935 PPCYRAMNGESVIAAEDKIRLKIVGTRVDATGIFAIGTLMDDYLGL 980
>gi|325304060|tpg|DAA34731.1| TPA_inf: DNA-directed RNA polymerase subunit E' [Amblyomma
variegatum]
gi|346469865|gb|AEO34777.1| hypothetical protein [Amblyomma maculatum]
Length = 171
Score = 306 bits (785), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 145/170 (85%), Positives = 160/170 (94%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISL+HEILLHPRYFGPQL ETVKQKLY+EVEGTCTGKYGFV+AVTTID+IG GLIQ
Sbjct: 1 MFYHISLDHEILLHPRYFGPQLVETVKQKLYAEVEGTCTGKYGFVVAVTTIDNIGGGLIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFVVYPV+Y+AIVFRPFKGEVLDAVVTQVNKVG+F EIGPLSCFIS HSIP+DMQF
Sbjct: 61 PGRGFVVYPVRYKAIVFRPFKGEVLDAVVTQVNKVGLFTEIGPLSCFISRHSIPSDMQFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CY++ +++IQ+DDEIRLKIVGTRVDAS IFAIGTLMDDYLGL
Sbjct: 121 PNSNPPCYRTQDEDIIIQQDDEIRLKIVGTRVDASDIFAIGTLMDDYLGL 170
>gi|442759309|gb|JAA71813.1| Putative dna-directed rna polymerase subunit e' [Ixodes ricinus]
Length = 171
Score = 306 bits (783), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 146/170 (85%), Positives = 159/170 (93%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISL+HEILLHPRYFGPQL ETVKQKLY+EVEGTCTGKYGFV+AV TID+IGAGLIQ
Sbjct: 1 MFYHISLDHEILLHPRYFGPQLEETVKQKLYAEVEGTCTGKYGFVVAVMTIDNIGAGLIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFVVYPV+Y AIVFRPFKGEVLDAVVTQVNKVG+F EIGPLSCFIS HSIP+DMQF
Sbjct: 61 PGRGFVVYPVRYTAIVFRPFKGEVLDAVVTQVNKVGLFTEIGPLSCFISRHSIPSDMQFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CY++ +V+IQ+DDEIRLKIVGTRVDAS IFAIGTLMDDYLGL
Sbjct: 121 PNSNPPCYRTQDEDVIIQQDDEIRLKIVGTRVDASDIFAIGTLMDDYLGL 170
>gi|427786803|gb|JAA58853.1| Putative polymerase rna ii dna directed polypeptide g
[Rhipicephalus pulchellus]
Length = 171
Score = 305 bits (781), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 144/170 (84%), Positives = 160/170 (94%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISL+HEILLHP+YFGPQL ETVKQKLY+EVEGTCTGKYGFV+AVTTID+IG GLIQ
Sbjct: 1 MFYHISLDHEILLHPKYFGPQLVETVKQKLYAEVEGTCTGKYGFVVAVTTIDNIGGGLIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFVVYPV+Y+AIVFRPFKGEVLDAVVTQVNKVG+F EIGPLSCFIS HSIP+DMQF
Sbjct: 61 PGRGFVVYPVRYKAIVFRPFKGEVLDAVVTQVNKVGLFTEIGPLSCFISRHSIPSDMQFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CY++ +++IQ+DDEIRLKIVGTRVDAS IFAIGTLMDDYLGL
Sbjct: 121 PNSNPPCYRTQDEDIIIQQDDEIRLKIVGTRVDASDIFAIGTLMDDYLGL 170
>gi|321461059|gb|EFX72094.1| hypothetical protein DAPPUDRAFT_308561 [Daphnia pulex]
Length = 172
Score = 304 bits (778), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 145/170 (85%), Positives = 159/170 (93%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHI+LEHEILLHPRYFGPQL ETVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 1 MFYHIALEHEILLHPRYFGPQLMETVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGIIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PGQGFVVYPVKY+AIVFRPFKG+VLDAVVTQVNKVG+F EIGPLSCFIS HSIP+DMQF
Sbjct: 61 PGQGFVVYPVKYKAIVFRPFKGQVLDAVVTQVNKVGLFTEIGPLSCFISRHSIPSDMQFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNS P CYK+ +VVIQ+DDEIR+KIVG RVDA+ IFAIGTLMDDYLGL
Sbjct: 121 PNSTPPCYKTQDEDVVIQQDDEIRIKIVGLRVDATDIFAIGTLMDDYLGL 170
>gi|444711067|gb|ELW52021.1| TAF6-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 6L [Tupaia chinensis]
Length = 820
Score = 301 bits (772), Expect = 4e-80, Method: Composition-based stats.
Identities = 137/170 (80%), Positives = 156/170 (91%), Gaps = 1/170 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPVKY+AIVFRPFKGEV+DA+VTQVNKVG+F EIGP+SCFIS HSIP++M+F
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAIVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CYK++ EV Q+DDEIRLKIVGTRVD + IFAIG+LMDDYLG
Sbjct: 121 PNSNPPCYKTMD-EVRHQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGF 169
>gi|91082423|ref|XP_970313.1| PREDICTED: similar to GA16051-PA [Tribolium castaneum]
gi|270007516|gb|EFA03964.1| hypothetical protein TcasGA2_TC014109 [Tribolium castaneum]
Length = 173
Score = 301 bits (772), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 146/170 (85%), Positives = 156/170 (91%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHP+YFGPQL E VK KLY+EVEGTCTGKYGFVIAVTTIDSIGAGLI
Sbjct: 1 MFYHISLEHEILLHPQYFGPQLLEKVKTKLYTEVEGTCTGKYGFVIAVTTIDSIGAGLIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PGQG+VVYPVKY+AIVFRPFKGEVLDAVV QVNKVGMFAEIGPLSCFISHHSIP +M+FC
Sbjct: 61 PGQGYVVYPVKYKAIVFRPFKGEVLDAVVRQVNKVGMFAEIGPLSCFISHHSIPAEMEFC 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PN NP CYK+ +VVI + EIRLKIVGTRVDA+GIFAIGTLMDDYLGL
Sbjct: 121 PNVNPQCYKTKDEDVVIHAEGEIRLKIVGTRVDATGIFAIGTLMDDYLGL 170
>gi|332374930|gb|AEE62606.1| unknown [Dendroctonus ponderosae]
Length = 173
Score = 300 bits (769), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 145/170 (85%), Positives = 155/170 (91%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHP+YFGPQL E VK KLY+EVEGTCTGKYGFVIAVTTID IGAGLI
Sbjct: 1 MFYHISLEHEILLHPQYFGPQLLEKVKTKLYTEVEGTCTGKYGFVIAVTTIDHIGAGLIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PGQGFVVYPVKY+AIVFRPFKGEVLDAVV QVNKVGMFAEIGPLSCFISHHSIP +M+FC
Sbjct: 61 PGQGFVVYPVKYKAIVFRPFKGEVLDAVVRQVNKVGMFAEIGPLSCFISHHSIPAEMEFC 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PN NP CYK+ ++VI + EIRLKIVGTRVDASGIFAIGTLMDD+LGL
Sbjct: 121 PNVNPQCYKTKEEDIVIHAEGEIRLKIVGTRVDASGIFAIGTLMDDFLGL 170
>gi|41054447|ref|NP_955963.1| DNA-directed RNA polymerase II subunit RPB7 [Danio rerio]
gi|62858849|ref|NP_001017065.1| polymerase (RNA) II (DNA directed) polypeptide G [Xenopus
(Silurana) tropicalis]
gi|147900153|ref|NP_001091291.1| polymerase (RNA) II (DNA directed) polypeptide G [Xenopus laevis]
gi|50401534|sp|Q7ZW41.1|RPB7_DANRE RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7
gi|28278826|gb|AAH45299.1| Polymerase (RNA) II (DNA directed) polypeptide G-like [Danio rerio]
gi|89266814|emb|CAJ83494.1| polymerase (RNA) II (DNA directed) polypeptide G [Xenopus
(Silurana) tropicalis]
gi|123959696|gb|AAI28969.1| LOC100037112 protein [Xenopus laevis]
gi|134025964|gb|AAI35153.1| hypothetical protein LOC549819 [Xenopus (Silurana) tropicalis]
gi|182890184|gb|AAI64883.1| Polr2gl protein [Danio rerio]
Length = 172
Score = 299 bits (766), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 141/170 (82%), Positives = 159/170 (93%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CYK+V +VVIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct: 121 PNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 170
>gi|291222602|ref|XP_002731309.1| PREDICTED: DNA directed RNA polymerase II polypeptide G-like
[Saccoglossus kowalevskii]
Length = 172
Score = 299 bits (766), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 142/170 (83%), Positives = 157/170 (92%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGRIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P +GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGPLSCF+S HSIP+DM+F
Sbjct: 61 PSRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPLSCFVSRHSIPSDMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CYK+ +VVIQ+DDEIRLKIVGTRVDAS IFAIG+LMDDYLGL
Sbjct: 121 PNSNPPCYKTQDEDVVIQQDDEIRLKIVGTRVDASDIFAIGSLMDDYLGL 170
>gi|221102923|ref|XP_002157143.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Hydra
magnipapillata]
Length = 172
Score = 299 bits (765), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 143/170 (84%), Positives = 157/170 (92%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L +TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLQTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGYIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P +GFVVYPVKY+AIVFRPFKGEVLDAVVTQVNK G+F E+GPLSCFIS HSIPTDM+F
Sbjct: 61 PSRGFVVYPVKYKAIVFRPFKGEVLDAVVTQVNKAGLFTEVGPLSCFISRHSIPTDMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNS+P CYK+ EVVIQ+DDEIRLKIVGTRVDA+ IFAIGTLMDD+LGL
Sbjct: 121 PNSSPPCYKTHDEEVVIQQDDEIRLKIVGTRVDANDIFAIGTLMDDFLGL 170
>gi|149641280|ref|XP_001511485.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Ornithorhynchus anatinus]
gi|348514213|ref|XP_003444635.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Oreochromis niloticus]
gi|395544392|ref|XP_003774094.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Sarcophilus
harrisii]
gi|410913687|ref|XP_003970320.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Takifugu rubripes]
gi|229367270|gb|ACQ58615.1| DNA-directed RNA polymerase II subunit RPB7 [Anoplopoma fimbria]
Length = 172
Score = 298 bits (764), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 140/170 (82%), Positives = 159/170 (93%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CYK+V ++VIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct: 121 PNSNPPCYKTVDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 170
>gi|334332599|ref|XP_001362540.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Monodelphis domestica]
Length = 201
Score = 298 bits (762), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 140/170 (82%), Positives = 159/170 (93%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CYK+V ++VIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct: 121 PNSNPPCYKTVDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 170
>gi|4505947|ref|NP_002687.1| DNA-directed RNA polymerase II subunit RPB7 [Homo sapiens]
gi|13385826|ref|NP_080605.1| DNA-directed RNA polymerase II subunit RPB7 [Mus musculus]
gi|16758826|ref|NP_446400.1| DNA-directed RNA polymerase II subunit RPB7 [Rattus norvegicus]
gi|62752835|ref|NP_001015633.1| DNA-directed RNA polymerase II subunit RPB7 [Bos taurus]
gi|388452830|ref|NP_001253453.1| DNA-directed RNA polymerase II subunit RPB7 [Macaca mulatta]
gi|57099729|ref|XP_533260.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Canis lupus
familiaris]
gi|291409522|ref|XP_002721043.1| PREDICTED: DNA directed RNA polymerase II polypeptide G
[Oryctolagus cuniculus]
gi|296218536|ref|XP_002755481.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Callithrix
jacchus]
gi|301779986|ref|XP_002925403.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Ailuropoda melanoleuca]
gi|332836746|ref|XP_001142605.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Pan
troglodytes]
gi|335281668|ref|XP_003353863.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Sus
scrofa]
gi|338712501|ref|XP_001495008.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Equus
caballus]
gi|354504568|ref|XP_003514346.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cricetulus griseus]
gi|397516683|ref|XP_003828553.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Pan
paniscus]
gi|402893073|ref|XP_003909728.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 isoform 1
[Papio anubis]
gi|402893075|ref|XP_003909729.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 isoform 2
[Papio anubis]
gi|403255132|ref|XP_003920301.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 isoform 1
[Saimiri boliviensis boliviensis]
gi|403255134|ref|XP_003920302.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 isoform 2
[Saimiri boliviensis boliviensis]
gi|410974282|ref|XP_003993576.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Felis
catus]
gi|426368868|ref|XP_004051423.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Gorilla
gorilla gorilla]
gi|50403597|sp|P62489.1|RPB7_RAT RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7; AltName:
Full=DNA-directed RNA polymerase II subunit G
gi|50403601|sp|P62487.1|RPB7_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7; AltName:
Full=DNA-directed RNA polymerase II subunit G; AltName:
Full=RNA polymerase II 19 kDa subunit; Short=RPB19
gi|50403602|sp|P62488.1|RPB7_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7; AltName:
Full=DNA-directed RNA polymerase II subunit G
gi|73917870|sp|Q5E9B8.1|RPB7_BOVIN RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7; AltName:
Full=DNA-directed RNA polymerase II subunit G
gi|83754529|pdb|2C35|B Chain B, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|83754531|pdb|2C35|D Chain D, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|83754533|pdb|2C35|F Chain F, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|83754535|pdb|2C35|H Chain H, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|929921|gb|AAA86500.1| RNA polymerase II subunit hsRPB7 [Homo sapiens]
gi|1360132|emb|CAA96468.1| RNA polymerase II RPB7 subunit-like protein [Rattus norvegicus]
gi|1924974|gb|AAB96827.1| RNA polymerase II seventh subunit [Homo sapiens]
gi|12846312|dbj|BAB27119.1| unnamed protein product [Mus musculus]
gi|12847875|dbj|BAB27743.1| unnamed protein product [Mus musculus]
gi|12850308|dbj|BAB28670.1| unnamed protein product [Mus musculus]
gi|12856725|dbj|BAB30760.1| unnamed protein product [Mus musculus]
gi|33243991|gb|AAH55278.1| Polymerase (RNA) II (DNA directed) polypeptide G [Mus musculus]
gi|37514866|gb|AAH05580.3| Polymerase (RNA) II (DNA directed) polypeptide G [Mus musculus]
gi|38014576|gb|AAH60595.1| Polymerase (RNA) II (DNA directed) polypeptide G [Rattus
norvegicus]
gi|38051973|gb|AAH60550.1| Polymerase (RNA) II (DNA directed) polypeptide G [Rattus
norvegicus]
gi|59858369|gb|AAX09019.1| DNA directed RNA polymerase II polypeptide G [Bos taurus]
gi|85566845|gb|AAI12163.1| DNA directed RNA polymerase II polypeptide G [Homo sapiens]
gi|85567601|gb|AAI12165.1| DNA directed RNA polymerase II polypeptide G [Homo sapiens]
gi|119594498|gb|EAW74092.1| polymerase (RNA) II (DNA directed) polypeptide G, isoform CRA_c
[Homo sapiens]
gi|148701424|gb|EDL33371.1| polymerase (RNA) II (DNA directed) polypeptide G, isoform CRA_a
[Mus musculus]
gi|149062299|gb|EDM12722.1| polymerase (RNA) II (DNA directed) polypeptide G, isoform CRA_a
[Rattus norvegicus]
gi|189053261|dbj|BAG35067.1| unnamed protein product [Homo sapiens]
gi|208967084|dbj|BAG73556.1| polymerase (RNA) II (DNA directed) polypeptide G [synthetic
construct]
gi|296471655|tpg|DAA13770.1| TPA: DNA-directed RNA polymerase II subunit RPB7 [Bos taurus]
gi|380785401|gb|AFE64576.1| DNA-directed RNA polymerase II subunit RPB7 [Macaca mulatta]
gi|383414681|gb|AFH30554.1| DNA-directed RNA polymerase II subunit RPB7 [Macaca mulatta]
gi|384947774|gb|AFI37492.1| DNA-directed RNA polymerase II subunit RPB7 [Macaca mulatta]
gi|410267352|gb|JAA21642.1| polymerase (RNA) II (DNA directed) polypeptide G [Pan troglodytes]
gi|410294946|gb|JAA26073.1| polymerase (RNA) II (DNA directed) polypeptide G [Pan troglodytes]
gi|410351171|gb|JAA42189.1| polymerase (RNA) II (DNA directed) polypeptide G [Pan troglodytes]
gi|1098305|prf||2115374A RNA polymerase II
Length = 172
Score = 298 bits (762), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 139/170 (81%), Positives = 159/170 (93%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CYK++ ++VIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 170
>gi|259089327|ref|NP_001158701.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Oncorhynchus
mykiss]
gi|209737754|gb|ACI69746.1| DNA-directed RNA polymerase II subunit RPB7 [Salmo salar]
gi|225705948|gb|ACO08820.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Oncorhynchus
mykiss]
gi|225717052|gb|ACO14372.1| DNA-directed RNA polymerase II subunit RPB7 [Esox lucius]
gi|303664575|gb|ADM16147.1| DNA-directed RNA polymerase II subunit RPB7 [Salmo salar]
Length = 172
Score = 297 bits (761), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 139/170 (81%), Positives = 158/170 (92%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CYK+ ++VIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct: 121 PNSNPPCYKTTDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 170
>gi|229367494|gb|ACQ58727.1| DNA-directed RNA polymerase II subunit RPB7 [Anoplopoma fimbria]
Length = 172
Score = 297 bits (760), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 140/170 (82%), Positives = 158/170 (92%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F
Sbjct: 61 PGGGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CYK+V ++VIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct: 121 PNSNPPCYKTVDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 170
>gi|355712735|gb|AES04448.1| polymerase II polypeptide G [Mustela putorius furo]
Length = 183
Score = 297 bits (760), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 139/170 (81%), Positives = 159/170 (93%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 13 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 72
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F
Sbjct: 73 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 132
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CYK++ ++VIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct: 133 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 182
>gi|344295631|ref|XP_003419515.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Loxodonta africana]
Length = 232
Score = 297 bits (760), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 138/168 (82%), Positives = 157/168 (93%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYL 168
PNSNP CYK+V ++VIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYL
Sbjct: 121 PNSNPPCYKTVDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYL 168
>gi|72013666|ref|XP_780458.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Strongylocentrotus purpuratus]
gi|115911735|ref|XP_001175504.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Strongylocentrotus purpuratus]
Length = 172
Score = 296 bits (759), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 139/170 (81%), Positives = 157/170 (92%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYH+SLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 1 MFYHVSLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGMIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P +GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F +IGPLSCFIS HSIP DM+F
Sbjct: 61 PSRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTDIGPLSCFISRHSIPADMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNS+P CYK+ ++VIQ+DDEIRLKIVGTRVDAS IFAIGTLMDD+LGL
Sbjct: 121 PNSSPPCYKTKDEDIVIQQDDEIRLKIVGTRVDASDIFAIGTLMDDFLGL 170
>gi|432878328|ref|XP_004073303.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Oryzias latipes]
Length = 171
Score = 296 bits (759), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 139/169 (82%), Positives = 158/169 (93%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PNSNP CYK+V ++VIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLG
Sbjct: 121 PNSNPPCYKTVDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLG 169
>gi|260787962|ref|XP_002589020.1| hypothetical protein BRAFLDRAFT_124918 [Branchiostoma floridae]
gi|229274193|gb|EEN45031.1| hypothetical protein BRAFLDRAFT_124918 [Branchiostoma floridae]
Length = 172
Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 137/170 (80%), Positives = 157/170 (92%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IG G IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGVGAIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F E+GP+SCF+S HSIP+DM+F
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEVGPMSCFVSRHSIPSDMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CYK+ +VVIQ+DDEIR+KIVGTR+DA+ IFAIG+LMDDYLGL
Sbjct: 121 PNSNPPCYKTADEDVVIQQDDEIRIKIVGTRIDANDIFAIGSLMDDYLGL 170
>gi|229365728|gb|ACQ57844.1| DNA-directed RNA polymerase II subunit RPB7 [Anoplopoma fimbria]
Length = 172
Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 138/170 (81%), Positives = 159/170 (93%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+HISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 1 MFHHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F E+GP+SCFIS HSIP++M+F
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEVGPMSCFISRHSIPSEMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CYK+V ++VIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct: 121 PNSNPPCYKTVDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 170
>gi|240848959|ref|NP_001155524.1| DNA-directed RNA polymerase II subunit RPB7 [Acyrthosiphon pisum]
gi|239792200|dbj|BAH72468.1| ACYPI003367 [Acyrthosiphon pisum]
Length = 172
Score = 296 bits (757), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 141/170 (82%), Positives = 156/170 (91%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHI+LEH++LLHPRYFGPQL +TVKQKLY EVEGTCTGKYGFVIAVT ID+IG GLI
Sbjct: 1 MFYHIALEHDVLLHPRYFGPQLLDTVKQKLYREVEGTCTGKYGFVIAVTHIDNIGCGLIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PGQGFVVY VKY+AIVFRPFKGEVL+AVVTQ+NKVGMFAEIGPLSCFISHHSIP+++QFC
Sbjct: 61 PGQGFVVYTVKYKAIVFRPFKGEVLEAVVTQLNKVGMFAEIGPLSCFISHHSIPSELQFC 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PN++P CYKS + IQ +D IRLKIVGTRVDASGIFAIGTLMDDYLGL
Sbjct: 121 PNTSPPCYKSKEENIAIQPEDTIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
>gi|355566390|gb|EHH22769.1| DNA-directed RNA polymerase II subunit RPB7, partial [Macaca
mulatta]
gi|355752017|gb|EHH56137.1| DNA-directed RNA polymerase II subunit RPB7, partial [Macaca
fascicularis]
Length = 169
Score = 296 bits (757), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 138/169 (81%), Positives = 158/169 (93%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PNSNP CYK++ ++VIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLG
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLG 169
>gi|213972531|ref|NP_001135427.1| DNA-directed RNA polymerase II subunit RPB7 [Ovis aries]
gi|212378988|gb|ACJ24821.1| DNA-directed RNA polymerase II polypeptide G [Ovis aries]
Length = 172
Score = 295 bits (755), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 138/170 (81%), Positives = 158/170 (92%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPVK +AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F
Sbjct: 61 PGRGFVLYPVKSKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CYK++ ++VIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 170
>gi|209733032|gb|ACI67385.1| DNA-directed RNA polymerase II subunit RPB7 [Salmo salar]
Length = 172
Score = 295 bits (754), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 138/170 (81%), Positives = 157/170 (92%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIG +SCFIS HSIP++M+F
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGSMSCFISRHSIPSEMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CYK+ ++VIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct: 121 PNSNPPCYKTTDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 170
>gi|226372376|gb|ACO51813.1| DNA-directed RNA polymerase II subunit RPB7 [Rana catesbeiana]
Length = 172
Score = 295 bits (754), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 139/170 (81%), Positives = 158/170 (92%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPVKY+AIVFRPFKGEV+DAVV+QVNKVG+F EIGP+SCFIS HSIP++M+F
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVSQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CYK+V +VVIQ+ DEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct: 121 PNSNPPCYKTVDEDVVIQQGDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 170
>gi|73586691|gb|AAI03081.1| Polymerase (RNA) II (DNA directed) polypeptide G [Bos taurus]
Length = 172
Score = 294 bits (753), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 138/170 (81%), Positives = 158/170 (92%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKY FVIAVTTID+IGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYCFVIAVTTIDNIGAGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CYK++ ++VIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 170
>gi|327289535|ref|XP_003229480.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Anolis
carolinensis]
Length = 202
Score = 294 bits (752), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 138/169 (81%), Positives = 158/169 (93%)
Query: 2 FYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQP 61
FY+ISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQP
Sbjct: 32 FYYISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQP 91
Query: 62 GQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCP 121
G+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F P
Sbjct: 92 GRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDP 151
Query: 122 NSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
NSNP CYK++ +VVIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct: 152 NSNPPCYKTIDEDVVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 200
>gi|431910359|gb|ELK13432.1| DNA-directed RNA polymerase II subunit RPB7 [Pteropus alecto]
Length = 223
Score = 293 bits (750), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 136/170 (80%), Positives = 158/170 (92%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CYK++ ++VI++DDEIRLKIVGTRVD + IFAIG+LMDDYL +
Sbjct: 121 PNSNPPCYKTMDEDIVIKQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLAM 170
>gi|198430459|ref|XP_002120172.1| PREDICTED: similar to DNA directed RNA polymerase II polypeptide G
[Ciona intestinalis]
Length = 172
Score = 292 bits (748), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 139/170 (81%), Positives = 157/170 (92%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L ETVKQKL++EVEGTCTGK+GFVIAVTTID+IG GLIQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLETVKQKLFTEVEGTCTGKHGFVIAVTTIDNIGDGLIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YP+KY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP DM+F
Sbjct: 61 PGRGFVLYPIKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPADMKFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
P S+P CYK+ +VVIQ+DDEIRLKIVGTRVDA+ IFAIG+LMDDYLGL
Sbjct: 121 PESHPPCYKTDDEDVVIQQDDEIRLKIVGTRVDANDIFAIGSLMDDYLGL 170
>gi|405952867|gb|EKC20626.1| DNA-directed RNA polymerase II subunit RPB7 [Crassostrea gigas]
Length = 191
Score = 292 bits (748), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 139/170 (81%), Positives = 153/170 (90%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYH+SLEHEILLHPRYFGP L VKQKL++EVEGTCTGKYGFVIAVTTID+IGAG IQ
Sbjct: 1 MFYHVSLEHEILLHPRYFGPNLLNIVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGTIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P +GFVVYPVKY+AIVFRPFKGEVLDAVVTQVNKVG+F EIGPLSCF+S HSIP +M+F
Sbjct: 61 PSRGFVVYPVKYKAIVFRPFKGEVLDAVVTQVNKVGLFTEIGPLSCFVSRHSIPANMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CYK+ + VIQ+DDEIRLKIVGTRVDA IFAIGTLMDDYLG+
Sbjct: 121 PNSNPPCYKNKEEDEVIQQDDEIRLKIVGTRVDAKDIFAIGTLMDDYLGV 170
>gi|391343700|ref|XP_003746144.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Metaseiulus occidentalis]
Length = 174
Score = 291 bits (745), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 143/169 (84%), Positives = 152/169 (89%), Gaps = 1/169 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGPQL ETVKQKL++EVEGTCTGKYGFVIAVT IDSIG GLIQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPQLMETVKQKLFTEVEGTCTGKYGFVIAVTAIDSIGDGLIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P +GFVVYPVKY+AIVFRPFKGEVLDAVVTQVNKVG+F EIGPLSCFIS HSIP DMQF
Sbjct: 61 PNRGFVVYPVKYKAIVFRPFKGEVLDAVVTQVNKVGIFTEIGPLSCFISRHSIPPDMQFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PNS P CYK+ + IQ DD+IRLKIVGTRVDA+ IFAIGTLMDDYLG
Sbjct: 121 PNSTPPCYKNAEDD-CIQADDDIRLKIVGTRVDATDIFAIGTLMDDYLG 168
>gi|443718113|gb|ELU08859.1| hypothetical protein CAPTEDRAFT_177843 [Capitella teleta]
Length = 172
Score = 291 bits (745), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 137/170 (80%), Positives = 157/170 (92%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYH+SLEHEILLHP+YFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 1 MFYHVSLEHEILLHPQYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGIIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPVKY+AIVFRPFKGEVLDAVVTQVNKVG+F EIGPLSCFIS HSIP++ +F
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVLDAVVTQVNKVGLFTEIGPLSCFISRHSIPSEYEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PN+NP CYK+ +++IQ D+EIRLKIVGTRVDAS IFAIGTLMDDYLG+
Sbjct: 121 PNNNPPCYKTKDEDILIQTDNEIRLKIVGTRVDASDIFAIGTLMDDYLGV 170
>gi|225709388|gb|ACO10540.1| DNA-directed RNA polymerase II subunit RPB7 [Caligus rogercresseyi]
Length = 172
Score = 290 bits (743), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 139/170 (81%), Positives = 152/170 (89%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHI L+HEI LHPRYFGP L + VKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 1 MFYHICLDHEIRLHPRYFGPTLLDRVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGIIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG GFV+YPVKY+AIVFRPFKGEVLDAVVTQVNKVG+F EIGP SCFIS HSIP DM F
Sbjct: 61 PGNGFVIYPVKYKAIVFRPFKGEVLDAVVTQVNKVGLFTEIGPPSCFISRHSIPADMTFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CYK+ + EV I +DD+IRLKIVGTRVDAS IFAIGTLMDDYLGL
Sbjct: 121 PNSNPPCYKTNNEEVTIHQDDDIRLKIVGTRVDASDIFAIGTLMDDYLGL 170
>gi|156378584|ref|XP_001631222.1| predicted protein [Nematostella vectensis]
gi|156218258|gb|EDO39159.1| predicted protein [Nematostella vectensis]
Length = 172
Score = 290 bits (741), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 135/169 (79%), Positives = 155/169 (91%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L +TVKQKL++EVEGTC+GKYGF+IAVTTID+IG G IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLQTVKQKLFTEVEGTCSGKYGFIIAVTTIDNIGVGHIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFVVYPVKY+AIVFRPFKGEVLDAV+TQVNK+G+F EIGPLSCF+S HSIP DM+F
Sbjct: 61 PGRGFVVYPVKYKAIVFRPFKGEVLDAVITQVNKLGLFTEIGPLSCFVSRHSIPPDMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PNSNP CYK+ +VV Q+DDEIRL++VGTRVDA+ IFAIG+LMDDYLG
Sbjct: 121 PNSNPPCYKTKDEDVVYQQDDEIRLRVVGTRVDANDIFAIGSLMDDYLG 169
>gi|387018224|gb|AFJ51230.1| DNA-directed RNA polymerase II subunit RPB7-like [Crotalus
adamanteus]
Length = 172
Score = 289 bits (739), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 135/170 (79%), Positives = 156/170 (91%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPVKY+AIVFRPFKGEV+DA+VTQVNKVG+F EIGP+SCFIS HSIP++M++
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAIVTQVNKVGLFTEIGPMSCFISRHSIPSEMEYD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
NSNP CYK+V ++VIQ +D IRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct: 121 TNSNPPCYKTVDEDIVIQPEDNIRLKIVGTRVDKNDIFAIGSLMDDYLGL 170
>gi|417408664|gb|JAA50874.1| Putative dna-directed rna polymerase ii subunit rpb7-like protein,
partial [Desmodus rotundus]
Length = 209
Score = 289 bits (739), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 135/167 (80%), Positives = 155/167 (92%)
Query: 4 HISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQ 63
ISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQPG+
Sbjct: 41 QISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGR 100
Query: 64 GFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNS 123
GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F PNS
Sbjct: 101 GFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNS 160
Query: 124 NPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
NP CYK++ ++VIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct: 161 NPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 207
>gi|90081264|dbj|BAE90112.1| unnamed protein product [Macaca fascicularis]
Length = 221
Score = 288 bits (738), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 135/167 (80%), Positives = 155/167 (92%)
Query: 4 HISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQ 63
ISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQPG+
Sbjct: 53 QISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGR 112
Query: 64 GFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNS 123
GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F PNS
Sbjct: 113 GFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNS 172
Query: 124 NPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
NP CYK++ ++VIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct: 173 NPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 219
>gi|281352567|gb|EFB28151.1| hypothetical protein PANDA_014914 [Ailuropoda melanoleuca]
Length = 165
Score = 286 bits (732), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 134/165 (81%), Positives = 154/165 (93%)
Query: 5 ISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQG 64
ISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQPG+G
Sbjct: 1 ISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRG 60
Query: 65 FVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSN 124
FV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F PNSN
Sbjct: 61 FVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSN 120
Query: 125 PVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
P CYK++ ++VIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLG
Sbjct: 121 PPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLG 165
>gi|312072366|ref|XP_003139033.1| polymerase [Loa loa]
gi|307765805|gb|EFO25039.1| DNA-directed RNA polymerase II subunit RPB7 [Loa loa]
Length = 174
Score = 285 bits (728), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 132/170 (77%), Positives = 154/170 (90%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHI L+HEI LHP+YFGP L ETVK+KL++EVEGTCTGKYGFV+AVTTID+IGAGLIQ
Sbjct: 1 MFYHIPLDHEICLHPKYFGPDLLETVKRKLFNEVEGTCTGKYGFVVAVTTIDNIGAGLIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPVKY+AIVFRPFKG+V+DAVV QVNKVG+F +IGPLSCF+S H IP DM+F
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGQVVDAVVNQVNKVGLFCDIGPLSCFVSRHCIPPDMEFE 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CYK+ VVI++DDEIR+K++GTRVDAS IFAIGTLMDDYLGL
Sbjct: 121 PNSNPPCYKTADESVVIKQDDEIRVKLIGTRVDASDIFAIGTLMDDYLGL 170
>gi|339522289|gb|AEJ84309.1| DNA-directed RNA polymerase II subunit G [Capra hircus]
Length = 172
Score = 285 bits (728), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 135/170 (79%), Positives = 154/170 (90%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISL EILL PRYFGP L TVKQKL++E EGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 1 MFYHISLGPEILLPPRYFGPNLLNTVKQKLFTEAEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M F
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMGFY 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CYK++ ++VIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 170
>gi|405954685|gb|EKC22056.1| DNA-directed RNA polymerase II subunit RPB7, partial [Crassostrea
gigas]
Length = 167
Score = 283 bits (724), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 135/166 (81%), Positives = 149/166 (89%)
Query: 5 ISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQG 64
+SLEHEILLHPRYFGP L VKQKL++EVEGTCTGKYGFVIAVTTID+IGAG IQP +G
Sbjct: 1 VSLEHEILLHPRYFGPNLLNIVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGTIQPSRG 60
Query: 65 FVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSN 124
FVVYPVKY+AIVFRPFKGEVLDAVVTQVNKVG+F EIGPLSCF+S HSIP +M+F PNSN
Sbjct: 61 FVVYPVKYKAIVFRPFKGEVLDAVVTQVNKVGLFTEIGPLSCFVSRHSIPANMEFDPNSN 120
Query: 125 PVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
P CYK+ + VIQ+DDEIRLKIVGTRVDA IFAIGTLMDDYLG+
Sbjct: 121 PPCYKNKEEDEVIQQDDEIRLKIVGTRVDAKDIFAIGTLMDDYLGV 166
>gi|324530828|gb|ADY49116.1| DNA-directed RNA polymerase II subunit RPB7 [Ascaris suum]
Length = 174
Score = 283 bits (724), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 131/170 (77%), Positives = 156/170 (91%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHI LEHEI LHP+YFGP+L ETVK+KL++EVEGTCTGKYGFVIAVTTID+IG+GLIQ
Sbjct: 1 MFYHIPLEHEICLHPKYFGPELLETVKRKLFNEVEGTCTGKYGFVIAVTTIDNIGSGLIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFVVYPVKY+AIVFRPFKG+V+DAVV+QVNKVG+F +IGP+SCF+S H IP DM+F
Sbjct: 61 PGRGFVVYPVKYKAIVFRPFKGQVVDAVVSQVNKVGIFCDIGPMSCFVSRHCIPPDMEFE 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PN+NP CYK+ VVI++DDEIR+K++GTRVDA+ IFAIGTLMDDYLGL
Sbjct: 121 PNANPPCYKTQDESVVIKQDDEIRVKLIGTRVDAADIFAIGTLMDDYLGL 170
>gi|440898152|gb|ELR49707.1| DNA-directed RNA polymerase II subunit RPB7, partial [Bos grunniens
mutus]
Length = 163
Score = 276 bits (705), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 132/165 (80%), Positives = 151/165 (91%), Gaps = 2/165 (1%)
Query: 5 ISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQG 64
ISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQPG+G
Sbjct: 1 ISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRG 60
Query: 65 FVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSN 124
FV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F PNSN
Sbjct: 61 FVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSN 120
Query: 125 PVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
P CYK++ ++VI DEIRLKIVGTRVD + IFAIG+LMDDYLG
Sbjct: 121 PPCYKTMDEDIVIH--DEIRLKIVGTRVDKNDIFAIGSLMDDYLG 163
>gi|354469798|ref|XP_003497310.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cricetulus griseus]
Length = 172
Score = 275 bits (703), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 131/170 (77%), Positives = 152/170 (89%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHP YFGP L TVKQKL++EVEGTC GKY FVIAVTTID+IGAG IQ
Sbjct: 1 MFYHISLEHEILLHPCYFGPNLLNTVKQKLFTEVEGTCKGKYDFVIAVTTIDNIGAGEIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PGQGF ++ VK++AIVF+PFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F
Sbjct: 61 PGQGFDLHTVKFKAIVFQPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CYK++ ++VIQ+DDEIRLKIVGTRVD + IFAIG+ MDDYLGL
Sbjct: 121 PNSNPPCYKTMGEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSPMDDYLGL 170
>gi|297688430|ref|XP_002821689.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB7 [Pongo abelii]
Length = 229
Score = 275 bits (702), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 131/168 (77%), Positives = 150/168 (89%), Gaps = 1/168 (0%)
Query: 4 HISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQ 63
ISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG G+
Sbjct: 60 EISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGGSSQGR 119
Query: 64 GFVV-YPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPN 122
G +V YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F PN
Sbjct: 120 GLLVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPN 179
Query: 123 SNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
SNP CYK++ ++VIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct: 180 SNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 227
>gi|170592835|ref|XP_001901170.1| polymerase [Brugia malayi]
gi|158591237|gb|EDP29850.1| polymerase, putative [Brugia malayi]
Length = 171
Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 129/170 (75%), Positives = 152/170 (89%), Gaps = 3/170 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHI L+HEI LHP+YFGP L ETVK+KL++EVEGTCTGKYGFV+AVTTID+IGAGLIQ
Sbjct: 1 MFYHIPLDHEICLHPKYFGPDLLETVKRKLFNEVEGTCTGKYGFVVAVTTIDNIGAGLIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPVKY+AIVFRPFKG+V+DAV VN+VG+F +IGPLSCF+S H IP DM+F
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGQVVDAV---VNQVGLFCDIGPLSCFVSRHCIPPDMEFE 117
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CYK+ VVI++DDEIR+K++GTRVDAS IFAIGTLMDDYLGL
Sbjct: 118 PNSNPPCYKTADESVVIKQDDEIRVKLIGTRVDASDIFAIGTLMDDYLGL 167
>gi|149062301|gb|EDM12724.1| polymerase (RNA) II (DNA directed) polypeptide G, isoform CRA_c
[Rattus norvegicus]
Length = 159
Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 127/157 (80%), Positives = 146/157 (92%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGI 157
PNSNP CYK++ ++VIQ+DDEIRLKIVGTRVD + I
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDI 157
>gi|148701426|gb|EDL33373.1| polymerase (RNA) II (DNA directed) polypeptide G, isoform CRA_c
[Mus musculus]
Length = 159
Score = 272 bits (696), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 127/157 (80%), Positives = 146/157 (92%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGI 157
PNSNP CYK++ ++VIQ+DDEIRLKIVGTRVD + I
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDI 157
>gi|341885978|gb|EGT41913.1| CBN-RPB-7 protein [Caenorhabditis brenneri]
gi|341897170|gb|EGT53105.1| hypothetical protein CAEBREN_28990 [Caenorhabditis brenneri]
Length = 174
Score = 271 bits (692), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 125/170 (73%), Positives = 150/170 (88%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+H+SL+HE+ LHP+YFGP L ET+KQKL++EVEGTCTGKYGFVIAVTTID+IG GLIQ
Sbjct: 1 MFFHLSLDHEVCLHPKYFGPNLNETIKQKLFNEVEGTCTGKYGFVIAVTTIDTIGHGLIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPV+Y+AIVFRPFKG+V+D VV+QVNKVG+F +IGPLSCFIS H IP DM+F
Sbjct: 61 PGRGFVIYPVRYKAIVFRPFKGQVVDGVVSQVNKVGIFCDIGPLSCFISRHCIPPDMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNS CYK+ VI+ DDEIR+K++GTRVDA+ IFAIGTLMDDYLGL
Sbjct: 121 PNSEKPCYKTNDEATVIRNDDEIRVKLIGTRVDANDIFAIGTLMDDYLGL 170
>gi|308473109|ref|XP_003098780.1| CRE-RPB-7 protein [Caenorhabditis remanei]
gi|308268076|gb|EFP12029.1| CRE-RPB-7 protein [Caenorhabditis remanei]
Length = 174
Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 124/170 (72%), Positives = 149/170 (87%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+H+SL+HE+ LHP+YFGP L ET+K KL++EVEGTCTGKYGFVIAVTTID+IG GLIQ
Sbjct: 1 MFFHLSLDHEVCLHPKYFGPNLNETIKMKLFNEVEGTCTGKYGFVIAVTTIDTIGHGLIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPV+Y+AIVFRPFKG+V+D VVTQVNKVG+F +IGPLSCFIS H IP DM+F
Sbjct: 61 PGRGFVIYPVRYKAIVFRPFKGQVVDGVVTQVNKVGIFCDIGPLSCFISRHCIPPDMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNS CYK+ +I+ DDEIR+K++GTRVDA+ IFAIGTLMDDYLGL
Sbjct: 121 PNSEKPCYKTNDEATIIRNDDEIRVKLIGTRVDANDIFAIGTLMDDYLGL 170
>gi|268565845|ref|XP_002639564.1| C. briggsae CBR-RPB-7 protein [Caenorhabditis briggsae]
Length = 197
Score = 269 bits (688), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 124/170 (72%), Positives = 149/170 (87%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+H+SL+HE+ LHP+YFGP L ET+K KL++EVEGTCTGKYGFVIAVTTID+IG GLIQ
Sbjct: 24 MFFHLSLDHEVCLHPKYFGPNLNETIKAKLFNEVEGTCTGKYGFVIAVTTIDTIGHGLIQ 83
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPV+Y+AIVFRPFKG+V+D VVTQVNKVG+F +IGPLSCFIS H IP DM+F
Sbjct: 84 PGRGFVIYPVRYKAIVFRPFKGQVVDGVVTQVNKVGIFCDIGPLSCFISRHCIPPDMEFD 143
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNS CYK+ VI+ DDEIR+K++GTRVDA+ IFAIGTLMDD+LGL
Sbjct: 144 PNSEKPCYKTNDEATVIRNDDEIRVKLIGTRVDANDIFAIGTLMDDFLGL 193
>gi|17510349|ref|NP_491093.1| Protein RPB-7 [Caenorhabditis elegans]
gi|351064549|emb|CCD72992.1| Protein RPB-7 [Caenorhabditis elegans]
Length = 197
Score = 269 bits (688), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 124/170 (72%), Positives = 149/170 (87%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+H+SL+HE+ LHP+YFGP L ET+K KL++EVEGTCTGKYGFVIAVTTID+IG GLIQ
Sbjct: 24 MFFHLSLDHEVCLHPKYFGPNLNETIKMKLFNEVEGTCTGKYGFVIAVTTIDTIGHGLIQ 83
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPV+Y+AIVFRPFKG+V+D VVTQVNKVG+F +IGPLSCFIS H IP DM+F
Sbjct: 84 PGRGFVIYPVRYKAIVFRPFKGQVVDGVVTQVNKVGIFCDIGPLSCFISRHCIPPDMEFD 143
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNS CYK+ VI+ DDEIR+K++GTRVDA+ IFAIGTLMDD+LGL
Sbjct: 144 PNSEKPCYKTNDEANVIRNDDEIRVKLIGTRVDANDIFAIGTLMDDFLGL 193
>gi|340373532|ref|XP_003385295.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Amphimedon queenslandica]
Length = 172
Score = 263 bits (672), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 120/170 (70%), Positives = 150/170 (88%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+HI LEHEILLHPRYFGP L ETVK+KL++EVEGTCTGK+GFVIAVTTID+IG G++Q
Sbjct: 1 MFFHIPLEHEILLHPRYFGPNLLETVKKKLFTEVEGTCTGKHGFVIAVTTIDNIGLGMLQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G+G +YPVKY+AIVFRPFKGEVLDA+V QVNK+G+F +IGPL+CFIS HSIP +M+F
Sbjct: 61 TGRGVALYPVKYKAIVFRPFKGEVLDALVIQVNKLGLFTQIGPLTCFISRHSIPPEMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNS P CY++ +V+IQE + +R++IVGTRVDA+ IFA+G+LM+DYLGL
Sbjct: 121 PNSTPHCYRTSESDVLIQEGNYLRVRIVGTRVDANDIFAVGSLMEDYLGL 170
>gi|313230246|emb|CBY07950.1| unnamed protein product [Oikopleura dioica]
Length = 172
Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 114/169 (67%), Positives = 143/169 (84%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHI+LEHE+L+HP YFG L +T++QKLYSEVEG+CTG++GFVI VT I SIG G I
Sbjct: 1 MFYHINLEHELLIHPMYFGENLTDTIRQKLYSEVEGSCTGEHGFVIGVTNIHSIGDGDIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G+GF ++P+KY AIVFRPFKGEV+D VVTQVNKVG+ ++GP++CFIS HSIP+DM+F
Sbjct: 61 AGRGFCLFPIKYAAIVFRPFKGEVVDGVVTQVNKVGLMVDVGPMACFISKHSIPSDMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
P+SNP CYK+ + I++DDEIRLKIVGTRVD + IF+IG+LMDDYLG
Sbjct: 121 PDSNPPCYKTKDEDTAIKQDDEIRLKIVGTRVDVNEIFSIGSLMDDYLG 169
>gi|196007472|ref|XP_002113602.1| hypothetical protein TRIADDRAFT_50378 [Trichoplax adhaerens]
gi|190584006|gb|EDV24076.1| hypothetical protein TRIADDRAFT_50378 [Trichoplax adhaerens]
Length = 172
Score = 244 bits (623), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 110/169 (65%), Positives = 140/169 (82%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+H++LEHEI LHPRYFGP L +TV++KL+SEVEGTC+GK+GFVIAVT ID +G G I
Sbjct: 1 MFFHVTLEHEITLHPRYFGPNLLDTVRRKLFSEVEGTCSGKHGFVIAVTIIDKVGVGKIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P GFVVYPV+Y+AIVF+PF GEV+D +VTQ+NKVG+F E+GPL+CFIS +SIP DM F
Sbjct: 61 PNSGFVVYPVRYKAIVFKPFPGEVVDGIVTQLNKVGLFVEVGPLTCFISKYSIPRDMFFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PN NP C+++ ++++Q DE+RLKIVGTRVD IFA+G+L DYLG
Sbjct: 121 PNGNPPCFRTEDEDMIVQTGDEVRLKIVGTRVDVKDIFAVGSLDQDYLG 169
>gi|241176966|ref|XP_002399817.1| DNA-directed RNA polymerase subunit E', putative [Ixodes
scapularis]
gi|215495205|gb|EEC04846.1| DNA-directed RNA polymerase subunit E', putative [Ixodes
scapularis]
Length = 173
Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 120/164 (73%), Positives = 134/164 (81%)
Query: 3 YHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPG 62
+ ISL+HEILLHPRYFGPQL ETVKQKLY+EVEGTCTGKYGFV+AV TID+IGAGLIQPG
Sbjct: 1 FQISLDHEILLHPRYFGPQLEETVKQKLYAEVEGTCTGKYGFVVAVMTIDNIGAGLIQPG 60
Query: 63 QGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPN 122
+GFVVYPV+Y AIVFRPFKGEVLDAVVTQVNKV S IS SIP+DMQF PN
Sbjct: 61 RGFVVYPVRYTAIVFRPFKGEVLDAVVTQVNKVSGVGAPDTDSVCISFQSIPSDMQFDPN 120
Query: 123 SNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDD 166
SNP CY++ +V+IQ+DDEIRLKIVGTRVDAS I + D
Sbjct: 121 SNPPCYRTQDEDVIIQQDDEIRLKIVGTRVDASDIVSCSPASSD 164
>gi|348564204|ref|XP_003467895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Cavia
porcellus]
Length = 209
Score = 238 bits (606), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 116/170 (68%), Positives = 134/170 (78%), Gaps = 25/170 (14%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 63 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 122
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YP VG+F EIGP+SCFIS HSIP++M+F
Sbjct: 123 PGRGFVLYP-------------------------VGLFTEIGPMSCFISRHSIPSEMEFD 157
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CYK++ ++VIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct: 158 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 207
>gi|224110118|ref|XP_002198109.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like,
partial [Taeniopygia guttata]
Length = 133
Score = 235 bits (600), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 108/131 (82%), Positives = 124/131 (94%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID++GAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNVGAGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPV+Y+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F
Sbjct: 61 PGRGFVLYPVRYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 121 PNSNPVCYKSV 131
PNSNP CYK+V
Sbjct: 121 PNSNPPCYKTV 131
>gi|332249762|ref|XP_003274027.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Nomascus
leucogenys]
Length = 134
Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 104/130 (80%), Positives = 122/130 (93%)
Query: 41 KYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAE 100
KYGFVIAVTTID+IGAG+IQPG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F E
Sbjct: 3 KYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTE 62
Query: 101 IGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAI 160
IGP+SCFIS HSIP++M+F PNSNP CYK++ ++VIQ+DDEIRLKIVGTRVD + IFAI
Sbjct: 63 IGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAI 122
Query: 161 GTLMDDYLGL 170
G+LMDDYLGL
Sbjct: 123 GSLMDDYLGL 132
>gi|395852612|ref|XP_003798829.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Otolemur
garnettii]
Length = 170
Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 115/170 (67%), Positives = 128/170 (75%), Gaps = 31/170 (18%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKV
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKV------------------------- 95
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
P K ++VIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYL L
Sbjct: 96 ---RPYIGKP---DIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLDL 139
>gi|56757637|gb|AAW26970.1| SJCHGC02592 protein [Schistosoma japonicum]
Length = 175
Score = 214 bits (545), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 108/172 (62%), Positives = 137/172 (79%), Gaps = 3/172 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHI LEHEILLHP+YFGP L ETVK KL+S+VEGTC+GKYGF+IAVT I+ IGAG+IQ
Sbjct: 1 MFYHIKLEHEILLHPKYFGPNLTETVKTKLFSDVEGTCSGKYGFIIAVTNIEHIGAGIIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQF- 119
P +GFV Y + YRAIV+RPFKGEV+DA+VTQV KVG+FAE GPL+ FIS +S+P++++F
Sbjct: 61 PNRGFVQYRIVYRAIVYRPFKGEVVDAIVTQVTKVGVFAEAGPLTIFISKYSVPSNIKFE 120
Query: 120 --CPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
++ + +Q +D IR++I+G RVDAS IFA+GTLMDDYLG
Sbjct: 121 GAETTTDGLNDDDEEESQTVQIEDRIRIRIIGLRVDASDIFAVGTLMDDYLG 172
>gi|226468572|emb|CAX69963.1| polymerase (RNA) II (DNA directed) polypeptide G [Schistosoma
japonicum]
Length = 175
Score = 211 bits (538), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 107/172 (62%), Positives = 136/172 (79%), Gaps = 3/172 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHI LEHEILLHP+Y GP L ETVK KL+S+VEGTC+GKYGF+IAVT I+ IGAG+IQ
Sbjct: 1 MFYHIKLEHEILLHPKYSGPNLTETVKTKLFSDVEGTCSGKYGFIIAVTNIEHIGAGIIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQF- 119
P +GFV Y + YRAIV+RPFKGEV+DA+VTQV KVG+FAE GPL+ FIS +S+P++++F
Sbjct: 61 PNRGFVQYRIVYRAIVYRPFKGEVVDAIVTQVTKVGVFAEAGPLTIFISKYSVPSNIKFE 120
Query: 120 --CPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
++ + +Q +D IR++I+G RVDAS IFA+GTLMDDYLG
Sbjct: 121 GAETTTDGLNDDDEEESQTVQIEDRIRIRIIGLRVDASDIFAVGTLMDDYLG 172
>gi|255558950|ref|XP_002520498.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
[Ricinus communis]
gi|223540340|gb|EEF41911.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
[Ricinus communis]
Length = 176
Score = 211 bits (537), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 99/170 (58%), Positives = 129/170 (75%), Gaps = 1/170 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+HI LE + LHPRYFG L E + KL +VEGTC+G++GFV+A+T I+S+G GLI+
Sbjct: 1 MFFHIVLERNMQLHPRYFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIESVGKGLIR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G GFV +PVKY+ +VFRPFKGE+L+AVVT VNK+G FAE GP+ F+S+H IP DM+F
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
P Y + G V IQ+D E+RLKI+GTRVDA+ IF IGT+ DD+LG+
Sbjct: 121 SGDMP-NYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGV 169
>gi|168056096|ref|XP_001780058.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668556|gb|EDQ55161.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 177
Score = 211 bits (537), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 99/170 (58%), Positives = 132/170 (77%), Gaps = 1/170 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+HI L+ + LHPR+FGP L + + KL +VEGTC+G++GFV+AVT +++IG+GLI+
Sbjct: 1 MFFHIYLDRNLQLHPRHFGPHLRDKLIAKLIQDVEGTCSGRHGFVVAVTAVETIGSGLIR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G GFV +PVKY+ +VFRPFKGE+L++VVT VNK+G FAE GP+ F+S+H IP DM F
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILESVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMAFQ 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
+ P YK+ G V IQ+D E+RLKIVGTRVDA+ IF IGT+ DD+LGL
Sbjct: 121 SDDVP-NYKTSDGSVRIQKDSEVRLKIVGTRVDATEIFCIGTIKDDFLGL 169
>gi|302754896|ref|XP_002960872.1| hypothetical protein SELMODRAFT_75793 [Selaginella moellendorffii]
gi|302767440|ref|XP_002967140.1| hypothetical protein SELMODRAFT_87027 [Selaginella moellendorffii]
gi|300165131|gb|EFJ31739.1| hypothetical protein SELMODRAFT_87027 [Selaginella moellendorffii]
gi|300171811|gb|EFJ38411.1| hypothetical protein SELMODRAFT_75793 [Selaginella moellendorffii]
Length = 177
Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 98/170 (57%), Positives = 130/170 (76%), Gaps = 1/170 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+HI LE + LHPR+FGPQL + + +KL +VEGTC+G++GFV+AVT +D+IG GLI+
Sbjct: 1 MFFHIRLERNLQLHPRFFGPQLRDKLVEKLIHDVEGTCSGRHGFVVAVTGVDTIGKGLIR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G+V +P+ Y+ +VFRPFKGE+L+ VVT VNK+G FAE GP+ F+S+H IP DM F
Sbjct: 61 DGTGYVTFPIHYQCVVFRPFKGEILEGVVTLVNKMGFFAEAGPVQIFVSNHLIPDDMSFQ 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
P CY++ V IQ+D E+RLKIVGTRVDA+ IF IGT+ DD+LGL
Sbjct: 121 SGDVP-CYETSDSSVRIQKDSEVRLKIVGTRVDATEIFCIGTIKDDFLGL 169
>gi|224056563|ref|XP_002298912.1| predicted protein [Populus trichocarpa]
gi|222846170|gb|EEE83717.1| predicted protein [Populus trichocarpa]
Length = 176
Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/170 (57%), Positives = 129/170 (75%), Gaps = 1/170 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+HI LE + LHPR+FG L E + KL +VEGTC+G++GFV+A+T I++IG GLI+
Sbjct: 1 MFFHIVLERNMQLHPRFFGRNLRENIVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G GFV +PVKY+ +VFRPFKGE+L+AVVT VNK+G FAE GP+ F+S+H IP DM+F
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
P Y + G V IQ+D E+RLKI+GTRVDA+ IF IGT+ DD+LG+
Sbjct: 121 TGDMP-NYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGV 169
>gi|351722267|ref|NP_001236982.1| DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
gi|356512183|ref|XP_003524800.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Glycine max]
gi|1173137|sp|P46279.1|RPB7_SOYBN RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7
gi|170052|gb|AAA34005.1| RNA polymerase II [Glycine max]
gi|255626843|gb|ACU13766.1| unknown [Glycine max]
Length = 176
Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 99/170 (58%), Positives = 129/170 (75%), Gaps = 1/170 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+HI LE + LHPRYFG L + + KL +VEGTC+G++GFV+AVT I++IG GLI+
Sbjct: 1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G GFV +PVKY+ +VFRPFKGE+L+AVVT VNK+G FAE GP+ F+S+H IP DM+F
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
P Y + G V IQ+D E+RLKI+GTRVDA+ IF IGT+ DD+LG+
Sbjct: 121 SGDMP-NYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGV 169
>gi|339252426|ref|XP_003371436.1| DNA-directed RNA polymerase II subunit RPB7 [Trichinella spiralis]
gi|316968324|gb|EFV52617.1| DNA-directed RNA polymerase II subunit RPB7 [Trichinella spiralis]
Length = 172
Score = 209 bits (532), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 99/170 (58%), Positives = 129/170 (75%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ ++LEH++LLHPRYFGP LY TV+QKL EVEG C GKYGF+I VT I SIGAGL+Q
Sbjct: 1 MFFLMNLEHDVLLHPRYFGPHLYNTVRQKLILEVEGQCMGKYGFIITVTGILSIGAGLVQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G GFV +P+KY+A+V+RP K EV++ V V+K+G+F +GPL+ FIS H IP D+ F
Sbjct: 61 SGCGFVRFPIKYQAVVYRPIKNEVVEGRVENVSKLGLFCLVGPLTVFISRHCIPHDLIFR 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
P + P+ Y + + I + +RLKI+GTRVDA+ IFAIGTLMDDYLG+
Sbjct: 121 PTAQPMSYCNEDESIEITVNMNLRLKILGTRVDANNIFAIGTLMDDYLGV 170
>gi|388502464|gb|AFK39298.1| unknown [Lotus japonicus]
Length = 176
Score = 209 bits (531), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 98/170 (57%), Positives = 129/170 (75%), Gaps = 1/170 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+HI LE + LHPRYFG L + + KL +VEGTC+G++GFV+AVT I+++G GLI+
Sbjct: 1 MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G GFV +PVKY+ +VFRPFKGE+L+AVVT VNK+G FAE GP+ F+S+H IP DM+F
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
P Y + G V IQ+D E+RLKI+GTRVDA+ IF IGT+ DD+LG+
Sbjct: 121 SGDMP-NYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGV 169
>gi|357476433|ref|XP_003608502.1| DNA-directed RNA polymerase II subunit RPB7 [Medicago truncatula]
gi|217071674|gb|ACJ84197.1| unknown [Medicago truncatula]
gi|355509557|gb|AES90699.1| DNA-directed RNA polymerase II subunit RPB7 [Medicago truncatula]
gi|388514911|gb|AFK45517.1| unknown [Medicago truncatula]
Length = 176
Score = 208 bits (530), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 98/170 (57%), Positives = 129/170 (75%), Gaps = 1/170 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+HI LE + LHPRYFG L + + KL +VEGTC+G++GFV+AVT I++IG G+I+
Sbjct: 1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGIIR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G GFV +PVKY+ +VFRPFKGE+L+AVVT VNK+G FAE GP+ F+S+H IP DM+F
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
P Y + G V IQ+D E+RLKI+GTRVDA+ IF IGT+ DD+LG+
Sbjct: 121 TGDMP-NYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGV 169
>gi|449466050|ref|XP_004150740.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449518487|ref|XP_004166273.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
Length = 176
Score = 208 bits (530), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 98/170 (57%), Positives = 129/170 (75%), Gaps = 1/170 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+HI LE + LHPR+FG L E + KL +VEGTC+G++GFV+A+T I++IG GLI+
Sbjct: 1 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G GFV +PVKY+ +VFRPFKGE+L+AVVT VNK+G FAE GP+ F+S+H IP DM+F
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
P Y + G V IQ+D E+RLKI+GTRVDA+ IF IGT+ DD+LG+
Sbjct: 121 SGDVP-NYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGV 169
>gi|15237831|ref|NP_200726.1| DNA-directed RNA polymerase II subunit RPB7 [Arabidopsis thaliana]
gi|585917|sp|P38421.1|RPB7_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7
gi|166854|gb|AAA32861.1| RNA polymerase II [Arabidopsis thaliana]
gi|9759239|dbj|BAB09763.1| DNA-directed RNA polymerase II 19 kD polypeptide (RNA polymerase II
subunit 5) [Arabidopsis thaliana]
gi|26452908|dbj|BAC43532.1| putative RNA polymerase II [Arabidopsis thaliana]
gi|28973525|gb|AAO64087.1| putative RNA polymerase II [Arabidopsis thaliana]
gi|332009771|gb|AED97154.1| DNA-directed RNA polymerase II subunit RPB7 [Arabidopsis thaliana]
Length = 176
Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 97/170 (57%), Positives = 128/170 (75%), Gaps = 1/170 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+HI LE + LHPR+FG L E + KL +VEGTC+G++GFV+A+T ID+IG GLI+
Sbjct: 1 MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G GFV +PVKY+ +VFRPFKGE+L+AVVT VNK+G FAE GP+ F+S H IP DM+F
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
P Y + G V IQ++ E+RLKI+GTRVDA+ IF +GT+ DD+LG+
Sbjct: 121 AGDMP-NYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGV 169
>gi|357133761|ref|XP_003568492.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Brachypodium distachyon]
Length = 177
Score = 206 bits (524), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 96/170 (56%), Positives = 129/170 (75%), Gaps = 1/170 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+HI LE + LHPR+FGP L + + KL +VEGTC+G++GFV+A+T ++ IG GLI+
Sbjct: 1 MFFHIVLERNMQLHPRHFGPHLRDKLVAKLMKDVEGTCSGRHGFVVAITGVEDIGKGLIR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G GFV +PVKY+ +VFRPFKGE+L+AVVT VNK+G FAE GP+ F+S+H IP DM+F
Sbjct: 61 EGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
P Y + G V IQ++ E+RLKI+GTRVDA+ IF IGT+ DD+LG+
Sbjct: 121 SGDVP-NYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGV 169
>gi|225434800|ref|XP_002282298.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Vitis
vinifera]
gi|147841138|emb|CAN75204.1| hypothetical protein VITISV_042914 [Vitis vinifera]
gi|297745997|emb|CBI16053.3| unnamed protein product [Vitis vinifera]
Length = 176
Score = 206 bits (524), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 96/170 (56%), Positives = 129/170 (75%), Gaps = 1/170 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+HI LE + LHPR+FG L + + KL +VEGTC+G++GFV+A+T I+++G GLI+
Sbjct: 1 MFFHIVLERNMQLHPRHFGRHLRDNLVAKLVKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G GFV +PVKY+ +VFRPFKGE+L+AVVT VNK+G FAE GP+ F+S+H IP DM+F
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
P Y + G V IQ+D E+RLKI+GTRVDA+ IF IGT+ DD+LG+
Sbjct: 121 SGDMP-NYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGV 169
>gi|326497319|dbj|BAK02244.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326505504|dbj|BAJ95423.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 177
Score = 206 bits (523), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 96/170 (56%), Positives = 129/170 (75%), Gaps = 1/170 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+HI LE + LHPR+FGP L + + KL +VEGTC+G++GFV+A+T ++ IG GLI+
Sbjct: 1 MFFHIVLERNMQLHPRHFGPHLRDKLVAKLMKDVEGTCSGRHGFVVAITGVEDIGKGLIR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G GFV +PVKY+ +VFRPFKGE+L+AVVT VNK+G FAE GP+ F+S+H IP DM+F
Sbjct: 61 EGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
P Y + G V IQ++ E+RLKI+GTRVDA+ IF IGT+ DD+LG+
Sbjct: 121 SGDVP-NYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGV 169
>gi|115463767|ref|NP_001055483.1| Os05g0400700 [Oryza sativa Japonica Group]
gi|50878367|gb|AAT85142.1| putative RNA polymerase II subunit 5 [Oryza sativa Japonica Group]
gi|113579034|dbj|BAF17397.1| Os05g0400700 [Oryza sativa Japonica Group]
gi|125552268|gb|EAY97977.1| hypothetical protein OsI_19896 [Oryza sativa Indica Group]
gi|215704281|dbj|BAG93121.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218196761|gb|EEC79188.1| hypothetical protein OsI_19893 [Oryza sativa Indica Group]
gi|222631528|gb|EEE63660.1| hypothetical protein OsJ_18478 [Oryza sativa Japonica Group]
Length = 177
Score = 206 bits (523), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 95/170 (55%), Positives = 129/170 (75%), Gaps = 1/170 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+HI LE + LHPR+FGP L + + KL +VEGTC+G++GFV+A+T ++ +G GLI+
Sbjct: 1 MFFHIVLERNMQLHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDVGKGLIR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G+V +PVKY+ +VFRPFKGE+L+AVVT VNK+G FAE GP+ F+S+H IP DM+F
Sbjct: 61 EGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
P Y + G V IQ+D E+RLKI+GTRVDA+ IF IGT+ DD+LG+
Sbjct: 121 SGDVP-NYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGV 169
>gi|326496519|dbj|BAJ94721.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 236
Score = 205 bits (522), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 96/170 (56%), Positives = 129/170 (75%), Gaps = 1/170 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+HI LE + LHPR+FGP L + + KL +VEGTC+G++GFV+A+T ++ IG GLI+
Sbjct: 60 MFFHIVLERNMQLHPRHFGPHLRDKLVAKLMKDVEGTCSGRHGFVVAITGVEDIGKGLIR 119
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G GFV +PVKY+ +VFRPFKGE+L+AVVT VNK+G FAE GP+ F+S+H IP DM+F
Sbjct: 120 EGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 179
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
P Y + G V IQ++ E+RLKI+GTRVDA+ IF IGT+ DD+LG+
Sbjct: 180 SGDVP-NYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGV 228
>gi|297796859|ref|XP_002866314.1| DNA-directed RNA polymerase II [Arabidopsis lyrata subsp. lyrata]
gi|297312149|gb|EFH42573.1| DNA-directed RNA polymerase II [Arabidopsis lyrata subsp. lyrata]
Length = 176
Score = 205 bits (521), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 97/170 (57%), Positives = 128/170 (75%), Gaps = 1/170 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+HI LE + LHPR+FG L E + KL +VEGTC+G++GFV+A+T I+SIG GLI+
Sbjct: 1 MFFHIVLERNMQLHPRFFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIESIGKGLIR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G GFV +PVKY+ +VFRPFKGE+L+AVVT VNK+G FAE GP+ F+S H IP DM+F
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
P Y + G V IQ++ E+RLKI+GTRVDA+ IF +GT+ DD+LG+
Sbjct: 121 AGDMP-NYTTSDGSVKIQKECEVRLKIIGTRVDATEIFCVGTIKDDFLGV 169
>gi|226500588|ref|NP_001149597.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
gi|242056199|ref|XP_002457245.1| hypothetical protein SORBIDRAFT_03g003990 [Sorghum bicolor]
gi|242090461|ref|XP_002441063.1| hypothetical protein SORBIDRAFT_09g019690 [Sorghum bicolor]
gi|194708012|gb|ACF88090.1| unknown [Zea mays]
gi|195628342|gb|ACG36001.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
gi|241929220|gb|EES02365.1| hypothetical protein SORBIDRAFT_03g003990 [Sorghum bicolor]
gi|241946348|gb|EES19493.1| hypothetical protein SORBIDRAFT_09g019690 [Sorghum bicolor]
gi|413945277|gb|AFW77926.1| DNA-directed RNA polymerase II polypeptide [Zea mays]
Length = 177
Score = 204 bits (519), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 95/170 (55%), Positives = 129/170 (75%), Gaps = 1/170 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+HI LE + LHPR+FGP L + + KL +VEGTC+G++GFV+A+T ++ IG GLI+
Sbjct: 1 MFFHIVLERNMQLHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDIGKGLIR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G+V +PVKY+ +VFRPFKGE+L+AVVT VNK+G FAE GP+ F+S+H IP DM+F
Sbjct: 61 EGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
P Y + G V IQ++ E+RLKI+GTRVDA+ IF IGT+ DD+LG+
Sbjct: 121 SGDVP-NYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGV 169
>gi|328852061|gb|EGG01210.1| hypothetical protein MELLADRAFT_50187 [Melampsora larici-populina
98AG31]
Length = 172
Score = 202 bits (513), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 93/169 (55%), Positives = 123/169 (72%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L H I LHP +FGP+ ++ KL +VEGTCTG++G++IAV +I SI AG IQ
Sbjct: 1 MFFIKELSHTINLHPSFFGPRTQSFLEDKLNRDVEGTCTGRFGYIIAVLSIRSISAGTIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + +KY AIV +PFKGEV+D +V QVNK+G F E+GPL F+S H IP+D++F
Sbjct: 61 PGTGMAEFVIKYSAIVLKPFKGEVVDGIVGQVNKMGFFVEVGPLQAFVSSHLIPSDLRFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PN+NP C+ S + I++ IRLKIVGTRVDA+ IFAIGT+ +DYLG
Sbjct: 121 PNANPPCFSSDEDQATIEKGTRIRLKIVGTRVDATEIFAIGTIKEDYLG 169
>gi|281204945|gb|EFA79139.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
Length = 1025
Score = 202 bits (513), Expect = 6e-50, Method: Composition-based stats.
Identities = 90/166 (54%), Positives = 124/166 (74%)
Query: 5 ISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQG 64
++LE ++ +HP++ GP LY ++L+SEVEGTC+G+YGF+I +T++D + G + G
Sbjct: 750 LTLERDLHIHPKHCGPNLYAIASEQLHSEVEGTCSGRYGFIITITSVDFVSRGKVLESTG 809
Query: 65 FVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSN 124
+VV PVKYRAI+F+PFKGEVLDAVVT+V +G FAE GPL+ F+S H IPTDMQF S
Sbjct: 810 YVVLPVKYRAIIFKPFKGEVLDAVVTKVTNLGFFAEAGPLTIFVSTHLIPTDMQFDAQSA 869
Query: 125 PVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
C+ S G I +D+E+RL+I GTRVDA+ IFAIG++ +DYLG
Sbjct: 870 NPCFISDDGSSKISKDNEVRLQIKGTRVDATEIFAIGSIREDYLGF 915
>gi|66811466|ref|XP_639913.1| DNA-directed RNA polymerase II subunit 7 [Dictyostelium discoideum
AX4]
gi|74854071|sp|Q54P04.1|RPB7_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb7;
Short=RNA polymerase II subunit B7
gi|60466865|gb|EAL64909.1| DNA-directed RNA polymerase II subunit 7 [Dictyostelium discoideum
AX4]
Length = 172
Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 91/170 (53%), Positives = 127/170 (74%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+H++LE ++ +HP++ GP L+ Q+LYSEVEGTCTG+YGF+I +T++D + G +
Sbjct: 1 MFFHLTLEKDLHMHPKHCGPNLFTIATQQLYSEVEGTCTGRYGFIITITSVDFLSKGKVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G+VV+ VKY+AI+F+PFKGEVLDA+VT+V +G FAE GPLS F+S IP+DM F
Sbjct: 61 ESSGYVVFNVKYKAIIFKPFKGEVLDAIVTKVTNLGFFAEAGPLSIFVSTQLIPSDMIFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
S C+ S G I +DDE+RL+I GTRVDA+ IFAIG++ +DYLG+
Sbjct: 121 AQSAVPCFVSEDGSSKISKDDEVRLQIKGTRVDATEIFAIGSIREDYLGV 170
>gi|331246804|ref|XP_003336033.1| DNA-directed RNA polymerase II subunit rpb7 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|309315023|gb|EFP91614.1| DNA-directed RNA polymerase II subunit rpb7 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 172
Score = 198 bits (503), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 92/169 (54%), Positives = 122/169 (72%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L H I LHP +FGP+ + ++ KL +VEGTCTG++G++IAV SI AG IQ
Sbjct: 1 MFFIKELSHTINLHPSFFGPRTSKFLEDKLNRDVEGTCTGRFGYIIAVLRTLSISAGTIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + +KY AIV +PFKGEV+D +V QVNK+G F E+GPL F+S H IP+D++F
Sbjct: 61 PGTGMAEFVMKYSAIVLKPFKGEVVDGIVGQVNKMGFFVEVGPLQAFVSSHLIPSDLKFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PN+NP C+ S + I++ IRLKIVGTRVDA+ IFAIGT+ +DYLG
Sbjct: 121 PNANPPCFSSDEDQATIEKGTRIRLKIVGTRVDATEIFAIGTIKEDYLG 169
>gi|403418884|emb|CCM05584.1| predicted protein [Fibroporia radiculosa]
Length = 170
Score = 194 bits (494), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 92/170 (54%), Positives = 128/170 (75%), Gaps = 2/170 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L H ILLHP YFGP++ + ++ KLYS+VEGTC+G++G++IAV +I IG G++
Sbjct: 1 MFFIKELSHTILLHPSYFGPRMLQFLESKLYSDVEGTCSGQFGYIIAVVSILDIGKGMVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + +YRAIVF+PFKGEV+D VV V K+G FA++GPL+ F+SH I DM+F
Sbjct: 61 SGSGQAEFITRYRAIVFKPFKGEVVDGVVNNVTKMGFFADVGPLTVFVSHQLIHPDMKFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP + S E +I+++ +IRLKIVGTRVDA+ IFAIGT+ +D+LG+
Sbjct: 121 PNSNPPSFAS--EEQIIEKNTKIRLKIVGTRVDATEIFAIGTIKEDHLGV 168
>gi|388582123|gb|EIM22429.1| hypothetical protein WALSEDRAFT_60067 [Wallemia sebi CBS 633.66]
Length = 171
Score = 192 bits (487), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 91/170 (53%), Positives = 123/170 (72%), Gaps = 2/170 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
F L H + LHP YFGPQ + + KLY++VEGTCTG+YG++IAV +I G+G +
Sbjct: 2 FFVKHDLTHRLHLHPSYFGPQTMDFINNKLYADVEGTCTGRYGYIIAVLSISDPGSGTVL 61
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + VKY AIV++PFKGEV+D V VNK+G FA++GPL F+S H IP D++F
Sbjct: 62 PGVGTAEFVVKYTAIVYKPFKGEVVDGQVASVNKMGFFADVGPLQVFVSSHLIPQDIKFD 121
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
P+SNP C+ S + VI++ ++RLKIVGTRVDA+ IFAIGT+ +DYLG+
Sbjct: 122 PSSNPACFSS--EDQVIEKGSKVRLKIVGTRVDATEIFAIGTIKEDYLGV 169
>gi|392564925|gb|EIW58102.1| hypothetical protein TRAVEDRAFT_167523 [Trametes versicolor
FP-101664 SS1]
Length = 170
Score = 192 bits (487), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 90/170 (52%), Positives = 126/170 (74%), Gaps = 2/170 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L H ILLHP YFGP++ ++ KLYS+VEGTC+G++G++IAV +I IG G++
Sbjct: 1 MFFIKELSHTILLHPSYFGPRMLNFLESKLYSDVEGTCSGEFGYIIAVVSILDIGKGMVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + +YRAIVF+PFKG+V+D VV V K+G FA++GPL+ F+SH I DM+F
Sbjct: 61 AGSGQAEFVTRYRAIVFKPFKGQVVDGVVNNVTKMGFFADVGPLTVFVSHQLIHPDMKFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP + S E +I+++ +RLKIVGTRVDA+ IFAIGT+ +D+LG+
Sbjct: 121 PNSNPPSFAS--EEQIIEKNTRVRLKIVGTRVDATEIFAIGTIKEDHLGV 168
>gi|393248136|gb|EJD55643.1| hypothetical protein AURDEDRAFT_78882 [Auricularia delicata
TFB-10046 SS5]
Length = 170
Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/170 (53%), Positives = 128/170 (75%), Gaps = 2/170 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L H ILLHP YFGP++ E +++KLY++VEGTC+G++G++IAV + IG G++
Sbjct: 1 MFFIKELTHTILLHPSYFGPRMQEFLEKKLYADVEGTCSGQFGYIIAVIDLVDIGRGIVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + +YRAIVF+PFKGEV+D VV+ V K+G FA++GPLS F+S I DM+F
Sbjct: 61 PGSGQAEFVTRYRAIVFKPFKGEVVDGVVSSVLKMGFFADVGPLSVFVSAQLIHPDMRFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP + S E +I+++ +RLKIVGTRVDA+ IFAIGT+ +D+LG+
Sbjct: 121 PNSNPPSFAS--EEQIIEKNTHVRLKIVGTRVDATEIFAIGTIKEDHLGV 168
>gi|328871329|gb|EGG19700.1| RFT1 family protein [Dictyostelium fasciculatum]
Length = 662
Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/167 (52%), Positives = 124/167 (74%), Gaps = 1/167 (0%)
Query: 4 HISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQ 63
++LE ++ +HP++ GP L+ Q+L+SEVEGTC+G+YGF+I +T++D + G +
Sbjct: 495 RLTLEKDLHIHPKHCGPNLFTIATQQLHSEVEGTCSGRYGFIITITSVDFVSKGKVLESS 554
Query: 64 GFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNS 123
G+VV+ VKY+AI+F+PFKGEV+DAVVT+V +G FAE GPL+ F+S H IP DMQF S
Sbjct: 555 GYVVFQVKYKAIIFKPFKGEVMDAVVTKVTNLGFFAEAGPLTIFVSTHLIPPDMQFDAQS 614
Query: 124 NPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
C+ S G I +DDE+RL+I GTRVDA+ IFAIG++ +DYLG+
Sbjct: 615 ANPCFVSEDGS-KISKDDEVRLQIKGTRVDATEIFAIGSIREDYLGV 660
>gi|56757344|gb|AAW26843.1| unknown [Schistosoma japonicum]
Length = 157
Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/119 (71%), Positives = 105/119 (88%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHI LEHEILLHP+YFGP L ETVK KL+S+VEGTC+GKYGF+IAVT I+ IGAG+IQ
Sbjct: 1 MFYHIKLEHEILLHPKYFGPNLTETVKTKLFSDVEGTCSGKYGFIIAVTNIEHIGAGIIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQF 119
P +GFV Y + YRAIV+RPFKGEV+DA+VTQV KVG+FAE GPL+ FIS +S+P++++F
Sbjct: 61 PNRGFVQYRIVYRAIVYRPFKGEVVDAIVTQVTKVGVFAEAGPLTIFISKYSVPSNIKF 119
>gi|302687740|ref|XP_003033550.1| hypothetical protein SCHCODRAFT_234509 [Schizophyllum commune H4-8]
gi|300107244|gb|EFI98647.1| hypothetical protein SCHCODRAFT_234509 [Schizophyllum commune H4-8]
Length = 167
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 88/170 (51%), Positives = 126/170 (74%), Gaps = 5/170 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L H ILLHP +FGPQ+ ++ KLY++VEGTC+G++G++IAV +I IG G++
Sbjct: 1 MFFIKELTHSILLHPSFFGPQMTSFLEAKLYADVEGTCSGRFGYIIAVVSILDIGKGMVM 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + +YRAIVF+PFKGEV+D V VN +G FA++GPL+ F+SH I DM+F
Sbjct: 61 SGSGQAEFITRYRAIVFKPFKGEVVDGV---VNNMGFFADVGPLTVFVSHQLIHPDMKFD 117
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP + S + +I+++ ++RLKIVGTRVDA+ IFAIGT+ +D+LG+
Sbjct: 118 PNSNPPSFAS--EDAIIEKNTKVRLKIVGTRVDATEIFAIGTIKEDHLGV 165
>gi|307105977|gb|EFN54224.1| hypothetical protein CHLNCDRAFT_36106 [Chlorella variabilis]
Length = 174
Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 87/170 (51%), Positives = 120/170 (70%), Gaps = 1/170 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFY I L E+ +HPR+FGP+L E ++++L EVEGTC G+YGF+++V + G GLI+
Sbjct: 1 MFYLIELYKELEVHPRFFGPKLREEIERRLRQEVEGTCNGRYGFILSVMGVLDTGKGLIR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G V+ +KY+ I +PFKG+V+D VVT VNK+G FAE GPL F+S+H IP +F
Sbjct: 61 EGSGSAVFNLKYKCICMKPFKGQVMDVVVTSVNKMGFFAEAGPLQVFVSNHLIPEGFEFN 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
P CY++ GE I E+RL+IVGTRVDAS IFA+G++ +DYLG+
Sbjct: 121 TAHEP-CYQTADGEQKIVPGSEVRLRIVGTRVDASDIFAVGSIKEDYLGV 169
>gi|409045255|gb|EKM54736.1| hypothetical protein PHACADRAFT_175251 [Phanerochaete carnosa
HHB-10118-sp]
Length = 170
Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 93/170 (54%), Positives = 131/170 (77%), Gaps = 2/170 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L H ILLHP YFGP++ + ++ KLY++VEGTC+G++G++IAV TI +IG G++
Sbjct: 1 MFFIKELTHTILLHPSYFGPRMLQYLESKLYADVEGTCSGQFGYIIAVVTILNIGEGMVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + +YRAIVF+PFKGEV+D VV VNK+G FA++GPL+ F+SH I DM+F
Sbjct: 61 PGSGQAEFITRYRAIVFKPFKGEVVDGVVNNVNKMGFFADVGPLTVFVSHQLIHPDMKFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP + S E +I+++ ++RLKIVGTRVDA+ IFAIGT+ +D+LG+
Sbjct: 121 PNSNPPSFAS--DEQIIEKNTKVRLKIVGTRVDATEIFAIGTIKEDHLGV 168
>gi|390596943|gb|EIN06344.1| hypothetical protein PUNSTDRAFT_73661 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 186
Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 123/174 (70%), Gaps = 5/174 (2%)
Query: 2 FYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQP 61
F LEH ILLHP YFGP++ + ++ KL+++VEGTC+GKYG++I+V T+ IG G I P
Sbjct: 11 FTQKELEHTILLHPSYFGPRMLQYLESKLHADVEGTCSGKYGYIISVVTLMDIGRGTILP 70
Query: 62 GQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCP 121
G G + +YRAIVF+PFKGEV+D +V VNK+G F E+GP++CF+S I DM+F P
Sbjct: 71 GSGQAEFVARYRAIVFKPFKGEVVDGIVNNVNKMGFFCEVGPVTCFVSQQLIHPDMKFDP 130
Query: 122 NSNPVCYKSVHGE-----VVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
+SN + S VI++ +RLKIVGTRVDA+ IFAIGT+ +D+LG+
Sbjct: 131 SSNTPSFASEDQACTTLPAVIEKGTHVRLKIVGTRVDATEIFAIGTIKEDHLGV 184
>gi|393221726|gb|EJD07210.1| hypothetical protein FOMMEDRAFT_137613 [Fomitiporia mediterranea
MF3/22]
Length = 170
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 92/170 (54%), Positives = 130/170 (76%), Gaps = 2/170 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L H ILLHP YFGP++ + ++ KLY++VEGTC+G++G++IAV ++ IG G++
Sbjct: 1 MFFIKELTHTILLHPSYFGPRMLQFLETKLYADVEGTCSGQFGYIIAVVSVLDIGKGMVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + +YRAIVF+PFKGEV+D VV VNK+G FAE+GPL+ F+SH I DM+F
Sbjct: 61 PGSGQAEFVTRYRAIVFKPFKGEVVDGVVNNVNKMGFFAEVGPLTVFVSHQLIHPDMKFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP + S E +I+++ ++RLKIVGTRVDA+ IFAIGT+ +D+LG+
Sbjct: 121 PNSNPPSFAS--DEQIIEKNTKVRLKIVGTRVDATEIFAIGTIKEDHLGV 168
>gi|402223848|gb|EJU03912.1| hypothetical protein DACRYDRAFT_49099, partial [Dacryopinax sp.
DJM-731 SS1]
Length = 166
Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/164 (52%), Positives = 121/164 (73%), Gaps = 2/164 (1%)
Query: 7 LEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFV 66
L H ILLHP YFG ++++ ++ KL+++VEGTC+G+YG++IAV + +G GL+ G G
Sbjct: 3 LHHTILLHPSYFGARMHQHIESKLHADVEGTCSGEYGYIIAVLDVIDVGVGLVSVGAGHA 62
Query: 67 VYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPV 126
+ YRAIVF+PFKGEVLD+VVT VNK+G FAE+GPL F+S H I DM+F +
Sbjct: 63 EFTTTYRAIVFKPFKGEVLDSVVTSVNKMGFFAEVGPLQVFVSAHLIHPDMRFDSAAANP 122
Query: 127 CYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
C+ S + VI++D +RLK+VGTRVDA+ IFAIGT+ +D+LG+
Sbjct: 123 CFAS--SDQVIEKDTHVRLKLVGTRVDATEIFAIGTIKEDHLGV 164
>gi|321258118|ref|XP_003193819.1| hypothetical protein CGB_D7770C [Cryptococcus gattii WM276]
gi|317460289|gb|ADV22032.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 172
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 121/169 (71%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L H ILLHP YFG QL + ++QKLY +VEGTC+GK+G++I+V TI IG G I
Sbjct: 1 MFFLRELTHTILLHPSYFGAQLEDYLRQKLYEDVEGTCSGKHGYIISVITITDIGEGKII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P G + +Y AIV +PFKGEV+DA V VNK+G FA +GPL F+S H +DM+F
Sbjct: 61 PSTGQAKFKTRYTAIVMKPFKGEVVDAKVANVNKMGFFAMVGPLQVFVSCHLTHSDMKFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
P+ +P CY+S + +IQ+D ++R++IVG RV+A+ +FAIGT+ DYLG
Sbjct: 121 PSVSPPCYRS--NDEIIQKDTKVRIQIVGCRVEANDMFAIGTIKKDYLG 167
>gi|58266678|ref|XP_570495.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57226728|gb|AAW43188.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 172
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 121/169 (71%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L H ILLHP YFG QL + ++QKLY +VEGTC+GK+G++I+V TI IG G I
Sbjct: 1 MFFLRELTHTILLHPSYFGAQLEDYLRQKLYEDVEGTCSGKHGYIISVITITDIGEGKII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P G + +Y AIV +PFKGEV+DA V VNK+G FA +GPL F+S H +DM+F
Sbjct: 61 PSTGQAKFKTRYTAIVMKPFKGEVVDAKVVNVNKMGFFAMVGPLQVFVSCHLTHSDMKFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
P+ +P CY+S + +IQ+D ++R++IVG RV+A+ +FAIGT+ DYLG
Sbjct: 121 PSVSPPCYRS--NDEIIQKDTKVRIQIVGCRVEANDMFAIGTIKKDYLG 167
>gi|256072766|ref|XP_002572705.1| DNA-directed rna polymerase II 19 kD polypeptide rpb7 [Schistosoma
mansoni]
gi|353231053|emb|CCD77471.1| putative dna-directed rna polymerase II 19 kD polypeptide rpb7
[Schistosoma mansoni]
Length = 194
Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 93/156 (59%), Positives = 122/156 (78%), Gaps = 3/156 (1%)
Query: 5 ISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQG 64
I LEHEILLHP+YFGP L ETVK KL+S+VEGTC+GKYGF+IAVT I+ IGAG+IQP +G
Sbjct: 28 IKLEHEILLHPKYFGPNLTETVKTKLFSDVEGTCSGKYGFIIAVTNIEHIGAGIIQPNRG 87
Query: 65 FVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQF---CP 121
FV Y + YRAIV+RPFKGEV+DA+VTQV KVG+FAE GPL+ FIS +S+P++++F
Sbjct: 88 FVQYRIVYRAIVYRPFKGEVVDAIVTQVTKVGVFAEAGPLTIFISKYSVPSNIKFEGAET 147
Query: 122 NSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGI 157
++ + + +Q +D IR++I+G RVDAS I
Sbjct: 148 TTDGLNDEDEEETQTVQIEDRIRIRIIGLRVDASDI 183
>gi|449548439|gb|EMD39406.1| hypothetical protein CERSUDRAFT_113038 [Ceriporiopsis subvermispora
B]
Length = 170
Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 92/170 (54%), Positives = 129/170 (75%), Gaps = 2/170 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L H ILLHP YFGP++ + ++ KLYS+VEGTC+G++G++IAV +I IG G++
Sbjct: 1 MFFIKELSHTILLHPSYFGPRMLQFLESKLYSDVEGTCSGQFGYIIAVVSILDIGKGMVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + +YRAIVF+PFKGEV+D VV VNK+G FA++GPL+ F+SH I D++F
Sbjct: 61 PGSGQAEFVTRYRAIVFKPFKGEVVDGVVNNVNKMGFFADVGPLTVFVSHQLIHPDLKFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP + S + +I+++ IRLKIVGTRVDA+ IFAIGT+ +D+LG+
Sbjct: 121 PNSNPPSFAS--DDQIIEKNTRIRLKIVGTRVDATEIFAIGTIKEDHLGV 168
>gi|162312460|ref|XP_001713072.1| DNA-directed RNA polymerase complex II subunit Rpb7
[Schizosaccharomyces pombe 972h-]
gi|3334317|sp|O14459.1|RPB7_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit rpb7;
Short=RNA polymerase II subunit B7
gi|256599721|pdb|3H0G|G Chain G, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599733|pdb|3H0G|S Chain S, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|2529241|dbj|BAA22802.1| RNA polymerase II subunit Rpb7 [Schizosaccharomyces pombe]
gi|2529245|dbj|BAA22804.1| RNA polymerase II subunit Rpb7 [Schizosaccharomyces pombe]
gi|2708528|gb|AAB92516.1| Rpb7 [Schizosaccharomyces pombe]
gi|4091821|gb|AAC99317.1| RNA polymerase II subunit Rpb7 [Schizosaccharomyces pombe]
gi|159883968|emb|CAA20136.2| DNA-directed RNA polymerase complex II subunit Rpb7
[Schizosaccharomyces pombe]
Length = 172
Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 90/172 (52%), Positives = 123/172 (71%), Gaps = 6/172 (3%)
Query: 2 FYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAV---TTIDSIGAGL 58
F+ L I LHP YFGP++ + +K KL ++VEGTC+G+YG++I V TID I G
Sbjct: 3 FFLKELSLTISLHPSYFGPRMQDYLKAKLLADVEGTCSGQYGYIICVLDSNTID-IDKGR 61
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
+ PGQGF + VKYRA+++RPF+GEV+DA+VT VNK+G FA IGPL+ F+S H +P DM+
Sbjct: 62 VVPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMK 121
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
F P +NP Y + VI++ +RLKIVGTR DA+ IFAI T+ +DYLG+
Sbjct: 122 FDPTANPPNYSG--EDQVIEKGSNVRLKIVGTRTDATEIFAIATMKEDYLGV 171
>gi|213403826|ref|XP_002172685.1| DNA-directed RNA polymerase II subunit RPB7 [Schizosaccharomyces
japonicus yFS275]
gi|212000732|gb|EEB06392.1| DNA-directed RNA polymerase II subunit RPB7 [Schizosaccharomyces
japonicus yFS275]
Length = 172
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 92/172 (53%), Positives = 122/172 (70%), Gaps = 6/172 (3%)
Query: 2 FYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAV---TTIDSIGAGL 58
F+ L I LHP YFGP + + +K KL ++VEGTC+G+YG++I V TID I G
Sbjct: 3 FFLKELSLTISLHPSYFGPHMRDYLKAKLLADVEGTCSGQYGYIICVLDSNTID-IDKGK 61
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
+ PGQGF + VKYRAI++RPF+GEV+DAVVT VNK+G FA++GPLS F+S H +P DM
Sbjct: 62 VIPGQGFAEFEVKYRAILWRPFRGEVVDAVVTTVNKMGFFADVGPLSVFVSSHLVPPDMT 121
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
F P +NP Y + VI++ +RLKIVGTR DA+ IFAI T+ +DYLG+
Sbjct: 122 FDPAANPPNYSG--EDQVIEKGSNVRLKIVGTRTDATEIFAIATMKEDYLGV 171
>gi|406694604|gb|EKC97928.1| hypothetical protein A1Q2_07725 [Trichosporon asahii var. asahii
CBS 8904]
Length = 171
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 116/169 (68%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L H ILLHP YFG QL + +KQKLY +VEGTC+GK+G++I+V + IG G I
Sbjct: 1 MFFIRELTHTILLHPSYFGAQLEDYLKQKLYEDVEGTCSGKHGYIISVVNVTDIGEGKIM 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P G + Y AIV +PFKGEV+D V+ VNK+G FA +GPL F+S H + DM+F
Sbjct: 61 PSTGQARFKCSYTAIVMKPFKGEVVDGKVSNVNKMGFFAHVGPLQVFVSSHLVHADMKFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PN++P CY+S + IQ +R++IVG R++A+ IFAIGT+ DYLG
Sbjct: 121 PNASPPCYRS--ADETIQAGSRVRMEIVGCRIEANDIFAIGTIKKDYLG 167
>gi|126273978|ref|XP_001387367.1| RNA polymerase II subunit [Scheffersomyces stipitis CBS 6054]
gi|126213237|gb|EAZ63344.1| RNA polymerase II subunit [Scheffersomyces stipitis CBS 6054]
Length = 173
Score = 182 bits (462), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 89/172 (51%), Positives = 124/172 (72%), Gaps = 6/172 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAV---TTIDSIGAG 57
MF+ L + LHP YFGPQ+ + ++ KL S+VEGTCTG++G+++ V ID +G G
Sbjct: 1 MFFLKDLSLNLTLHPSYFGPQMDQYLRDKLLSDVEGTCTGQFGYIVCVLDCMNID-VGKG 59
Query: 58 LIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDM 117
I PG G + VKYRA+V++PFKGEV+DAVVT VNK+G FA++GPLS F+S H IP+DM
Sbjct: 60 RIIPGSGMAEFEVKYRAVVWKPFKGEVVDAVVTTVNKMGFFADVGPLSVFVSTHLIPSDM 119
Query: 118 QFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
+F P++NP Y V + I++ +RLKIVGTR D + I+AIG++ +DYLG
Sbjct: 120 KFNPSANPPAY--VSPDENIEKGSRVRLKIVGTRTDVNEIYAIGSIKEDYLG 169
>gi|190346607|gb|EDK38733.2| hypothetical protein PGUG_02831 [Meyerozyma guilliermondii ATCC
6260]
Length = 173
Score = 182 bits (461), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 89/172 (51%), Positives = 124/172 (72%), Gaps = 6/172 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAV---TTIDSIGAG 57
MF+ L + LHP YFGPQ+ ++ KL S+VEGTCTG++G+++ V ID +G G
Sbjct: 1 MFFLKDLSLNLTLHPSYFGPQMDSYLRSKLLSDVEGTCTGQFGYIVCVLDCMNID-VGKG 59
Query: 58 LIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDM 117
I PG G + VKYRA+V++PFKGEV+DAVVT VNK+G FA++GPLS F+S H IP+DM
Sbjct: 60 KIIPGSGMAEFEVKYRAVVWKPFKGEVVDAVVTTVNKMGFFADVGPLSVFVSTHLIPSDM 119
Query: 118 QFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
+F P++NP Y V + I++ +RLKIVGTR+D + I+AIG++ +DYLG
Sbjct: 120 KFNPSANPPAY--VSPDENIEKGSRVRLKIVGTRMDVNEIYAIGSIKEDYLG 169
>gi|344234578|gb|EGV66446.1| hypothetical protein CANTEDRAFT_112179 [Candida tenuis ATCC 10573]
Length = 173
Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 88/172 (51%), Positives = 124/172 (72%), Gaps = 6/172 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAV---TTIDSIGAG 57
MF+ L + LHP YFGPQ+ + ++ KL S+VEGTCTG++G+++ V ID +G G
Sbjct: 1 MFFLKDLSLNLTLHPSYFGPQMDQYLRDKLLSDVEGTCTGQFGYIVCVLDCMNID-VGKG 59
Query: 58 LIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDM 117
I P G + VKYRA+V++PFKGEV+DA+VT VNK+G FA++GPLS F+S H IP+DM
Sbjct: 60 RIIPSSGMAEFEVKYRAVVWKPFKGEVVDAIVTTVNKMGFFADVGPLSVFVSTHLIPSDM 119
Query: 118 QFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
QF P++NP Y V + I++ ++RLKIVGTR D + I+AIG++ +DYLG
Sbjct: 120 QFNPSANPPAY--VSQDENIEKGSKVRLKIVGTRTDVNEIYAIGSIKEDYLG 169
>gi|353236768|emb|CCA68756.1| probable DNA-directed RNA polymerase II chain Rpb7 [Piriformospora
indica DSM 11827]
Length = 170
Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 85/170 (50%), Positives = 121/170 (71%), Gaps = 2/170 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L H IL+HP YFGP++ E ++ KL+S+V+GTCTG+YGF+IAV I +G G++
Sbjct: 1 MFFIKELTHTILMHPSYFGPRMLEIIEAKLHSDVQGTCTGQYGFIIAVLEIIDVGPGIVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + +Y+AIVF+PFKGEVLD VVT V + G F E+GPL CF+S + DM+F
Sbjct: 61 PGNGQAEFKTRYKAIVFKPFKGEVLDGVVTNVLRAGFFVEVGPLRCFVSQQLVHPDMRFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
N+ + S + VI++D ++RLK+VGTRVD + IFAI T+ +D+LG+
Sbjct: 121 ANAAVPSFSS--QDQVIEKDTKVRLKVVGTRVDQTEIFAIATIKEDHLGV 168
>gi|448117713|ref|XP_004203323.1| Piso0_000929 [Millerozyma farinosa CBS 7064]
gi|448120153|ref|XP_004203906.1| Piso0_000929 [Millerozyma farinosa CBS 7064]
gi|359384191|emb|CCE78895.1| Piso0_000929 [Millerozyma farinosa CBS 7064]
gi|359384774|emb|CCE78309.1| Piso0_000929 [Millerozyma farinosa CBS 7064]
Length = 173
Score = 181 bits (459), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 88/172 (51%), Positives = 124/172 (72%), Gaps = 6/172 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAV---TTIDSIGAG 57
MF+ L + LHP YFGPQ+ + ++ KL S+VEGTCTG++G+++ V ID +G G
Sbjct: 1 MFFLKDLSLNLTLHPSYFGPQMDQYLRDKLLSDVEGTCTGQFGYIVCVLDCMNID-VGKG 59
Query: 58 LIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDM 117
I PG G + VKYRA+V++PFKGEV+D VVT VNK+G FA++GPLS F+S H IP+DM
Sbjct: 60 TIIPGTGMAEFEVKYRAVVWKPFKGEVVDGVVTTVNKMGFFADVGPLSVFVSTHLIPSDM 119
Query: 118 QFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
+F P++NP Y S + I++ ++RLKIVGTR D + I+AIG++ +DYLG
Sbjct: 120 KFNPSANPPAYMS--SDENIEKGSKVRLKIVGTRTDVNEIYAIGSIKEDYLG 169
>gi|50426557|ref|XP_461875.1| DEHA2G07546p [Debaryomyces hansenii CBS767]
gi|49657545|emb|CAG90338.1| DEHA2G07546p [Debaryomyces hansenii CBS767]
Length = 173
Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/172 (51%), Positives = 124/172 (72%), Gaps = 6/172 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAV---TTIDSIGAG 57
MF+ L + LHP YFGPQ+ + ++ KL S+VEGTCTG++G+++ V ID +G G
Sbjct: 1 MFFLKDLSLNLTLHPSYFGPQMDQYLRDKLLSDVEGTCTGQFGYIVCVLDCMNID-VGKG 59
Query: 58 LIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDM 117
+ PG G + VKYRA+V++PFKGEV+DAVVT VNK+G FA++GPLS F+S H IP+DM
Sbjct: 60 RVIPGSGVAEFEVKYRAVVWKPFKGEVVDAVVTTVNKMGFFADVGPLSVFVSTHLIPSDM 119
Query: 118 QFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
+F P++NP Y V + I++ +RLKIVGTR D + I+AIG++ +DYLG
Sbjct: 120 KFNPSANPPAY--VSPDENIEKGSRVRLKIVGTRTDVNEIYAIGSIKEDYLG 169
>gi|170106467|ref|XP_001884445.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164640791|gb|EDR05055.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 170
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/170 (54%), Positives = 127/170 (74%), Gaps = 2/170 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L H ILLHP YFGP++ ++ KLYS+VEGTC+G++G++IAV +I IG G++
Sbjct: 1 MFFIKELTHTILLHPSYFGPRMLNFLESKLYSDVEGTCSGQFGYIIAVVSILDIGKGMVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + +YRAIVF+PFKGEV+D VV VNK+G FA++GPL+ F+SH I DM+F
Sbjct: 61 SGSGQAEFITRYRAIVFKPFKGEVVDGVVNNVNKMGFFADVGPLTVFVSHQLIHPDMRFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP + S E +I+++ +RLKIVGTRVDA+ IFAIGT+ +D+LG+
Sbjct: 121 PNSNPPSFAS--DEQIIEKNTRVRLKIVGTRVDATEIFAIGTIKEDHLGV 168
>gi|402585420|gb|EJW79360.1| DNA-directed RNA polymerase II subunit RPB7 [Wuchereria bancrofti]
Length = 107
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/104 (80%), Positives = 98/104 (94%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHI L+HEI LHP+YFGP L ETVK+KL++EVEGTCTGKYGFV+AVTTID+IGAGLIQ
Sbjct: 1 MFYHIPLDHEICLHPKYFGPDLLETVKRKLFNEVEGTCTGKYGFVVAVTTIDNIGAGLIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL 104
PG+GFV+YPVKY+AIVFRPFKG+V+DAVV QVNKVG+F +IGPL
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGQVVDAVVNQVNKVGLFCDIGPL 104
>gi|146418273|ref|XP_001485102.1| hypothetical protein PGUG_02831 [Meyerozyma guilliermondii ATCC
6260]
Length = 173
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 89/172 (51%), Positives = 124/172 (72%), Gaps = 6/172 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAV---TTIDSIGAG 57
MF+ L + LHP YFGPQ+ ++ KL S+VEGTCTG++G+++ V ID +G G
Sbjct: 1 MFFLKDLSLNLTLHPSYFGPQMDLYLRSKLLSDVEGTCTGQFGYIVCVLDCMNID-VGKG 59
Query: 58 LIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDM 117
I PG G + VKYRA+V++PFKGEV+DAVVT VNK+G FA++GPLS F+S H IP+DM
Sbjct: 60 KIIPGSGMAEFEVKYRAVVWKPFKGEVVDAVVTTVNKMGFFADVGPLSVFVSTHLIPSDM 119
Query: 118 QFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
+F P++NP Y V + I++ +RLKIVGTR+D + I+AIG++ +DYLG
Sbjct: 120 KFNPSANPPAY--VSPDENIEKGSRVRLKIVGTRMDVNEIYAIGSIKEDYLG 169
>gi|169846764|ref|XP_001830096.1| DNA-directed RNA polymerase II subunit [Coprinopsis cinerea
okayama7#130]
gi|116508866|gb|EAU91761.1| DNA-directed RNA polymerase II subunit [Coprinopsis cinerea
okayama7#130]
Length = 170
Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/170 (54%), Positives = 128/170 (75%), Gaps = 2/170 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L H ILLHP YFGPQ+ ++ KLY++VEGTC+G++G++IAV +I IG G++
Sbjct: 1 MFFIKELTHTILLHPSYFGPQMLSYLETKLYNDVEGTCSGQFGYIIAVVSILDIGKGMVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + +YRAIVF+PFKGEV+D VV VNK+G FA++GPLS F+SH I DM+F
Sbjct: 61 SGSGQAEFITRYRAIVFKPFKGEVVDGVVNNVNKMGFFADVGPLSVFVSHQLIHPDMKFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP + S + +I+++ ++RLKIVGTRVDA+ IFAIGT+ +D+LG+
Sbjct: 121 PNSNPPSFAS--EDQIIEKNTKVRLKIVGTRVDATEIFAIGTIKEDHLGV 168
>gi|336368539|gb|EGN96882.1| hypothetical protein SERLA73DRAFT_185108 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381330|gb|EGO22482.1| hypothetical protein SERLADRAFT_473371 [Serpula lacrymans var.
lacrymans S7.9]
Length = 170
Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/170 (54%), Positives = 127/170 (74%), Gaps = 2/170 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L H ILLHP YFGP++ + ++ KLYS+VEGTC+G +G++IAV +I IG G++
Sbjct: 1 MFFIKELTHTILLHPSYFGPRMLQFLESKLYSDVEGTCSGAFGYIIAVVSILDIGKGMVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + +YRAIVF+PFKGEV+D VV VNK+G FAE+GPL+ F+SH I DM+F
Sbjct: 61 SGSGQAEFITRYRAIVFKPFKGEVVDGVVNNVNKMGFFAEVGPLTVFVSHQLIHPDMKFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP + S + +I+++ +RLKIVGTRVDA+ IFAIGT+ +D+LG+
Sbjct: 121 PNSNPPSFAS--EDQIIEKNTRVRLKIVGTRVDATEIFAIGTIKEDHLGV 168
>gi|344304448|gb|EGW34680.1| RNA polymerase II subunit [Spathaspora passalidarum NRRL Y-27907]
Length = 173
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/172 (51%), Positives = 123/172 (71%), Gaps = 6/172 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAV---TTIDSIGAG 57
MF+ L + LHP YFGPQ+ + ++ KL S+VEGTCTG++G+++ V ID +G G
Sbjct: 1 MFFLKDLSLNLTLHPSYFGPQMDQYLRDKLLSDVEGTCTGQFGYIVCVLDCMNID-VGKG 59
Query: 58 LIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDM 117
I PG G + VKYRA+V++PFKGEV+D VVT VNK+G FA++GPLS F+S H IP+DM
Sbjct: 60 RIIPGSGMAEFEVKYRAVVWKPFKGEVVDGVVTTVNKMGFFADVGPLSVFVSTHLIPSDM 119
Query: 118 QFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
+F P++NP Y V + I++ +RLKIVGTR D + I+AIG++ +DYLG
Sbjct: 120 KFNPSANPPAY--VSPDENIEKGSRVRLKIVGTRTDVNEIYAIGSIKEDYLG 169
>gi|238879354|gb|EEQ42992.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Candida albicans
WO-1]
Length = 173
Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 126/173 (72%), Gaps = 8/173 (4%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDS----IGA 56
MF+ L + LHP +FGPQ+ + +++KL S+VEGTCTG++G+++ V +DS +G
Sbjct: 1 MFFLKDLSLNLTLHPSFFGPQMDQYLREKLLSDVEGTCTGQFGYIVCV--LDSMNIDVGK 58
Query: 57 GLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
G I P G V + VKYRA+V++PFKGEV+DAVVT VNK+G FA++GPLS F+S H IP+D
Sbjct: 59 GRIIPSTGKVEFEVKYRAVVWKPFKGEVVDAVVTTVNKMGFFADVGPLSVFVSTHLIPSD 118
Query: 117 MQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
M+F P++NP Y V + I++ +RLKIVGTR D + I+AIG++ +DYLG
Sbjct: 119 MKFNPSANPPAY--VSPDENIEKGSRVRLKIVGTRTDVNEIYAIGSIKEDYLG 169
>gi|68475103|ref|XP_718437.1| likely RNA Pol II core complex subunit [Candida albicans SC5314]
gi|68475644|ref|XP_718170.1| likely RNA Pol II core complex subunit [Candida albicans SC5314]
gi|241948197|ref|XP_002416821.1| DNA-directed RNA polymerase II 19 kda polypeptide, putative;
DNA-directed RNA polymerase II core complex subunit,
putative [Candida dubliniensis CD36]
gi|12655858|gb|AAK00627.1| RNA polymerase II subunit 7 [Candida albicans]
gi|46439926|gb|EAK99238.1| likely RNA Pol II core complex subunit [Candida albicans SC5314]
gi|46440202|gb|EAK99511.1| likely RNA Pol II core complex subunit [Candida albicans SC5314]
gi|223640159|emb|CAX44406.1| DNA-directed RNA polymerase II 19 kda polypeptide, putative
[Candida dubliniensis CD36]
Length = 173
Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/173 (50%), Positives = 125/173 (72%), Gaps = 8/173 (4%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDS----IGA 56
MF+ L + LHP +FGPQ+ + +++KL S+VEGTCTG++G+++ V +DS +G
Sbjct: 1 MFFLKDLSLNLTLHPSFFGPQMDQYLREKLLSDVEGTCTGQFGYIVCV--LDSMNIDVGK 58
Query: 57 GLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
G I P G + VKYRA+V++PFKGEV+DAVVT VNK+G FA++GPLS F+S H IP+D
Sbjct: 59 GRIIPSTGMAEFEVKYRAVVWKPFKGEVVDAVVTTVNKMGFFADVGPLSVFVSTHLIPSD 118
Query: 117 MQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
M+F P++NP Y V + I++ +RLKIVGTR D + I+AIG++ +DYLG
Sbjct: 119 MKFNPSANPPAY--VSPDENIEKGSRVRLKIVGTRTDVNEIYAIGSIKEDYLG 169
>gi|149244114|ref|XP_001526600.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
gi|146448994|gb|EDK43250.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
Length = 173
Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/173 (50%), Positives = 123/173 (71%), Gaps = 8/173 (4%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDS----IGA 56
MF+ L + LHP YFGPQ+ + ++ KL S+VEGTCTG++G+++ V +DS +G
Sbjct: 1 MFFLKDLSLNLTLHPSYFGPQMDQYLRDKLLSDVEGTCTGQFGYIVCV--LDSMNIDVGK 58
Query: 57 GLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
G I P G + VKYRA+V++PFKGEV+D VVT VNK+G FA++GPLS F+S H IP+D
Sbjct: 59 GRIIPSSGMAEFEVKYRAVVWKPFKGEVVDGVVTTVNKMGFFADVGPLSVFVSTHLIPSD 118
Query: 117 MQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
M+F P++NP Y S I++ ++RLKIVGTR D + I+AIG++ +DYLG
Sbjct: 119 MKFNPSANPPAYSSPDEN--IEKGSKVRLKIVGTRTDVNEIYAIGSIKEDYLG 169
>gi|320166538|gb|EFW43437.1| RNA polymerase II core subunit [Capsaspora owczarzaki ATCC 30864]
Length = 176
Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 125/174 (71%), Gaps = 4/174 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTI--DSIGAGL 58
MF++++L+ EI+LHP+YFGP+L + + +KLY+EVEGTC G+ GF++A+T++ + +G G
Sbjct: 1 MFFYMTLDKEIVLHPKYFGPRLRQALMEKLYTEVEGTCDGERGFIVAITSLSEEHLGRGR 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISH-HSIPTDM 117
+ G+G V Y V+Y+A+VFRP KGEV+DA+VT VNK+G FAE GP+S F+S +P++
Sbjct: 61 LMAGKGLVSYHVQYQAVVFRPVKGEVMDAIVTVVNKMGFFAEAGPISIFVSQVGGMPSEY 120
Query: 118 QFCPNSNPVCYKSVHGEV-VIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
F SNP C+KS + I ++RL+I G R+DA I +GT+ DDYLG
Sbjct: 121 SFDVTSNPPCFKSADMTIGAITVGSQVRLRIAGMRIDAESITTVGTIKDDYLGF 174
>gi|401885038|gb|EJT49169.1| hypothetical protein A1Q1_01650 [Trichosporon asahii var. asahii
CBS 2479]
Length = 171
Score = 179 bits (454), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/169 (50%), Positives = 115/169 (68%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L H ILLHP YFG QL + +K KLY +VEGTC+GK+G++I+V + IG G I
Sbjct: 1 MFFIRELTHTILLHPSYFGAQLEDYLKLKLYEDVEGTCSGKHGYIISVVNVTDIGEGKIM 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P G + Y AIV +PFKGEV+D V+ VNK+G FA +GPL F+S H + DM+F
Sbjct: 61 PSTGQARFKCSYTAIVMKPFKGEVVDGKVSNVNKMGFFAHVGPLQVFVSSHLVHADMKFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PN++P CY+S + IQ +R++IVG R++A+ IFAIGT+ DYLG
Sbjct: 121 PNASPPCYRS--ADETIQAGSRVRMEIVGCRIEANDIFAIGTIKKDYLG 167
>gi|388856504|emb|CCF49810.1| probable DNA-directed RNA polymerase II chain Rpb7 [Ustilago
hordei]
Length = 170
Score = 179 bits (454), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 117/169 (69%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L H+ LHP YFGP + E + QKL +VEGTCTGKYG++I V + +G G +
Sbjct: 1 MFFLKYLTHKTELHPSYFGPSMVEFLNQKLRDDVEGTCTGKYGYIIKVVGMIDVGQGKVI 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + Y+A+V +PFKGEV+DA +T VNK+G FAE+GPL+ F+S H IP + +F
Sbjct: 61 PGSGLAEFNSTYQAVVLKPFKGEVMDAKITNVNKMGFFAEVGPLNIFVSSHLIPIEYRFQ 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
P SNP + S +V + ++R+KIVGTRVDA+ IFAIGT+ +DYLG
Sbjct: 121 PESNPPEFVSASDRLV--KGRKVRIKIVGTRVDANEIFAIGTMKEDYLG 167
>gi|448519863|ref|XP_003868179.1| Rpb7 protein [Candida orthopsilosis Co 90-125]
gi|354544173|emb|CCE40896.1| hypothetical protein CPAR2_109340 [Candida parapsilosis]
gi|380352518|emb|CCG22744.1| Rpb7 protein [Candida orthopsilosis]
Length = 173
Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 87/173 (50%), Positives = 123/173 (71%), Gaps = 8/173 (4%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDS----IGA 56
MF+ L + LHP YFGPQ+ + ++ KL S+VEGTCTG++G+++ V +DS +G
Sbjct: 1 MFFLKDLSLNLTLHPSYFGPQMDQFLRDKLLSDVEGTCTGQFGYIVCV--LDSMNIDVGK 58
Query: 57 GLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
G I P G + VKYRA+V++PFKGEV+D VVT VNK+G FA++GPLS F+S H IP+D
Sbjct: 59 GRIIPTTGMAEFEVKYRAVVWKPFKGEVVDGVVTTVNKMGFFADVGPLSVFVSTHLIPSD 118
Query: 117 MQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
M+F P++NP Y S I++ ++RLKIVGTR D + I+AIG++ +DYLG
Sbjct: 119 MKFNPSANPPAYSSPDEN--IEKGSKVRLKIVGTRTDVNEIYAIGSIKEDYLG 169
>gi|392575439|gb|EIW68572.1| hypothetical protein TREMEDRAFT_71846 [Tremella mesenterica DSM
1558]
Length = 172
Score = 179 bits (453), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 91/169 (53%), Positives = 122/169 (72%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L H ILLHP YFG QL E ++QKLY +VEGTC+GKYG++I+V TI SIG G +
Sbjct: 1 MFFLRELTHTILLHPSYFGSQLEEYLRQKLYEDVEGTCSGKYGYIISVITITSIGEGKVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + Y AIV +PFKGEV+D V VNK+G FA +GPL F+S H + DM+F
Sbjct: 61 PGTGQARFKTTYTAIVMKPFKGEVVDGQVVNVNKMGFFAMVGPLQVFVSSHLVHADMKFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PN++P CY+S + VIQ+D ++R++IVG R++A+ IFAIGT+ D+LG
Sbjct: 121 PNASPPCYRS--ADEVIQKDSKVRMQIVGCRIEANDIFAIGTIKKDFLG 167
>gi|343426584|emb|CBQ70113.1| probable DNA-directed RNA polymerase II chain Rpb7 [Sporisorium
reilianum SRZ2]
Length = 170
Score = 179 bits (453), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 85/169 (50%), Positives = 118/169 (69%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ +L H+ LHP YFGP + E + QKL +VEGTCTGK+G++I V + +G G +
Sbjct: 1 MFFLKNLTHKTELHPSYFGPSMVEFLNQKLRDDVEGTCTGKHGYIIKVIGMVDVGQGRVI 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + Y+A+V +PFKGEV+DA +T VNK+G FAE+GPL+ F+S H IP + +F
Sbjct: 61 PGSGLAEFNSTYQAVVLKPFKGEVMDAKITNVNKMGFFAEVGPLNIFVSSHLIPIEYKFQ 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
P SNP + S +V + ++R+KIVGTRVDA+ IFAIGT+ +DYLG
Sbjct: 121 PESNPPEFVSASDRLV--KGRKVRIKIVGTRVDANEIFAIGTMKEDYLG 167
>gi|145351559|ref|XP_001420140.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580373|gb|ABO98433.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 179
Score = 179 bits (453), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 85/171 (49%), Positives = 117/171 (68%), Gaps = 2/171 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLI- 59
MF+H++LE I L PR+FG ++ +++KL EVEGTC+G+YGF++ VT + + G++
Sbjct: 1 MFFHVNLERNITLEPRHFGARMKAVLEEKLRHEVEGTCSGRYGFIVMVTRLAEVSEGVVT 60
Query: 60 QPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQF 119
G + +KY +VFRPFKGEV+DAVVTQVNK G FAE GPL F+S+ I DMQF
Sbjct: 61 DDGTARAKFHIKYDCVVFRPFKGEVMDAVVTQVNKFGFFAEAGPLQLFVSNALITEDMQF 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
+S CY S ++ IQ D +R++IVG R+DA+ IF I T+ DDYLGL
Sbjct: 121 -DSSGENCYVSDDQQIRIQRDASVRVRIVGMRIDANDIFCIATIKDDYLGL 170
>gi|242210404|ref|XP_002471045.1| predicted protein [Postia placenta Mad-698-R]
gi|220729947|gb|EED83813.1| predicted protein [Postia placenta Mad-698-R]
Length = 170
Score = 178 bits (452), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 90/170 (52%), Positives = 129/170 (75%), Gaps = 2/170 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L H ILLHP YFGP++ + ++ KLYS+VEGTC+G++G++IAV +I IG G++
Sbjct: 1 MFFIKELSHTILLHPSYFGPRMLQFLESKLYSDVEGTCSGQFGYIIAVVSILDIGKGMVI 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + +YRAIVF+PFKGEV+D VV VNK+G FA++GPL+ F+SH I D++F
Sbjct: 61 SGSGQAEFITRYRAIVFKPFKGEVVDGVVNNVNKMGFFADVGPLTVFVSHQLIHPDLKFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP + S + +I+++ ++RLKIVGTRVDA+ IFAIGT+ +D+LG+
Sbjct: 121 PNSNPPSFAS--EDQIIEKNTKVRLKIVGTRVDATEIFAIGTIKEDHLGV 168
>gi|389739088|gb|EIM80282.1| hypothetical protein STEHIDRAFT_105350 [Stereum hirsutum FP-91666
SS1]
Length = 170
Score = 178 bits (452), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 91/170 (53%), Positives = 128/170 (75%), Gaps = 2/170 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L H ILLHP YFGP++ + ++ KLYS+VEGTC+G++G++IAV +I IG G++
Sbjct: 1 MFFIKELTHTILLHPSYFGPRMLQFLESKLYSDVEGTCSGQFGYIIAVVSILDIGKGMVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + +YRAIVF+PFKGEV+D VV VNK+G FA++GPL+ F+SH I DM+F
Sbjct: 61 GGSGQAEFVTRYRAIVFKPFKGEVVDGVVNNVNKMGFFADVGPLTVFVSHQLIHPDMKFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
P SNP + S E +I+++ ++RLKIVGTRVDA+ IFAIGT+ +D+LG+
Sbjct: 121 PTSNPPSFAS--EEQIIEKNTKVRLKIVGTRVDATEIFAIGTIKEDHLGV 168
>gi|443898054|dbj|GAC75392.1| DNA-directed RNA polymerase subunit E' [Pseudozyma antarctica T-34]
Length = 170
Score = 178 bits (451), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 85/169 (50%), Positives = 117/169 (69%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L H+ LHP YFGP + E + QKL +VEGTCTGKYG++I V + +G G +
Sbjct: 1 MFFLKYLTHKTELHPSYFGPSMVEFLNQKLRDDVEGTCTGKYGYIIKVVGMIDVGQGKVI 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + Y+A+V +PFKGEV+DA +T VNK+G FAE+GPL+ F+S H IP + +F
Sbjct: 61 PGSGLAEFNSTYQAVVLKPFKGEVMDAKITNVNKMGFFAEVGPLNIFVSSHLIPIEYKFQ 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
P +NP + S +V + ++R+KIVGTRVDA+ IFAIGT+ +DYLG
Sbjct: 121 PEANPPEFVSAADRLV--KGRKVRIKIVGTRVDANEIFAIGTMKEDYLG 167
>gi|71022503|ref|XP_761481.1| hypothetical protein UM05334.1 [Ustilago maydis 521]
gi|46101350|gb|EAK86583.1| hypothetical protein UM05334.1 [Ustilago maydis 521]
Length = 170
Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/169 (50%), Positives = 117/169 (69%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L H+ LHP YFGP + E + QKL +VEGTCTGK+G++I V + +G G +
Sbjct: 1 MFFLKHLTHKTELHPSYFGPSMVEFLNQKLRDDVEGTCTGKHGYIIKVIGLVDVGQGKVI 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + Y+A+V +PFKGEV+DA +T VNK+G FAE+GPL+ F+S H IP + +F
Sbjct: 61 PGSGLAEFNSTYQAVVLKPFKGEVMDAKITNVNKMGFFAEVGPLNIFVSSHLIPIEYKFQ 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
P SNP + S +V + ++R+KIVGTRVDA+ IFAIGT+ +DYLG
Sbjct: 121 PESNPPEFVSASDRLV--KGRKVRIKIVGTRVDANEIFAIGTMKEDYLG 167
>gi|395323800|gb|EJF56256.1| hypothetical protein DICSQDRAFT_175060 [Dichomitus squalens
LYAD-421 SS1]
Length = 170
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/170 (52%), Positives = 128/170 (75%), Gaps = 2/170 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L H I LHP YFGP++ + ++ KLYS+VEGTC+G++G++IAV +I IG G++
Sbjct: 1 MFFIKELSHTIHLHPSYFGPRMLQFLESKLYSDVEGTCSGEFGYIIAVVSILDIGKGMVM 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + +YRAIVF+PFKG+V+D VV VNK+G FA++GPL+ F+SH I +++F
Sbjct: 61 PGSGQAEFVTRYRAIVFKPFKGQVVDGVVNNVNKMGFFADVGPLTVFVSHQLIHPELKFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP + S + VI+++ +RLKIVGTRVDA+ IFAIGT+ +D+LG+
Sbjct: 121 PNSNPPSFAS--EDQVIEKNTRVRLKIVGTRVDATEIFAIGTIKEDHLGV 168
>gi|409081234|gb|EKM81593.1| hypothetical protein AGABI1DRAFT_111877 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426196468|gb|EKV46396.1| hypothetical protein AGABI2DRAFT_193120 [Agaricus bisporus var.
bisporus H97]
Length = 170
Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/170 (53%), Positives = 126/170 (74%), Gaps = 2/170 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L H ILLHP YFGP++ ++ KLYS+VEGTC+G++G++IAV +I IG G++
Sbjct: 1 MFFIKELTHTILLHPSYFGPRMLSFLESKLYSDVEGTCSGQFGYIIAVVSILDIGKGMVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + +YRAIVF+PFKGEV+D VV VNK+G FA+ GPL+ FISH I +M+F
Sbjct: 61 SGSGQAEFVTRYRAIVFKPFKGEVVDGVVNNVNKMGFFADAGPLTVFISHQLIHPNMRFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP + S + +I+++ +RLKIVGTRVDA+ IFAIGT+ +D+LG+
Sbjct: 121 PNSNPPSFAS--EDQIIEKNTRVRLKIVGTRVDATEIFAIGTIKEDHLGV 168
>gi|440790049|gb|ELR11338.1| DNAdirected RNA polymerase II subunit RPB7, putative, partial
[Acanthamoeba castellanii str. Neff]
Length = 153
Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/167 (53%), Positives = 111/167 (66%), Gaps = 17/167 (10%)
Query: 4 HISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQ 63
I L + LHPR+FG L T+ QKL++EVEGTC+G+YGF+I VT+I ++G G I G
Sbjct: 2 QILLNRNLQLHPRHFGANLRNTIIQKLHTEVEGTCSGRYGFIIMVTSIATVGLGKINDGT 61
Query: 64 GFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNS 123
G V +PV YRAIVFRPFKGEV+DAVVTQVNK+G AE+GPL F+S H IPTDM F P
Sbjct: 62 GMVTFPVAYRAIVFRPFKGEVVDAVVTQVNKMGFMAEVGPLQVFVSKHLIPTDMTFDPTE 121
Query: 124 NPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
+ C+ S V I +DDE FAIG++ +DYLGL
Sbjct: 122 H--CFASEDESVKISKDDE---------------FAIGSIKEDYLGL 151
>gi|384247619|gb|EIE21105.1| RNA polymerase II subunit B7 [Coccomyxa subellipsoidea C-169]
Length = 176
Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/157 (53%), Positives = 111/157 (70%), Gaps = 1/157 (0%)
Query: 14 HPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYR 73
PR+FGP+L E ++QKL SEVEGTC+GKYGF+I VT + +G G I+ G G ++ V+Y
Sbjct: 14 QPRFFGPRLREVLEQKLISEVEGTCSGKYGFIICVTGMGHVGKGSIREGSGTALFKVQYS 73
Query: 74 AIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHG 133
+V RPFKGEVLD VV+ VNKVG FA+ GPL F+S+H IP D +F P + S
Sbjct: 74 CVVLRPFKGEVLDCVVSSVNKVGFFADAGPLQLFVSNHLIPEDFEFNATGEPA-FVSTDE 132
Query: 134 EVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
V +Q E+RL+IVGTR+DAS IF +GT+ +DYLG+
Sbjct: 133 AVRVQAGAEVRLRIVGTRMDASEIFCVGTIKEDYLGV 169
>gi|392585942|gb|EIW75280.1| hypothetical protein CONPUDRAFT_132203 [Coniophora puteana
RWD-64-598 SS2]
Length = 170
Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 87/170 (51%), Positives = 128/170 (75%), Gaps = 2/170 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L H ILLHP YFGP++ + ++ KLY++VEGTC+G++G++IAV +I IG G++
Sbjct: 1 MFFIKELTHTILLHPSYFGPRMTQFLESKLYADVEGTCSGQFGYIIAVVSILDIGRGMVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + +YRAIVF+PFKGEV+D VV VNK+G FA++GPL+ F+SH I D++F
Sbjct: 61 SGSGQAEFVTRYRAIVFKPFKGEVVDGVVNNVNKMGFFADVGPLTVFVSHQLIHPDLKFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP + S + +I+++ +R+K+VGTRVDA+ IFAIGT+ +D+LG+
Sbjct: 121 PNSNPPSFAS--DDQIIEKNTRVRVKLVGTRVDATEIFAIGTIKEDHLGV 168
>gi|301099953|ref|XP_002899067.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Phytophthora
infestans T30-4]
gi|262104379|gb|EEY62431.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Phytophthora
infestans T30-4]
Length = 177
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/172 (49%), Positives = 120/172 (69%), Gaps = 2/172 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTI--DSIGAGL 58
MF+ L ++LLHP +FGP+L++ ++ +L EVEGT GKYG+VI VT + + IG G+
Sbjct: 1 MFFLKQLSRDLLLHPMHFGPKLHDIIRLRLIEEVEGTSMGKYGYVITVTEVRDEDIGKGV 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
IQ GFV + ++YRAI+FRPFK +VLDAVVT VN++G FA++GPL F+S H++PTD+
Sbjct: 61 IQDNSGFVCFNIRYRAILFRPFKNQVLDAVVTVVNQLGFFADVGPLQVFVSRHAMPTDLN 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
+ + S EV I++ +RLKI+G VD + I AIGT+ DDYLGL
Sbjct: 121 NGYDHESNAWISDDREVEIRKGCGVRLKIMGVSVDVTEINAIGTIKDDYLGL 172
>gi|255730463|ref|XP_002550156.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240132113|gb|EER31671.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 173
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/173 (49%), Positives = 123/173 (71%), Gaps = 8/173 (4%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDS----IGA 56
MF+ L + LHP +FGPQ+ + ++ KL S+VEGTCTG++G+++ V +DS +G
Sbjct: 1 MFFLKDLSLNLTLHPSFFGPQMDQYLRDKLLSDVEGTCTGQFGYIVCV--LDSSHIDVGK 58
Query: 57 GLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
G I PG G + VKYRA+V++PFKGEV+DAVV VNK+G FA++GPLS F+S H IP+D
Sbjct: 59 GRIIPGTGMAEFEVKYRAVVWKPFKGEVVDAVVHTVNKMGFFADVGPLSVFVSTHLIPSD 118
Query: 117 MQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
M++ ++NP Y S + I++ +RLKIVGTR D + I+AIG++ +DYLG
Sbjct: 119 MKYNSSANPPSYSS--NDEHIEKGSRVRLKIVGTRTDVNEIYAIGSIKEDYLG 169
>gi|320582151|gb|EFW96369.1| RNA polymerase II subunit [Ogataea parapolymorpha DL-1]
Length = 172
Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/173 (49%), Positives = 124/173 (71%), Gaps = 7/173 (4%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAV---TTIDSIGAG 57
MF+ L + LHP YFGPQ+ + ++QKL ++VEGTCTG++G++I V +ID +G G
Sbjct: 1 MFFIKDLSLNLTLHPSYFGPQMNQYLQQKLLTDVEGTCTGQFGYIICVLDSMSID-VGKG 59
Query: 58 LIQPGQ-GFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
I PGQ G+ + VKYRA+V++PFKGEV+DA+V+ VN +G FA++GPLS FIS H IP D
Sbjct: 60 KIVPGQQGYAEFEVKYRAVVWKPFKGEVVDAIVSSVNNMGFFADVGPLSVFISKHLIPKD 119
Query: 117 MQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
M++ P+ P Y + + VI + ++R+KI+GTR D + I AIG++ +DYLG
Sbjct: 120 MKYTPSHTPPAY--ISEDQVIMKGSKVRIKIIGTRSDVNSISAIGSIKEDYLG 170
>gi|308808622|ref|XP_003081621.1| DNA-directed RNA polymerase subunit E' (ISS) [Ostreococcus tauri]
gi|116060086|emb|CAL56145.1| DNA-directed RNA polymerase subunit E' (ISS) [Ostreococcus tauri]
Length = 1353
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 87/187 (46%), Positives = 118/187 (63%), Gaps = 18/187 (9%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVE----------------GTCTGKYGF 44
MF+H++LE I L PR+FG ++ +++KL EVE GTC+G+YGF
Sbjct: 1160 MFFHVNLERNITLEPRHFGARMRAVLEEKLRHEVESSRLTPTDAFTNTQVEGTCSGRYGF 1219
Query: 45 VIAVTTIDSIGAGLI-QPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGP 103
++ VT +D + G++ G + VKY +VFRPFKGEV+DAVVTQVNK G FAE GP
Sbjct: 1220 IVMVTRVDDVSEGVVVDDGTARAKFHVKYDCVVFRPFKGEVVDAVVTQVNKFGFFAEAGP 1279
Query: 104 LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTL 163
L F+S+ I DMQF +S CY S ++ IQ D +R++IVG R+DA+ IF I T+
Sbjct: 1280 LQLFVSNALITEDMQF-DSSGENCYVSDDQQIRIQRDASVRVRIVGMRIDANDIFCIATI 1338
Query: 164 MDDYLGL 170
DDYLGL
Sbjct: 1339 KDDYLGL 1345
>gi|255073033|ref|XP_002500191.1| predicted protein [Micromonas sp. RCC299]
gi|226515453|gb|ACO61449.1| predicted protein [Micromonas sp. RCC299]
Length = 185
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/170 (46%), Positives = 115/170 (67%), Gaps = 1/170 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLI- 59
MF+HI LE I+L PR+FG + +T+ Q+L EVEG+CTGK+G+++ VT +I G++
Sbjct: 1 MFWHIKLERNIVLEPRFFGRNMRDTLMQRLKHEVEGSCTGKHGYIVMVTDFTNISEGMVT 60
Query: 60 QPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQF 119
G + V++ AI FRPFKG+VLDAVVT+VNK G FAE GP++ F+S+ I DM+F
Sbjct: 61 DDGTARAKFRVEFDAIAFRPFKGQVLDAVVTEVNKFGFFAEAGPMNLFVSNQLISDDMKF 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
N Y S V +Q++ E+R+++VG R+DA IF + T+ +DYLG
Sbjct: 121 ESIDNANRYVSSDKSVSVQKNGEVRVRVVGMRIDAQEIFCVATMKEDYLG 170
>gi|326426973|gb|EGD72543.1| hypothetical protein PTSG_00566 [Salpingoeca sp. ATCC 50818]
Length = 171
Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 81/169 (47%), Positives = 118/169 (69%), Gaps = 1/169 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ ++LEH++LL PR+ GPQL E++++KLY +VE C GK+G++++V I IG G I
Sbjct: 1 MFFKLTLEHDVLLPPRFLGPQLAESIRRKLYEDVESKCIGKHGYIVSVIEIVKIGEGEIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
+G ++PV YRA+VFRP K EV+DA+V+ V K+G+FAE+GPL FI IP +M F
Sbjct: 61 VARGETLFPVTYRALVFRPVKNEVVDAIVSTVTKMGIFAEVGPLRVFIHFQWIP-NMVFD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
+NP C+++ IQ +D IR++I+G RV AS I A G+L D+LG
Sbjct: 120 DTANPPCFRTDDFAEKIQPEDSIRIRILGVRVQASSIAATGSLAGDFLG 168
>gi|134110566|ref|XP_776110.1| hypothetical protein CNBD1580 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258778|gb|EAL21463.1| hypothetical protein CNBD1580 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 169
Score = 172 bits (435), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 85/169 (50%), Positives = 119/169 (70%), Gaps = 5/169 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L H ILLHP YFG QL + ++QKLY +VEGTC+GK+G++I+V TI IG G I
Sbjct: 1 MFFLRELTHTILLHPSYFGAQLEDYLRQKLYEDVEGTCSGKHGYIISVITITDIGEGKII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P G + +Y AIV +PFKGEV+DA +V +G FA +GPL F+S H +DM+F
Sbjct: 61 PSTGQAKFKTRYTAIVMKPFKGEVVDA---KVVNMGFFAMVGPLQVFVSCHLTHSDMKFD 117
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
P+ +P CY+S + +IQ+D ++R++IVG RV+A+ +FAIGT+ DYLG
Sbjct: 118 PSVSPPCYRS--NDEIIQKDTKVRIQIVGCRVEANDMFAIGTIKKDYLG 164
>gi|210075719|ref|XP_002143054.1| YALI0D11627p [Yarrowia lipolytica]
gi|199425798|emb|CAR64319.1| YALI0D11627p [Yarrowia lipolytica CLIB122]
Length = 190
Score = 172 bits (435), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 114/165 (69%), Gaps = 3/165 (1%)
Query: 7 LEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTID-SIGAGLIQPGQGF 65
L + LHP YFGPQ+ + ++ KL ++VEGTCTG++G+++ V IG G + P G
Sbjct: 27 LTLSLTLHPSYFGPQMGQYLRSKLLADVEGTCTGEFGYILCVLDQPFDIGKGRVVPSNGS 86
Query: 66 VVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNP 125
+ V YRAIV+RPFK EV+DA+VT VNK+G F ++GPLS F+S H IP DM+F P++NP
Sbjct: 87 AEFTVNYRAIVWRPFKNEVVDAIVTNVNKMGFFGDVGPLSVFVSSHLIPPDMKFNPSANP 146
Query: 126 VCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
Y V + VI++ +RLKIVG R D +FAIGT+ +DYLGL
Sbjct: 147 PAY--VSEDQVIEKGSRVRLKIVGVRADVGEMFAIGTIKEDYLGL 189
>gi|325185644|emb|CCA20126.1| DNAdirected RNA polymerase II 19 kDa polypeptide pu [Albugo
laibachii Nc14]
Length = 179
Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 82/172 (47%), Positives = 120/172 (69%), Gaps = 2/172 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTI--DSIGAGL 58
MF+ L ++LLHP +FGP+L++ ++ +L EVEGT GKYG+VI VT + + IG G+
Sbjct: 1 MFFLKQLSRDLLLHPMHFGPKLHDIIRLRLIEEVEGTSMGKYGYVITVTEVRDEDIGKGV 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
IQ G+V + ++YRAI+FRPFK EVLDAVV+ VN++G FA++GPL F+S H++PTD+
Sbjct: 61 IQDNSGYVCFNIRYRAILFRPFKNEVLDAVVSVVNQLGFFADVGPLQVFVSRHAMPTDLN 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
+ + S EV I++ +RL+I+G +D + I AIGT+ DDYLGL
Sbjct: 121 NGYDHENNAWISDDREVEIRKGCGVRLRIMGVSIDVTEINAIGTIKDDYLGL 172
>gi|328773740|gb|EGF83777.1| hypothetical protein BATDEDRAFT_29094 [Batrachochytrium
dendrobatidis JAM81]
Length = 180
Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 120/174 (68%), Gaps = 5/174 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L H I LHP++FGPQ+ + ++LY EVEG C+G++G++I+V I +G G++Q
Sbjct: 1 MFFLKQLSHTINLHPQFFGPQIRAFLTRRLYEEVEGICSGQFGYIISVVDIVDVGKGVLQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
GF + + Y+AIVF+PFK +V+D +VT VNK+G +A++GPL F+S H IP ++F
Sbjct: 61 SNTGFAQFEILYKAIVFKPFKNQVVDGLVTTVNKIGFWADVGPLQVFVSSHLIPGYLKFD 120
Query: 121 PNSNPVCY---KSVHGEVV--IQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
N+NP Y GE +++ +RL+IVGTRVDA+ IFAIGT+ +D+LG
Sbjct: 121 ANANPPAYVGEGQEFGEAALRVEKGAVVRLRIVGTRVDATEIFAIGTIKEDFLG 174
>gi|358054534|dbj|GAA99460.1| hypothetical protein E5Q_06159 [Mixia osmundae IAM 14324]
Length = 207
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 115/174 (66%), Gaps = 5/174 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDS-----IG 55
MF+ +L H I LHP YFG + VK KL+ +V GTC+G +G+++AV + S
Sbjct: 1 MFFLKNLTHTINLHPSYFGANTSDYVKHKLFEDVSGTCSGLHGYIVAVLVVGSGEGPFKP 60
Query: 56 AGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPT 115
G IQPG G + V Y A+VFRPFKGEVLD VVT VNK+G F E+G L+ F+S H +P
Sbjct: 61 QGTIQPGTGMAEFEVPYLAVVFRPFKGEVLDGVVTTVNKMGFFVEVGALTVFVSAHLMPG 120
Query: 116 DMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
DM+F +S P + + IQ+D +R+KIVGTR+DA+ IFAIGT+ +DYLG
Sbjct: 121 DMKFSEDSPPRFSRMGDDSMAIQKDVVVRVKIVGTRIDATEIFAIGTIKEDYLG 174
>gi|452819737|gb|EME26790.1| DNA-directed RNA polymerase II subunit G [Galdieria sulphuraria]
Length = 173
Score = 168 bits (425), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 117/171 (68%), Gaps = 4/171 (2%)
Query: 2 FYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAV-TTIDSIGAGLIQ 60
F+ + L + +HPR+F +L ET+ Q L EVEGT +G++GFV++V + + G+++
Sbjct: 3 FFQVELTKNVRVHPRHFHSKLKETLIQTLMDEVEGTVSGRFGFVVSVLEVLQPLPKGILR 62
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G GF VYP+KY+A+VFRPFKGEVLDAVVT V + G+FA++GPL+ F+S H IP+DM
Sbjct: 63 EGFGFAVYPLKYKALVFRPFKGEVLDAVVTNVTRHGIFAQVGPLTIFVSRHQIPSDM--T 120
Query: 121 PNSNPVCYKS-VHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
+ Y S V IQ D IRL++ G ++DAS A+GT++DDYLGL
Sbjct: 121 HDEETASYISVVEKAERIQRDSAIRLRVNGIKIDASSFTAVGTILDDYLGL 171
>gi|302837432|ref|XP_002950275.1| hypothetical protein VOLCADRAFT_74564 [Volvox carteri f.
nagariensis]
gi|300264280|gb|EFJ48476.1| hypothetical protein VOLCADRAFT_74564 [Volvox carteri f.
nagariensis]
Length = 176
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 116/171 (67%), Gaps = 2/171 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFY+++L I +HP++FGP+L E +++KL +E EGTCTGKYG+V+AVT +D IG G I+
Sbjct: 1 MFYYLTLNKSIDIHPKHFGPKLREVIREKLIAETEGTCTGKYGYVVAVTKVDDIGRGRIR 60
Query: 61 PGQ-GFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQF 119
Q GF + V Y IV RP+K EVLDAVVT VNK+G FA+ GPL F++ H IP + +F
Sbjct: 61 QDQSGFATFDVTYGCIVCRPYKKEVLDAVVTSVNKMGFFAQAGPLQLFVTQHLIPEEFEF 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
+S + SV IQ +R++I+G + D + +F I T+ DDYLG+
Sbjct: 121 -DSSGDSSWVSVDQTTHIQPGTHVRVRILGIKYDPTEVFCIATMKDDYLGV 170
>gi|164657466|ref|XP_001729859.1| hypothetical protein MGL_2845 [Malassezia globosa CBS 7966]
gi|159103753|gb|EDP42645.1| hypothetical protein MGL_2845 [Malassezia globosa CBS 7966]
Length = 186
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 82/185 (44%), Positives = 118/185 (63%), Gaps = 18/185 (9%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKY----------------GF 44
MF+ +L+H LHP +FGP + E + +KL +VEGTC+G Y G+
Sbjct: 1 MFFLKTLDHRTELHPSFFGPSMIEFLNRKLRDDVEGTCSGVYVRTYKSMRLMLILESQGY 60
Query: 45 VIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL 104
+I V ++ +G G + PG G + +Y+AIV +PF GEV+DA +T VNK+G FAE+GPL
Sbjct: 61 IIKVVSVLDVGQGKVMPGTGLAEFRSRYQAIVLKPFNGEVVDAKITNVNKMGFFAEVGPL 120
Query: 105 SCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLM 164
S F+S H +P D +F P+SNP + S +V + +R++IVGTRVDA+ IFAIGT+
Sbjct: 121 SIFVSSHLLPIDYKFHPDSNPPEFTSPTDSLV--KGRRVRVRIVGTRVDANEIFAIGTMK 178
Query: 165 DDYLG 169
+DYLG
Sbjct: 179 EDYLG 183
>gi|159467891|ref|XP_001692125.1| DNA-directed RNA polymerase II, 19 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158278852|gb|EDP04615.1| DNA-directed RNA polymerase II, 19 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 176
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 80/171 (46%), Positives = 115/171 (67%), Gaps = 2/171 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFY ++L + +HP++FG +L E +++KL +E EGTCTGKYG+V+AVT +D IG G I+
Sbjct: 1 MFYFLTLSKSLDIHPKHFGSKLREVIREKLIAETEGTCTGKYGYVVAVTKVDDIGRGRIR 60
Query: 61 PGQ-GFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQF 119
Q G+ + V Y IV RP+KGEVLDAVVT VNK+G FA+ GPL F++ H IP + +F
Sbjct: 61 QDQSGYATFEVSYGCIVCRPYKGEVLDAVVTSVNKMGFFAQAGPLQLFVTQHLIPDEFEF 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
S+ + S+ IQ +R++IVG + D S +F I T+ +DYLG+
Sbjct: 121 -DTSDDNSWISMDQTTRIQGGTHVRIRIVGIKYDPSEVFCIATMKEDYLGV 170
>gi|345566807|gb|EGX49749.1| hypothetical protein AOL_s00078g238 [Arthrobotrys oligospora ATCC
24927]
Length = 169
Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/169 (47%), Positives = 112/169 (66%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ LE I LHP YFGP + E + KL ++VEGTCTG+Y ++I V +I G I
Sbjct: 1 MFFLYDLERTITLHPYYFGPHMREYLINKLLTDVEGTCTGRY-YIICVLDAYNISMGKIL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + + YRA+V+RPFKGE +D VVT V+K+G FA +GPL F+S H IP D++F
Sbjct: 60 PGSGLAEFTISYRAVVWRPFKGETVDGVVTAVSKLGFFANVGPLPVFVSTHLIPADVKFD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
P +NP + G+ VI++ +RLK+VGTR D + AIG++ +DYLG
Sbjct: 120 PTANPPQFSDNEGQ-VIEKGAHVRLKLVGTRSDVGKMSAIGSIKEDYLG 167
>gi|296423748|ref|XP_002841415.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637653|emb|CAZ85606.1| unnamed protein product [Tuber melanosporum]
Length = 180
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/169 (46%), Positives = 116/169 (68%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L I LHP YFGP + + + KL+ +VEG+CTG+Y F+I V ++I G I
Sbjct: 1 MFFIHELNRTITLHPSYFGPHMRDYLIHKLHEDVEGSCTGRY-FIICVIEYENITLGRII 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+G + + Y+A+V+RPFKGE +D VV+ VNK+G FAE+GPL+ F+S H IP D++F
Sbjct: 60 PGKGDAEFTITYKAVVWRPFKGETVDGVVSSVNKMGFFAEVGPLTVFVSSHLIPRDIKFD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
P SNP + S +G+ +I + IR+K++GTR D + AIG++ +DYLG
Sbjct: 120 PTSNPPQF-SDNGDQIINKGAHIRIKLMGTRSDVGKMHAIGSIKEDYLG 167
>gi|254574492|ref|XP_002494355.1| RNA polymerase II subunit [Komagataella pastoris GS115]
gi|238034154|emb|CAY72176.1| RNA polymerase II subunit [Komagataella pastoris GS115]
gi|328353828|emb|CCA40225.1| DNA-directed RNA polymerase II subunit G [Komagataella pastoris CBS
7435]
Length = 171
Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 122/172 (70%), Gaps = 6/172 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAV---TTIDSIGAG 57
MF+ L + LHP YFGPQ+ + +++KL ++VEGTCTG++G+++ V ID +G G
Sbjct: 1 MFFLKDLSLILTLHPSYFGPQMNQYLREKLLTDVEGTCTGQFGYIVTVLDGMNID-VGKG 59
Query: 58 LIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDM 117
I PG G + VKYRA+V++PFKGEV+DA+V+ V+ +G FA++GPL+ F+S IP ++
Sbjct: 60 RIIPGSGSAEFEVKYRAVVWKPFKGEVVDAIVSNVSPIGFFADVGPLNVFVSTRLIPDNL 119
Query: 118 QFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
+ P+++P Y S + +I + ++RLK+VGTR D + I+AIG++ +D+LG
Sbjct: 120 VYNPSNSPPAYMS--NDELITKGSKVRLKVVGTRTDVNEIYAIGSIKEDFLG 169
>gi|406866054|gb|EKD19094.1| RNA polymerase Rpb7-like domain-containing protein [Marssonina
brunnea f. sp. 'multigermtubi' MB_m1]
Length = 172
Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 114/169 (67%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ +LE ++ LHP YFG ++E V KL +VEGTCTG+Y F+I + +I G I
Sbjct: 1 MFFLYNLERQVTLHPSYFGRNMHELVTGKLLKDVEGTCTGRY-FIITIMDTFNISEGRIL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + V YRA+V+RPFKGE +DA+VT VN+VG FA+ GPL F+S H IP D++F
Sbjct: 60 PGSGLAEFTVGYRAVVWRPFKGETVDAIVTSVNQVGFFADAGPLPIFVSAHLIPPDIKFD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PN+ P + + + + VI+ +R+K++GTR + ++AI ++ +DYLG
Sbjct: 120 PNATPPQFTN-NEDSVIEVGTHVRVKLIGTRAEVGEMYAIASIKEDYLG 167
>gi|156050367|ref|XP_001591145.1| hypothetical protein SS1G_07770 [Sclerotinia sclerotiorum 1980]
gi|154692171|gb|EDN91909.1| hypothetical protein SS1G_07770 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 167
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 112/169 (66%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ +LE ++ LHP YFG ++E V KL +VEGTCTG Y ++I + +I G I
Sbjct: 1 MFFLYNLERQVTLHPSYFGRNMHELVTGKLLKDVEGTCTGLY-YIITIMDTFNISEGRIL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + V YRA+V+RPFKGE +DA+VT VN VG FA+ GPL F+S H IP D++F
Sbjct: 60 PGSGLAEFTVGYRAVVWRPFKGETVDAIVTSVNAVGFFADAGPLPLFVSAHLIPRDIKFD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
N+ P + + + + VI+ +R+KI+GTR + +FAIG++ +DYLG
Sbjct: 120 ANATPPQFTN-NEDSVIEPGTHVRVKIIGTRPEVGAMFAIGSIKEDYLG 167
>gi|154295091|ref|XP_001547983.1| hypothetical protein BC1G_13674 [Botryotinia fuckeliana B05.10]
gi|347831716|emb|CCD47413.1| similar to DNA-directed RNA polymerase II subunit rpb7 [Botryotinia
fuckeliana]
Length = 172
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 112/169 (66%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ +LE ++ LHP YFG ++E V KL +VEGTCTG Y ++I + +I G I
Sbjct: 1 MFFLYNLERQVTLHPSYFGRNMHELVTGKLLKDVEGTCTGLY-YIITIMDTFNISEGRIL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + V YRA+V+RPFKGE +DA+VT VN VG FA+ GPL F+S H IP D++F
Sbjct: 60 PGSGLAEFTVGYRAVVWRPFKGETVDAIVTSVNAVGFFADAGPLPLFVSAHLIPRDIKFD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
N+ P + + + + VI+ +R+KI+GTR + +FAIG++ +DYLG
Sbjct: 120 ANATPPQFTN-NEDSVIEPGTHVRVKIIGTRPEVGAMFAIGSIKEDYLG 167
>gi|171684353|ref|XP_001907118.1| hypothetical protein [Podospora anserina S mat+]
gi|170942137|emb|CAP67789.1| unnamed protein product [Podospora anserina S mat+]
Length = 249
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/169 (46%), Positives = 109/169 (64%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ +LE +LLHP YFG + E V KL +VEGTCTG Y ++IA+ + G I
Sbjct: 1 MFFLHNLERRVLLHPSYFGKNMTELVTTKLVKDVEGTCTGDY-YIIAIMDTFDLSEGRIL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + V YRA+V+RPFKGEV+DA+ T VN+ G F+ GPLS F+S HSIP D+Q+
Sbjct: 60 PGSGMAEFTVGYRAVVWRPFKGEVVDAICTSVNQHGFFSNAGPLSIFVSTHSIPPDIQYD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
N+ P + + H ++VI+ +R+KI+G R +FAIG + DYLG
Sbjct: 120 ANATPPQFTN-HSDIVIEPGTHVRIKIMGLRTGVGEMFAIGKIDGDYLG 167
>gi|430814255|emb|CCJ28493.1| unnamed protein product [Pneumocystis jirovecii]
Length = 150
Score = 158 bits (399), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 77/150 (51%), Positives = 110/150 (73%), Gaps = 4/150 (2%)
Query: 22 LYETVKQKLYSEVEGTCTGKYGFVIAVTTID--SIGAGLIQPGQGFVVYPVKYRAIVFRP 79
+ + +K KL S+VEGTC+G YG++I V + IG G I PG+G + V Y+A+V+RP
Sbjct: 1 MRDYLKAKLLSDVEGTCSGNYGYIICVLDSNKIDIGKGRIVPGKGEAEFEVGYKAVVWRP 60
Query: 80 FKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQE 139
F+GEVLDA+V+ VNK+G FA++GP S F+S H IP+D++F P SNP Y S + ++++
Sbjct: 61 FRGEVLDAIVSTVNKMGFFADVGPFSIFVSSHLIPSDLKFDPTSNPPSYASE--DQLVEK 118
Query: 140 DDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
++RLKIVGTR DA+ IFAIGT+ +DYLG
Sbjct: 119 GAKVRLKIVGTRNDATEIFAIGTIKEDYLG 148
>gi|154283689|ref|XP_001542640.1| hypothetical protein HCAG_02811 [Ajellomyces capsulatus NAm1]
gi|150410820|gb|EDN06208.1| hypothetical protein HCAG_02811 [Ajellomyces capsulatus NAm1]
gi|225561964|gb|EEH10244.1| RNA polymerase II subunit 7 [Ajellomyces capsulatus G186AR]
gi|240275577|gb|EER39091.1| RNA polymerase II subunit 7 [Ajellomyces capsulatus H143]
gi|325091406|gb|EGC44716.1| RNA polymerase II subunit 7 [Ajellomyces capsulatus H88]
Length = 169
Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 111/169 (65%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ LEH + LHP +FG + E + QKL +VEG CTG Y V + T D I G +
Sbjct: 1 MFFIHFLEHVLTLHPTFFGSHVKEYLTQKLLDDVEGVCTGDYYIVCVMDTYD-ISEGRVL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G Y + YRAIV++PFKGE +DA+VT V G+FAE+GPL+ F+S H IP ++++
Sbjct: 60 PGSGLAEYTIMYRAIVWKPFKGETVDAIVTSVKNQGIFAEVGPLTVFVSKHLIPPEIKWD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
P++ P Y +GE VI++ +R+K++G R D +FAIG++ +DYLG
Sbjct: 120 PDATPPQYTD-NGEQVIEKGTNLRIKLIGLRNDVRNMFAIGSIKEDYLG 167
>gi|226291032|gb|EEH46460.1| RNA polymerase II subunit 7 [Paracoccidioides brasiliensis Pb18]
Length = 169
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 111/169 (65%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ LEH + LHP +FG + E + QKL +VEG CTG Y V + T D I G +
Sbjct: 1 MFFIHFLEHVLTLHPTFFGSHVKEYLTQKLLDDVEGVCTGDYYIVCVMDTYD-ISEGRVI 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G Y + YRAIV++PFKGE +DAVVT V G+FAE+GPL+ F+S H IP ++++
Sbjct: 60 PGSGLAEYTIMYRAIVWKPFKGETVDAVVTSVKNQGIFAEVGPLTVFVSKHLIPPEIKWD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
P++ P Y +GE VI++ +R+K++G R D +FAIG++ +DYLG
Sbjct: 120 PDATPPQYTD-NGEQVIEKGTNLRIKLIGLRNDVRNMFAIGSIKEDYLG 167
>gi|239607718|gb|EEQ84705.1| RNA polymerase II subunit 7 [Ajellomyces dermatitidis ER-3]
gi|327355593|gb|EGE84450.1| RNA polymerase II subunit 7 [Ajellomyces dermatitidis ATCC 18188]
Length = 169
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 111/169 (65%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ LEH + LHP +FG + E + QKL +VEG CTG Y V + T D I G +
Sbjct: 1 MFFIHFLEHVLTLHPTFFGSHVKEYLTQKLLDDVEGVCTGDYYIVCVMDTYD-ISEGRVL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G Y + YRAIV++PFKGE +DA+VT V G+FAE+GPL+ F+S H IP ++++
Sbjct: 60 PGSGLAEYTIMYRAIVWKPFKGETVDAIVTSVKNQGIFAEVGPLTVFVSKHLIPPEIKWD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
P++ P Y +GE VI++ +R+K++G R D +FAIG++ +DYLG
Sbjct: 120 PDATPPQYTD-NGEQVIEKGTNLRIKLIGLRNDVRNMFAIGSIKEDYLG 167
>gi|295665476|ref|XP_002793289.1| DNA-directed RNA polymerase II subunit RPB7 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226278203|gb|EEH33769.1| DNA-directed RNA polymerase II subunit RPB7 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 202
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 111/169 (65%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ LEH + LHP +FG + E + QKL +VEG CTG Y V + T D I G +
Sbjct: 1 MFFIHFLEHVLTLHPTFFGSHVKEYLTQKLLDDVEGVCTGDYYIVCVMDTYD-ISEGRVI 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G Y + YRAIV++PFKGE +DAVVT V G+FAE+GPL+ F+S H IP ++++
Sbjct: 60 PGSGLAEYTIMYRAIVWKPFKGETVDAVVTSVKNQGIFAEVGPLTVFVSKHLIPPEIKWD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
P++ P Y +GE VI++ +R+K++G R D +FAIG++ +DYLG
Sbjct: 120 PDATPPQYTD-NGEQVIEKGTNLRIKLIGLRNDVRNMFAIGSIKEDYLG 167
>gi|225679312|gb|EEH17596.1| RNA polymerase II subunit 7 [Paracoccidioides brasiliensis Pb03]
Length = 195
Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 111/169 (65%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ LEH + LHP +FG + E + QKL +VEG CTG Y V + T D I G +
Sbjct: 1 MFFIHFLEHVLTLHPTFFGSHVKEYLTQKLLDDVEGVCTGDYYIVCVMDTYD-ISEGRVI 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G Y + YRAIV++PFKGE +DAVVT V G+FAE+GPL+ F+S H IP ++++
Sbjct: 60 PGSGLAEYTIMYRAIVWKPFKGETVDAVVTSVKNQGIFAEVGPLTVFVSKHLIPPEIKWD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
P++ P Y +GE VI++ +R+K++G R D +FAIG++ +DYLG
Sbjct: 120 PDATPPQYTD-NGEQVIEKGTNLRIKLIGLRNDVRNMFAIGSIKEDYLG 167
>gi|322697943|gb|EFY89717.1| putative DNA-directed RNA polymerase II chain Rpb7 [Metarhizium
acridum CQMa 102]
Length = 174
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 110/169 (65%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ ++E + LHP YFG ++E V KL +VEGTC G Y ++I++ I G I
Sbjct: 1 MFFLYNMERRVTLHPSYFGRNMHELVTSKLLKDVEGTCAGSY-YIISIMDTFDISEGRIL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + V YRA+V+RPFKGE +DAVV +N G FA+ GPL F+S H IP+D+++
Sbjct: 60 PGNGLAEFTVGYRAVVWRPFKGETVDAVVYSINPQGFFAQAGPLRLFVSAHLIPSDIKWD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PN+ P + + + + VI+ +R+KI+GTR + ++AIG++ +DYLG
Sbjct: 120 PNATPPQFTN-NEDTVIEPGTHVRVKIIGTRTEVGEMWAIGSIKEDYLG 167
>gi|340517390|gb|EGR47634.1| predicted protein [Trichoderma reesei QM6a]
Length = 170
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 110/169 (65%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ ++E + LHP YFG ++E V KL +VEGTC G Y ++I++ I G I
Sbjct: 1 MFFLYNMERRVTLHPSYFGRNMHELVTSKLLKDVEGTCAGSY-YIISIMDTFDISEGKIL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + V YRA+V+RPFKGE +DAVV +N G FA+ GPL F+S H IP+D+++
Sbjct: 60 PGNGLAEFTVGYRAVVWRPFKGETVDAVVYSINPQGFFAQAGPLRLFVSAHLIPSDIKWD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PN+ P + + + + VI+ +R+KI+GTR + ++AIG++ +DYLG
Sbjct: 120 PNATPPQFTN-NEDTVIEPGTHVRVKIIGTRTEVGEMWAIGSIKEDYLG 167
>gi|255717771|ref|XP_002555166.1| KLTH0G02926p [Lachancea thermotolerans]
gi|238936550|emb|CAR24729.1| KLTH0G02926p [Lachancea thermotolerans CBS 6340]
Length = 171
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 112/172 (65%), Gaps = 4/172 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDS--IGAGL 58
MF+ L I LHP +FGPQ+ + ++ KL EVEGTCTGK+G+++ V ++ I G
Sbjct: 1 MFFFKDLSLNITLHPSFFGPQMKQYLRTKLLQEVEGTCTGKFGYILCVLDCENVEIERGR 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
I PG G + VKYRA+V++PFKGEV+D VV+ +G ++GPLS F+S +P D+
Sbjct: 61 ILPGDGSAEFTVKYRAVVWKPFKGEVVDGVVSSCTNLGFEVDVGPLSVFVSPFLMPEDLS 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
+ SNP Y+S E +I + +RLKIVG R + + I+AIG++ +DYLG+
Sbjct: 121 YNSGSNPPSYQS--SEQIITKGSRVRLKIVGARSEVNSIYAIGSIKEDYLGV 170
>gi|363752353|ref|XP_003646393.1| hypothetical protein Ecym_4540 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890028|gb|AET39576.1| hypothetical protein Ecym_4540 [Eremothecium cymbalariae
DBVPG#7215]
Length = 171
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 111/172 (64%), Gaps = 4/172 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIG--AGL 58
MF+ L I LHP YFGP++ E +K KL EVEGTCTGK+G+++ V ++I G
Sbjct: 1 MFFFKDLSLNITLHPSYFGPRMREYLKTKLLQEVEGTCTGKFGYILCVLDCENIEIERGR 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
I P G + VKYRA+V++PFKGEV+D +V+ +G ++GPLS F+S +P D+
Sbjct: 61 ILPTDGSAEFTVKYRAVVWKPFKGEVVDGIVSSCTNLGFEVDVGPLSVFVSPFLMPDDLT 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
F SNP Y+S E +I + +RLKIVG R + + I+AIG++ +DYLG+
Sbjct: 121 FNSGSNPPSYQS--SEQIITKGSRVRLKIVGARSEVNSIYAIGSIKEDYLGV 170
>gi|45198920|ref|NP_985949.1| AFR402Cp [Ashbya gossypii ATCC 10895]
gi|44984949|gb|AAS53773.1| AFR402Cp [Ashbya gossypii ATCC 10895]
gi|374109179|gb|AEY98085.1| FAFR402Cp [Ashbya gossypii FDAG1]
Length = 171
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 111/172 (64%), Gaps = 4/172 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIG--AGL 58
MF+ L I LHP YFGP++ E +K KL EVEGTCTGK+G+++ V ++I G
Sbjct: 1 MFFFKDLSLNITLHPSYFGPRMREYLKTKLLQEVEGTCTGKFGYILCVLDSENIEIERGR 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
I P G + VKYRA+V++PFKGEV+D +V+ +G ++GPLS F+S +P D+
Sbjct: 61 ILPTDGSAEFTVKYRAVVWKPFKGEVVDGIVSSCTNLGFEVDVGPLSVFVSPFLMPEDLT 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
F SNP Y+S E +I + +RLKIVG R + + I+AIG++ +DYLG+
Sbjct: 121 FNSGSNPPSYQS--SEQIITKGSRVRLKIVGARSEVNSIYAIGSIKEDYLGV 170
>gi|119188519|ref|XP_001244866.1| hypothetical protein CIMG_04307 [Coccidioides immitis RS]
Length = 180
Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 77/170 (45%), Positives = 111/170 (65%), Gaps = 2/170 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ LEH + LHP +FG + E + QKL +VEG CTG Y V + T D I G I
Sbjct: 1 MFFIHFLEHVLTLHPSFFGSHVKEYLTQKLLDDVEGICTGDYYIVCVMDTYD-ISEGRII 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G Y + YRAIV++PFKGE +DA+VT V G+FAE+GPL+ F+S H IP ++++
Sbjct: 60 PGSGMAEYTIMYRAIVWKPFKGETVDAIVTSVKNQGIFAEVGPLTVFVSKHLIPPEIKWD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
P++ P Y + + VI++ +R+K++G R D +FAIG++ +DYLGL
Sbjct: 120 PDATPPQYTD-NADQVIEKGTNLRIKLIGLRNDVRNMFAIGSIKEDYLGL 168
>gi|348674301|gb|EGZ14120.1| hypothetical protein PHYSODRAFT_303395 [Phytophthora sojae]
Length = 168
Score = 155 bits (391), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 111/165 (67%), Gaps = 2/165 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTI--DSIGAGL 58
MF+ L ++LLHP +FGP+L++ ++ +L EVEGT GKYG+VI VT + + IG G+
Sbjct: 1 MFFLKQLSRDLLLHPMHFGPKLHDIIRLRLIEEVEGTSMGKYGYVITVTEVRDEDIGKGV 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
IQ GFV + ++YRAI+FRPFK +VLDAVVT VN++G FA++GPL F+S H++PTD+
Sbjct: 61 IQDNSGFVCFNIRYRAILFRPFKNQVLDAVVTVVNQLGFFADVGPLQVFVSRHAMPTDLN 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTL 163
+ + S EV I++ +RLKI+G VD + I + +
Sbjct: 121 NGYDHESNAWISDDREVEIRKGCGVRLKIMGVSVDVTEIVRLSVV 165
>gi|50305083|ref|XP_452500.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641633|emb|CAH01351.1| KLLA0C06787p [Kluyveromyces lactis]
Length = 171
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 109/172 (63%), Gaps = 4/172 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIG--AGL 58
MF+ L I LHP +FGPQ+ + KL EVEGTCTGK+G+++ V ++I G
Sbjct: 1 MFFFKDLSLNITLHPSFFGPQMKRYLMTKLLQEVEGTCTGKFGYILCVLDCENIEIERGR 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
I P G + VKYRA+V++PFKGEVLD +V+ +G E+GPLS F+S +P D+
Sbjct: 61 ILPTDGSAEFTVKYRAVVWKPFKGEVLDGIVSSCTNLGFEVEVGPLSVFVSPFLMPEDLT 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
F SNP Y+S E +I + +RLKIVG R + + I+AIG++ +DYLG+
Sbjct: 121 FNSGSNPPSYQS--SEQIITKGSRVRLKIVGARSEVNSIYAIGSIKEDYLGV 170
>gi|358388804|gb|EHK26397.1| hypothetical protein TRIVIDRAFT_86417 [Trichoderma virens Gv29-8]
Length = 171
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 110/169 (65%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ ++E + LHP YFG +++ V KL +VEGTC G Y ++I++ I G I
Sbjct: 1 MFFLYNMERRVTLHPSYFGRNMHDLVTSKLLKDVEGTCAGSY-YIISIMDTFDISEGRIL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + V YRA+V+RPFKGE +DAVV +N G FA+ GPL F+S H IP+D+++
Sbjct: 60 PGNGLAEFTVGYRAVVWRPFKGETVDAVVYSINPQGFFAQAGPLRLFVSAHLIPSDIKWD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PN+ P + + + + VI+ +R+KI+GTR + ++AIG++ +DYLG
Sbjct: 120 PNATPPQFTN-NEDTVIEPGTHVRVKIIGTRTEVGEMWAIGSIKEDYLG 167
>gi|261197854|ref|XP_002625329.1| RNA polymerase II subunit 7 [Ajellomyces dermatitidis SLH14081]
gi|239595292|gb|EEQ77873.1| RNA polymerase II subunit 7 [Ajellomyces dermatitidis SLH14081]
Length = 169
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 110/169 (65%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ LEH + LHP +FG + E + QKL +VEG CTG Y V + T D I G +
Sbjct: 1 MFFIHFLEHVLTLHPTFFGSHVKEYLTQKLLDDVEGVCTGDYYIVCVMDTYD-ISEGRVL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G Y + YRAIV++PFKGE +DA+VT V G+FAE+G L+ F+S H IP ++++
Sbjct: 60 PGSGLAEYTIMYRAIVWKPFKGETVDAIVTSVKNQGIFAEVGQLTVFVSKHLIPPEIKWD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
P++ P Y +GE VI++ +R+K++G R D +FAIG++ +DYLG
Sbjct: 120 PDATPPQYTD-NGEQVIEKGTNLRIKLIGLRNDVRNMFAIGSIKEDYLG 167
>gi|327305241|ref|XP_003237312.1| RNA polymerase II subunit 7 [Trichophyton rubrum CBS 118892]
gi|326460310|gb|EGD85763.1| RNA polymerase II subunit 7 [Trichophyton rubrum CBS 118892]
Length = 191
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 110/170 (64%), Gaps = 2/170 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ LEH + LHP +FG + E + QKL +VEG CTG Y +++ V + I G I
Sbjct: 1 MFFIHFLEHVLTLHPSFFGSHVKEYLSQKLLDDVEGICTGDY-YIVCVMDMYDISEGKII 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G Y + YRAIV++PFKGE +DA+VT V G+FAE+GPL+ F+S H IP ++++
Sbjct: 60 PGSGLAEYTIVYRAIVWKPFKGETVDAIVTSVKNQGIFAEVGPLTVFVSKHLIPPEIKWD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
P+S P Y + + VI+ +R+K++G R D +FAIG++ +DYLG
Sbjct: 120 PDSTPPQYTD-NADQVIETGTNLRIKLIGLRNDVRNMFAIGSIREDYLGF 168
>gi|303323777|ref|XP_003071880.1| DNA-directed RNA polymerase II, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240111582|gb|EER29735.1| DNA-directed RNA polymerase II, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|320031834|gb|EFW13792.1| RNA polymerase II subunit 7 [Coccidioides posadasii str. Silveira]
gi|392867774|gb|EAS33470.2| RNA polymerase II subunit 7 [Coccidioides immitis RS]
Length = 169
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 110/169 (65%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ LEH + LHP +FG + E + QKL +VEG CTG Y V + T D I G I
Sbjct: 1 MFFIHFLEHVLTLHPSFFGSHVKEYLTQKLLDDVEGICTGDYYIVCVMDTYD-ISEGRII 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G Y + YRAIV++PFKGE +DA+VT V G+FAE+GPL+ F+S H IP ++++
Sbjct: 60 PGSGMAEYTIMYRAIVWKPFKGETVDAIVTSVKNQGIFAEVGPLTVFVSKHLIPPEIKWD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
P++ P Y + + VI++ +R+K++G R D +FAIG++ +DYLG
Sbjct: 120 PDATPPQYTD-NADQVIEKGTNLRIKLIGLRNDVRNMFAIGSIKEDYLG 167
>gi|296805993|ref|XP_002843816.1| DNA-directed RNA polymerase II subunit RPB7 [Arthroderma otae CBS
113480]
gi|238845118|gb|EEQ34780.1| DNA-directed RNA polymerase II subunit RPB7 [Arthroderma otae CBS
113480]
Length = 169
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 111/169 (65%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ LEH + LHP +FG + E + QKL +VEG CTG Y +++ V + I G I
Sbjct: 1 MFFIHFLEHVLTLHPSFFGSHVKEYLTQKLLDDVEGVCTGDY-YIVCVMDMYDISEGKII 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G Y + YRAIV++PFKGE +DA+VT V G+FAE+GPL+ F+S H IP ++++
Sbjct: 60 PGSGLAEYTIVYRAIVWKPFKGETVDAIVTSVKNQGIFAEVGPLTVFVSKHLIPPEIKWD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
P++ P Y + + VI++ +R+K++G R D +FAIG++ +DYLG
Sbjct: 120 PDATPPQYTD-NADQVIEKGTNLRIKLIGLRNDVRNMFAIGSIREDYLG 167
>gi|310790921|gb|EFQ26454.1| RNA polymerase Rpb7-like domain-containing protein [Glomerella
graminicola M1.001]
gi|380484883|emb|CCF39716.1| DNA-directed RNA polymerase II subunit RPB7 [Colletotrichum
higginsianum]
gi|429860547|gb|ELA35279.1| RNA polymerase ii subunit 7 [Colletotrichum gloeosporioides Nara
gc5]
Length = 171
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 110/169 (65%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ ++E + LHP YFG ++E V KL +VEGTC G Y ++I++ I G I
Sbjct: 1 MFFLYNMERRVTLHPSYFGRNMHELVTSKLLKDVEGTCAGSY-YIISIMDTFDISEGRIL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + V YRA+V+RPFKGE +DAVV VN G FA+ GPL F+S H IP+++++
Sbjct: 60 PGSGLAEFTVGYRAVVWRPFKGETVDAVVYSVNHQGFFAQAGPLRLFVSAHLIPSEIKWD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PN+ P + + + + +I+ +R+K++GTR + ++AIG++ +DYLG
Sbjct: 120 PNATPPQFTN-NEDTIIEPGTHVRVKVIGTRTEVGEMWAIGSIKEDYLG 167
>gi|406604823|emb|CCH43698.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 150
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/151 (49%), Positives = 110/151 (72%), Gaps = 6/151 (3%)
Query: 22 LYETVKQKLYSEVEGTCTGKYGFVIAV---TTIDSIGAGLIQPGQGFVVYPVKYRAIVFR 78
+ + ++ KL +EVEG+CTGK+G+++ V +ID IG G I P G + VKYRA+V++
Sbjct: 1 MNQFLRTKLLNEVEGSCTGKFGYIMCVLDCMSID-IGKGKIIPSDGSAEFEVKYRAVVWK 59
Query: 79 PFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQ 138
PFKGEV+D V +QV+K+G F ++GPLS F+S H IP+DM F P+SNP Y+S + VI+
Sbjct: 60 PFKGEVVDGVCSQVSKLGFFVDVGPLSVFVSTHLIPSDMSFNPSSNPPAYQS--DDQVIE 117
Query: 139 EDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
+ +RLKIVGTR D + I+AIG++ +D+LG
Sbjct: 118 KGSRVRLKIVGTRADVNAIYAIGSIKEDFLG 148
>gi|400601274|gb|EJP68917.1| RNA polymerase Rpb7-like domain-containing protein [Beauveria
bassiana ARSEF 2860]
Length = 219
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 108/169 (63%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ ++E + LHP YFG +++ V KL +VEGTC G Y ++I++ I G I
Sbjct: 1 MFFLKNMERRVTLHPSYFGRNMHDLVTSKLLKDVEGTCAGSY-YIISIMDTFDISEGKIL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P G + V YRA+V+RPFKGE +DAVV +N G FA+ GPL F+S H IP+D ++
Sbjct: 60 PSNGLAEFTVGYRAVVWRPFKGETVDAVVYSINPQGFFAQAGPLRLFVSAHLIPSDTKWD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PN+ P + + + + VI+ +R+KI+GTR + ++AIG++ +DYLG
Sbjct: 120 PNATPPQFTN-NEDTVIEPSTHVRVKIIGTRTEVGEMWAIGSIKEDYLG 167
>gi|358395852|gb|EHK45239.1| hypothetical protein TRIATDRAFT_299936 [Trichoderma atroviride IMI
206040]
Length = 171
Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 109/169 (64%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ ++E + LHP YFG +++ V KL +VEGTC G Y ++I++ I G I
Sbjct: 1 MFFLYNMERRVTLHPSYFGRNMHDLVTSKLLKDVEGTCAGSY-YIISIMDTFDISEGRIL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P G + V YRA+V+RPFKGE +DAVV +N G FA+ GPL F+S H IP+D+++
Sbjct: 60 PSNGLAEFTVGYRAVVWRPFKGETVDAVVYSINPQGFFAQAGPLRLFVSAHLIPSDIKWD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PN+ P + + + + VI+ +R+KI+GTR + ++AIG++ +DYLG
Sbjct: 120 PNATPPQFTN-NEDTVIEPGTHVRVKIIGTRTEVGEMWAIGSIKEDYLG 167
>gi|440632114|gb|ELR02033.1| DNA-directed RNA polymerase II subunit G [Geomyces destructans
20631-21]
Length = 171
Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 111/170 (65%), Gaps = 2/170 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ +LE ++ LHP YFG ++E V KL S+VEGTCTG+Y ++I+V ++ G I
Sbjct: 1 MFFLHNLERQVTLHPSYFGKNMHELVTSKLLSDVEGTCTGQY-YIISVMDTFNVSEGRII 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + V+YRA+V+RPFK E +DA+VT VN G GPL F+S I D++F
Sbjct: 60 PGSGLAEFTVRYRAVVWRPFKNETVDAIVTAVNPAGFHCMAGPLEFFVSRELISKDIKFD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PN+ P + + + VI++ ++R+K++G R D ++AIG++ +DYLG+
Sbjct: 120 PNATPWQWTD-NEDQVIEKGAQVRVKLIGLRSDVGSMYAIGSIKEDYLGV 168
>gi|408398876|gb|EKJ78002.1| hypothetical protein FPSE_01790 [Fusarium pseudograminearum CS3096]
Length = 172
Score = 151 bits (382), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 108/169 (63%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ +LE ++ LHP + G ++E V KL +VEGTC G Y F+I++ I G I
Sbjct: 1 MFFLYNLERKVTLHPSFMGRNMHELVTGKLLKDVEGTCAGSY-FIISIMDAFEISEGRIL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + V YRA+V+RPFKGE +DAVV +N G FA GPL F+S H IP D+++
Sbjct: 60 PGLGMAEFTVGYRAVVWRPFKGETVDAVVHSINPQGFFAHAGPLRLFVSAHLIPNDVKWD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PN+ P + + + + VI+ +R+KI+GTR + ++AIG++ +DYLG
Sbjct: 120 PNATPPQFTN-NEDTVIEPQTHVRVKIIGTRTEVGEMWAIGSIKEDYLG 167
>gi|119484588|ref|XP_001262073.1| RNA polymerase II subunit 7 [Neosartorya fischeri NRRL 181]
gi|119410229|gb|EAW20176.1| RNA polymerase II subunit 7 [Neosartorya fischeri NRRL 181]
Length = 167
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 107/169 (63%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ I LHP YFGP + E + +L E EG CTG + FVI V + IG G +
Sbjct: 1 MFFLKEETKVISLHPSYFGPNMREYLINRLNEEEEGRCTGDH-FVICVMDMVDIGEGRVL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G Y +KYRAI+++PF+GE +DA+VT V G+F GPLS FI+ +IP+D+++
Sbjct: 60 PGSGQAEYTIKYRAIIWKPFRGETVDAIVTSVKPTGIFTLAGPLSVFIARKNIPSDIKWE 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PN+ P Y H + VI++ +RLKI+G + D + I AIGT+ +DYLG
Sbjct: 120 PNTVPPQYTD-HADQVIEKGTSLRLKILGVKPDVAAINAIGTIKEDYLG 167
>gi|121719878|ref|XP_001276637.1| RNA polymerase II subunit 7 [Aspergillus clavatus NRRL 1]
gi|119404849|gb|EAW15211.1| RNA polymerase II subunit 7 [Aspergillus clavatus NRRL 1]
Length = 169
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 107/169 (63%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ I LHP YFGP + E + +L E EG CTG + FVI V + IG G +
Sbjct: 1 MFFLKEETKVISLHPSYFGPNVREYLINRLNEEEEGRCTGDH-FVICVMDMVDIGEGRVL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G Y +KYRAI+++PF+GE +DA+VT V G+F GPLS FI+ +IP+D+++
Sbjct: 60 PGSGSAEYTIKYRAIIWKPFRGETVDAIVTSVKPTGIFTLAGPLSVFIARKNIPSDIKWE 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PN+ P Y H + VI++ +RLKI+G + D + I AIGT+ +DYLG
Sbjct: 120 PNTVPPQYTD-HADQVIEKGTSLRLKILGVKPDVAAINAIGTIKEDYLG 167
>gi|302414828|ref|XP_003005246.1| DNA-directed RNA polymerase II subunit RPB7 [Verticillium
albo-atrum VaMs.102]
gi|261356315|gb|EEY18743.1| DNA-directed RNA polymerase II subunit RPB7 [Verticillium
albo-atrum VaMs.102]
Length = 177
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 109/169 (64%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ ++E + LHP YFG +++ V KL +VEGT G Y +VI++ I G I
Sbjct: 1 MFFLKNMERRVTLHPSYFGRNMHDLVTSKLLKDVEGTFAGSY-YVISIMDTFDISEGKIL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + V YRA+V+RPFKGE +DAVV VN G FA+ GPL F+S H IP+++++
Sbjct: 60 PGSGLAEFNVGYRAVVWRPFKGETVDAVVYSVNHQGFFAQAGPLRLFVSAHLIPSEIKWD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PN+ P + + + +I+ +R+K++GTR + S ++AIG++ +DYLG
Sbjct: 120 PNATPPQFTD-NDDTIIEPGTHVRVKVIGTRAEVSEMWAIGSIKEDYLG 167
>gi|145253060|ref|XP_001398043.1| DNA-directed RNA polymerase II subunit rpb7 [Aspergillus niger CBS
513.88]
gi|134083601|emb|CAL00516.1| unnamed protein product [Aspergillus niger]
gi|350633119|gb|EHA21485.1| DNA-directed RNA polymerase II [Aspergillus niger ATCC 1015]
gi|358372658|dbj|GAA89260.1| RNA polymerase II subunit 7 [Aspergillus kawachii IFO 4308]
Length = 167
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 107/169 (63%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ I LHP YFGP + E + +L E EG CTG + FVI V + IG G +
Sbjct: 1 MFFLKEEVKVITLHPSYFGPNMREYLINRLNEEEEGRCTGDH-FVICVMDMVDIGEGRVL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G Y +KYRAI+++PF+GE +DA+VT V G+F GPLS FI+ +IP+D+++
Sbjct: 60 PGSGQAEYTIKYRAIIWKPFRGETVDAIVTSVKPTGIFTLAGPLSVFIARKNIPSDIKWE 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PN+ P Y H + VI++ +RLKI+G + D + I AIGT+ +DYLG
Sbjct: 120 PNTVPPQYTD-HADQVIEKGTSLRLKILGVKPDVAAINAIGTIKEDYLG 167
>gi|67522128|ref|XP_659125.1| hypothetical protein AN1521.2 [Aspergillus nidulans FGSC A4]
gi|40744621|gb|EAA63777.1| hypothetical protein AN1521.2 [Aspergillus nidulans FGSC A4]
gi|259486847|tpe|CBF85037.1| TPA: RNA polymerase II subunit 7 (AFU_orthologue; AFUA_8G05300)
[Aspergillus nidulans FGSC A4]
Length = 169
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 107/169 (63%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ I LHP YFGP + E + +L E EG CTG + FVI V + IG G +
Sbjct: 1 MFFLKEETKVITLHPSYFGPNVREYLINRLNEEEEGRCTGDH-FVICVMDMVDIGEGRVL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G Y +KYRAI+++PF+GE +DA+VT V G+F GPLS FI+ +IP+D+++
Sbjct: 60 PGNGQAEYTIKYRAIIWKPFRGETVDALVTSVKPTGIFTLAGPLSVFIARKNIPSDIRWE 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PN+ P Y H + VI++ +RLKI+G + D + I AIGT+ +DYLG
Sbjct: 120 PNTVPPQYTD-HADQVIEKGTSLRLKILGVKPDVAAINAIGTIKEDYLG 167
>gi|340992705|gb|EGS23260.1| hypothetical protein CTHT_0009270 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 171
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 109/169 (64%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ +LE + LHP YFG ++E V KL +VEGTC G Y +VIA+ I G I
Sbjct: 1 MFFLHNLERRVTLHPSYFGKNMHELVTTKLVKDVEGTCAGDY-YVIAIMDTFDISEGRIL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + V YRA+V+RPFK EV+DA+VT VN G FA+ GPL F+S H IP ++++
Sbjct: 60 PGSGLAEFTVGYRAVVWRPFKNEVIDAIVTTVNPHGFFAQAGPLRLFVSTHLIPDEIKYD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
++ P + + + ++VI++ +R+KI+G R + ++AIGT+ D+LG
Sbjct: 120 ASATPPQFTN-NADIVIEQGTHVRVKIIGLRTEVGEMWAIGTINGDFLG 167
>gi|346979502|gb|EGY22954.1| DNA-directed RNA polymerase II subunit RPB7 [Verticillium dahliae
VdLs.17]
Length = 171
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 109/169 (64%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ ++E + LHP YFG +++ V KL +VEGT G Y +VI++ I G I
Sbjct: 1 MFFLKNMERRVTLHPSYFGRNMHDLVTSKLLKDVEGTFAGSY-YVISIMDTFDISEGKIL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + V YRA+V+RPFKGE +DAVV VN G FA+ GPL F+S H IP+++++
Sbjct: 60 PGSGLAEFNVGYRAVVWRPFKGETVDAVVYSVNHQGFFAQAGPLRLFVSAHLIPSEIKWD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PN+ P + + + +I+ +R+K++GTR + S ++AIG++ +DYLG
Sbjct: 120 PNATPPQFTD-NDDTIIEPGTHVRVKVIGTRAEVSEMWAIGSIKEDYLG 167
>gi|315046352|ref|XP_003172551.1| DNA-directed RNA polymerase II subunit RPB7 [Arthroderma gypseum
CBS 118893]
gi|311342937|gb|EFR02140.1| DNA-directed RNA polymerase II subunit RPB7 [Arthroderma gypseum
CBS 118893]
Length = 175
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 111/175 (63%), Gaps = 8/175 (4%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ LEH + LHP +FG + E + QKL +VEG CTG Y +++ V + I G I
Sbjct: 1 MFFIHFLEHVLTLHPSFFGSHVKEYLSQKLLDDVEGVCTGDY-YIVCVMDMYDISEGRII 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVL------DAVVTQVNKVGMFAEIGPLSCFISHHSIP 114
PG G Y + YRAIV++PFKGE L DA+VT V G+FAE+GPL+ F+S H IP
Sbjct: 60 PGSGLAEYTIVYRAIVWKPFKGETLTAGEKVDAIVTSVKNQGIFAEVGPLTVFVSKHLIP 119
Query: 115 TDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
++++ P++ P Y + + VI++ +R+K++G R D +FAIG++ +DYLG
Sbjct: 120 PEIKWDPDATPPQYTD-NADQVIEKGTNLRIKLIGLRNDVRNMFAIGSIREDYLG 173
>gi|38567178|emb|CAE76471.1| probable DNA-directed RNA polymerase II chain Rpb7 [Neurospora
crassa]
Length = 167
Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 108/169 (63%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ +LE + LHP YFG ++E V KL +VEGTC G Y ++IA+ + G I
Sbjct: 1 MFFLHNLERRVTLHPSYFGRNMHELVTTKLVKDVEGTCAGDY-YIIAIMDAFDVSEGRIL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + VKYRA+V+RPFKGEV+DA+V +N G F + GPLS F+S H +P ++ F
Sbjct: 60 PGNGLAEFTVKYRAVVWRPFKGEVVDAIVFSINPHGFFCQAGPLSIFVSSHLMPEEIHFD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PN+ P + + + ++VI+ +R+KI G R + ++AIG++ D+LG
Sbjct: 120 PNATPPQFTN-NADMVIEPGTHVRVKIGGLRTELGEMYAIGSINGDFLG 167
>gi|336272519|ref|XP_003351016.1| hypothetical protein SMAC_04320 [Sordaria macrospora k-hell]
gi|336464760|gb|EGO53000.1| hypothetical protein NEUTE1DRAFT_150414 [Neurospora tetrasperma
FGSC 2508]
gi|350296863|gb|EGZ77840.1| putative DNA-directed RNA polymerase II chain Rpb7 [Neurospora
tetrasperma FGSC 2509]
gi|380090783|emb|CCC04953.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 171
Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 108/169 (63%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ +LE + LHP YFG ++E V KL +VEGTC G Y ++IA+ + G I
Sbjct: 1 MFFLHNLERRVTLHPSYFGRNMHELVTTKLVKDVEGTCAGDY-YIIAIMDAFDVSEGRIL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + VKYRA+V+RPFKGEV+DA+V +N G F + GPLS F+S H +P ++ F
Sbjct: 60 PGNGLAEFTVKYRAVVWRPFKGEVVDAIVFSINPHGFFCQAGPLSIFVSSHLMPEEIHFD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PN+ P + + + ++VI+ +R+KI G R + ++AIG++ D+LG
Sbjct: 120 PNATPPQFTN-NADMVIEPGTHVRVKIGGLRTELGEMYAIGSINGDFLG 167
>gi|83765518|dbj|BAE55661.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391864670|gb|EIT73964.1| DNA-directed RNA polymerase subunit E' [Aspergillus oryzae 3.042]
Length = 169
Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 106/169 (62%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ I LHP YFGP + E + +L E EG CTG + FVI V + IG G +
Sbjct: 1 MFFLKEETKVITLHPSYFGPNVREYLINRLNEEEEGRCTGDH-FVICVMDMVDIGEGRVL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P G Y +KYRAI+++PF+GE +DA+VT V G+F GPLS FI+ +IP+D+++
Sbjct: 60 PSSGQAEYTIKYRAIIWKPFRGETVDAIVTSVKPTGIFTLAGPLSVFIARKNIPSDIKWE 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PN+ P Y H + VI++ +RLKI+G + D + I AIGT+ +DYLG
Sbjct: 120 PNTVPPQYTD-HADQVIEKGTSLRLKILGVKPDVAAINAIGTIKEDYLG 167
>gi|238483091|ref|XP_002372784.1| RNA polymerase II subunit 7 [Aspergillus flavus NRRL3357]
gi|317139645|ref|XP_001817663.2| DNA-directed RNA polymerase II subunit rpb7 [Aspergillus oryzae
RIB40]
gi|220700834|gb|EED57172.1| RNA polymerase II subunit 7 [Aspergillus flavus NRRL3357]
Length = 191
Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 106/169 (62%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ I LHP YFGP + E + +L E EG CTG + FVI V + IG G +
Sbjct: 1 MFFLKEETKVITLHPSYFGPNVREYLINRLNEEEEGRCTGDH-FVICVMDMVDIGEGRVL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P G Y +KYRAI+++PF+GE +DA+VT V G+F GPLS FI+ +IP+D+++
Sbjct: 60 PSSGQAEYTIKYRAIIWKPFRGETVDAIVTSVKPTGIFTLAGPLSVFIARKNIPSDIKWE 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PN+ P Y H + VI++ +RLKI+G + D + I AIGT+ +DYLG
Sbjct: 120 PNTVPPQYTD-HADQVIEKGTSLRLKILGVKPDVAAINAIGTIKEDYLG 167
>gi|116207108|ref|XP_001229363.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88183444|gb|EAQ90912.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 202
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 108/169 (63%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ +LE + LHP YFG ++E V KL +VEGTC G Y ++IA+ + G I
Sbjct: 1 MFFLHNLERRVTLHPSYFGRNMHELVTTKLVKDVEGTCAGDY-YIIAIMDTFDVSEGRIL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + V YRA+V+RPFKGEV+DA+ VN G FA+ GPL F+S H +P ++Q+
Sbjct: 60 PGSGLAEFTVGYRAVVWRPFKGEVIDAITQTVNPHGFFAQAGPLRLFVSSHLMPDEIQYD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
++ P + + + ++VI++ +R+KI+G R + ++AIG++ D+LG
Sbjct: 120 ASATPAQFTN-NADIVIEQGTHVRVKIIGLRTEVGEMWAIGSINGDFLG 167
>gi|255931335|ref|XP_002557224.1| Pc12g03390 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581843|emb|CAP79966.1| Pc12g03390 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 167
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 107/169 (63%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ I +HP YFGP + E + +L E EG CTG + FVI V + IG G +
Sbjct: 1 MFFLKEETKVISMHPSYFGPNMREYLIGRLNEEEEGRCTGDH-FVICVMDMVDIGEGRVM 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G Y ++YRAI+++PF+GE +DA+VT V G+F GPLS FI+ +IP+D+++
Sbjct: 60 PGIGQAEYTIRYRAIIWKPFRGETVDAIVTSVKPTGIFTLAGPLSVFIARKNIPSDIKWE 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PN+ P Y H + VI++ +RLKI+G + D + I AIGT+ +DYLG
Sbjct: 120 PNTVPPQYTD-HADQVIEKGTSLRLKILGVKPDVAAINAIGTIKEDYLG 167
>gi|425765811|gb|EKV04459.1| RNA polymerase II subunit 7 [Penicillium digitatum PHI26]
gi|425783900|gb|EKV21717.1| RNA polymerase II subunit 7 [Penicillium digitatum Pd1]
Length = 169
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 107/169 (63%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ I +HP YFGP + E + +L E EG CTG + FVI V + IG G +
Sbjct: 1 MFFLKEETKVISMHPSYFGPNMREYLIGRLNEEEEGRCTGDH-FVICVMDMVDIGEGRVM 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G Y ++YRAI+++PF+GE +DA+VT V G+F GPLS FI+ +IP+D+++
Sbjct: 60 PGIGQAEYTIRYRAIIWKPFRGETVDAIVTSVKPTGIFTLAGPLSVFIARKNIPSDIKWE 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PN+ P Y H + VI++ +RLKI+G + D + I AIGT+ +DYLG
Sbjct: 120 PNTVPPQYTD-HADQVIEKGTSLRLKILGVKPDVAAINAIGTIKEDYLG 167
>gi|367020616|ref|XP_003659593.1| hypothetical protein MYCTH_2123230 [Myceliophthora thermophila ATCC
42464]
gi|347006860|gb|AEO54348.1| hypothetical protein MYCTH_2123230 [Myceliophthora thermophila ATCC
42464]
Length = 171
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 108/169 (63%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ +LE + LHP YFG ++E V KL +VEGTC G Y ++IA+ + G I
Sbjct: 1 MFFLHNLERRVTLHPSYFGRNMHELVTTKLVKDVEGTCAGDY-YIIAIMDTFDVSEGRIL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + V YRA+V+RPFKGEV+DA+ VN G FA+ GPL F+S H +P ++Q+
Sbjct: 60 PGSGLAEFTVGYRAVVWRPFKGEVIDAITQTVNPHGFFAQAGPLRLFVSSHLMPDEIQYD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
++ P + + + ++VI++ +R++I+G R + ++AIG++ D+LG
Sbjct: 120 ASATPAQFTN-NADIVIEQGTHVRVRIIGLRTEVGEMWAIGSINGDFLG 167
>gi|242820484|ref|XP_002487519.1| RNA polymerase II subunit 7 [Talaromyces stipitatus ATCC 10500]
gi|218713984|gb|EED13408.1| RNA polymerase II subunit 7 [Talaromyces stipitatus ATCC 10500]
Length = 169
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 105/169 (62%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ + LHP +FGP + E + +L E EG CTG + FVI V + IG G +
Sbjct: 1 MFFLKEETKVVTLHPSFFGPNVKEYLVNRLNEEEEGRCTGDH-FVICVMDMVDIGEGRVI 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G Y +KYRAI+++PF+GE +DA+VT V G+F GPLS FI+ +IP+D+++
Sbjct: 60 PGSGHAEYTIKYRAIIWKPFRGETVDAIVTSVKPTGIFTLAGPLSVFIARKNIPSDIKWE 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
P + P Y H + VI+ +RLKI+G + D S I AIGT+ +DYLG
Sbjct: 120 PGTVPPQYTD-HADQVIERGTSLRLKILGVKPDVSAINAIGTIKEDYLG 167
>gi|115396608|ref|XP_001213943.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Aspergillus
terreus NIH2624]
gi|114193512|gb|EAU35212.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Aspergillus
terreus NIH2624]
Length = 174
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ I LHP YFGP + E + +L E EG CTG + FVI V + IG G +
Sbjct: 1 MFFLKEETKVISLHPSYFGPNVREYLINRLNEEEEGRCTGDH-FVICVMDMVDIGEGRVL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P G Y +KYRAI+++PF+GE +DA+VT V G+F GPL+ FI+ +IP+D+++
Sbjct: 60 PSSGHAEYTIKYRAIIWKPFRGETVDAIVTSVKPTGIFTLAGPLAVFIARKNIPSDIKWE 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PN+ P Y H + VI++ +RLKI+G + D + I AIGT+ +DYLG
Sbjct: 120 PNTVPPQYTD-HADQVIEKGTSLRLKILGVKPDVAAINAIGTIKEDYLG 167
>gi|212545789|ref|XP_002153048.1| RNA polymerase II subunit 7 [Talaromyces marneffei ATCC 18224]
gi|210064568|gb|EEA18663.1| RNA polymerase II subunit 7 [Talaromyces marneffei ATCC 18224]
Length = 169
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 105/169 (62%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ + LHP +FGP + E + +L E EG CTG + FVI V + IG G +
Sbjct: 1 MFFLKEETKVVTLHPSFFGPNVKEYLINRLNEEEEGRCTGDH-FVICVMDMVDIGDGRVI 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G Y +KYRAI+++PF+GE +DA+VT V G+F GPLS FI+ +IP+D+++
Sbjct: 60 PGSGHAEYTIKYRAIIWKPFRGETVDAIVTSVKPTGIFTLAGPLSVFIARKNIPSDIKWE 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
P + P Y H + VI+ +RLKI+G + D S I AIGT+ +DYLG
Sbjct: 120 PGTVPPQYTD-HADQVIERGTSLRLKILGVKPDVSAINAIGTIKEDYLG 167
>gi|219118585|ref|XP_002180062.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408319|gb|EEC48253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 181
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/172 (47%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTI--DSIGAGL 58
MFY +L+HEI+L P +FGP+L T+ + L VEG YG+V+ V + D I +G+
Sbjct: 1 MFYVKTLDHEIVLEPVHFGPKLKATIVRLLKEHVEGLALANYGYVVNVIEVPEDQIRSGI 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
I+ G VV+ VKY A++ RPF EVLDAVVTQ N +G FA GPL F+S HS+P DM
Sbjct: 61 IEYDTGNVVFTVKYTALLLRPFLNEVLDAVVTQCNALGFFAFCGPLRIFVSKHSMPEDMF 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
N + S EVVI +RLKI G V+ I AIGT+ D+YLGL
Sbjct: 121 HGFNHEQDAWVSDDKEVVIAAGSGVRLKIKGRTVEQGNITAIGTIKDNYLGL 172
>gi|260944176|ref|XP_002616386.1| hypothetical protein CLUG_03627 [Clavispora lusitaniae ATCC 42720]
gi|238850035|gb|EEQ39499.1| hypothetical protein CLUG_03627 [Clavispora lusitaniae ATCC 42720]
Length = 141
Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 102/139 (73%), Gaps = 6/139 (4%)
Query: 34 VEGTCTGKYGFVIAV---TTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVT 90
++GTCTG++G+++ V ID +G G I PG G + VKYRA+V++PFKGEV+DAVVT
Sbjct: 2 LKGTCTGQFGYIVCVLDCMNID-VGRGRIIPGSGMAEFEVKYRAVVWKPFKGEVVDAVVT 60
Query: 91 QVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGT 150
VNK+G FA++GPLS F+S H I +DM+F P++NP Y V + I++ +RLKIVGT
Sbjct: 61 TVNKMGFFADVGPLSVFVSTHLISSDMKFNPSANPPAY--VSPDETIEKGSRVRLKIVGT 118
Query: 151 RVDASGIFAIGTLMDDYLG 169
R D + I+AIG++ +DYLG
Sbjct: 119 RTDVNEIYAIGSIKEDYLG 137
>gi|402086572|gb|EJT81470.1| hypothetical protein GGTG_01448 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 170
Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 105/169 (62%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ +LE + LHP YFG + E V +L +VEG+C G Y ++I++ I G I
Sbjct: 1 MFFLYNLERRVTLHPSYFGKNMQELVTTRLLQDVEGSCQGNY-YIISIMDTFDISPGKIL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + V YRA+V+RPFKGE +DA+V VN G FA GPL F+S H IP +++
Sbjct: 60 PGNGLAEFTVGYRAVVWRPFKGETVDAIVDSVNPHGFFANAGPLRLFVSEHMIPHHVKYD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PN++P + + ++ +R+KIVGTR + + ++AIGT+ +D+LG
Sbjct: 120 PNASPPQFTDKE-DYRVEPGTHVRVKIVGTRSEVTNMWAIGTVNEDFLG 167
>gi|303276905|ref|XP_003057746.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460403|gb|EEH57697.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 174
Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 107/171 (62%), Gaps = 3/171 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLI- 59
MF+HI E I+L P YFG ++ E ++ ++ EVEG+CTG++G+++ VT I I G+I
Sbjct: 1 MFFHIEQEKNIVLEPMYFGKRMREMIESRVRQEVEGSCTGRHGYIVMVTNIVHISEGMIT 60
Query: 60 QPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQF 119
G + VKY AI FRPFK EVLD VV QV K G FAE GPL F+S+ +P +M F
Sbjct: 61 DDGTARAKFHVKYSAIAFRPFKNEVLDCVVVQVTKFGFFAEAGPLKLFVSNQLVPEEMVF 120
Query: 120 -CPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
+ N K+ +++ D E+R+K+VG R+D + IF + T+ + YLG
Sbjct: 121 ESVDENAYVDKTDISHRIVK-DIEVRVKVVGLRIDHNEIFCVATMKEPYLG 170
>gi|46108676|ref|XP_381396.1| hypothetical protein FG01220.1 [Gibberella zeae PH-1]
Length = 248
Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 108/175 (61%), Gaps = 8/175 (4%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ +LE ++ LHP + G ++E V KL +VEGTC G Y F+I++ I G I
Sbjct: 1 MFFLYNLERKVTLHPSFMGRNMHELVTGKLLKDVEGTCAGSY-FIISIMDAFEISEGRIL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEV------LDAVVTQVNKVGMFAEIGPLSCFISHHSIP 114
PG G + V YRA+V+RPFKGE +DAVV +N G FA GPL F+S H IP
Sbjct: 60 PGLGMAEFTVGYRAVVWRPFKGETESDLTQVDAVVHSINPQGFFAHAGPLRLFVSAHLIP 119
Query: 115 TDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
D+++ PN+ P + + + + VI+ +R+KI+GTR + ++AIG++ +DYLG
Sbjct: 120 NDVKWDPNATPPQFTN-NEDTVIEPQTHVRVKIIGTRTEVGEMWAIGSIKEDYLG 173
>gi|367042626|ref|XP_003651693.1| hypothetical protein THITE_2112268 [Thielavia terrestris NRRL 8126]
gi|346998955|gb|AEO65357.1| hypothetical protein THITE_2112268 [Thielavia terrestris NRRL 8126]
Length = 167
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 106/169 (62%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ +LE + LHP YFG ++E V KL +VEGTC G Y ++IA+ + G I
Sbjct: 1 MFFLHNLERRVTLHPSYFGRNMHELVTTKLVKDVEGTCAGDY-YIIAIMDTFDVSEGRIL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + V YRA+V+RPFKGEV+DA+ VN G FA+ GPL F+S +P ++Q+
Sbjct: 60 PGSGLAEFTVGYRAVVWRPFKGEVIDAITQTVNPHGFFAQAGPLRLFVSSQLMPDEIQYD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
++ P + + + ++VI+ +R+KI+G R + ++AIG++ D+LG
Sbjct: 120 ASATPAQFTN-NADIVIEHGTHVRVKIIGLRTEVGEMWAIGSINGDFLG 167
>gi|366988751|ref|XP_003674143.1| hypothetical protein NCAS_0A12040 [Naumovozyma castellii CBS 4309]
gi|342300006|emb|CCC67762.1| hypothetical protein NCAS_0A12040 [Naumovozyma castellii CBS 4309]
Length = 171
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/171 (43%), Positives = 104/171 (60%), Gaps = 4/171 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIG--AGL 58
MF+ L I LHP +FGP++ + +K KL EVEG+CTGK+G+++ V D I G
Sbjct: 1 MFFIKDLSLNITLHPSFFGPRMKQFLKTKLLQEVEGSCTGKFGYILCVLDYDKIEIERGR 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
I P G + VKYRAIVF+PFKGEV+D V ++ G ++GP+ F++ H +P+D+
Sbjct: 61 ILPTDGSAEFQVKYRAIVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPSDLN 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
F SNP Y+S E VI IR+KI G S I AIG++ +DYLG
Sbjct: 121 FNAGSNPPSYQS--SEDVITIKSRIRVKIEGCISQVSSIHAIGSIKEDYLG 169
>gi|444319100|ref|XP_004180207.1| hypothetical protein TBLA_0D01800 [Tetrapisispora blattae CBS 6284]
gi|387513249|emb|CCH60688.1| hypothetical protein TBLA_0D01800 [Tetrapisispora blattae CBS 6284]
Length = 171
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 104/171 (60%), Gaps = 4/171 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIG--AGL 58
MF+ L I LHP +FGP++ + +K KL EVEG+CTGK+G+++ V D I G
Sbjct: 1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLQEVEGSCTGKFGYILCVLDYDKIDIERGR 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
I P G + V+YRA+VF+PFKGEV+D V ++ G ++GP+ F++ H +P D+Q
Sbjct: 61 IIPTDGSAEFTVRYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLQ 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
F SNP Y+S E VI IR+KI G S I AIG++ +DYLG
Sbjct: 121 FNAGSNPPSYQS--SEDVITIKSRIRVKIEGCISQVSSIHAIGSIKEDYLG 169
>gi|365981979|ref|XP_003667823.1| hypothetical protein NDAI_0A04230 [Naumovozyma dairenensis CBS 421]
gi|343766589|emb|CCD22580.1| hypothetical protein NDAI_0A04230 [Naumovozyma dairenensis CBS 421]
Length = 171
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/171 (43%), Positives = 104/171 (60%), Gaps = 4/171 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIG--AGL 58
MF+ L I LHP +FGP++ + +K KL EVEG+CTGK+G+++ V D I G
Sbjct: 1 MFFIKDLSLNITLHPSFFGPRMKQFLKTKLLQEVEGSCTGKFGYILCVLDYDKIEIERGR 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
I P G + VKYRAIVF+PFKGEV+D V ++ G ++GP+ F++ H +P+D+
Sbjct: 61 ILPTDGSAEFNVKYRAIVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPSDLM 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
F SNP Y+S E VI IR+KI G S I AIG++ +DYLG
Sbjct: 121 FNAGSNPPSYQS--SEDVITIKSRIRVKIEGCISQVSSIHAIGSIKEDYLG 169
>gi|110590860|pdb|2B8K|G Chain G, 12-Subunit Rna Polymerase Ii
Length = 215
Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 104/171 (60%), Gaps = 4/171 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIG--AGL 58
MF+ L I LHP +FGP++ + +K KL EVEG+CTGK+G+++ V D+I G
Sbjct: 1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGR 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
I P G + VKYRA+VF+PFKGEV+D V ++ G ++GP+ F++ H +P D+
Sbjct: 61 ILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLT 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
F SNP Y+S E VI IR+KI G S I AIG++ +DYLG
Sbjct: 121 FNAGSNPPSYQS--SEDVITIKSRIRVKIEGCISQVSSIHAIGSIKEDYLG 169
>gi|254581916|ref|XP_002496943.1| ZYRO0D11726p [Zygosaccharomyces rouxii]
gi|238939835|emb|CAR28010.1| ZYRO0D11726p [Zygosaccharomyces rouxii]
Length = 171
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 75/171 (43%), Positives = 103/171 (60%), Gaps = 4/171 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIG--AGL 58
MF+ L I LHP YFGP++ + +K KL EVEG+CTGK+G+++ V D I G
Sbjct: 1 MFFIKDLSLNITLHPSYFGPRMKDFLKTKLLQEVEGSCTGKFGYILCVLDYDRIDIERGR 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
I P G + V+YRAIVF+PFKGEV+D V ++ G ++GP+ F++ H +P D+
Sbjct: 61 ILPTDGSAEFTVRYRAIVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLM 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
F SNP Y+S E VI IR+KI G S I AIG++ +DYLG
Sbjct: 121 FNAGSNPPSYQS--SEDVITIKSRIRVKIEGCISQVSSIHAIGSIKEDYLG 169
>gi|412992538|emb|CCO18518.1| predicted protein [Bathycoccus prasinos]
Length = 149
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 97/138 (70%), Gaps = 3/138 (2%)
Query: 34 VEGTCTGKYGFVIAVTTIDSIGAGLI-QPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQV 92
+EGTC+G+YGF++ +T I+++ G+I G + V+Y + +RPFK EVLDAVVTQV
Sbjct: 1 MEGTCSGRYGFIVCITHIENVSEGIITDDGTARAKFAVEYDCVAYRPFKNEVLDAVVTQV 60
Query: 93 NKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRV 152
NK G FAE GPL F+S+ +P D+++ + N CYKS G++ I D E+R+KIVG R+
Sbjct: 61 NKFGFFAEAGPLQLFVSNSLVPDDVKYVTDEN--CYKSDDGQITIGVDCEVRVKIVGMRI 118
Query: 153 DASGIFAIGTLMDDYLGL 170
DA+ IF I T+ +DYLGL
Sbjct: 119 DANDIFCIATIKEDYLGL 136
>gi|410080111|ref|XP_003957636.1| hypothetical protein KAFR_0E03500 [Kazachstania africana CBS 2517]
gi|372464222|emb|CCF58501.1| hypothetical protein KAFR_0E03500 [Kazachstania africana CBS 2517]
Length = 171
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 103/171 (60%), Gaps = 4/171 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIG--AGL 58
MF+ L I LHP +FGP++ + +K KL EVEG+CTGK+G+++ V D I G
Sbjct: 1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLQEVEGSCTGKFGYILCVLNYDQIEIERGR 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
I P G + VKYRA+VF+PFKGEV+D V ++ G ++GP+ F++ H +P D+
Sbjct: 61 ILPTDGSAEFKVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLT 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
F SNP Y+S E VI IR+KI G S I AIG++ +DYLG
Sbjct: 121 FNAGSNPPSYQS--SEDVITIKSRIRVKIEGCISQVSSIHAIGSIKEDYLG 169
>gi|90018178|gb|ABD83902.1| DNA directed RNA polymerase II polypeptide G [Ictalurus punctatus]
Length = 86
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 65/83 (78%), Positives = 77/83 (92%)
Query: 67 VYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPV 126
+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F PNSNP
Sbjct: 4 LYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPP 63
Query: 127 CYKSVHGEVVIQEDDEIRLKIVG 149
CYK+V +VVIQ++DEIRLKIVG
Sbjct: 64 CYKTVDEDVVIQQEDEIRLKIVG 86
>gi|401838577|gb|EJT42119.1| RPB7-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 171
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 104/171 (60%), Gaps = 4/171 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIG--AGL 58
MF+ L I LHP +FGP++ + +K KL EVEG+CTGK+G+++ V D+I G
Sbjct: 1 MFFIKDLSLNITLHPSFFGPRMKQYLKAKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGR 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
I P G + VKYRA+VF+PFKGEV+D V ++ G ++GP+ F++ H +P D+
Sbjct: 61 ILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLT 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
F SNP Y+S E VI IR+KI G S I AIG++ +DYLG
Sbjct: 121 FNAGSNPPSYQS--SEDVITIKSRIRVKIEGCISQVSSIHAIGSIKEDYLG 169
>gi|401624138|gb|EJS42207.1| rpb7p [Saccharomyces arboricola H-6]
Length = 171
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 104/171 (60%), Gaps = 4/171 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIG--AGL 58
MF+ L I LHP +FGP++ + +K KL EVEG+CTGK+G+++ V D+I G
Sbjct: 1 MFFIKDLSLNITLHPSFFGPRMKQYLKAKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGR 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
I P G + VKYRA+VF+PFKGEV+D V ++ G ++GP+ F++ H +P D+
Sbjct: 61 ILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLA 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
F SNP Y+S E VI IR+KI G S I AIG++ +DYLG
Sbjct: 121 FNAGSNPPSYQS--SEDVITIKSRIRVKIEGCISQVSSIHAIGSIKEDYLG 169
>gi|398366567|ref|NP_010692.3| Rpb7p [Saccharomyces cerevisiae S288c]
gi|464672|sp|P34087.1|RPB7_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7; AltName: Full=B16
gi|30749743|pdb|1NT9|G Chain G, Complete 12-Subunit Rna Polymerase Ii
gi|34810559|pdb|1PQV|G Chain G, Rna Polymerase Ii-Tfiis Complex
gi|58177170|pdb|1WCM|G Chain G, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679450|pdb|1Y1W|G Chain G, Complete Rna Polymerase Ii Elongation Complex
gi|61679467|pdb|1Y77|G Chain G, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679508|pdb|1Y1V|G Chain G, Refined Rna Polymerase Ii-tfiis Complex
gi|61679521|pdb|1Y1Y|G Chain G, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|61679566|pdb|1Y14|B Chain B, Crystal Structure Of Yeast Subcomplex Of Rpb4 And Rpb7
gi|61679568|pdb|1Y14|D Chain D, Crystal Structure Of Yeast Subcomplex Of Rpb4 And Rpb7
gi|83754249|pdb|2B63|G Chain G, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|134104680|pdb|2JA5|G Chain G, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104695|pdb|2JA6|G Chain G, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104716|pdb|2JA7|G Chain G, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104728|pdb|2JA7|S Chain S, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104740|pdb|2JA8|G Chain G, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|160877779|pdb|2R7Z|G Chain G, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172233|pdb|2R92|G Chain G, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172246|pdb|2R93|G Chain G, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613468|pdb|2VUM|G Chain G, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|224983596|pdb|3FKI|G Chain G, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|240104517|pdb|3H3V|H Chain H, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839447|pdb|3HOU|G Chain G, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839462|pdb|3HOU|S Chain S, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839477|pdb|3HOV|G Chain G, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839492|pdb|3HOW|G Chain G, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839507|pdb|3HOX|G Chain G, Complete Rna Polymerase Ii Elongation Complex V
gi|254839522|pdb|3HOY|G Chain G, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839537|pdb|3HOZ|G Chain G, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471952|pdb|3I4M|G Chain G, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471967|pdb|3I4N|G Chain G, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618771|pdb|3K1F|G Chain G, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|325053969|pdb|3PO2|G Chain G, Arrested Rna Polymerase Ii Elongation Complex
gi|325053984|pdb|3PO3|G Chain G, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634544|pdb|3QT1|G Chain G, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|353251639|pdb|3J0K|G Chain G, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
gi|357380842|pdb|4A3C|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546296|pdb|4A3B|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546314|pdb|4A3D|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546331|pdb|4A3E|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546348|pdb|4A3F|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546365|pdb|4A3J|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546382|pdb|4A3K|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546398|pdb|4A3L|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546415|pdb|4A3M|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977885|pdb|4A3G|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977900|pdb|4A3I|G Chain G, Rna Polymerase Ii Binary Complex With Dna
gi|380764985|pdb|4A93|G Chain G, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145452|pdb|4BBR|G Chain G, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145465|pdb|4BBS|G Chain G, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|300239|gb|AAC60558.1| RNA polymerase II subunit RPB7 [Saccharomyces cerevisiae]
gi|927335|gb|AAB64844.1| Rpb7p: RNA polymerase II subunit [Saccharomyces cerevisiae]
gi|151942377|gb|EDN60733.1| RNA polymerase B [Saccharomyces cerevisiae YJM789]
gi|190404660|gb|EDV07927.1| RNA polymerase II dissociable subunit [Saccharomyces cerevisiae
RM11-1a]
gi|256271208|gb|EEU06290.1| Rpb7p [Saccharomyces cerevisiae JAY291]
gi|259145642|emb|CAY78906.1| Rpb7p [Saccharomyces cerevisiae EC1118]
gi|285811422|tpg|DAA12246.1| TPA: Rpb7p [Saccharomyces cerevisiae S288c]
gi|323305480|gb|EGA59224.1| Rpb7p [Saccharomyces cerevisiae FostersB]
gi|323334047|gb|EGA75432.1| Rpb7p [Saccharomyces cerevisiae AWRI796]
gi|323349147|gb|EGA83378.1| Rpb7p [Saccharomyces cerevisiae Lalvin QA23]
gi|323355561|gb|EGA87382.1| Rpb7p [Saccharomyces cerevisiae VL3]
gi|349577455|dbj|GAA22624.1| K7_Rpb7p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365766199|gb|EHN07698.1| Rpb7p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 171
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 104/171 (60%), Gaps = 4/171 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIG--AGL 58
MF+ L I LHP +FGP++ + +K KL EVEG+CTGK+G+++ V D+I G
Sbjct: 1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGR 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
I P G + VKYRA+VF+PFKGEV+D V ++ G ++GP+ F++ H +P D+
Sbjct: 61 ILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLT 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
F SNP Y+S E VI IR+KI G S I AIG++ +DYLG
Sbjct: 121 FNAGSNPPSYQS--SEDVITIKSRIRVKIEGCISQVSSIHAIGSIKEDYLG 169
>gi|50287313|ref|XP_446086.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525393|emb|CAG59010.1| unnamed protein product [Candida glabrata]
gi|114049595|emb|CAL07955.1| hypothetical protein [Candida glabrata]
Length = 171
Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 104/171 (60%), Gaps = 4/171 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIG--AGL 58
MF+ L + LHP +FGP++ + +K KL EVEG+CTGK+G+++ V D+I G
Sbjct: 1 MFFIKDLSLNVTLHPSFFGPRMKQYIKTKLLQEVEGSCTGKFGYILCVLDYDNIEIERGR 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
I P G + VKYRA+VF+PFKGEV+D V ++ G ++GP+ F++ H +P D+
Sbjct: 61 ILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLT 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
F SNP Y+S E +I IR+KI G S I AIG++ +DYLG
Sbjct: 121 FNAGSNPPSYQS--SEDIITIKSRIRVKIEGCISQVSSIHAIGSIKEDYLG 169
>gi|156835988|ref|XP_001642239.1| hypothetical protein Kpol_186p3 [Vanderwaltozyma polyspora DSM
70294]
gi|156112712|gb|EDO14381.1| hypothetical protein Kpol_186p3 [Vanderwaltozyma polyspora DSM
70294]
Length = 171
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/171 (43%), Positives = 103/171 (60%), Gaps = 4/171 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIG--AGL 58
MF+ L I LHP +FGP++ + +K KL EVEG+CTGK+G+++ V D I G
Sbjct: 1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLQEVEGSCTGKFGYILCVLDYDKIEIERGR 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
I P G + VKYRAIVF+PFKGEV+D V ++ G ++GP+ F++ H +P D+
Sbjct: 61 ILPTDGSAEFTVKYRAIVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLI 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
F SNP Y+S E VI IR+KI G S I AIG++ +DYLG
Sbjct: 121 FNAGSNPPSYQS--SEDVITIKSRIRVKIEGCISQVSSIHAIGSIKEDYLG 169
>gi|399216595|emb|CCF73282.1| unnamed protein product [Babesia microti strain RI]
Length = 178
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 103/169 (60%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M++ I I + P GP + +++ L +EVEG CT K+G+V+ V I +G +Q
Sbjct: 1 MYFVIEQWKNIGIKPSQLGPNYQQCIEEMLRNEVEGHCTAKFGYVVCVIRIVHCESGRVQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G ++ VKY+AIVF+PFK EVLDA+VT VNK+G FA+ GPL F+S SI +
Sbjct: 61 DGTGMIIVSVKYQAIVFKPFKDEVLDAIVTDVNKLGFFAQAGPLKVFVSKSSIAPGYAYQ 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
+++ C+ G VI+ EIR+++ G R D S +FAI T+ DYLG
Sbjct: 121 DDASQPCFSD--GTSVIRSQTEIRMRLQGIRYDNSNMFAIATIKADYLG 167
>gi|111140005|gb|ABH06364.1| RNA polymerase II [Sorbus aucuparia]
Length = 110
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 86/110 (78%)
Query: 5 ISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQG 64
I LE + LHPR+FG L E + KL +VEGTC+G++GFV+A+T I++IG G+I+ G G
Sbjct: 1 IVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGQHGFVVAITGIENIGKGMIRDGTG 60
Query: 65 FVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIP 114
FV +P+KY+ +VFRPFKGE+L+AVVT VNK+G FAE GP+ F+S+H IP
Sbjct: 61 FVSFPMKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIP 110
>gi|367005626|ref|XP_003687545.1| hypothetical protein TPHA_0J02900 [Tetrapisispora phaffii CBS 4417]
gi|357525849|emb|CCE65111.1| hypothetical protein TPHA_0J02900 [Tetrapisispora phaffii CBS 4417]
Length = 171
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 104/171 (60%), Gaps = 4/171 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIG--AGL 58
MF+ L I+LHP +FGP++ + +K KL EVEG+CTGK+G+++ V D I G
Sbjct: 1 MFFIKDLSLNIILHPSFFGPRMKQYLKTKLLQEVEGSCTGKFGYILCVLDYDKIEIERGR 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
I G + VKYRA+VF+PFKGEV+D V ++ G A++GP+ F++ H +P D+
Sbjct: 61 ILATDGSAEFTVKYRAVVFKPFKGEVVDGTVVSCSQHGFEAQVGPMKVFVTKHLMPQDLV 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
F SNP Y+S E VI +R+KI G S I AIG++ +DYLG
Sbjct: 121 FNAGSNPPSYQS--AEDVITIKSRVRVKIEGCISQVSSIHAIGSIKEDYLG 169
>gi|167517525|ref|XP_001743103.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778202|gb|EDQ91817.1| predicted protein [Monosiga brevicollis MX1]
Length = 174
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 102/169 (60%), Gaps = 1/169 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ +L H++LLHPR+ L +K +LYSEVE +G+V+AV ID I G I
Sbjct: 1 MFFTETLTHDVLLHPRFLDQNLEAILKTQLYSEVECKVHRSHGYVLAVIKIDRISEGRIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
+G +++ V Y A++ RP +V+D +VT VN G+F IGPL+ F+S+ IP DM F
Sbjct: 61 FNRGEILFNVTYTAVILRPVPKQVIDTMVTSVNNRGIFVSIGPLTAFVSNSWIP-DMTFD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
++NP Y S + I+ +D +R+KI+ R+ A IF +L DYLG
Sbjct: 120 SDANPPRYISAKDGITIEPNDGVRVKIIAVRIAAQDIFITASLTGDYLG 168
>gi|290975310|ref|XP_002670386.1| predicted protein [Naegleria gruberi]
gi|284083944|gb|EFC37642.1| predicted protein [Naegleria gruberi]
Length = 161
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 93/137 (67%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ + L+ I LHP++FGP L T++ +L ++VEG CTG+ G++++VT I IG G I
Sbjct: 1 MFFLVDLDKNIRLHPKFFGPDLTRTLRARLQNDVEGQCTGRDGYIVSVTEITKIGQGKIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G+ +P+ Y+AIVF+PFKGEV DAVV +V VG FA +GPL+ F+S H++P DM++
Sbjct: 61 ESSGYATFPINYKAIVFKPFKGEVCDAVVYKVTPVGFFASVGPLNVFVSSHAVPDDMKYD 120
Query: 121 PNSNPVCYKSVHGEVVI 137
+ P + S +V I
Sbjct: 121 GHHTPPRFISEEAQVCI 137
>gi|378733137|gb|EHY59596.1| DNA-directed RNA polymerase II subunit G [Exophiala dermatitidis
NIH/UT8656]
Length = 169
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 109/169 (64%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ LE EI +HP +FG ++E +K +LY+++EG+C G+Y +++ + I +I AG ++
Sbjct: 1 MFFLRYLEREISIHPSFFGNSVHERLKDQLYADLEGSCNGEY-YIVCIMDIYNISAGRVR 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + + YRAI+++PFKGE +D V+ + G+F E GPL+ F+S +P DM+
Sbjct: 60 PGSGDAHFTILYRAILWKPFKGETIDCAVSSIKPQGVFCEAGPLTVFVSKLHLPPDMRHN 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
P++ P Y + G+ VI++ +R++++G R D ++AIG + + G
Sbjct: 120 PDATPPQYSNNAGD-VIEKGSAVRVQLIGLRSDVGNMYAIGKMSSQWFG 167
>gi|397575684|gb|EJK49830.1| hypothetical protein THAOC_31253 [Thalassiosira oceanica]
Length = 183
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTI--DSIGAGL 58
MFY LEHEI L P +FG +L +T+ + L EVEG YGFV+ V + + I +G+
Sbjct: 1 MFYVKMLEHEIELEPIHFGQKLKDTIVRLLKEEVEGLALANYGFVVNVIEVPEEQIRSGV 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
I+ G VV+ VKY A++ RPF EV+DA V Q N++G FA +GPL F+S HS+P DM
Sbjct: 61 IEYDTGNVVFYVKYTALMLRPFVNEVIDATVAQCNELGFFAYVGPLRIFVSKHSMPEDMF 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
+ + S EVVI +RLKI G V+ + I AIGT+ D+YLGL
Sbjct: 121 NGFDGERDSWVSDDKEVVISSGCGVRLKIKGRTVEQNNITAIGTIKDNYLGL 172
>gi|68075119|ref|XP_679476.1| DNA-directed RNA polymerase II [Plasmodium berghei strain ANKA]
gi|70932637|ref|XP_737810.1| DNA-directed RNA polymerase II [Plasmodium chabaudi chabaudi]
gi|56500233|emb|CAI04363.1| DNA-directed RNA polymerase II, putative [Plasmodium berghei]
gi|56513506|emb|CAH85055.1| DNA-directed RNA polymerase II, putative [Plasmodium chabaudi
chabaudi]
Length = 177
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 104/169 (61%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M++ I +++ P GP+ + ++ L + +EG CT KYG++I V I G +Q
Sbjct: 1 MYFVIEEWKNVIIKPSQLGPKYQQYIEDMLRNSIEGQCTEKYGYIICVIRIMHSEPGRVQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G +V VKY+AIVF+PFK EVLDA+VT VNK+G FA+ GPL FIS +IP ++
Sbjct: 61 DGTGMIVVKVKYQAIVFKPFKDEVLDAIVTDVNKLGFFAQAGPLKIFISRTAIPKYFEYT 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
+++ C+ S G I+ +RLK+ G R D S +FAI T+ ++YLG
Sbjct: 121 EDAHYPCFSS--GSHNIKPQTTVRLKLQGIRYDLSNMFAIATINNEYLG 167
>gi|224002987|ref|XP_002291165.1| 19kDa subunit of RNA polymerase [Thalassiosira pseudonana CCMP1335]
gi|220972941|gb|EED91272.1| 19kDa subunit of RNA polymerase [Thalassiosira pseudonana CCMP1335]
Length = 183
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTI--DSIGAGL 58
MFY +LEHEI L P +FG +L T+ + L EVEG YGFV+ V + + I +G+
Sbjct: 1 MFYVKTLEHEIELEPIHFGQKLRATIVRLLKEEVEGLALANYGFVVNVIEVPEEQIRSGI 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
I+ G VV+ VKY A++ RPF EV+DA V Q N++G FA +GPL F+S HS+P DM
Sbjct: 61 IEYDTGNVVFYVKYTALLLRPFINEVVDATVAQCNELGFFAYVGPLRIFVSKHSMPEDMF 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
+ + S EVVI +RLKI G V+ I AIGT+ D+YLGL
Sbjct: 121 NGFDGERDSWVSDDKEVVIASGCGVRLKIKGRTVEQGNITAIGTIKDNYLGL 172
>gi|367008802|ref|XP_003678902.1| hypothetical protein TDEL_0A03590 [Torulaspora delbrueckii]
gi|359746559|emb|CCE89691.1| hypothetical protein TDEL_0A03590 [Torulaspora delbrueckii]
Length = 171
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 102/171 (59%), Gaps = 4/171 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIG--AGL 58
MF+ L I LHP +FGP + + +K KL EVEG+CTGK+G+++ V D I G
Sbjct: 1 MFFIKDLSLNITLHPSFFGPHMKDYLKTKLLQEVEGSCTGKFGYILCVLDYDKIDIERGR 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
I P G + V+YRA+VF+PF+GEV+D V ++ G ++GP+ F++ H +P D+
Sbjct: 61 ILPTDGSADFIVRYRAVVFKPFRGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLI 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
F SNP Y+S E VI IR+KI G S I AIG++ +DYLG
Sbjct: 121 FNAGSNPPSYQS--SEDVITIKSRIRVKIEGCISQVSSIHAIGSIKEDYLG 169
>gi|221054089|ref|XP_002261792.1| dna-directed rna polymerase ii [Plasmodium knowlesi strain H]
gi|193808252|emb|CAQ38955.1| dna-directed rna polymerase ii, putative [Plasmodium knowlesi
strain H]
Length = 177
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M++ I +++ P GP+ + ++ L + VEG C KYG++I V I G +Q
Sbjct: 1 MYFVIEEWKNVIIKPSQLGPRYQQFIEDMLRNSVEGQCNAKYGYIICVIRIIHCEPGRVQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G +V VKY+AIVF+PFK EVLDAVVT VNK+G FA+ GPL FIS +IP ++
Sbjct: 61 DGTSMIVVKVKYQAIVFKPFKDEVLDAVVTDVNKLGFFAQAGPLKIFISRTAIPKYFEYS 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
+S+ C+ S G I+ +R+K+ G R D S +FAI T+ ++YLG
Sbjct: 121 EDSHYPCFSS--GVYNIKPQTTVRIKLQGIRYDLSNMFAIATINNEYLG 167
>gi|124802663|ref|XP_001347553.1| DNA-directed RNA polymerase II, putative [Plasmodium falciparum
3D7]
gi|23495135|gb|AAN35466.1|AE014833_37 DNA-directed RNA polymerase II, putative [Plasmodium falciparum
3D7]
Length = 177
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 104/169 (61%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M++ I +++ P GP+ + ++ L + VEG C+ KYG+VI V I G +Q
Sbjct: 1 MYFVIEEWKNVIIKPSQLGPRYQQYIEDMLRNSVEGQCSVKYGYVICVIRIIHSEPGRVQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G +V VKY+AIVF+PFK EVLDA+VT VNK+G FA+ GPL FIS +IP ++
Sbjct: 61 DGTGMIVVKVKYQAIVFKPFKDEVLDAIVTDVNKLGFFAQAGPLKIFISRTAIPKYFEYS 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
+ + C+ S G+ I+ +R+K+ G R D S +FAI T+ ++YLG
Sbjct: 121 EDLHYPCFSS--GDYNIKPQTTVRIKLQGIRYDLSNMFAIATINNEYLG 167
>gi|389582746|dbj|GAB65483.1| DNA-directed RNA polymerase II [Plasmodium cynomolgi strain B]
Length = 177
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M++ I +++ P GP+ + ++ L + VEG C KYG++I V I G +Q
Sbjct: 1 MYFVIEEWKNVIIKPSQLGPRYQQFIEDMLRNSVEGQCNAKYGYIICVIRIIHSEPGRVQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G +V VKY+AIVF+PFK EVLDAVVT VNK+G FA+ GPL FIS +IP ++
Sbjct: 61 DGTSMIVVKVKYQAIVFKPFKDEVLDAVVTDVNKLGFFAQAGPLKIFISRTAIPKYFEYS 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
+S+ C+ S G I+ +R+K+ G R D S +FAI T+ ++YLG
Sbjct: 121 EDSHYPCFSS--GVYNIKPQTTVRIKLQGIRYDLSNMFAIATINNEYLG 167
>gi|300706401|ref|XP_002995470.1| hypothetical protein NCER_101623 [Nosema ceranae BRL01]
gi|239604588|gb|EEQ81799.1| hypothetical protein NCER_101623 [Nosema ceranae BRL01]
Length = 155
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 107/170 (62%), Gaps = 17/170 (10%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ H I L+P Y GP++ +K LY +EG+C G+VI+V ID + G +
Sbjct: 1 MFFVKDFTHIIHLNPCYLGPKIQSLIKDYLYKTIEGSCNDS-GYVISVLEIDDVSEGTVS 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G + +KY+A+V +PFKGE ++A V ++NK+G+FA +GPL+ F+S+H IP+++Q
Sbjct: 60 L-NGATSFKIKYKALVLKPFKGETMEASVVEINKMGVFASVGPLTVFVSNHQIPSEIQ-- 116
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
E + +D +RLKI+GT++D+S I+A+GTL D+YLG+
Sbjct: 117 -------------EGGLLKDSIVRLKIIGTKIDSSKIYAVGTLNDEYLGI 153
>gi|156086074|ref|XP_001610446.1| DNA-directed RNA polymerase II [Babesia bovis T2Bo]
gi|154797699|gb|EDO06878.1| DNA-directed RNA polymerase II, putative [Babesia bovis]
Length = 175
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M++ + I + P GP + +++ L ++VEG C+ KYG+V+ V I G +Q
Sbjct: 1 MYFVVEQWKIINVKPSQLGPSYQQNIEEMLRNQVEGHCSSKYGYVVCVIRIIQNEVGRVQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G +V VKY+AIVF+PFK EVLDA+VT VNK+G FA+ GPL F+S +I +
Sbjct: 61 DGTGMIVVNVKYQAIVFKPFKDEVLDAIVTDVNKLGFFAQAGPLKAFVSRTAIQPSFVYD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
++ CY G + I+ E+R++I G R D S +FAI T+ DYLG
Sbjct: 121 SDAANPCY--TDGTISIKPQTEVRMRIQGIRYDNSNMFAIATVNADYLG 167
>gi|71032221|ref|XP_765752.1| DNA-directed RNA polymerase II subunit Rpb7 [Theileria parva strain
Muguga]
gi|84999556|ref|XP_954499.1| DNA-directed RNA polymerase ii [Theileria annulata]
gi|65305497|emb|CAI73822.1| DNA-directed RNA polymerase ii, putative [Theileria annulata]
gi|68352709|gb|EAN33469.1| DNA-directed RNA polymerase II subunit Rpb7, putative [Theileria
parva]
Length = 175
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M++ + I L P GP + +++ L +VEG CT KYG+V+ V I G +Q
Sbjct: 1 MYFVVEQWKLINLKPCQLGPNYQQNIEEMLRDQVEGHCTNKYGYVVCVIRIVQNDMGRVQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G +V VKY+AIVF+PFK EVLDA+VT VNK+G FA+ GPL F+S +SI + +
Sbjct: 61 DGTAMIVVNVKYQAIVFKPFKDEVLDAIVTDVNKLGFFAQAGPLKAFVSRNSIHPNFVYD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
+S CY G + I+ E+R+++ G + D S +FAI T+ D+LG
Sbjct: 121 SDSAYPCYSD--GTISIKPQSEVRMRLQGIKYDNSNLFAIATINADHLG 167
>gi|451849958|gb|EMD63261.1| hypothetical protein COCSADRAFT_38126 [Cochliobolus sativus ND90Pr]
gi|452001764|gb|EMD94223.1| hypothetical protein COCHEDRAFT_1202004 [Cochliobolus
heterostrophus C5]
Length = 171
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ LE I LHP YFGP + + + ++L + EG+ TGKY V + + D I G +
Sbjct: 1 MFFLKELEKTIQLHPSYFGPLIRQHIHRELLQKEEGSSTGKYTIVCILDSFD-ISDGKVM 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G Y V Y+A+V+RP+KGEV+D +VT V + G F + G L F+ IP +++F
Sbjct: 60 PGSGSAEYVVHYKAVVWRPYKGEVMDGIVTSVLRTGFFVDCGSLQAFVGRSMIPAEIKFD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
N+ P + GE VI++ IR+KI G R + ++A+GT+ +DYLG
Sbjct: 120 ANATPPQWTD-DGEQVIEKGTNIRIKIKGLRSEVDKMYAVGTMKEDYLG 167
>gi|326472096|gb|EGD96105.1| RNA polymerase II subunit 7 [Trichophyton tonsurans CBS 112818]
gi|326477039|gb|EGE01049.1| RNA polymerase II subunit 7 [Trichophyton equinum CBS 127.97]
Length = 160
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 103/169 (60%), Gaps = 11/169 (6%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ LEH + LHP +FG + E + QKL +VEG CTG Y +++ V + I G I
Sbjct: 1 MFFIHFLEHVLTLHPSFFGSHVKEYLSQKLLDDVEGICTGDY-YIVCVMDMYDISEGKII 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G Y + YRAIV++PFKGE G+FAE+GPL+ F+S H IP ++++
Sbjct: 60 PGSGLAEYTIVYRAIVWKPFKGE---------TNQGIFAEVGPLTVFVSKHLIPPEIKWD 110
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
P+S P Y + + VI+ +R+K++G R D +FAIG++ +DYLG
Sbjct: 111 PDSTPPQYTD-NADQVIETGTNLRIKLIGLRNDVRNMFAIGSIREDYLG 158
>gi|237832997|ref|XP_002365796.1| DNA-directed RNA polymerase II subunit RPB7, putative [Toxoplasma
gondii ME49]
gi|211963460|gb|EEA98655.1| DNA-directed RNA polymerase II subunit RPB7, putative [Toxoplasma
gondii ME49]
Length = 207
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ + H + L P G + + V+ L +VEG C G++I V I + AG +Q
Sbjct: 1 MFFVVEQWHNVALRPAQLGRRYTQYVETLLRQQVEGKCLHNLGYIICVIRIVHMEAGRVQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G V+ +Y+AI F+PFK EVLDAV+T VNK+G+FA+ GPL F+S S+P +
Sbjct: 61 DGTGMVIVAARYQAIAFKPFKDEVLDAVITDVNKLGLFAQCGPLKVFVSRASLPPSFVYQ 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
+S C GEV ++ D +IRL+++G R D+ +FAI T+ + YLG
Sbjct: 121 DDSAVGCMTD--GEVELRVDSDIRLRLLGVRYDSMNLFAIATINESYLG 167
>gi|156082005|ref|XP_001608495.1| DNA-directed RNA polymerase II [Plasmodium vivax Sal-1]
gi|148801066|gb|EDL42471.1| DNA-directed RNA polymerase II, putative [Plasmodium vivax]
Length = 177
Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 102/170 (60%), Gaps = 4/170 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M++ I +++ P GP+ + ++ L + VEG C KYG++I V I G +Q
Sbjct: 1 MYFVIEEWKNVIIKPSQLGPRYQQFIEDMLRNSVEGQCNAKYGYIICVIRIIHSEPGRVQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G +V VKY+AIVF+PFK EVLDAVVT VNK+G FA+ GPL FIS +IP ++
Sbjct: 61 DGTSMIVVKVKYQAIVFKPFKDEVLDAVVTDVNKLGFFAQAGPLKIFISRTAIPKFFEYS 120
Query: 121 PNSNPVCYKS-VHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
+S+ C+ S VH I+ +R+K+ G R D S +FAI T+ +YLG
Sbjct: 121 EDSHYPCFSSGVHN---IKPQTTVRIKLQGIRYDLSNMFAIATINSEYLG 167
>gi|189203085|ref|XP_001937878.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|330945443|ref|XP_003306557.1| hypothetical protein PTT_19733 [Pyrenophora teres f. teres 0-1]
gi|187984977|gb|EDU50465.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|311315891|gb|EFQ85355.1| hypothetical protein PTT_19733 [Pyrenophora teres f. teres 0-1]
Length = 171
Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ LE I LHP YFGP + + + ++L + EG+ TGKY V + + D I G +
Sbjct: 1 MFFLKELEKTIQLHPSYFGPLIRQHIHRELLQKEEGSSTGKYTIVCILDSFD-ISDGKVM 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G Y V Y+A+V+RP+KGEV+D +VT V + G F + G L F+ IP +++F
Sbjct: 60 PGTGSAEYVVHYKAVVWRPYKGEVMDGIVTSVLRTGFFVDCGSLQAFVGRSMIPAEIKFD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
N+ P + GE VI++ IR+KI G R + ++A+GT+ +DYLG
Sbjct: 120 ANATPPQWTD-DGEQVIEKGTNIRIKIKGLRSEVDKMYAVGTMKEDYLG 167
>gi|384486857|gb|EIE79037.1| hypothetical protein RO3G_03742 [Rhizopus delemar RA 99-880]
Length = 134
Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 98/149 (65%), Gaps = 19/149 (12%)
Query: 22 LYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFK 81
+ + ++ KLY++VEGTC+G+YG+V+ V ++ + G + PG G + V Y+AI+F+PFK
Sbjct: 1 MQDKIQDKLYADVEGTCSGRYGYVVTVVSVSRLEKGKVLPGSGLAEFKVSYQAILFKPFK 60
Query: 82 GEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDD 141
GEVLD +VT VNK+ IP + +F N NP CY S + VIQ+D
Sbjct: 61 GEVLDGLVTTVNKL-----------------IPNEFKFDVNGNPPCYSS--EDQVIQKDV 101
Query: 142 EIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
+RLK+VGTRVDA+ IFAIGT+ +DYLG+
Sbjct: 102 RVRLKLVGTRVDATEIFAIGTIKEDYLGV 130
>gi|221488256|gb|EEE26470.1| DNA-directed RNA polymerase II 19 kDa polypeptide, putative
[Toxoplasma gondii GT1]
gi|221508765|gb|EEE34334.1| DNA-directed RNA polymerase II 19 kDa polypeptide, putative
[Toxoplasma gondii VEG]
Length = 207
Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ + H + L P G + + V+ L +VEG C G++I V I + AG +Q
Sbjct: 1 MFFVVEQWHNVALRPAQLGRRYTQYVETLLRQQVEGKCLHNLGYIICVIRIVHMEAGRVQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G V+ +Y+AI F+PFK EVLDAV+T VNK+G+FA+ GPL F+S S+P +
Sbjct: 61 DGTGMVIVAARYQAIAFKPFKDEVLDAVITDVNKLGLFAQCGPLKVFVSRASLPPSFVYQ 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
+S C GEV ++ D +IRL+++G R D+ +FAI T+ + YLG
Sbjct: 121 DDSAVGCMTD--GEVELRVDSDIRLRLLGVRYDSMNLFAIATINESYLG 167
>gi|429963922|gb|ELA45920.1| hypothetical protein VCUG_02589 [Vavraia culicis 'floridensis']
Length = 155
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 105/170 (61%), Gaps = 17/170 (10%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L H I L P YF L V+ L EVEG C+ +GF++AV +I ++G ++
Sbjct: 1 MFFISELSHTIHLSPNYFDTNLQYAVRSHLLEEVEGACSSDHGFILAVISIQNVGEAVLN 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G V++ VKY AI +P + EV++A V +VNK+G+FA IGPLS F+S++ IP ++Q
Sbjct: 61 H-MGSVLFKVKYTAITLKPVRNEVIEAKVDEVNKMGLFAHIGPLSIFVSNYQIPNNLQES 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
I++D +RLKI+GT++D + I+A+GT+ +++LG+
Sbjct: 120 ----------------IKKDTLVRLKIIGTKIDKNEIYAVGTINEEFLGV 153
>gi|302506941|ref|XP_003015427.1| DNA-directed RNA polymerase complex II subunit Rpb7 [Arthroderma
benhamiae CBS 112371]
gi|291178999|gb|EFE34787.1| DNA-directed RNA polymerase complex II subunit Rpb7 [Arthroderma
benhamiae CBS 112371]
Length = 297
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 103/170 (60%), Gaps = 11/170 (6%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ LEH + LHP +FG + E + QKL +VEG CTG Y +++ V + I G I
Sbjct: 1 MFFIHFLEHVLTLHPSFFGSHVKEYLSQKLLDDVEGICTGDY-YIVCVMDMYDISEGKII 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G Y + YRAIV++PFKGE G+FAE+GPL+ F+S H IP ++++
Sbjct: 60 PGSGLAEYTIVYRAIVWKPFKGET---------NQGIFAEVGPLTVFVSKHLIPPEIKWD 110
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
P+S P Y + + VI+ +R+K++G R D +FAIG++ +DYLG
Sbjct: 111 PDSTPPQYTD-NADQVIETGTNLRIKLIGLRNDVRNMFAIGSIREDYLGF 159
>gi|449015716|dbj|BAM79118.1| RNA polymerase II subunit G [Cyanidioschyzon merolae strain 10D]
Length = 174
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 110/172 (63%), Gaps = 5/172 (2%)
Query: 2 FYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDS-IGAGLIQ 60
F+ + L + +HPR+F +L + V +L + EGT +G YG+++AV ++ + G I
Sbjct: 3 FFILELTKSVTVHPRHFHAKLPDHVINRLLTLTEGTTSGLYGYLLAVVEVERPLPPGRIL 62
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G ++ ++Y+A+V+RPF GEVLD V+ V + G+F +GPLS F+S ++P+DM+F
Sbjct: 63 PGTGHAIFRLRYKALVYRPFLGEVLDGVIASVTRHGVFVAVGPLSVFVSARNVPSDMEF- 121
Query: 121 PNSNPVCYKSV--HGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
+ + C+ SV E ++ +RL+IVG R DA+ I A+GTL DYLG+
Sbjct: 122 -DDSEQCFASVVQGSEDRLEVGTMVRLRIVGMRRDATEIAAVGTLRADYLGV 172
>gi|403220608|dbj|BAM38741.1| DNA-directed RNA polymerase II [Theileria orientalis strain
Shintoku]
Length = 180
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 100/169 (59%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M++ + I L P GP + +++ L +VEG CT KYG+V+ V I G +Q
Sbjct: 1 MYFVVEQWKLINLKPSQLGPNYQQNIEEMLRDQVEGHCTAKYGYVVCVIRIVHNDMGRVQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G +V VKY+AIVF+PFK EVLDA+VT VNK+G FA+ GPL F+S +SI + +
Sbjct: 61 DGTAMIVVNVKYQAIVFKPFKDEVLDAIVTDVNKLGFFAQAGPLKAFVSRNSIHPNFVYD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
+ CY G + I+ E+R+++ G + D + +FAI T+ D+LG
Sbjct: 121 NDGAYPCYTD--GTINIRAQSEVRMRLQGIKYDNANMFAIATINADHLG 167
>gi|401408717|ref|XP_003883807.1| putative DNA-directed RNA polymerase II subunit RPB7 [Neospora
caninum Liverpool]
gi|325118224|emb|CBZ53775.1| putative DNA-directed RNA polymerase II subunit RPB7 [Neospora
caninum Liverpool]
Length = 209
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 100/169 (59%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ + H + L P G + + V L +VEG C G++I V I + AG +Q
Sbjct: 1 MFFVVEQWHNVALRPAQLGRRYTQYVDTLLRQQVEGKCLHNLGYIICVIRIVHMEAGRVQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G V+ +Y+AI F+PFK EVLDAV+T VNK+G+FA+ GPL F+S S+P +
Sbjct: 61 DGTGMVIVAARYQAIAFKPFKDEVLDAVITDVNKLGLFAQCGPLKVFVSRASLPPSFVYQ 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
+S C GEV ++ D +IRL+++G R D+ +FAI T+ + +LG
Sbjct: 121 DDSAVGCMTD--GEVELRVDSDIRLRLLGVRYDSMNLFAIATINESFLG 167
>gi|323456227|gb|EGB12094.1| hypothetical protein AURANDRAFT_59851 [Aureococcus anophagefferens]
Length = 179
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 107/171 (62%), Gaps = 2/171 (1%)
Query: 2 FYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIG--AGLI 59
FY L +E+LLHP++FG ++ +K ++ VEG C G+ G+V+AV + G++
Sbjct: 4 FYKTDLIYEMLLHPQFFGGRMKSFIKDEIMKNVEGKCLGREGYVVAVLDVKDDDVDTGIV 63
Query: 60 QPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQF 119
G V +Y AI+ RPFK EVLDAVVT VN++G F E GPL+ F+S H++P D+Q
Sbjct: 64 DYDTGCVSVNARYSAILLRPFKNEVLDAVVTHVNELGFFTEAGPLTVFVSRHAMPPDLQE 123
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
+++ + S EV I+ +RL+++G DA+ I A+GT+ DDYLGL
Sbjct: 124 GYDADVDSWVSDDKEVEIKTKCVVRLRLLGVMCDATQITAVGTIKDDYLGL 174
>gi|440491704|gb|ELQ74318.1| DNA-directed RNA polymerase subunit E' [Trachipleistophora hominis]
Length = 155
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 104/170 (61%), Gaps = 17/170 (10%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L H I L P YF L V+ L EVEG C+ +GF++AV +I ++G ++
Sbjct: 1 MFFISELSHTIHLSPNYFDTNLQYAVRSHLLEEVEGACSSDHGFILAVLSIQNVGEAVLN 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G V++ VKY AI +P + EV++ V +VN +G+FA IGPLS F+S++ IP+++Q
Sbjct: 61 H-MGSVLFKVKYTAITLKPVRNEVIEVKVDEVNTMGLFAHIGPLSIFVSNYQIPSNLQES 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
I++D +RLKI+GT++D + I+A+GT+ +++LG+
Sbjct: 120 ----------------IKKDTLVRLKIIGTKIDKNEIYAVGTINEEFLGV 153
>gi|429328615|gb|AFZ80375.1| DNA-directed RNA polymerase II subunit Rpb7, putative [Babesia
equi]
Length = 175
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M++ + I + P GP + +++ L +VEG CT KYG+V+ V I G +Q
Sbjct: 1 MYFVVEQWKLINVKPSQLGPNYQQNIEEMLRDQVEGHCTAKYGYVVCVIRIVHNEIGRVQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G +V VKY+AIVF+PFK EVLDA+VT VNK+G FA+ GPL F+S SI + +
Sbjct: 61 DGTAMIVVNVKYQAIVFKPFKDEVLDAIVTDVNKLGFFAQAGPLKVFVSRTSIDPNFVYD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
++ CY G + I+ E+R++I G + S IFA+ T+ D+LG
Sbjct: 121 NDAAYPCYSD--GTISIKPQSEVRMRIQGISYENSNIFAVATINADHLG 167
>gi|428178976|gb|EKX47849.1| DNA-directed RNA polymerase II subunit RPB7 [Guillardia theta
CCMP2712]
Length = 183
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 107/181 (59%), Gaps = 13/181 (7%)
Query: 1 MFYHIS-LEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTID------S 53
MF+H+ L + + P+Y+GP L +KQ+L EVE +C+ +YG V+ V ID
Sbjct: 1 MFFHVKRLSKNLQIEPKYYGPSLAVVIKQRLQDEVENSCSERYGIVLKVFNIDVDNLEGK 60
Query: 54 IGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSI 113
I + PG G V+ V Y AIVF+PFKGEVL+ VV G+F + GPL FI+ ++
Sbjct: 61 IMPTGMHPG-GTAVFTVPYDAIVFKPFKGEVLNGVVKSSAAQGLFVQCGPLQVFIAKANL 119
Query: 114 PTD---MQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRV--DASGIFAIGTLMDDYL 168
D +++ ++ P C+ S +VI + +RL+I+GTR+ D S A+GT++DDYL
Sbjct: 120 ADDNNGLEWRGDNTPPCWMSRDERIVIGDKTHLRLRILGTRIQNDISQCSAVGTILDDYL 179
Query: 169 G 169
G
Sbjct: 180 G 180
>gi|82596806|ref|XP_726413.1| RNA polymerase II subunit 7 [Plasmodium yoelii yoelii 17XNL]
gi|23481815|gb|EAA17978.1| RNA polymerase II subunit 7 [Plasmodium yoelii yoelii]
Length = 193
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 104/185 (56%), Gaps = 18/185 (9%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M++ I +++ P GP+ + ++ L + +EG CT KYG++I V I G +Q
Sbjct: 1 MYFVIEEWKNVIIKPSQLGPKYQQYIEDMLRNSIEGQCTEKYGYIICVIRIMHSEPGRVQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGE----------------VLDAVVTQVNKVGMFAEIGPL 104
G G +V VKY+AIVF+PFK E VLDA+VT VNK+G FA+ GPL
Sbjct: 61 DGTGMIVVKVKYQAIVFKPFKDEVLFKINKLINKLIKSFVLDAIVTDVNKLGFFAQAGPL 120
Query: 105 SCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLM 164
FIS +IP ++ +++ C+ S G I+ +RLK+ G R D S +FAI T+
Sbjct: 121 KIFISRTAIPKYFEYNEDAHYPCFSS--GSHNIKPQTTVRLKLQGIRYDLSNMFAIATIN 178
Query: 165 DDYLG 169
++YLG
Sbjct: 179 NEYLG 183
>gi|169602421|ref|XP_001794632.1| hypothetical protein SNOG_04209 [Phaeosphaeria nodorum SN15]
gi|160706165|gb|EAT87969.2| hypothetical protein SNOG_04209 [Phaeosphaeria nodorum SN15]
Length = 188
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 102/186 (54%), Gaps = 19/186 (10%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ LE I LHP YFGP + + ++L + EG+ TGKY V + D I G +
Sbjct: 1 MFFLKELEKTIQLHPSYFGPLIRSHIHRELLQKEEGSSTGKYTIVCILDAFD-ISDGKVL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHH--------- 111
PG G Y V Y+AIV+RP+KGEV+D VVT V + G F + G L F+ +
Sbjct: 60 PGSGHAEYIVHYKAIVWRPYKGEVMDGVVTSVLRTGFFVDCGSLQAFVGRNVRMPCASCR 119
Query: 112 --------SIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTL 163
IP+D+ F N+ P + +GE VI++ IR+KI G R + +FA+GT+
Sbjct: 120 YPSTNTTQMIPSDITFDANATPPQWTD-NGEQVIEKGTNIRIKIKGLRSEVDKMFAVGTM 178
Query: 164 MDDYLG 169
+DYLG
Sbjct: 179 KEDYLG 184
>gi|396081803|gb|AFN83418.1| DNA-directed RNA polymerase II subunit E' [Encephalitozoon romaleae
SJ-2008]
Length = 155
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 102/170 (60%), Gaps = 17/170 (10%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ I L P Y GP + +++ L S+VEG+C+ G+V+ V +ID + I
Sbjct: 1 MFFVRDFVQNIHLSPSYLGPNIQTLIEEYLLSKVEGSCSSS-GYVVMVLSIDEVSESRII 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G ++ VKY+A+ +PFKGE++DA V + NK+G+FA +GPL+ FIS+H IP +
Sbjct: 60 L-TGETIFTVKYKALTLKPFKGEIIDANVVETNKMGVFASVGPLTVFISNHQIPNFLL-- 116
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
E I +D IRLKI+GT++D++ I+A+GTL DD LG+
Sbjct: 117 -------------ENEITKDIMIRLKIIGTKIDSTKIYAVGTLNDDSLGI 153
>gi|298710882|emb|CBJ26391.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 177
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 102/178 (57%), Gaps = 14/178 (7%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTI--DSIGAGL 58
MFY L +L+ P FGP+L +T+++KL EVEGT G GFVI VT + D I G
Sbjct: 1 MFYLKELRRPMLVPPSDFGPKLKDTIRRKLIEEVEGTSVGSLGFVITVTNVSDDQIQMGT 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
I+ GF V YRAI FRPF EVLDA V+ V ++G FAE+GPL F+S +P D+
Sbjct: 61 IEFDTGFANVLVVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDI- 119
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEI------RLKIVGTRVDASGIFAIGTLMDDYLGL 170
+PV V E D EI RL+I+G V A + A+G++ DD+LGL
Sbjct: 120 -AGGYDPVGDMWVSSE---DSDTEIKSGCGVRLRIIGVTVGAE-LKAVGSIKDDFLGL 172
>gi|407929414|gb|EKG22244.1| hypothetical protein MPH_00423 [Macrophomina phaseolina MS6]
Length = 171
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ LE I LHP + GP ++E ++ +L +VEG Y ++I V G +
Sbjct: 1 MFFLHELERTITLHPSFLGPNVHEYIEDRLKQDVEGIQIENY-YIICVMDSQDKSEGRVL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G++ Y V ++AIV+RPFKGE+LD +V+ V G F ++GPL+ F++ IP+ +++
Sbjct: 60 PGTGYIEYTVHFKAIVWRPFKGEILDGIVSAVVDSGFFVDVGPLNVFVASSMIPSSIKYD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
N+ P + + + VI++ IR+KI G R + ++AI T+ +DYLG
Sbjct: 120 GNATPPQWTD-NADQVIEKGTHIRVKIKGIRTELGNMYAIATIKEDYLG 167
>gi|401827167|ref|XP_003887676.1| RNA polymerase II subunit 7 [Encephalitozoon hellem ATCC 50504]
gi|392998682|gb|AFM98695.1| RNA polymerase II subunit 7 [Encephalitozoon hellem ATCC 50504]
Length = 155
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 102/170 (60%), Gaps = 17/170 (10%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ I L P Y GP + +++ L ++VEG+C+ G+V+ V +ID I I
Sbjct: 1 MFFVRDFVQNIHLSPSYLGPNIQTLIEEYLLTKVEGSCSSS-GYVVMVLSIDEISESRII 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G ++ VKY+A+ +PFKGE++DA V + NK+G+FA +GPL+ FIS+H IP +
Sbjct: 60 L-TGETIFTVKYKALTLKPFKGEIIDANVVETNKMGVFASVGPLTVFISNHQIPNFLL-- 116
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
E I +D IRLKI+GT++D++ I+A+GTL DD LG+
Sbjct: 117 -------------ENEITKDVMIRLKIIGTKIDSTKIYAVGTLNDDSLGI 153
>gi|119594497|gb|EAW74091.1| polymerase (RNA) II (DNA directed) polypeptide G, isoform CRA_b
[Homo sapiens]
Length = 97
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 73/89 (82%)
Query: 82 GEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDD 141
G + + + +VG+F EIGP+SCFIS HSIP++M+F PNSNP CYK++ ++VIQ+DD
Sbjct: 7 GHTVSSCFSSSLQVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDD 66
Query: 142 EIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
EIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct: 67 EIRLKIVGTRVDKNDIFAIGSLMDDYLGL 95
>gi|303390119|ref|XP_003073291.1| DNA-directed RNA polymerase II subunit E' [Encephalitozoon
intestinalis ATCC 50506]
gi|303302436|gb|ADM11931.1| DNA-directed RNA polymerase II subunit E' [Encephalitozoon
intestinalis ATCC 50506]
Length = 155
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 101/170 (59%), Gaps = 17/170 (10%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ I L P Y GP + +++ L S+VEG+C+ G+VI V +ID I I
Sbjct: 1 MFFVRDFTQNIHLSPSYLGPNIQTLIEEYLLSKVEGSCSSS-GYVIMVLSIDEISESRII 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G ++ VKY+A+ +P KGE++DA V + NK+G+FA +GPL+ FIS+H IP +
Sbjct: 60 L-TGETIFTVKYKALTLKPLKGEIVDANVVETNKMGVFASVGPLTVFISNHQIPNFLL-- 116
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
E I +D IRLKI+GT++D++ I+A+GTL DD LG+
Sbjct: 117 -------------ENEITKDVMIRLKIIGTKIDSTKIYAVGTLNDDSLGI 153
>gi|164427822|ref|XP_965434.2| DNA-directed RNA polymerase II 19 kDa polypeptide [Neurospora
crassa OR74A]
gi|157071898|gb|EAA36198.2| DNA-directed RNA polymerase II 19 kDa polypeptide [Neurospora
crassa OR74A]
Length = 150
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 95/148 (64%), Gaps = 2/148 (1%)
Query: 22 LYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFK 81
++E V KL +VEGTC G Y ++IA+ + G I PG G + VKYRA+V+RPFK
Sbjct: 1 MHELVTTKLVKDVEGTCAGDY-YIIAIMDAFDVSEGRILPGNGLAEFTVKYRAVVWRPFK 59
Query: 82 GEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDD 141
GEV+DA+V +N G F + GPLS F+S H +P ++ F PN+ P + + + ++VI+
Sbjct: 60 GEVVDAIVFSINPHGFFCQAGPLSIFVSSHLMPEEIHFDPNATPPQFTN-NADMVIEPGT 118
Query: 142 EIRLKIVGTRVDASGIFAIGTLMDDYLG 169
+R+KI G R + ++AIG++ D+LG
Sbjct: 119 HVRVKIGGLRTELGEMYAIGSINGDFLG 146
>gi|19074596|ref|NP_586102.1| DNA-DIRECTED RNA POLYMERASE II 19kDa SUBUNIT [Encephalitozoon
cuniculi GB-M1]
gi|19069238|emb|CAD25706.1| DNA-DIRECTED RNA POLYMERASE II 19kDa SUBUNIT [Encephalitozoon
cuniculi GB-M1]
gi|449329612|gb|AGE95883.1| DNA-directed RNA polymerase II 19kDa subunit [Encephalitozoon
cuniculi]
Length = 155
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 101/170 (59%), Gaps = 17/170 (10%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ I L P Y GP + +++ L S+VEG+C+ G+V+ V +ID I I
Sbjct: 1 MFFVRDFVQNIHLSPNYLGPNIQALIEEYLLSKVEGSCSSS-GYVVMVLSIDEISESRII 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G ++ VKY+A+ +P KGEV+DA V + NK+G+FA +GPL+ FIS+H IP +
Sbjct: 60 L-TGETIFTVKYKALTLKPLKGEVIDANVVETNKMGVFASVGPLTVFISNHQIPNFLL-- 116
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
E I ++ IRLKI+GT++D++ I+A+GTL DD LG+
Sbjct: 117 -------------ENEITKNVMIRLKIIGTKIDSTRIYAVGTLNDDSLGI 153
>gi|449297101|gb|EMC93119.1| hypothetical protein BAUCODRAFT_228826 [Baudoinia compniacensis
UAMH 10762]
Length = 171
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ +LEH + LHP YF Q ++++LY E EG TG +IA+ I+ + +
Sbjct: 1 MFFVKTLEHRLTLHPSYFSAQSQAYIEEQLYREQEGKNTGTM-LIIAIIDIEDVSEPKVV 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G Y V +RAIV+RPF+GEV+D +V+ V G F ++G L+ F+S IP ++F
Sbjct: 60 PGSGLAQYDVSFRAIVWRPFRGEVVDGLVSSVISGGFFVDVGGLAVFVSKALIPPQLKFS 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
+ Y + + I+ ++RL+I G R + ++AIG++ +DYLG
Sbjct: 120 VEGSAPSYTD-NVDQTIERGTQVRLRIKGIRAEMGQMYAIGSIREDYLG 167
>gi|452848074|gb|EME50006.1| hypothetical protein DOTSEDRAFT_122159 [Dothistroma septosporum
NZE10]
Length = 167
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 103/169 (60%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ E E+ +HP +F + ++++L+S++EGT G +I + ID + ++
Sbjct: 1 MFFIAHRERELSMHPSFFDSGASDKIREQLHSDLEGTIEGTL-MIIQIIEIDEVSEPMLV 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G Y V YRA+V+RPF+GEV+D +VT V G F E+G +S F++ IP+++++
Sbjct: 60 PGTGMAKYTVSYRALVWRPFRGEVVDGLVTSVVSNGFFVEVGGMSVFVARAMIPSNLKYT 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
+ + + E I++D ++R++I G R + +FAIG++ +DYLG
Sbjct: 120 VEGSTPSFTD-NSEQNIEKDTQVRVRIKGIRGEIGQMFAIGSIREDYLG 167
>gi|389641835|ref|XP_003718550.1| hypothetical protein MGG_17442 [Magnaporthe oryzae 70-15]
gi|351641103|gb|EHA48966.1| hypothetical protein MGG_17442 [Magnaporthe oryzae 70-15]
gi|440469750|gb|ELQ38847.1| DNA-directed RNA polymerase II subunit RPB7 [Magnaporthe oryzae
Y34]
gi|440482256|gb|ELQ62763.1| DNA-directed RNA polymerase II subunit RPB7 [Magnaporthe oryzae
P131]
Length = 172
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 98/169 (57%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ +LE + LHP +FG ++E V Q+L ++ EGTC G + ++I+V I G I
Sbjct: 1 MFFLHNLERVVSLHPSFFGKNMHEIVVQRLLADTEGTCQGDF-YIISVMDAVDISPGKIV 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG + V YRA+V+RPFKG+ +D +V VN+ G F +GPL FI+ P D+ +
Sbjct: 60 PGNAMAEFTVNYRAVVWRPFKGQTVDGIVDSVNQHGFFIAVGPLRVFITKQMCPPDVIYD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
N++P + ++ R +I+G R + ++AIGT+ +D+LG
Sbjct: 120 ANASPPVFTD-KDTWLVDVGTLCRARIIGLRSEVDTMWAIGTVNEDFLG 167
>gi|378756379|gb|EHY66403.1| hypothetical protein NERG_00043 [Nematocida sp. 1 ERTm2]
Length = 170
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFY +E I+L P+Y G ++ ETV+++L SEVEG C + G++I++ +ID++ I
Sbjct: 1 MFYIRQMEERIVLEPKYLGKKIEETVRKRLVSEVEGKCMAECGYIISIISIDNLYTTEID 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G + +Y A+ P K EV +AVV ++NK+G+F IGPLS FIS H + QF
Sbjct: 61 SATGSGTFLAEYSALTLFPKKNEVANAVVHEINKMGVFCYIGPLSVFISIHQLSG--QFI 118
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
G I +D +RLK++G +++ + IF + T+ DDYLG
Sbjct: 119 EAGAHSSIIQHDGGSAIVKDSIVRLKLIGVKIEPTKIFGVATINDDYLG 167
>gi|402582187|gb|EJW76133.1| hypothetical protein WUBG_12956 [Wuchereria bancrofti]
Length = 111
Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/82 (69%), Positives = 67/82 (81%)
Query: 89 VTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIV 148
V V VG+F +IGPLSCF+S H IP DM+F PNSNP CYK+ VVI++DDEIR+K++
Sbjct: 26 VPYVGMVGLFCDIGPLSCFVSRHCIPPDMEFEPNSNPPCYKTADESVVIKQDDEIRVKLI 85
Query: 149 GTRVDASGIFAIGTLMDDYLGL 170
GTRVDAS IFAIGTLMDDYLGL
Sbjct: 86 GTRVDASDIFAIGTLMDDYLGL 107
>gi|387594745|gb|EIJ89769.1| hypothetical protein NEQG_00539 [Nematocida parisii ERTm3]
gi|387596407|gb|EIJ94028.1| hypothetical protein NEPG_00693 [Nematocida parisii ERTm1]
Length = 170
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 98/169 (57%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFY +E I+L P+Y G ++ ETV+++L SEVEG C G++I++ +ID++ +
Sbjct: 1 MFYIRQMEERIVLEPKYLGKKIEETVRKRLMSEVEGKCKADCGYIISIISIDNLYTTEVD 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G + +Y A+ P K EV +AVV ++NK+G+F IGP S FIS H + QF
Sbjct: 61 STSGSATFLAEYSALTLFPKKNEVANAVVHEINKMGIFCFIGPFSVFISIHQLSG--QFI 118
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
G VI +D +RL+++G +++ + IF + T+ DDYLG
Sbjct: 119 EAGAHSSIIQHDGGSVIVKDSIVRLRLIGVKIEPTKIFGVATINDDYLG 167
>gi|365761292|gb|EHN02956.1| Rpb7p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 150
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 91/150 (60%), Gaps = 4/150 (2%)
Query: 22 LYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIG--AGLIQPGQGFVVYPVKYRAIVFRP 79
+ + +K KL EVEG+CTGK+G+++ V D+I G I P G + VKYRA+VF+P
Sbjct: 1 MKQYLKAKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKP 60
Query: 80 FKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQE 139
FKGEV+D V ++ G ++GP+ F++ H +P D+ F SNP Y+S E VI
Sbjct: 61 FKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQS--SEDVITI 118
Query: 140 DDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
IR+KI G S I AIG++ +DYLG
Sbjct: 119 KSRIRVKIEGCISQVSSIHAIGSIKEDYLG 148
>gi|323309699|gb|EGA62907.1| Rpb7p [Saccharomyces cerevisiae FostersO]
gi|323338133|gb|EGA79367.1| Rpb7p [Saccharomyces cerevisiae Vin13]
gi|392300523|gb|EIW11614.1| Rpb7p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 150
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 91/150 (60%), Gaps = 4/150 (2%)
Query: 22 LYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIG--AGLIQPGQGFVVYPVKYRAIVFRP 79
+ + +K KL EVEG+CTGK+G+++ V D+I G I P G + VKYRA+VF+P
Sbjct: 1 MKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKP 60
Query: 80 FKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQE 139
FKGEV+D V ++ G ++GP+ F++ H +P D+ F SNP Y+S E VI
Sbjct: 61 FKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQS--SEDVITI 118
Query: 140 DDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
IR+KI G S I AIG++ +DYLG
Sbjct: 119 KSRIRVKIEGCISQVSSIHAIGSIKEDYLG 148
>gi|429961557|gb|ELA41102.1| hypothetical protein VICG_01895 [Vittaforma corneae ATCC 50505]
Length = 154
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 99/170 (58%), Gaps = 18/170 (10%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFY H + LHP+Y G + +++ L +VEGTCT G++I+V ID I G +
Sbjct: 1 MFYVKRFVHRLSLHPQYLGQNIQSLIQEYLLKKVEGTCTSS-GYIISVLGIDGISEGKVL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G + + V+Y+A+V +P GE++DA + K+G FA +GPLS FIS++ IP
Sbjct: 60 L-TGHISFDVEYQAVVLKPTSGEIVDAPIVSSTKMGYFASVGPLSIFISNYQIPNTTLEE 118
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
+N V +RLKI+GT++D++ ++AIGTL DD+LG+
Sbjct: 119 LGNNSV----------------VRLKIIGTKIDSTKVYAIGTLNDDFLGV 152
>gi|302925647|ref|XP_003054136.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735077|gb|EEU48423.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 147
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 96/170 (56%), Gaps = 29/170 (17%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ +LE + LHP +FG +++ V KL ++VEGTC G Y F+I++ I G I
Sbjct: 1 MFFLYNLERRVTLHPSFFGRNMHDLVTHKLLTDVEGTCAGSY-FIISIMDTFDISEGRIL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + V YRA+V+RPFKGE L IP+D+++
Sbjct: 60 PGNGLAEFTVGYRAVVWRPFKGETL---------------------------IPSDIKWD 92
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PN+ P + + + + VI+ D +R+KI+GTR + ++AIG++ +DYLG+
Sbjct: 93 PNATPPQFTN-NEDTVIEPDTHVRVKIIGTRTEVGEMWAIGSIKEDYLGM 141
>gi|398411600|ref|XP_003857138.1| hypothetical protein MYCGRDRAFT_66842 [Zymoseptoria tritici IPO323]
gi|339477023|gb|EGP92114.1| hypothetical protein MYCGRDRAFT_66842 [Zymoseptoria tritici IPO323]
Length = 167
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ +++ E+ +HP YF + V +L +++EGT G VI + ++ I +Q
Sbjct: 1 MFFVKNMDREVTIHPSYFNSDAEKIVLDRLRADIEGTIEGTL-MVIRIVDVEDISEPKLQ 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G VY + YRAIV+RPF+GEV+D +V+ V G F ++G LS F+S IP+ +++
Sbjct: 60 PGTGMAVYHLHYRAIVWRPFRGEVVDGLVSSVVNNGFFVDVGALSVFVSKAMIPSTLKYT 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
+ + + V + ++RL+I G R + ++AIG++ +DYLG
Sbjct: 120 MEGSTPAFTDNQDQSV-ERGTQVRLRIKGIRGEMGSMYAIGSIREDYLG 167
>gi|396472452|ref|XP_003839119.1| hypothetical protein LEMA_P027920.1 [Leptosphaeria maculans JN3]
gi|312215688|emb|CBX95640.1| hypothetical protein LEMA_P027920.1 [Leptosphaeria maculans JN3]
Length = 1244
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 99/165 (60%), Gaps = 2/165 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ LE I LHP YFGP + + + ++L + EG+ TGKY V + + I G +
Sbjct: 1 MFFLKELEKTIQLHPSYFGPLIRQHIHRELLQKEEGSSTGKYAIVCILDAFE-ISDGKVM 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G Y V Y+AIV+RP+KGEV+D VV V + G F + G L F+ H IP++++F
Sbjct: 60 PGSGSAEYVVHYKAIVWRPYKGEVVDGVVVSVLRTGFFVDCGSLQVFVGRHMIPSEVKFD 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMD 165
N+ P + + GE VI++ IR+KI G R + ++A+GT+ +
Sbjct: 120 ANATPPQW-TDDGEQVIEKGTNIRIKIKGLRSEVEKMYAVGTMKE 163
>gi|452987401|gb|EME87156.1| hypothetical protein MYCFIDRAFT_89029 [Pseudocercospora fijiensis
CIRAD86]
Length = 170
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 97/169 (57%), Gaps = 3/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ + E++LHP +F + KLY +++G G VI + +D I ++
Sbjct: 1 MFFVANRTREVVLHPSFFDSSANAKIIAKLYDDMQGNIEGTE-IVIQIIGVDDISEPVLV 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G Y + YRAI++RPF+GEV+D +VT V G F E+G ++ F+S IP+++++
Sbjct: 60 PGTGMAKYVLSYRAIIWRPFRGEVVDGLVTTVVSNGFFVEVGAMTVFVSRSMIPSNLKYT 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
+ + + + I+ +IRL++ G R + +FA+G++ +DYLG
Sbjct: 120 VEGSTPSFTDNNDQ--IERGTQIRLRLKGIRGEIGSMFAVGSIAEDYLG 166
>gi|453089186|gb|EMF17226.1| DNA-directed RNA polymerase II subunit RPB7 [Mycosphaerella
populorum SO2202]
Length = 171
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 94/169 (55%), Gaps = 2/169 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ E LHP +F V+Q+LY ++EG G ++ + ID I ++
Sbjct: 1 MFFVAHRVRECTLHPSFFNSGADAQVRQRLYEDMEGKVEGTE-MIVQIIEIDEISEPVLV 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G Y + YRAIV+RPF+GEV+D +VT V G F ++G LS F+S IP +++
Sbjct: 60 PGTGMAKYTLSYRAIVWRPFRGEVVDGMVTSVVNNGFFVDVGALSVFVSKAMIPGALKYT 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
+ + + + I+ ++RL+I G R + ++AIG++ +DYLG
Sbjct: 120 VEGSTPSFTD-NSDQTIERGTQVRLRIKGIRGEMGSMYAIGSIREDYLG 167
>gi|426368872|ref|XP_004051425.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Gorilla gorilla gorilla]
gi|119594496|gb|EAW74090.1| polymerase (RNA) II (DNA directed) polypeptide G, isoform CRA_a
[Homo sapiens]
gi|149062300|gb|EDM12723.1| polymerase (RNA) II (DNA directed) polypeptide G, isoform CRA_b
[Rattus norvegicus]
Length = 69
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/67 (73%), Positives = 60/67 (89%)
Query: 104 LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTL 163
+SCFIS HSIP++M+F PNSNP CYK++ ++VIQ+DDEIRLKIVGTRVD + IFAIG+L
Sbjct: 1 MSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSL 60
Query: 164 MDDYLGL 170
MDDYLGL
Sbjct: 61 MDDYLGL 67
>gi|320592229|gb|EFX04668.1| RNA polymerase 2 subunit 7 [Grosmannia clavigera kw1407]
Length = 144
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 91/169 (53%), Gaps = 29/169 (17%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ +LE + LHP YFG ++E V KL +VEGTC G Y ++I++ I AG I
Sbjct: 1 MFFLHNLERRVTLHPSYFGRNMHELVTTKLLKDVEGTCAGNY-YIISIMDTFDISAGKIL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + V YRA+V+RPFKGE + IP+ +++
Sbjct: 60 PGNGLAEFTVGYRAVVWRPFKGETM---------------------------IPSQVKYD 92
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PN+ P + + + I+ IR+KI+GTR + ++AIGT+ +DYLG
Sbjct: 93 PNATPPQFTD-NEDYRIEPGTHIRVKIMGTRSEVGEMWAIGTINEDYLG 140
>gi|342876142|gb|EGU77800.1| hypothetical protein FOXB_11664 [Fusarium oxysporum Fo5176]
Length = 171
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 92/169 (54%), Gaps = 29/169 (17%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ +LE ++ LHP + G +++ V KL +VEGTC G Y F+I++ I G I
Sbjct: 1 MFFLYNLERKVTLHPSFMGRNMHDLVTAKLLKDVEGTCAGSY-FIISIMDAFEISEGRIL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + V YRA+V+RPFKGE L IP+D+++
Sbjct: 60 PGLGMAEFTVGYRAVVWRPFKGETL---------------------------IPSDVKYD 92
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
PN+ P + + + + I+ +R+KI+GTR + ++AIG++ +DYLG
Sbjct: 93 PNATPPQFTN-NEDTSIEPQTHVRVKIIGTRTEVGEMWAIGSIKEDYLG 140
>gi|209882951|ref|XP_002142910.1| DNA-directed RNA polymerase II subunit RPB7 [Cryptosporidium muris
RN66]
gi|209558516|gb|EEA08561.1| DNA-directed RNA polymerase II subunit RPB7, putative
[Cryptosporidium muris RN66]
Length = 176
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 94/173 (54%), Gaps = 6/173 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ + L I L P GP+ E + L S+VEG +G+V+ V I G IQ
Sbjct: 1 MFFFVELWKNISLSPNQLGPRYDEHIDDILRSQVEGQWITSFGYVVCVVRILLRQPGRIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLS-CFISHHSIPTDMQF 119
G G ++ P+KY+AIV+RP KGEV+D V VN++G+ GPL F+S ++P ++ +
Sbjct: 61 DGTGLIIVPIKYQAIVYRPMKGEVIDGTVESVNELGIIVNCGPLKRVFVSQSALPENISY 120
Query: 120 CP---NSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
S Y ++ I+++ E+R+++ G V+ + A+ + DYLG
Sbjct: 121 SSGVDGSTARAYLDSKSQLQIKQNTEVRVRLRG--VNHETLSAVAEMNSDYLG 171
>gi|160330989|ref|XP_001712202.1| rpb7 [Hemiselmis andersenii]
gi|159765649|gb|ABW97877.1| rpb7 [Hemiselmis andersenii]
Length = 175
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 93/171 (54%), Gaps = 2/171 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTI-DSIGAGLI 59
MF+ +L I + +YF + + + L VEG+ G +G ++ +T I + G G +
Sbjct: 1 MFFITTLNQNIYISAKYFKKNIKKNLVSTLLGNVEGSYAGPFGNIVIITEICNKWGKGKL 60
Query: 60 QPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQF 119
G ++ V +RAI FRPFKGEV D+++T + VG F+E G L F+S + +P D Q+
Sbjct: 61 IIGTPSAMFNVTFRAITFRPFKGEVFDSIITNLTNVGFFSEAGALQIFVSKNQLPNDFQY 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
+ V + ++ E +D IR+KI+ + + + IGT+ +LGL
Sbjct: 121 -NGKDKVFFNTMSPEEKFCKDSLIRIKIISVKNEKNSNHVIGTIKGPFLGL 170
>gi|344241771|gb|EGV97874.1| DNA-directed RNA polymerase II subunit RPB7 [Cricetulus griseus]
Length = 69
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/67 (71%), Positives = 59/67 (88%)
Query: 104 LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTL 163
+SCFIS HSIP++M+F PNSNP CYK++ ++VIQ+DDEIRLKIVGTRVD + IFAIG+
Sbjct: 1 MSCFISRHSIPSEMEFDPNSNPPCYKTMGEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSP 60
Query: 164 MDDYLGL 170
MDDYLGL
Sbjct: 61 MDDYLGL 67
>gi|126644185|ref|XP_001388228.1| DNA-directed RNA polymerase II [Cryptosporidium parvum Iowa II]
gi|126117301|gb|EAZ51401.1| DNA-directed RNA polymerase II, putative [Cryptosporidium parvum
Iowa II]
Length = 178
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 95/173 (54%), Gaps = 6/173 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ + L I + P GP+ E + L S+VEG YG+V+ V I G +Q
Sbjct: 1 MFFFVELWRNISVKPSQLGPRYNEHIDDILRSQVEGQRAPPYGYVVCVIKIILKQPGRVQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLS-CFISHHSIPTDMQF 119
G ++ PVKY+AIV+RP KGEV+D VV VN++G+ + GPL F+S ++P +M +
Sbjct: 61 DSTGLIIVPVKYQAIVYRPIKGEVVDGVVESVNELGVIVDCGPLKRVFVSQSALPENMVY 120
Query: 120 ---CPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
+ Y ++ I+++ ++RL++ G V+ + A+ + D+LG
Sbjct: 121 KSGIDGQSSRIYIDTKTQIQIKQNSQVRLRLRG--VNNETLSAVAEMNSDFLG 171
>gi|258575729|ref|XP_002542046.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Uncinocarpus
reesii 1704]
gi|237902312|gb|EEP76713.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Uncinocarpus
reesii 1704]
Length = 199
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 72 YRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSV 131
YRAIV++PFKGE +DA+VT V G+FAE+GPL+ F+S H IP ++++ P++ P Y
Sbjct: 2 YRAIVWKPFKGETVDAIVTSVKNQGIFAEVGPLTVFVSKHLIPPEIKWDPDATPPQYTD- 60
Query: 132 HGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
+ + VI++ +R+K++G R D +FAIG++ +DYLG+
Sbjct: 61 NADQVIEKGTNLRIKLIGLRNDVRNMFAIGSIKEDYLGI 99
>gi|330038755|ref|XP_003239691.1| RNA polymerase II RPB7 subunit-like protein [Cryptomonas
paramecium]
gi|327206615|gb|AEA38793.1| RNA polymerase II RPB7 subunit-like protein [Cryptomonas
paramecium]
Length = 175
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 97/171 (56%), Gaps = 4/171 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGA-GLI 59
MF+ L I L P Y + + + L + +EG G +G ++A+ ++ G I
Sbjct: 1 MFFICKLNQNIFLSPSYLKIDVKKRLTLSLVTTIEGIKLGIFGIIVAIIKLNKFWKKGKI 60
Query: 60 QPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQF 119
G F++Y + Y+AI F+ FKGEVLD+++T V ++G F E GPL F+S IP + ++
Sbjct: 61 ITGSPFILYNISYKAITFKVFKGEVLDSILTNVTELGFFCESGPLQIFVSKQFIPDEYEY 120
Query: 120 CPNSNPVCYKSVHGEV-VIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
N N C+++ + +I+ D +R++I+G R D+S +G++ + +LG
Sbjct: 121 -DNLNR-CFQNRFSRIKIIKNDTIVRVRIIGLRYDSSYTQGLGSIKEPHLG 169
>gi|27374378|gb|AAO01116.1| CG31155-PA [Drosophila pseudoobscura]
Length = 73
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/52 (94%), Positives = 49/52 (94%)
Query: 4 HISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIG 55
ISLEHEILLHPRYFGPQL ETVKQKLYSEVEGTCTGKYGFVIAVTTID IG
Sbjct: 22 QISLEHEILLHPRYFGPQLLETVKQKLYSEVEGTCTGKYGFVIAVTTIDQIG 73
>gi|70983610|ref|XP_747332.1| RNA polymerase II subunit 7 [Aspergillus fumigatus Af293]
gi|66844958|gb|EAL85294.1| RNA polymerase II subunit 7 [Aspergillus fumigatus Af293]
gi|159123662|gb|EDP48781.1| RNA polymerase II subunit 7 [Aspergillus fumigatus A1163]
Length = 139
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ I LHP YFGP + E + +L E EG CTG + FVI V + IG G +
Sbjct: 1 MFFLKEETKVISLHPSYFGPNMREYLINRLNEEEEGRCTGDH-FVICVMDMVDIGEGRVL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHH 111
PG G Y +KYRAI+++PF+GE +DA+VT V G+F GPLS FI+
Sbjct: 60 PGSGQAEYTIKYRAIIWKPFRGETVDAIVTSVKPTGIFTLAGPLSVFIARK 110
>gi|399950026|gb|AFP65682.1| RNA polymerase II RPB7 subunit-like protein [Chroomonas
mesostigmatica CCMP1168]
Length = 174
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 2/171 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTI-DSIGAGLI 59
M++ +L + + P+ F ++ +++ L S VEGT G +G +I +T I D+ G G
Sbjct: 1 MYFLCTLNQNLYVSPKLFNKKIKKSLVGNLLSSVEGTKAGPFGLIIMITEIFDNWGEGKF 60
Query: 60 QPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQF 119
G +Y + Y+A+ FR FKGEV DAVVTQV +G F+E G L F+S IP ++
Sbjct: 61 LIGCPSALYCLTYKALTFRAFKGEVFDAVVTQVTNLGFFSEAGFLQIFVSKKQIPIFFKY 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
N + + + I + IR+++V + ++S A+G++ LGL
Sbjct: 121 NQNKRTF-FNQLEQKESISTNSTIRVRVVSIKEESSFNQALGSIKGKKLGL 170
>gi|402467510|gb|EJW02798.1| hypothetical protein EDEG_00255 [Edhazardia aedis USNM 41457]
Length = 157
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 96/169 (56%), Gaps = 15/169 (8%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ L I + P + + ++ KLY V GTC+ + G +I V I +I G I
Sbjct: 1 MFFTGELFQTIYIPPFELSHNITQIIQTKLYKTVVGTCSQENGLIIMVLDILTIDGGKIS 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G VV+ V Y+A++ +P K E++DA + VN +G+F E GPL+ F+S I +
Sbjct: 61 T-TGHVVFKVNYKALLLKPIKSEIIDAPIVDVNAMGVFCEAGPLTIFVSSFHIKEKI--- 116
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
+K+ ++++D++R+KI+GT++D+ +AIGT+ +++LG
Sbjct: 117 -------WKNNE----LKKNDKLRIKIIGTKIDSKRPYAIGTIQEEHLG 154
>gi|403341587|gb|EJY70102.1| DNA-directed RNA polymerase II subunit Rpb7, putative [Oxytricha
trifallax]
gi|403342420|gb|EJY70530.1| DNA-directed RNA polymerase II subunit Rpb7, putative [Oxytricha
trifallax]
Length = 174
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 87/179 (48%), Gaps = 19/179 (10%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTI--DSIGAGL 58
MF+ +++E + + P G L +++K+ GTC+G YG++I + + I G
Sbjct: 1 MFFIVTIEKVVRIEPYELGKNLIYKIRKKIEDITVGTCSGTYGYIIQIIQMKPQDISDGR 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
IQ G V+Y VK++A+VFRPF+GEVLD V + G E GPL FIS I
Sbjct: 61 IQDTTGDVIYKVKFKALVFRPFRGEVLDGEVIDITDNGFMIESGPLKSFISTMRI----- 115
Query: 119 FCPNSNPVCYKSVHGEVVIQED--------DEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
N Y H + + ++D IR KI + D A+ +L D YLG
Sbjct: 116 ----QNQYAYDKSHNQFISKDDPNLRITVGSNIRYKIDQIKYDKGEYTAVSSLEDGYLG 170
>gi|294875732|ref|XP_002767446.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
gi|239869032|gb|EER00164.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
Length = 143
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 77/143 (53%), Gaps = 1/143 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKY-GFVIAVTTIDSIGAGLI 59
M++ ++ + + P GP + +L E+EG + + G ++ + I I
Sbjct: 1 MYFVLTDNKTVAMKPSDLGPMFDIRLDTQLRVELEGNLSKNHDGTIVHIINIVDKSKPKI 60
Query: 60 QPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQF 119
Q G G + V ++ I+FRPFK EV+D V++V+K+G FA GP+ F+S S+P D+ F
Sbjct: 61 QDGTGMALVNVVFQGIIFRPFKNEVMDCWVSEVSKLGFFAYFGPMKVFVSRSSMPDDVIF 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDE 142
+ PVCY VVIQ+D E
Sbjct: 121 RETATPVCYSDADQTVVIQQDSE 143
>gi|322705624|gb|EFY97208.1| putative DNA-directed RNA polymerase II chain Rpb7 [Metarhizium
anisopliae ARSEF 23]
Length = 128
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 79/169 (46%), Gaps = 45/169 (26%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ ++E + LHP YFG ++E V KL +VEGTC G Y ++I++ I G I
Sbjct: 1 MFFLYNMERRVTLHPSYFGRNMHELVTSKLLKDVEGTCAGSY-YIISIMDTFDISEGRIL 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + V YRA+V+RPFKGE F
Sbjct: 60 PGNGLAEFTVGYRAVVWRPFKGET----------------------------------FT 85
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
N + V H +R+KI+GTR + ++AIG++ +DYLG
Sbjct: 86 NNEDTVIEPGTH----------VRVKIIGTRTEVGEMWAIGSIKEDYLG 124
>gi|294939334|ref|XP_002782418.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
gi|239894024|gb|EER14213.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
Length = 149
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 77/143 (53%), Gaps = 1/143 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKY-GFVIAVTTIDSIGAGLI 59
M++ ++ + + P GP + +L E+EG + + G ++ + I I
Sbjct: 1 MYFVLTDNKTVAMKPSDLGPMFDIRLDTQLRVELEGNLSKNHDGTIVHIINIVDKSKPKI 60
Query: 60 QPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQF 119
Q G G + V ++ I+FRPFK EV+D V++V+K+G FA GP+ F+S S+P D+ F
Sbjct: 61 QDGTGMALVNVVFQGIIFRPFKNEVMDCWVSEVSKLGFFAYFGPMKVFVSRSSMPDDVIF 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDE 142
+ PVCY VVIQ+D E
Sbjct: 121 RETATPVCYSDADQTVVIQQDSE 143
>gi|162605728|ref|XP_001713379.1| RNA polymerase II RPB7 subunit-like protein [Guillardia theta]
gi|13794311|gb|AAK39688.1|AF083031_45 RNA polymerase II RPB7 subunit-like protein [Guillardia theta]
Length = 196
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 89/170 (52%), Gaps = 3/170 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGA-GLI 59
M+ ++L + + + QL T+ +L + EG G G +I + ID+ G I
Sbjct: 27 MYAIMTLNQNLFIPAKLLNNQLKSTLIAQLITLTEGLPFGNVGSIIMIINIDNQKLYGKI 86
Query: 60 QPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQF 119
PG V++ V ++A+V + FKGE++DA+V + G+FA G L+ FIS+ I D+
Sbjct: 87 LPGFSSVLFKVNFQAVVLKIFKGEIIDAIVKNITSFGIFASAGILNIFISNKFISQDL-- 144
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
+ + + + I+++D IR KI+ + + I AIG + D YLG
Sbjct: 145 ISQQSQTLFNFKNSTINIKKNDIIRCKILNLKYNTGSIQAIGCIDDKYLG 194
>gi|302783046|ref|XP_002973296.1| hypothetical protein SELMODRAFT_98932 [Selaginella moellendorffii]
gi|302789680|ref|XP_002976608.1| hypothetical protein SELMODRAFT_105350 [Selaginella moellendorffii]
gi|300155646|gb|EFJ22277.1| hypothetical protein SELMODRAFT_105350 [Selaginella moellendorffii]
gi|300159049|gb|EFJ25670.1| hypothetical protein SELMODRAFT_98932 [Selaginella moellendorffii]
Length = 175
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 93/173 (53%), Gaps = 6/173 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQ--LYETVKQKLYSEVEG-TCTGKYGFVIAVTTIDSIGAG 57
M++ ISL ++++HPR+ P + Q L ++E C+ ++G+ +A TT+ + G
Sbjct: 1 MWWEISLRRDVIVHPRHMDPSGGHRRWIIQTLLEDMEDLQCSREHGYYVAPTTLSKVSGG 60
Query: 58 LIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDM 117
+I+ G V Y V ++ +VF+ K E+++ + V + G A GP + HHS+ T
Sbjct: 61 MIRESGG-VSYKVDFKCMVFKLIKNEIVELEIENVKQSGAEASCGPYTAIFLHHSLMTGF 119
Query: 118 QFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
+ N N C+K+ G VVI + +R KI+G + G + T+ D +LG+
Sbjct: 120 VY-SNENGPCFKNSDG-VVISKGCAVRAKILGGQFMGDGFRCLATINDAHLGV 170
>gi|168006688|ref|XP_001756041.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692971|gb|EDQ79326.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 190
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 93/176 (52%), Gaps = 9/176 (5%)
Query: 1 MFYHISLEHEILLHPRYFGPQLY--ETVKQKLYSEVEG-TCTGKYGFVIAVTTIDSIGAG 57
MF+ + L +++ P+ G +L+ + ++L + + C+ ++GF + VTT++ + G
Sbjct: 1 MFFEVELRRLVVVEPQELGDELHTRRAMIRRLLKDFDAERCSEEHGFHVTVTTLEDVSPG 60
Query: 58 LIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDM 117
I+ G G V++ V ++ IVFRP + E+L+A VT V + G A G F+ +
Sbjct: 61 KIRSGTGSVIFWVTFKCIVFRPIRNEILEAEVTDVLERGFLAACGASRIFVPRKEM-DGF 119
Query: 118 QFCPNSNPVCYKSVHGE--VVIQEDDEIRLKIVGTRVD--ASGIFAIGTLMDDYLG 169
+F P ++ + Y H VI+ RLK+VGTR + I A GTL D LG
Sbjct: 120 EFRPGAS-LEYNEWHDSSGSVIKPKSMARLKVVGTRWEPKERTIMAAGTLNGDLLG 174
>gi|123975905|ref|XP_001330423.1| RNA polymerase Rpb7, N-terminal domain containing protein
[Trichomonas vaginalis G3]
gi|121896651|gb|EAY01797.1| RNA polymerase Rpb7, N-terminal domain containing protein
[Trichomonas vaginalis G3]
Length = 182
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 4/172 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ + LEH++ L P + +T++++L + EG G ++ +T I IG G +
Sbjct: 11 MFFEVELEHQLKLLPIFLSQGTSQTIEKQLKHQKEGQFMLGKGLILKITKIIEIGKGRVS 70
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G Y VK++A+V RP++ V+DA + +N+ + A GPL+ + + D F
Sbjct: 71 SRTGCASYSVKFKALVLRPYEDLVIDAKIMILNEFAIMANAGPLTVAVPKTLLEKDYDFE 130
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGT--RVDASGIFAIGTLMDDYLGL 170
P + + YK +G + IR+KI+ D I A G L+D LG+
Sbjct: 131 PET--LTYKQKNGGKTLGSKTVIRVKIITAVPHKDQIHISATGNLIDPILGV 180
>gi|47209336|emb|CAF94683.1| unnamed protein product [Tetraodon nigroviridis]
Length = 41
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/41 (87%), Positives = 38/41 (92%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGK 41
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGK
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGK 41
>gi|424813921|ref|ZP_18239099.1| DNA-directed RNA polymerase, rpoE [Candidatus Nanosalina sp.
J07AB43]
gi|339757537|gb|EGQ42794.1| DNA-directed RNA polymerase, rpoE [Candidatus Nanosalina sp.
J07AB43]
Length = 189
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 2/112 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + + I + P+ G L E++KQ L VEGT + + G V++V TI+SI G I+
Sbjct: 1 MYNRLDVADSIRVPPKNLGEDLEESIKQALKDNVEGTISKEAGVVLSVDTINSIEGGEIE 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLS--CFISH 110
P V Y +Y A+V+ P EV++ V + G F IGPL C +S
Sbjct: 61 PEDAGVHYETEYEAVVYEPEMKEVVNGEVVDITSFGAFIRIGPLDGLCHVSQ 112
>gi|302659535|ref|XP_003021456.1| DNA-directed RNA polymerase III complex subunit Rpc25
[Trichophyton verrucosum HKI 0517]
gi|291185357|gb|EFE40838.1| DNA-directed RNA polymerase III complex subunit Rpc25
[Trichophyton verrucosum HKI 0517]
Length = 104
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ LEH + LHP +FG + E + QKL +VEG CTG Y +++ V + I G I
Sbjct: 1 MFFIHFLEHVLTLHPSFFGSHVKEYLSQKLLDDVEGICTGDY-YIVCVMDMYDISEGKII 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVL 85
PG G Y + YRAIV++PFKGE +
Sbjct: 60 PGSGLAEYTIVYRAIVWKPFKGETV 84
>gi|297800772|ref|XP_002868270.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
gi|297314106|gb|EFH44529.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
Length = 178
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 79/135 (58%), Gaps = 6/135 (4%)
Query: 38 CTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
T + G+ +AVTT+D IG G I+ G V++PV + + F+ FKGE++ VV +V K G+
Sbjct: 42 ATKELGYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGV 101
Query: 98 FAEIGPL-SCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR-VDAS 155
F GP+ + ++S+ +P D ++ P NP+ IQ + +R+ ++G + ++A
Sbjct: 102 FMRCGPIENVYLSYTKMP-DYKYVPGENPIFMNEKTSR--IQVETTVRVVVIGIKWMEAE 158
Query: 156 GIF-AIGTLMDDYLG 169
F A+ +L DYLG
Sbjct: 159 REFQALASLEGDYLG 173
>gi|351724841|ref|NP_001238607.1| uncharacterized protein LOC100527862 [Glycine max]
gi|255633396|gb|ACU17055.1| unknown [Glycine max]
Length = 180
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 94/176 (53%), Gaps = 10/176 (5%)
Query: 1 MFYHISLEHEILLHPRYFGPQ---LYETVKQKLYSEVE-GTCTGKYGFVIAVTTIDSIGA 56
MF + L +++ P+ L+ + +L S+ T G+ +AVTT++ IG
Sbjct: 1 MFLKVQLHWNVIIAAENLQPEGLMLHRAIIVRLLSDFAVKKATKDLGYFLAVTTLEKIGE 60
Query: 57 GLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPT 115
G ++ G V++PV + I F+ FKGE+L+ VV +V K G+F GP+ + ++S+ +P
Sbjct: 61 GKVRQHTGDVLFPVVFNVITFKFFKGEILEGVVHKVLKHGVFMRCGPIENVYLSNLKMP- 119
Query: 116 DMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR-VDASGIF-AIGTLMDDYLG 169
D ++ P N + I +D +R ++GT+ ++A F A+ +L DYLG
Sbjct: 120 DYRYVPGENACFMNDKMSK--IGKDVTVRFSVIGTKWMEAEREFQALVSLEGDYLG 173
>gi|255563208|ref|XP_002522607.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
[Ricinus communis]
gi|223538083|gb|EEF39694.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
[Ricinus communis]
Length = 176
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 80/135 (59%), Gaps = 6/135 (4%)
Query: 38 CTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
T G+ +AVTT++SIG G ++ G V++PV + I F+ F+GE+L+ VV +V K G+
Sbjct: 42 ATKDLGYYLAVTTLESIGEGKVREHTGDVLFPVVFNGITFKIFRGEILEGVVHKVLKHGV 101
Query: 98 FAEIGPL-SCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR-VDAS 155
F GP+ + ++S +P D + P NPV + I++D +R ++GT+ ++A
Sbjct: 102 FIRCGPIENIYLSCMKMP-DYHYVPGENPVFLNDKTSK--IEKDVVVRFIVIGTKWLEAE 158
Query: 156 GIF-AIGTLMDDYLG 169
F A+ +L DYLG
Sbjct: 159 REFQALVSLEGDYLG 173
>gi|42566796|ref|NP_193202.2| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana]
gi|149944323|gb|ABR46204.1| At4g14660 [Arabidopsis thaliana]
gi|332658072|gb|AEE83472.1| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana]
Length = 178
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 78/135 (57%), Gaps = 6/135 (4%)
Query: 38 CTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
T + G+ +AVTT+D IG G I+ G V++PV + + F+ FKGE++ VV +V K G+
Sbjct: 42 ATKELGYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGV 101
Query: 98 FAEIGPL-SCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR-VDAS 155
F GP+ + ++S+ +P D ++ P NP+ IQ + +R+ ++G + ++
Sbjct: 102 FMRCGPIENVYLSYTKMP-DYKYIPGENPIFMNEKTSR--IQVETTVRVVVIGIKWMEVE 158
Query: 156 GIF-AIGTLMDDYLG 169
F A+ +L DYLG
Sbjct: 159 REFQALASLEGDYLG 173
>gi|2244822|emb|CAB10245.1| RNA polymerase II fifth largest subunit like protein [Arabidopsis
thaliana]
gi|7268172|emb|CAB78508.1| RNA polymerase II fifth largest subunit like protein [Arabidopsis
thaliana]
Length = 161
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 78/135 (57%), Gaps = 6/135 (4%)
Query: 38 CTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
T + G+ +AVTT+D IG G I+ G V++PV + + F+ FKGE++ VV +V K G+
Sbjct: 25 ATKELGYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGV 84
Query: 98 FAEIGPL-SCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR-VDAS 155
F GP+ + ++S+ +P D ++ P NP+ IQ + +R+ ++G + ++
Sbjct: 85 FMRCGPIENVYLSYTKMP-DYKYIPGENPIFMNEKTSR--IQVETTVRVVVIGIKWMEVE 141
Query: 156 GIF-AIGTLMDDYLG 169
F A+ +L DYLG
Sbjct: 142 REFQALASLEGDYLG 156
>gi|300121178|emb|CBK21559.2| unnamed protein product [Blastocystis hominis]
Length = 142
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 7 LEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDS-IGAGLIQPGQGF 65
+E+ + LHP+Y +L +T+K +LY EVEG G+V+ V +I S G GLI P GF
Sbjct: 1 MEYILSLHPKYLSRRLQDTIKTELYREVEGKYFPSIGYVLIVLSIPSDAGVGLIDPNTGF 60
Query: 66 VVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFI 108
+ +KY A+V+ P EV +VT+V + + GP+ I
Sbjct: 61 AEFKIKYNALVYSPIDNEVTYCIVTKVTPKALACKFGPVGNII 103
>gi|294495170|ref|YP_003541663.1| DNA-directed RNA polymerase, subunit E' [Methanohalophilus mahii
DSM 5219]
gi|292666169|gb|ADE36018.1| DNA-directed RNA polymerase, subunit E' [Methanohalophilus mahii
DSM 5219]
Length = 187
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 3/154 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L + + PR + +VK L +++EG K G V+A+T ID IG G I
Sbjct: 1 MYKRMKLVDTVRVAPRLLADDVRVSVKNALKTKLEGRVDKKIGSVVAITDIDEIGEGHIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
G G V Y + AI+F P EV++ V + + G F IG + + I D M +
Sbjct: 61 VGDGAVYYDATFEAIMFIPTLQEVIEGEVVETVEFGAFVSIGAMDGLLHVSQITDDFMSY 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ + K+V+ V+ E D +R +IV ++
Sbjct: 121 DGKNGRLISKNVNK--VLSEGDRVRARIVAVSIN 152
>gi|388498028|gb|AFK37080.1| unknown [Medicago truncatula]
Length = 180
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 93/176 (52%), Gaps = 10/176 (5%)
Query: 1 MFYHISLEHEILLHPRYFGP---QLYETVKQKLYSEVEGT-CTGKYGFVIAVTTIDSIGA 56
MF + L +++ P L + +L S+ T G+ +AVTT+D IG
Sbjct: 1 MFLKVQLPWNVIIAAENLKPGSLMLQRAILIRLLSDFAAKKATKDMGYFLAVTTLDKIGE 60
Query: 57 GLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPT 115
G ++ G V++PV + A+ F+ FKGEVL+ VV +V K G+F IGP+ + ++S +P
Sbjct: 61 GKVRQHTGDVLFPVVFNAVTFKIFKGEVLEGVVHKVLKHGVFMRIGPIENAYLSSSKMPG 120
Query: 116 DMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR-VDASGIF-AIGTLMDDYLG 169
+ + NP + I +D ++R+ ++GT+ ++A F A+ L DYLG
Sbjct: 121 YV-YVLGENPYFMNQKMPK--IAKDVKVRVVVIGTKWMEAEREFQALVGLEGDYLG 173
>gi|297737162|emb|CBI26363.3| unnamed protein product [Vitis vinifera]
Length = 242
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 81/135 (60%), Gaps = 6/135 (4%)
Query: 38 CTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
T + G+ +AVTT+++IG G ++ G V++PV + + F+ F+GE+LD VV +V K G+
Sbjct: 107 ATQELGYFLAVTTLENIGEGKVRQHSGDVLFPVVFSCVTFKLFRGEILDGVVHKVLKHGV 166
Query: 98 FAEIGPL-SCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR-VDAS 155
GP+ + ++S +P D ++ P NPV + I++D +R ++GT+ ++A
Sbjct: 167 ILRCGPVENIYLSCQKMP-DYRYVPGENPVFLNEKLSK--IEKDVVVRFIVMGTKWLEAE 223
Query: 156 GIF-AIGTLMDDYLG 169
F A+ +L DYLG
Sbjct: 224 REFQALVSLEGDYLG 238
>gi|225432916|ref|XP_002284221.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Vitis
vinifera]
gi|147822056|emb|CAN61549.1| hypothetical protein VITISV_043525 [Vitis vinifera]
Length = 177
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 81/134 (60%), Gaps = 6/134 (4%)
Query: 39 TGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMF 98
T + G+ +AVTT+++IG G ++ G V++PV + + F+ F+GE+LD VV +V K G+
Sbjct: 43 TQELGYFLAVTTLENIGEGKVRQHSGDVLFPVVFSCVTFKLFRGEILDGVVHKVLKHGVI 102
Query: 99 AEIGPL-SCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR-VDASG 156
GP+ + ++S +P D ++ P NPV + I++D +R ++GT+ ++A
Sbjct: 103 LRCGPVENIYLSCQKMP-DYRYVPGENPVFLNEKLSK--IEKDVVVRFIVMGTKWLEAER 159
Query: 157 IF-AIGTLMDDYLG 169
F A+ +L DYLG
Sbjct: 160 EFQALVSLEGDYLG 173
>gi|224102153|ref|XP_002312568.1| predicted protein [Populus trichocarpa]
gi|222852388|gb|EEE89935.1| predicted protein [Populus trichocarpa]
Length = 176
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 95/176 (53%), Gaps = 10/176 (5%)
Query: 1 MFYHISLEHEILLHPRYF---GPQLYETVKQKLYSE-VEGTCTGKYGFVIAVTTIDSIGA 56
MF + L +++ G L ++ +L + + T G+ +AV+T++SIG
Sbjct: 1 MFLKVQLPWNVIIPAENLDAKGLMLQRSIVVRLLDDFAKKGATKDLGYYLAVSTLESIGE 60
Query: 57 GLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPT 115
G ++ G V++PV + I F+ F+GE+LD +V +V K G+ GP+ + ++S +P
Sbjct: 61 GKVRQHTGDVLFPVVFSGITFKIFRGEILDGIVHKVLKHGVLLRCGPIENIYLSCMKMP- 119
Query: 116 DMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR-VDASGIF-AIGTLMDDYLG 169
D ++ P NPV + I++D +R ++GT+ ++A F A+ +L DYLG
Sbjct: 120 DYRYVPGENPVFLNDKTSK--IEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLG 173
>gi|154149792|ref|YP_001403410.1| DNA-directed RNA polymerase subunit E' [Methanoregula boonei 6A8]
gi|153998344|gb|ABS54767.1| DNA-directed RNA polymerase [Methanoregula boonei 6A8]
Length = 213
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 69/132 (52%), Gaps = 2/132 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+Y ++LE ++ + P G +L + + + L ++EG+ + G IAVT ++ +G G I
Sbjct: 1 MYYKMTLEDKVRVPPNRLGEKLDKVILEVLQEQLEGSIDKELGVFIAVTKVEHVGEGEIV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
PG G V Y VK+ +V R EV++ +V + G F +GP+ + I + + F
Sbjct: 61 PGDGGVYYDVKFEGLVLRLALQEVIEGIVVETTSFGAFISLGPIDAMLHVSQISDEYINF 120
Query: 120 C-PNSNPVCYKS 130
N+ +C S
Sbjct: 121 DEKNARLICQDS 132
>gi|217074784|gb|ACJ85752.1| unknown [Medicago truncatula]
Length = 180
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 92/176 (52%), Gaps = 10/176 (5%)
Query: 1 MFYHISLEHEILLHPRYFGP---QLYETVKQKLYSEVEGT-CTGKYGFVIAVTTIDSIGA 56
MF + L +++ P L + +L S+ T G+ +AVTT+D IG
Sbjct: 1 MFLKVQLPWNVIIAAENLKPGSLMLQRAILIRLLSDFAAKKATKDMGYFLAVTTLDKIGE 60
Query: 57 GLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPT 115
G ++ G V++PV + A+ F+ FKGEVL+ VV +V K G+F IGP+ + ++S +P
Sbjct: 61 GKVRQHTGDVLFPVVFNAVTFKIFKGEVLEGVVHKVLKHGVFMRIGPIENAYLSSSKMPG 120
Query: 116 DMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR-VDASGIF-AIGTLMDDYLG 169
+ + NP + I +D + R+ ++GT+ ++A F A+ L DYLG
Sbjct: 121 YV-YVLGENPYFMNQKMPK--IAKDVKARVVVIGTKWMEAEREFQALVGLEGDYLG 173
>gi|218196310|gb|EEC78737.1| hypothetical protein OsI_18944 [Oryza sativa Indica Group]
Length = 175
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 95/176 (53%), Gaps = 11/176 (6%)
Query: 1 MFYHISLEHEILLHPRYFGPQ---LYETVKQKLYSEVEGTCTGK-YGFVIAVTTIDSIGA 56
+F + + +L+ P P+ L + V L E+ K +G+ IAV+ + +I
Sbjct: 2 VFLKVDMSWNVLISPSELSPKGLLLRKAVIVSLLEEIANRKASKDHGYYIAVSELKAISE 61
Query: 57 GLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPT 115
G ++ G V++PV + I +P KGE+L V ++ K G+F + GP+ S F+S ++ +
Sbjct: 62 GKVRELTGDVLFPVTFTCITQKPTKGEILVGSVDKILKHGVFLKSGPIESIFLSEKTL-S 120
Query: 116 DMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR-VDASGIFAI-GTLMDDYLG 169
D ++ NP+ + + H + +++D +R K++G R ++A F I TL DYLG
Sbjct: 121 DYKYIGGENPM-FMNDHSK--LEKDTAVRFKVMGFRWMEADRQFQILATLAGDYLG 173
>gi|91774198|ref|YP_566890.1| DNA-directed RNA polymerase subunit E' [Methanococcoides burtonii
DSM 6242]
gi|91713213|gb|ABE53140.1| DNA-directed RNA polymerase subunit E' [Methanococcoides burtonii
DSM 6242]
Length = 192
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 1/149 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ I + PR G + +VK L ++EG G ++A+T I+ +G G I
Sbjct: 1 MYKRMKLKDTIRVAPRLLGEDVGVSVKDALKEKLEGRVDKALGSIVAITDIEEVGEGHIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G V Y V + AI+F P EV++ +V + + G F IG + + I D
Sbjct: 61 VGDGAVYYDVIFEAIIFIPQLQEVIEGLVVETVEFGAFVSIGAMDGLLHVSQITDDFMSY 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
N V G + E D++R +IV
Sbjct: 121 DGKNGRLISKV-GNRTLSEGDKVRARIVA 148
>gi|115462207|ref|NP_001054703.1| Os05g0157100 [Oryza sativa Japonica Group]
gi|45267865|gb|AAS55764.1| putative RNA polymerase II [Oryza sativa Japonica Group]
gi|113578254|dbj|BAF16617.1| Os05g0157100 [Oryza sativa Japonica Group]
gi|125550915|gb|EAY96624.1| hypothetical protein OsI_18537 [Oryza sativa Indica Group]
gi|215692867|dbj|BAG88287.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222630264|gb|EEE62396.1| hypothetical protein OsJ_17187 [Oryza sativa Japonica Group]
Length = 175
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 95/176 (53%), Gaps = 11/176 (6%)
Query: 1 MFYHISLEHEILLHPRYFGPQ---LYETVKQKLYSEVEGTCTGK-YGFVIAVTTIDSIGA 56
+F + + +L+ P PQ L + V +L ++ K +G+ IAV+ + +I
Sbjct: 2 VFLKVEMSLNVLISPSQLSPQGLLLRKAVIVRLLEDIANRKASKDHGYYIAVSELKAISE 61
Query: 57 GLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPT 115
G ++ G V++PV + I +P KGEVL V ++ K G+F + GP+ S F+S ++ +
Sbjct: 62 GKVRELTGDVLFPVTFTCITQKPMKGEVLVGSVDKILKHGIFLKSGPIESIFLSEKTM-S 120
Query: 116 DMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR-VDASGIFA-IGTLMDDYLG 169
D ++ N V + + H + +++D +R K++G R ++A F + TL DYLG
Sbjct: 121 DFKYIGGENAV-FMNEHSK--LEKDTVVRFKVMGFRWMEADRQFQLLATLAGDYLG 173
>gi|449465372|ref|XP_004150402.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449522228|ref|XP_004168129.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
Length = 175
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 96/176 (54%), Gaps = 11/176 (6%)
Query: 1 MFYHISLEHEILLHPRYF---GPQLYETVKQKLYSE-VEGTCTGKYGFVIAVTTIDSIGA 56
MF + L +++ G L ++ +L E T G+ +AVTT+++IG
Sbjct: 1 MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60
Query: 57 GLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPT 115
G ++ G V++PV + I F+ ++GE+L+ VV +V K G+F GP+ + ++S+ +P
Sbjct: 61 GKVRQ-TGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMP- 118
Query: 116 DMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR-VDASGIF-AIGTLMDDYLG 169
D ++ P NPV + I++D +R ++GT+ ++A F A+ +L DYLG
Sbjct: 119 DYRYVPGENPVFLNDKLSK--IEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLG 172
>gi|118487294|gb|ABK95475.1| unknown [Populus trichocarpa]
Length = 176
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 4/134 (2%)
Query: 38 CTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
T G+ +AV+T++SIG G ++ G V++PV + I F+ FKGE+L+ VV +V K G+
Sbjct: 42 ATKDLGYYLAVSTLESIGEGKVRQHTGDVLFPVVFSGITFKIFKGEILEGVVHKVLKHGV 101
Query: 98 FAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR-VDASG 156
GP+ D ++ P NPV + I++D +R ++GT+ ++A
Sbjct: 102 LLRCGPIENIYLSSMKMLDYRYVPGENPVFLNDKTSK--IEKDVVVRFVVLGTKWLEAER 159
Query: 157 IF-AIGTLMDDYLG 169
F A+ +L DYLG
Sbjct: 160 EFQALVSLEGDYLG 173
>gi|224107923|ref|XP_002314654.1| predicted protein [Populus trichocarpa]
gi|222863694|gb|EEF00825.1| predicted protein [Populus trichocarpa]
Length = 193
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 4/134 (2%)
Query: 38 CTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
T G+ +AV+T++SIG G ++ G V++PV + I F+ FKGE+L+ VV +V K G+
Sbjct: 59 ATKDLGYYLAVSTLESIGEGKVRQHTGDVLFPVVFSGITFKIFKGEILEGVVHKVLKHGV 118
Query: 98 FAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR-VDASG 156
GP+ D ++ P NPV + I++D +R ++GT+ ++A
Sbjct: 119 LLRCGPIENIYLSSMKMLDYRYVPGENPVFLNDKTSK--IEKDVVVRFVVLGTKWLEAER 176
Query: 157 IF-AIGTLMDDYLG 169
F A+ +L DYLG
Sbjct: 177 EFQALVSLEGDYLG 190
>gi|357441001|ref|XP_003590778.1| DNA-directed RNA polymerase II subunit RPB7 [Medicago truncatula]
gi|355479826|gb|AES61029.1| DNA-directed RNA polymerase II subunit RPB7 [Medicago truncatula]
Length = 173
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 79/135 (58%), Gaps = 6/135 (4%)
Query: 38 CTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
T G+ +AVTT+D IG G ++ G V++PV + A+ F+ FKGEVL+ VV +V K G+
Sbjct: 35 ATKDMGYFLAVTTLDKIGEGKVRQHTGDVLFPVVFNAVTFKIFKGEVLEGVVHKVLKHGV 94
Query: 98 FAEIGPL-SCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR-VDAS 155
F IGP+ + ++S +P + + NP + I +D ++R+ ++GT+ ++A
Sbjct: 95 FMRIGPIENAYLSSSKMPGYV-YVLGENPYFMNQKMPK--IAKDVKVRVVVIGTKWMEAE 151
Query: 156 GIF-AIGTLMDDYLG 169
F A+ L DYLG
Sbjct: 152 REFQALVGLEGDYLG 166
>gi|307352259|ref|YP_003893310.1| DNA-directed RNA polymerase [Methanoplanus petrolearius DSM 11571]
gi|307155492|gb|ADN34872.1| DNA-directed RNA polymerase [Methanoplanus petrolearius DSM 11571]
Length = 189
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 64/139 (46%), Gaps = 8/139 (5%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+Y + L ++ + P G L V +L ++EG+ G IAVT I IG G I
Sbjct: 1 MYYKMKLIDKVRVPPNRLGEDLSSVVLDELQQQLEGSIDKDIGIFIAVTEIHDIGEGDII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G V Y V++ A+V R EV++ V + G F +GP+ + I D
Sbjct: 61 PGDGAVYYHVEFDAVVLRLAMQEVIEGEVVETTSFGAFVSLGPIDAMLHVSQISDDF--- 117
Query: 121 PNSNPVCYKSVHGEVVIQE 139
+ Y +G +V QE
Sbjct: 118 -----INYDEKNGRLVCQE 131
>gi|326527317|dbj|BAK04600.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 175
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 93/175 (53%), Gaps = 11/175 (6%)
Query: 2 FYHISLEHEILLHPRYFGPQ---LYETVKQKLYSEVEG-TCTGKYGFVIAVTTIDSIGAG 57
F + +L+ P P+ L +++ +L ++ + ++G+ IAV + +I G
Sbjct: 3 FLQEEMSWNVLISPDQLSPKGLLLRKSIIVRLLEDITNRKASNEHGYYIAVNELKTISEG 62
Query: 58 LIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTD 116
++ G V++PV + I RP KGE+L V ++ K G+F + GP+ S F+S S+ +D
Sbjct: 63 KVRELTGDVLFPVTFTCITQRPMKGEILVGSVEKILKHGVFLKSGPIESIFLSEKSM-SD 121
Query: 117 MQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR-VDASGIFA-IGTLMDDYLG 169
++ NP+ K H + ++ D +R K++G R ++A F + +L D+LG
Sbjct: 122 YKYMGGENPMFMKD-HSK--LERDTAVRFKVMGFRWMEAERQFQLLASLAGDFLG 173
>gi|298674525|ref|YP_003726275.1| DNA-directed RNA polymerase [Methanohalobium evestigatum Z-7303]
gi|298287513|gb|ADI73479.1| DNA-directed RNA polymerase [Methanohalobium evestigatum Z-7303]
Length = 188
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L + + P G +VK L +++EG K G ++A+T I+SIG G I
Sbjct: 1 MYKKMKLVDTVRISPDRLGDDETLSVKDALKNKLEGRIDKKNGSIVAITDIESIGEGHII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G V Y V ++AIVF P EV++ V ++ G F G + + I D
Sbjct: 61 MGDGAVYYDVTFKAIVFMPMMQEVIEGKVVEIVDFGAFISFGAMDGLLHVSQITDDFMSY 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
N S + + E D +R +IV ++
Sbjct: 121 DGKNARLI-SKNSNRALAEGDYLRARIVAVSIN 152
>gi|336476432|ref|YP_004615573.1| DNA-directed RNA polymerase [Methanosalsum zhilinae DSM 4017]
gi|335929813|gb|AEH60354.1| DNA-directed RNA polymerase [Methanosalsum zhilinae DSM 4017]
Length = 188
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L + + P G + + VK +L +EG K G ++AVT ++ IG G I
Sbjct: 1 MYKRMKLIDTVRIAPDLLGEDVKKCVKNELKKNLEGRVDKKIGAIVAVTNVEKIGEGHIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + Y V + AI F P EV++ V ++ + G F IGP+ + I +
Sbjct: 61 VGDGAIYYDVTFEAITFLPQIQEVIEGQVVEIVEFGAFVSIGPMDGLLHVSQITDEFMSY 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
N G+ + E D IR +IV ++
Sbjct: 121 DGKNGRLISKNSGK-ALSEGDRIRGRIVAVSIN 152
>gi|126180182|ref|YP_001048147.1| DNA-directed RNA polymerase subunit E' [Methanoculleus marisnigri
JR1]
gi|125862976|gb|ABN58165.1| DNA-directed RNA polymerase, subunit E' [Methanoculleus marisnigri
JR1]
Length = 188
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 11/158 (6%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+Y ++LE ++ + P G L + + L ++EG+ + G IAVT I ++G G +
Sbjct: 1 MYYKMTLEDKVRVPPHRLGEDLEKVILNVLQEQLEGSIAKEIGIFIAVTNILNVGEGELI 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCF-----ISHHSIPT 115
PG G V Y V++ A V R EV++ V + G F +GP+ IS I
Sbjct: 61 PGDGAVYYDVRFEAAVLRLALQEVIEGQVVETTSFGAFVSLGPIDAMLHVSQISDEYINY 120
Query: 116 DMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
D + N VC S I D +R +IV ++
Sbjct: 121 DEK---NGRLVCQDSKRA---ITVGDGVRARIVALSLN 152
>gi|395646854|ref|ZP_10434714.1| DNA-directed RNA polymerase [Methanofollis liminatans DSM 4140]
gi|395443594|gb|EJG08351.1| DNA-directed RNA polymerase [Methanofollis liminatans DSM 4140]
Length = 191
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 5/150 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+Y ++L+ ++ + P G L + +L ++EG+ + G IAVT I+++G G I
Sbjct: 1 MYYRVTLDDKVRVPPHRLGEDLRNVILDELQKQLEGSIDKEIGIFIAVTKINNVGEGEIV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
G G V Y V + A+V R EV++ V + G F +GP+ + I D + +
Sbjct: 61 HGDGAVYYDVTFEALVLRLVLQEVIEGEVVETTSFGAFVSLGPIDAMLHVSQISDDYIAY 120
Query: 120 CPNSNPV-CYKSVHGEVVIQEDDEIRLKIV 148
+N + C ++ IQ + IR ++V
Sbjct: 121 DEKNNTLNCQETKRS---IQVGEAIRCRVV 147
>gi|410670177|ref|YP_006922548.1| DNA-directed RNA polymerase subunit E' [Methanolobus psychrophilus
R15]
gi|409169305|gb|AFV23180.1| DNA-directed RNA polymerase subunit E' [Methanolobus psychrophilus
R15]
Length = 188
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 3/154 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L I + P G + VK L ++EG G ++A+T ID+IG G I
Sbjct: 1 MYKKMRLADTIRVAPNLLGGDVRANVKNALRDKLEGRIDKALGAIVAITEIDAIGEGHIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
G G V Y + AIVF P EV++ V + G F IG + + I D M +
Sbjct: 61 VGDGAVYYDATFDAIVFVPVIQEVIEGEVVETVDFGAFISIGAMDGLLHVSQITDDFMSY 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ + KS G + E D +R ++V ++
Sbjct: 121 DGKNGRLVSKS--GGRSLGEGDRVRARVVAVSIN 152
>gi|388504534|gb|AFK40333.1| unknown [Lotus japonicus]
Length = 180
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 4/134 (2%)
Query: 38 CTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
T G+ AVTT+D +G G ++ G V++PV + + F+ FKGE+L+ VV +V K G+
Sbjct: 42 ATKDLGYFTAVTTLDKVGEGKVRQHTGDVLFPVVFNGVTFKLFKGEILEGVVHKVLKHGV 101
Query: 98 FAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR-VDASG 156
F GP+ + D ++ P N Y I +D IR ++GT+ ++A
Sbjct: 102 FLRCGPIEHVYLSNMKMADYRYFPGEN--AYFMNEKASKIAKDVTIRFVVIGTKWMEAER 159
Query: 157 IF-AIGTLMDDYLG 169
F A+ +L DYLG
Sbjct: 160 EFQALVSLEGDYLG 173
>gi|219851265|ref|YP_002465697.1| DNA-directed RNA polymerase subunit E' [Methanosphaerula palustris
E1-9c]
gi|219545524|gb|ACL15974.1| DNA-directed RNA polymerase [Methanosphaerula palustris E1-9c]
Length = 199
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 9/152 (5%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+Y + LE ++ + P G L + + L ++EG+ + G IAVT + +G G +
Sbjct: 1 MYYKLLLEDKVRVPPHRLGEDLIKVILDVLQEQLEGSIDKEIGIFIAVTKVIEVGEGEMV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G V Y VK+ A+ R EVL+ VV + G F +GP+ + H S +D +F
Sbjct: 61 PGDGAVYYDVKFEALGLRLSLQEVLEGVVVETTTFGAFVSLGPIDAML-HVSQISD-EFI 118
Query: 121 ----PNSNPVCYKSVHGEVVIQEDDEIRLKIV 148
N+ +C S I D IR ++V
Sbjct: 119 NYDEKNARLICKDSGR---FIGVGDRIRARVV 147
>gi|432332214|ref|YP_007250357.1| DNA-directed RNA polymerase subunit E' [Methanoregula formicicum
SMSP]
gi|432138923|gb|AGB03850.1| DNA-directed RNA polymerase subunit E' [Methanoregula formicicum
SMSP]
Length = 213
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M++ + LE ++ + P+ G L + + L ++EG+ + G I VT + +G G +
Sbjct: 1 MYHKLMLEDKVRVPPQRLGENLEKVILDVLQEQLEGSIDKEIGIFICVTKVTDVGEGELV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCF-----ISHHSIPT 115
PG G V Y VK+ A+V R EV++ VV + G F +GP+ IS I
Sbjct: 61 PGDGGVYYDVKFEALVLRLALQEVIEGVVVETTSFGAFVSLGPIDAMLHVSQISDEYINY 120
Query: 116 DMQFCPNSNPVCYKS 130
D + N+ +C +S
Sbjct: 121 DEK---NARLICQES 132
>gi|431913243|gb|ELK14925.1| Citrate lyase subunit beta-like protein, mitochondrial [Pteropus
alecto]
Length = 133
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 42/52 (80%), Gaps = 1/52 (1%)
Query: 87 AVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSN-PVCYKSVHGEVVI 137
AV +V+KVG+F +IGP+SCFIS H IP++M+F PNSN P CYK++ ++VI
Sbjct: 82 AVNKKVSKVGLFTDIGPMSCFISQHCIPSEMEFEPNSNPPCCYKTLDEDIVI 133
>gi|20092492|ref|NP_618567.1| DNA-directed RNA polymerase subunit E' [Methanosarcina acetivorans
C2A]
gi|19917756|gb|AAM07047.1| DNA-directed RNA polymerase, subunit E [Methanosarcina acetivorans
C2A]
Length = 194
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L + + P G ++ T+K L ++EG K G ++AV ID +G G I
Sbjct: 1 MYKLMKLIDTVRIPPTLLGEEIMPTIKNALREKLEGQVDKKLGSLVAVYNIDEVGEGHIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G V Y V + AI+F P E+++ V + G+F +GP+ + H S TD
Sbjct: 61 VGDGAVYYDVTFEAIMFIPELQEIIEGEVVEAVGFGVFVGMGPMDGLL-HVSQITDDFIS 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
++ + +G I E D +R +IV ++
Sbjct: 120 YDAKNARLVTKNGGKSIAEGDHVRARIVAVSIN 152
>gi|21226698|ref|NP_632620.1| DNA-directed RNA polymerase subunit E' [Methanosarcina mazei Go1]
gi|20904984|gb|AAM30292.1| DNA-directed RNA polymerase subunit E' [Methanosarcina mazei Go1]
Length = 194
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L + + P G ++ T+K L ++EG K G ++AV ID +G G I
Sbjct: 1 MYKLMKLVDTVRIPPTLLGEEIMPTIKNALREKLEGQVDKKLGSLVAVYNIDEVGEGHIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G V Y V + AI+F P E+++ V + G+F +GP+ + H S TD
Sbjct: 61 VGDGAVYYDVTFEAIMFYPDLQEIIEGEVVEAVGFGVFIGMGPMDGLL-HVSQITDDFIS 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
++ + G I E D +R +IV ++
Sbjct: 120 YDAKNARLVTKSGGKSIAEGDHVRARIVAVSIN 152
>gi|448319540|ref|ZP_21509036.1| DNA-directed RNA polymerase subunit E' [Natronococcus amylolyticus
DSM 10524]
gi|445607533|gb|ELY61413.1| DNA-directed RNA polymerase subunit E' [Natronococcus amylolyticus
DSM 10524]
Length = 189
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + P+ G + VKQ L ++EG + G V++VT + IG G +
Sbjct: 1 MYKRVKLKDTVEVPPKALGDVSPKLVKQLLQDKLEGRMDEQVGSVVSVTQVHDIGEGAVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y ++ A+ F P EV+D + +V + G F IGP+ + H S +D
Sbjct: 61 PNKPGVYYEAEFDAVTFDPDMQEVVDGTIVEVVEFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + DD +R +IV +D
Sbjct: 120 FDGENQQLASNESNRTLGVDDAVRARIVTKSID 152
>gi|448315453|ref|ZP_21505101.1| DNA-directed RNA polymerase subunit E' [Natronococcus jeotgali DSM
18795]
gi|445611626|gb|ELY65373.1| DNA-directed RNA polymerase subunit E' [Natronococcus jeotgali DSM
18795]
Length = 189
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L + + P+ G + VKQ L ++EG + G V+++T + IG G +
Sbjct: 1 MYKRVRLTDTVEVPPKALGDVSPKLVKQLLQDKLEGRMDEEVGSVVSITEVHDIGEGAVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P Q V Y ++ A+ F P EV+D + +V + G F IGP+ + H S +D
Sbjct: 61 PNQPGVYYEAEFDAVTFDPDMQEVVDGTIVEVVEFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + DD +R +IV +D
Sbjct: 120 FDGENQQLASNESNRTLGVDDAVRARIVTKSID 152
>gi|386002591|ref|YP_005920890.1| DNA-directed RNA polymerase subunit E' [Methanosaeta harundinacea
6Ac]
gi|357210647|gb|AET65267.1| DNA-directed RNA polymerase, subunit E' [Methanosaeta harundinacea
6Ac]
Length = 190
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 1/148 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + LE + + P G L E V+ L ++ E G V+AV +D IG G I
Sbjct: 1 MYKKMKLEGIVRIPPGQMGDPLEEAVEMALRNKYEARVDKTLGTVVAVLGVDDIGEGRIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G V Y + AIVF+P E+++ V ++ K G F IGP + H S T+
Sbjct: 61 AGDGAVYYDANFDAIVFKPEMQEIVEGEVVEIVKFGAFIGIGPFDGLL-HVSQITNEYIS 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIV 148
+ S + E D +R +I+
Sbjct: 120 YDEKNSRLASKDSNKSLGEGDRVRARII 147
>gi|397780584|ref|YP_006545057.1| DNA-directed RNA polymerase subunit E' [Methanoculleus bourgensis
MS2]
gi|396939086|emb|CCJ36341.1| DNA-directed RNA polymerase subunit E' [Methanoculleus bourgensis
MS2]
Length = 189
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 8/135 (5%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M++ ++LE ++ + P G L + L ++EG+ + G IAVT + IG G +
Sbjct: 1 MYFKMTLEDKVRVPPHRLGEDLDAVILNVLQEQLEGSIAKEIGIFIAVTKVLDIGEGELI 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCF-----ISHHSIPT 115
PG G V Y V++ A+V R EV++ V + G F +GP+ IS I
Sbjct: 61 PGDGAVYYDVRFEAVVLRLALQEVIEGEVVETTSFGAFISLGPIDAMLHVSQISDEYINY 120
Query: 116 DMQFCPNSNPVCYKS 130
D + N +C S
Sbjct: 121 DEK---NGRLICQDS 132
>gi|355571472|ref|ZP_09042724.1| DNA-directed RNA polymerase [Methanolinea tarda NOBI-1]
gi|354825860|gb|EHF10082.1| DNA-directed RNA polymerase [Methanolinea tarda NOBI-1]
Length = 196
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 8/135 (5%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+Y + + ++ + P G +L + L +EG+ + G IAVT + +IG G I
Sbjct: 1 MYYKMEMSDKVRVPPHRMGEELSRVILDVLQEHLEGSIDKEIGIFIAVTRVITIGEGEIV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCF-----ISHHSIPT 115
PG G + Y V + A+V R EV++ +V + G F +GP+ IS I
Sbjct: 61 PGDGAIYYDVDFEAVVLRLSLQEVIEGLVVETTSFGAFVSLGPIDAMLHVSQISDEYINY 120
Query: 116 DMQFCPNSNPVCYKS 130
D + N+ +C S
Sbjct: 121 DEK---NARLICQDS 132
>gi|47187492|emb|CAG14887.1| unnamed protein product [Tetraodon nigroviridis]
Length = 39
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/37 (81%), Positives = 35/37 (94%)
Query: 134 EVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
++VIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct: 1 DIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 37
>gi|222630667|gb|EEE62799.1| hypothetical protein OsJ_17602 [Oryza sativa Japonica Group]
Length = 796
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 46/174 (26%), Positives = 93/174 (53%), Gaps = 10/174 (5%)
Query: 1 MFYHISLEHEILLHPRYFGPQ---LYETVKQKLYSEVEGTCTGK-YGFVIAVTTIDSIGA 56
+F + + +L+ P P+ L + V L E+ K +G+ IAV+ + +I
Sbjct: 2 VFLKVDMSWNVLISPSELSPKGLLLRKAVIVSLLEEIANRKASKDHGYYIAVSELKAISE 61
Query: 57 GLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPT 115
G ++ G V++PV + I +P KGE+L V ++ K G+F + GP+ S F+S ++ +
Sbjct: 62 GKVRELTGDVLFPVTFTCITQKPTKGEILVGSVDKILKHGVFLKSGPIESIFLSEKTL-S 120
Query: 116 DMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR-VDASGIFAIGTLMDDYL 168
D ++ NP+ + + H + +++D +R K++G R ++A F I + +++
Sbjct: 121 DYKYIGGENPM-FMNDHSK--LEKDTAVRFKVMGFRWMEADRQFQILATLAEFI 171
>gi|452209179|ref|YP_007489293.1| DNA-directed RNA polymerase subunit E' [Methanosarcina mazei Tuc01]
gi|452099081|gb|AGF96021.1| DNA-directed RNA polymerase subunit E' [Methanosarcina mazei Tuc01]
Length = 190
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 1/139 (0%)
Query: 15 PRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRA 74
P G ++ T+K L ++EG K G ++AV ID +G G I G G V Y V + A
Sbjct: 11 PTLLGEEIMPTIKNALREKLEGQVDKKLGSLVAVYNIDEVGEGHILVGDGAVYYDVTFEA 70
Query: 75 IVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGE 134
I+F P E+++ V + G+F +GP+ + H S TD ++ + +G
Sbjct: 71 IMFYPDLQEIIEGEVVEAVGFGVFIGMGPMDGLL-HVSQITDDFISYDAKNARLVTKNGG 129
Query: 135 VVIQEDDEIRLKIVGTRVD 153
I E D +R +IV ++
Sbjct: 130 KSIAEGDHVRARIVAVSIN 148
>gi|57863806|gb|AAS98454.2| putative receptor kinase [Oryza sativa Japonica Group]
Length = 715
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 43/156 (27%), Positives = 84/156 (53%), Gaps = 9/156 (5%)
Query: 1 MFYHISLEHEILLHPRYFGPQ---LYETVKQKLYSEVEGTCTGK-YGFVIAVTTIDSIGA 56
+F + + +L+ P P+ L + V L E+ K +G+ IAV+ + +I
Sbjct: 37 VFLKVDMSWNVLISPSELSPKGLLLRKAVIVSLLEEIANRKASKDHGYYIAVSELKAISE 96
Query: 57 GLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPT 115
G ++ G V++PV + I +P KGE+L V ++ K G+F + GP+ S F+S ++ +
Sbjct: 97 GKVRELTGDVLFPVTFTCITQKPTKGEILVGSVDKILKHGVFLKSGPIESIFLSEKTL-S 155
Query: 116 DMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR 151
D ++ NP+ + + H + +++D +R K++G R
Sbjct: 156 DYKYIGGENPM-FMNDHSK--LEKDTAVRFKVMGFR 188
>gi|74025878|ref|XP_829505.1| RNA polymerase-like protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834891|gb|EAN80393.1| RNA polymerase-like protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|261335510|emb|CBH18504.1| RNA polymerase subunit, putative [Trypanosoma brucei gambiense
DAL972]
Length = 190
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 87/188 (46%), Gaps = 19/188 (10%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGT---------------CTGKYGFV 45
MFY + LE I + P L+ +++ L VEGT T +
Sbjct: 1 MFYKMKLERNIKVEPHLLERTLHRHLEEYLRKAVEGTPLHLSLGNALRSGLARTNQNSSA 60
Query: 46 IAVTTIDSIGAGLIQP---GQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEI- 101
+ + +D + ++ G V + VKY +VF+ +GEV+D +V+ V + G + ++
Sbjct: 61 VIIAVLDILNTSSLEGRVLDDGSVSFFVKYEGLVFKLHRGEVIDVIVSSVEREGWWGDVM 120
Query: 102 GPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIG 161
G +IS + + + + + + G ++E + +R+++V + G+ A+G
Sbjct: 121 GVGRMYISRGQMGNEWVYESDGMRGIWITKDGARSVKEGEIVRVRVVAETPQSEGVLAVG 180
Query: 162 TLMDDYLG 169
+++ +YLG
Sbjct: 181 SMVGNYLG 188
>gi|435847673|ref|YP_007309923.1| DNA-directed RNA polymerase subunit E' [Natronococcus occultus SP4]
gi|433673941|gb|AGB38133.1| DNA-directed RNA polymerase subunit E' [Natronococcus occultus SP4]
Length = 189
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L I + P+ G + VKQ L ++EG + G V+++T + IG G +
Sbjct: 1 MYKRVRLTDTIEVPPKALGDVSPKLVKQLLQDKLEGRMDEEVGSVVSITEVHDIGEGAVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y ++ A+ F P EV+D + +V + G F IGP+ + H S +D
Sbjct: 61 PNKPGVYYEAEFDAVTFDPDMQEVVDGTIVEVVEFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + DD +R +IV +D
Sbjct: 120 FDGENQQLASNESNRTLGVDDAVRARIVTKSID 152
>gi|73667834|ref|YP_303849.1| DNA-directed RNA polymerase subunit E' [Methanosarcina barkeri str.
Fusaro]
gi|72394996|gb|AAZ69269.1| DNA-directed RNA polymerase, subunit E' [Methanosarcina barkeri
str. Fusaro]
Length = 194
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L + + P G ++ +TVK L ++EG K G ++A+ I IG G I
Sbjct: 1 MYKMMKLVDTVRIPPTLLGEEVTQTVKNALREKLEGQVDKKLGSLVAICKIVEIGEGHIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G V Y V + AI+F P E+++ V + G+F +GP+ + H S TD
Sbjct: 61 VGDGAVYYDVTFEAIMFVPELQEIIEGEVVETVGFGVFVGMGPMDGLL-HVSQITDDFIS 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
++ + +G I E D +R ++V ++
Sbjct: 120 YDAKNARLVTKNGGKSIAEGDHVRARVVAVSIN 152
>gi|374629103|ref|ZP_09701488.1| DNA-directed RNA polymerase, subunit E' [Methanoplanus limicola DSM
2279]
gi|373907216|gb|EHQ35320.1| DNA-directed RNA polymerase, subunit E' [Methanoplanus limicola DSM
2279]
Length = 190
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 8/139 (5%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M++ ++LE ++ + P G L V +L ++EG+ G IAVT I IG G I
Sbjct: 1 MYFRMTLEDKVRVPPDRLGEDLEIVVMDELQKQLEGSIDKDIGIFIAVTEIKEIGEGDII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P G V Y V + ++V R E+++ V + G F +GP+ + H S +D
Sbjct: 61 PSDGAVYYSVIFDSVVMRLSMQEIIEGEVVETTSFGAFVSLGPIDAML-HVSQISD---- 115
Query: 121 PNSNPVCYKSVHGEVVIQE 139
+ Y +G +V QE
Sbjct: 116 ---EYINYDEKNGRLVCQE 131
>gi|150403357|ref|YP_001330651.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
C7]
gi|150034387|gb|ABR66500.1| DNA-directed RNA polymerase [Methanococcus maripaludis C7]
Length = 187
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 3/150 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + + + + P+ FG L E VK+ L + EG GF++++ +D++ G I
Sbjct: 1 MYKILKISDTVRIPPKMFGNPLSENVKRVLMEKYEGILDKDVGFILSIVDVDNVSEGSII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
G G + ++ + + P EV+D + V + G F +GPL I I D + F
Sbjct: 61 YGDGAAYHETEFNVLTYVPELQEVVDGEIVDVVEFGAFVRLGPLDGLIHISQIMDDFVSF 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
P + K V+++ D++R +IV
Sbjct: 121 DPKREAIIGKETGK--VLEKGDKVRARIVA 148
>gi|327400738|ref|YP_004341577.1| DNA-directed RNA polymerase [Archaeoglobus veneficus SNP6]
gi|327316246|gb|AEA46862.1| DNA-directed RNA polymerase [Archaeoglobus veneficus SNP6]
Length = 189
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ I + + + P G + E ++ L+ + EG +YG +I + I+ IG G I
Sbjct: 1 MYARIRVRDTVRVPPTRLGEDIEEVIRDLLWEQFEGRLDREYGMLIGIENIEDIGEGRII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G V + V++ AIVF+P EV++ V +V + G F IGPL + I D
Sbjct: 61 EGDGAVYFDVEFTAIVFKPLLQEVIEGEVVEVVEFGAFVSIGPLDALLHMSQITDDFMVY 120
Query: 121 PNSN 124
N
Sbjct: 121 DEKN 124
>gi|159904859|ref|YP_001548521.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
C6]
gi|159886352|gb|ABX01289.1| DNA-directed RNA polymerase [Methanococcus maripaludis C6]
Length = 187
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 3/150 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + + + + P+ FG L E VK+ L + EG GF++++ +D++ G I
Sbjct: 1 MYKILKISDTVRIPPKMFGNPLSENVKRVLMEKYEGILDKDIGFILSIVDVDNVSDGSII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
G G + ++ + + P EV+D + V + G F +GPL I I D + F
Sbjct: 61 YGDGAAYHETEFNVLTYVPELQEVVDGEIVDVVEFGAFVRLGPLDGLIHISQIMDDFVSF 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
P + K V+++ D++R +IV
Sbjct: 121 DPKREAIIGKETGK--VLEKGDKVRARIVA 148
>gi|238007814|gb|ACR34942.1| unknown [Zea mays]
Length = 202
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 9/156 (5%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +EH++ + P L + +K +L K G ++V I SI G I
Sbjct: 1 MFSLSQIEHDLPMPPHLLSRPLPDAIKAELERLFLDKVITKLGLCVSVYDIRSIEGGSIH 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
PG+G Y V +R ++F+PF GE+L +T + G+ + F S IP MQF
Sbjct: 61 PGEGCSTYKVSFRLLMFKPFNGEILVGRITGYDDKGLQVSLE----FFSDICIPGHLMQF 116
Query: 120 ----CPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR 151
P+ + + E+ + DDEIR + T+
Sbjct: 117 GTVRGPDGRWMLKTELGDELYLDLDDEIRFLVSSTK 152
>gi|45358003|ref|NP_987560.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
S2]
gi|340623628|ref|YP_004742081.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
X1]
gi|44920760|emb|CAF29996.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
S2]
gi|339903896|gb|AEK19338.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
X1]
Length = 187
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 3/150 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + + + + P+ FG L E VK+ L + EG GF++++ +D++ G I
Sbjct: 1 MYKILKISDTVRIPPKMFGNPLSENVKRVLMEKYEGILDKDIGFILSIVDVDNVSDGSII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
G G + ++ + + P EV+D + V + G F +GPL I I D + F
Sbjct: 61 YGDGAAYHETEFNVLTYVPELQEVVDGEIVDVVEFGAFVRLGPLDGLIHISQIMDDFVSF 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
P + K V+++ D++R +IV
Sbjct: 121 DPKREAIIGKETGK--VLEKGDKVRARIVA 148
>gi|147919758|ref|YP_686496.1| DNA-directed RNA polymerase subunit E' [Methanocella arvoryzae
MRE50]
gi|110621892|emb|CAJ37170.1| DNA-directed RNA polymerase, subunit E [Methanocella arvoryzae
MRE50]
Length = 194
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 1/148 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L I + P+ L + + + L ++EG G ++AVT + IG G I
Sbjct: 1 MYRKVRLVDIIRIPPQRLEEDLEKVISETLREKLEGRIDKTLGSIVAVTDVVEIGEGHIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G V Y V + AI ++P + E+++ V ++ G F +GP+ C + H S D
Sbjct: 61 VGDGAVYYEVTFDAIAYKPEQQEIIEGSVVEIVAFGAFIAVGPVDCLV-HVSQIADEFMT 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIV 148
+ S + E D +R +IV
Sbjct: 120 YDEKNARLTSRETNRSLNEGDHVRARIV 147
>gi|134046224|ref|YP_001097709.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
C5]
gi|132663849|gb|ABO35495.1| DNA-directed RNA polymerase, subunit E' [Methanococcus maripaludis
C5]
Length = 187
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 3/150 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + + + + P+ FG L E VK+ L + EG GF++++ +D + G I
Sbjct: 1 MYKILKISDTVRIPPKMFGNPLSENVKRVLMEKYEGILDKDIGFILSIVDVDEVSDGSII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
G G + ++ + + P EV+D + V + G F +GPL I I D + F
Sbjct: 61 YGDGAAYHETEFNVLTYVPELQEVVDGEIVDVVEFGAFVRLGPLDGLIHISQIMDDFVSF 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
P + K V+++ D++R +IV
Sbjct: 121 DPKREAIIGKETGK--VLEKGDKVRARIVA 148
>gi|226496239|ref|NP_001147612.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide [Zea
mays]
gi|195612502|gb|ACG28081.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide [Zea
mays]
Length = 202
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 9/156 (5%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +EH++ + P L + +K +L K G ++V I SI G I
Sbjct: 1 MFSLSQIEHDLPMPPHLLSRPLPDXIKAELERLFLDKVITKLGLCVSVYDIRSIEGGSIH 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
PG+G Y V +R ++F+PF GE+L +T + G+ + F S IP MQF
Sbjct: 61 PGEGCSTYKVSFRLLMFKPFNGEILVGRITGYDDKGLQVSLE----FFSDICIPGHLMQF 116
Query: 120 ----CPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR 151
P+ + + E+ + DDEIR + T+
Sbjct: 117 GTVRGPDGRWMLKTELGDELYLDLDDEIRFLVSSTK 152
>gi|242045626|ref|XP_002460684.1| hypothetical protein SORBIDRAFT_02g033110 [Sorghum bicolor]
gi|241924061|gb|EER97205.1| hypothetical protein SORBIDRAFT_02g033110 [Sorghum bicolor]
Length = 202
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 9/156 (5%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +EH++ + P L + +K +L G ++V I SI G I
Sbjct: 1 MFALSQIEHDLPMPPHLLSRPLPDAIKAELERLFLDKVIANLGLCVSVYDIRSIEGGSIH 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
PGQG Y V +R ++F+PF GEVL + + G+ + F S SIP MQF
Sbjct: 61 PGQGCSTYKVSFRLLMFKPFNGEVLVGRIIGYDDKGLQVSLD----FFSDISIPGHLMQF 116
Query: 120 ----CPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR 151
P+ + E+ + DDEIR + T+
Sbjct: 117 GTVRGPDGRWMLKTEDGDELYLDLDDEIRFLVSSTK 152
>gi|268323238|emb|CBH36826.1| DNA-directed RNA polymerase subunit E' [uncultured archaeon]
Length = 201
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 1/149 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ +S + + P G L VK+ L +EG K G IA+ I + G I
Sbjct: 1 MYTKVSAIDVVRVPPERLGDDLRVVVKEMLQDRLEGRMDKKLGMFIAIQDIVDVKEGRIM 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G V Y + A+VFRP E+++ V ++ + G F EIGPL + H S TD
Sbjct: 61 IGDAGVYYETIFDALVFRPKMQEIVEGAVVEIVEFGAFVEIGPLDGLL-HISQITDEYIS 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
+ + + E D++R +IV
Sbjct: 120 YDEKGAKLVTKDTSRTLGEGDKVRARIVA 148
>gi|367042650|ref|XP_003651705.1| hypothetical protein THITE_2112289 [Thielavia terrestris NRRL 8126]
gi|346998967|gb|AEO65369.1| hypothetical protein THITE_2112289 [Thielavia terrestris NRRL 8126]
Length = 199
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 1/150 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F Q Y ++ + S+ K G I + I GLI
Sbjct: 1 MFILTKIADLVQIAPHDFRKQSYVAIEDNINSKYANKVVQKIGLCICLWDILWTSEGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQF 119
G G V V++R +VFRPFKGEV+ A +T + G++ + F+ +P +F
Sbjct: 61 QGDGMVNVNVEFRMVVFRPFKGEVIVARITDQSSEGIYLATDFFDNIFVPWTELPEGSEF 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
PN N +K + ++ +R+K++
Sbjct: 121 EPNENLWVWKEEDQVMYFDNNEMVRVKVIS 150
>gi|156936879|ref|YP_001434675.1| DNA-directed RNA polymerase subunit E' [Ignicoccus hospitalis
KIN4/I]
gi|156565863|gb|ABU81268.1| DNA-directed RNA polymerase, subunit E' [Ignicoccus hospitalis
KIN4/I]
Length = 177
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 1/148 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + + + P FG L + + L E EG + G ++ VT +D G I
Sbjct: 1 MYRIYRFKDMVRIPPERFGEDLKKVALELLREEYEGVIDEELGIILTVTDVDISPEGYIV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + + + F+P + EV++ +V V K G++ IGP+ + H + D +F
Sbjct: 61 PGDGGTYHEATFTLLAFKPLRNEVVEGIVVNVTKNGIYVNIGPIDGMV-HKAQLGDERFE 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIV 148
++ + VI+ D +R +IV
Sbjct: 120 YDAATGSMVGTSTKTVIKRGDLVRARIV 147
>gi|289192398|ref|YP_003458339.1| DNA-directed RNA polymerase [Methanocaldococcus sp. FS406-22]
gi|288938848|gb|ADC69603.1| DNA-directed RNA polymerase [Methanocaldococcus sp. FS406-22]
Length = 187
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 3/156 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + + + + P FG L ETVK+ L + EG GF++++ + IG G +
Sbjct: 1 MYKILEIADVVKVPPEEFGKDLKETVKKILMEKYEGRLDKDIGFILSIVDVKDIGNGKVV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
G G +PV + +V+ P E+++ V V + G F +GPL I I D + +
Sbjct: 61 HGDGSAYHPVVFETLVYMPEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSY 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDAS 155
P + K V++ D +R +IV + A
Sbjct: 121 DPKREAIIGKETGK--VLEIGDYVRARIVAISLKAE 154
>gi|449436395|ref|XP_004135978.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Cucumis sativus]
gi|449523449|ref|XP_004168736.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Cucumis sativus]
Length = 226
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 6/153 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFY +EH + + P + + +K +L G I+V I S+ G I
Sbjct: 1 MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQF 119
P G Y V + IVFRPF GEV+ V + N+ G+ +G ++ +P+ +F
Sbjct: 61 PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120
Query: 120 CPNSNP---VCYKSVHGEVV--IQEDDEIRLKI 147
P+ N + ++ EV I E DEI+ K+
Sbjct: 121 TPDENNGGRCRWVWIYNEVPFDIYESDEIKFKV 153
>gi|255073311|ref|XP_002500330.1| predicted protein [Micromonas sp. RCC299]
gi|226515593|gb|ACO61588.1| predicted protein [Micromonas sp. RCC299]
Length = 201
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 1 MFYHISLEH-EILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLI 59
MF LE + + P G E + Q++ S G VI + I SI G +
Sbjct: 1 MFQISRLEDANVKILPENLGKPRLEAITQEIESLYIDKVIKDLGLVITLYEIVSIEGGTV 60
Query: 60 QPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLS-CFISHHSIPTDMQ 118
PG+G + V++R +VFRPF GE+++ + + +K G++ +IG S F+ H +
Sbjct: 61 YPGEGSAHFKVEFRVVVFRPFVGEIIEGTLKKADKTGLYVDIGFFSDIFVPEHLMQEPSV 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR 151
F + + ++ + ++ +R++I G +
Sbjct: 121 FDEDEQLWVWMYEDAKMFMDLEEPVRIRIQGIK 153
>gi|357134557|ref|XP_003568883.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Brachypodium distachyon]
Length = 175
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 89/175 (50%), Gaps = 11/175 (6%)
Query: 2 FYHISLEHEILLHPRYFGPQ---LYETVKQKLYSEVEGTCTGK-YGFVIAVTTIDSIGAG 57
F + +L+ P + L +++ +L ++ K +G+ IAV + I G
Sbjct: 3 FLLADMSWNVLISPDQLSSKGLLLRKSILVRLLEDIANRKASKEHGYYIAVNELKEISEG 62
Query: 58 LIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTD 116
++ G V++PV + I +P KGE+L V ++ K G+F + GP+ + F+S ++ D
Sbjct: 63 KVRELTGDVLFPVTFTCITLKPMKGEILVGSVEKILKHGVFLKSGPIENVFLSEKTM-ND 121
Query: 117 MQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR-VDASGIFA-IGTLMDDYLG 169
++ NP+ K H + +++D +R K +G R ++A F + TL D+LG
Sbjct: 122 YKYIGGENPMFMKD-HSK--LEKDTVLRFKAMGFRWMEADRQFQLLATLAGDFLG 173
>gi|414886498|tpg|DAA62512.1| TPA: DNA-directed RNA polymerase III subunit polypeptide [Zea mays]
Length = 290
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 9/156 (5%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +EH++ + P L + +K +L K G ++V I SI G I
Sbjct: 89 MFSLSQIEHDLPMPPHLLSRPLPDAIKAELERLFLDKVITKLGLCVSVYDIRSIEGGSIH 148
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
PG+G Y V +R ++F+PF GE+L +T + G+ + F S IP MQF
Sbjct: 149 PGEGCSTYKVSFRLLMFKPFNGEILVGRITGYDDKGLQVSLE----FFSDICIPGHLMQF 204
Query: 120 ----CPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR 151
P+ + + E+ + DDEIR + T+
Sbjct: 205 GTVRGPDGRWMLKTELGDELYLDLDDEIRFLVSSTK 240
>gi|88604096|ref|YP_504274.1| DNA-directed RNA polymerase subunit E' [Methanospirillum hungatei
JF-1]
gi|88189558|gb|ABD42555.1| DNA-directed RNA polymerase, subunit E' [Methanospirillum hungatei
JF-1]
Length = 190
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 4/133 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+Y + L ++ + P G L + L ++EG+ + G IAVT + IG G +
Sbjct: 1 MYYRLELIDKVRVPPHRLGEDLTTVILDVLQEQLEGSIDKEIGIFIAVTKVLRIGEGEMV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G V Y V + + R E+++ +V + G F +GP+ + H S +D
Sbjct: 61 PGDGAVYYDVDFEGLALRLSLQEIIEGIVVETTSFGAFVSLGPIDAML-HVSQISDEYIS 119
Query: 121 ---PNSNPVCYKS 130
NS +C S
Sbjct: 120 YDEKNSQLICQDS 132
>gi|268325739|emb|CBH39327.1| DNA-directed RNA polymerase, subunit E [uncultured archaeon]
Length = 207
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 1/148 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ +S + + P G L VK+ L +EG K G IA+ I + G I
Sbjct: 1 MYTKVSAIDVVRVPPERLGDDLRVVVKEMLQDRLEGRMDKKLGMFIAIQDIVDVKEGRIM 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G V Y + A+VFRP E+++ V ++ + G F EIGPL + H S TD
Sbjct: 61 IGDAGVYYETIFDALVFRPKMQEIVEGGVVEIVEFGAFVEIGPLDGLL-HISQITDEYIS 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIV 148
+ + + E D++R +IV
Sbjct: 120 YDEKGAKLVTKDTSRTLGEGDKVRARIV 147
>gi|15668573|ref|NP_247371.1| DNA-directed RNA polymerase subunit E' [Methanocaldococcus
jannaschii DSM 2661]
gi|2500642|sp|Q57840.1|RPOE1_METJA RecName: Full=DNA-directed RNA polymerase subunit E'
gi|17943304|pdb|1GO3|E Chain E, Structure Of An Archeal Homolog Of The Eukaryotic Rna
Polymerase Ii Rpb4RPB7 COMPLEX
gi|17943306|pdb|1GO3|M Chain M, Structure Of An Archeal Homolog Of The Eukaryotic Rna
Polymerase Ii Rpb4RPB7 COMPLEX
gi|1591102|gb|AAB98387.1| DNA-directed RNA polymerase, subunit E' (rpoE1) [Methanocaldococcus
jannaschii DSM 2661]
Length = 187
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 3/156 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + + + + P FG L ETVK+ L + EG GFV+++ + IG G +
Sbjct: 1 MYKILEIADVVKVPPEEFGKDLKETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGEGKVV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
G G +PV + +V+ P E+++ V V + G F +GPL I I D + +
Sbjct: 61 HGDGSAYHPVVFETLVYIPEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSY 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDAS 155
P + K V++ D +R +IV + A
Sbjct: 121 DPKREAIIGKETGK--VLEIGDYVRARIVAISLKAE 154
>gi|357134424|ref|XP_003568817.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like isoform
1 [Brachypodium distachyon]
gi|357134426|ref|XP_003568818.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like isoform
2 [Brachypodium distachyon]
Length = 175
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 5/134 (3%)
Query: 38 CTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
+ ++G+ IAV + I G ++ G V++PV + I +P KGE+L V ++ K GM
Sbjct: 43 ASKEHGYYIAVNELKEISEGKVRELTGDVLFPVTFTCITLKPMKGEILVGSVDKILKHGM 102
Query: 98 FAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR-VDASG 156
F + GP+ D ++ NP+ K H + +++D +R +++G R ++
Sbjct: 103 FLKSGPIENIFLSEKTMNDYKYIGGENPMFMKD-HSK--LEKDTIVRFRVMGFRWMEGDR 159
Query: 157 IFA-IGTLMDDYLG 169
F + TL D+LG
Sbjct: 160 QFQLLATLAGDFLG 173
>gi|357517541|ref|XP_003629059.1| DNA-directed RNA polymerase III subunit RPC8 [Medicago truncatula]
gi|355523081|gb|AET03535.1| DNA-directed RNA polymerase III subunit RPC8 [Medicago truncatula]
Length = 220
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 5/148 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFY +EH+ L P + E ++ +L K G I+V I SI G I
Sbjct: 28 MFYLSKIEHKFALPPHLLARPIREAIQSELERLFLDKVIQKLGLCISVYDITSIEGGSIF 87
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLS-CFISHHSIPTDMQF 119
PG G Y V + I+FRPF GE++ A V ++ G+ +G +I H +P +
Sbjct: 88 PGAGAPTYQVVFNLIMFRPFPGEIISAKVMSLDADGVRLSLGFFEDIYIPTHHMPYPSYY 147
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKI 147
+N + +GE E DE ++I
Sbjct: 148 ISKNNTRKWTWEYGE----ETDEFNIEI 171
>gi|297618529|ref|YP_003706634.1| DNA-directed RNA polymerase [Methanococcus voltae A3]
gi|297377506|gb|ADI35661.1| DNA-directed RNA polymerase [Methanococcus voltae A3]
Length = 189
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 71/150 (47%), Gaps = 3/150 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ +++E I + P+ FG L + V++ L + EG GF++A+ ID I G I
Sbjct: 1 MYKILTIEDTIRIPPKMFGNPLKDNVQKVLMEKYEGILDKDLGFILAIEDIDQISEGDII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
G G + + + + P E+++ + + + G F +GPL I + D + F
Sbjct: 61 YGDGAAYHDTTFNILTYEPEVHEMIEGEIVDIVEFGAFIRLGPLDGLIHISQVMDDYVAF 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
P + K V+++ D++R +IV
Sbjct: 121 DPQREAIIGKETGK--VLEKGDKVRARIVA 148
>gi|288560738|ref|YP_003424224.1| DNA-directed RNA polymerase subunit E' RpoE1 [Methanobrevibacter
ruminantium M1]
gi|288543448|gb|ADC47332.1| DNA-directed RNA polymerase subunit E' RpoE1 [Methanobrevibacter
ruminantium M1]
Length = 189
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 3/144 (2%)
Query: 6 SLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGF 65
++E + + P FG L + + L G G ++ VT+I+ +G G++ G G
Sbjct: 3 TIEGTVRIPPHRFGEPLEDVAIETLNESYNGQLDKNLGLIVGVTSIEEMGEGVLIMGDGA 62
Query: 66 VVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQFCPNSN 124
+ V + AI F+P + EV++ V + + G F IGP+ + + D + + P +
Sbjct: 63 AYHNVIFNAIFFKPEQQEVVEGEVIDIAEFGAFVRIGPMDGLVHVSQVTDDYINYDPRNA 122
Query: 125 PVCYKSVHGEVVIQEDDEIRLKIV 148
+ K + ++ E D +R +IV
Sbjct: 123 SLIAK--ESKKILTEGDRVRARIV 144
>gi|207094252|ref|ZP_03242039.1| hypothetical protein HpylHP_16042 [Helicobacter pylori
HPKX_438_AG0C1]
Length = 34
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 31/34 (91%)
Query: 15 PRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAV 48
PRYFGP L TVKQKL++EVEGTC+GKYGFVIAV
Sbjct: 1 PRYFGPNLLNTVKQKLFTEVEGTCSGKYGFVIAV 34
>gi|357517543|ref|XP_003629060.1| DNA-directed RNA polymerase III subunit RPC8 [Medicago truncatula]
gi|355523082|gb|AET03536.1| DNA-directed RNA polymerase III subunit RPC8 [Medicago truncatula]
Length = 187
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 5/148 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFY +EH+ L P + E ++ +L K G I+V I SI G I
Sbjct: 28 MFYLSKIEHKFALPPHLLARPIREAIQSELERLFLDKVIQKLGLCISVYDITSIEGGSIF 87
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLS-CFISHHSIPTDMQF 119
PG G Y V + I+FRPF GE++ A V ++ G+ +G +I H +P +
Sbjct: 88 PGAGAPTYQVVFNLIMFRPFPGEIISAKVMSLDADGVRLSLGFFEDIYIPTHHMPYPSYY 147
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKI 147
+N + +GE E DE ++I
Sbjct: 148 ISKNNTRKWTWEYGE----ETDEFNIEI 171
>gi|330508866|ref|YP_004385294.1| DNA-directed RNA polymerase [Methanosaeta concilii GP6]
gi|328929674|gb|AEB69476.1| DNA-directed RNA polymerase [Methanosaeta concilii GP6]
Length = 194
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + P + G L V++ L + EG G ++AV D IG G I
Sbjct: 1 MYKKMKLKGVARIEPDHLGDPLEAAVERALRDKYEGVVDKSLGTIVAVLGADDIGEGHIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + Y V + +VF+P E+++ V ++ K G F +GP + H S T+
Sbjct: 61 AGDGSIYYEVNFDTLVFKPEMQEIIEGEVVEIVKFGAFLSLGPFDGLL-HVSQITNEYIS 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + E D +R +++ ++
Sbjct: 120 YDEKNARLVSKESNKSLGEGDRVRARVIAVSLN 152
>gi|288932566|ref|YP_003436626.1| DNA-directed RNA polymerase [Ferroglobus placidus DSM 10642]
gi|288894814|gb|ADC66351.1| DNA-directed RNA polymerase [Ferroglobus placidus DSM 10642]
Length = 188
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 1/149 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + + + + P G + E + + L+ + EG +YG ++ + +I+ IG G I
Sbjct: 1 MYARVKIRDTVRVPPNRLGEDMEEVINELLWEQFEGKLDREYGMIVGIESIEEIGEGRII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G V + V + AI F+P EV++ V ++ + G F IGP+ + I D
Sbjct: 61 EGDGGVYFDVIFNAITFKPLLQEVVEGEVVEIVEFGAFVSIGPMDGLLHMSQIMDDYIVY 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
N + ++E D +R++IV
Sbjct: 121 DEKNKRLVGK-ETKRSLEEGDAVRVRIVA 148
>gi|389860871|ref|YP_006363111.1| DNA-directed RNA polymerase subunit E' [Thermogladius
cellulolyticus 1633]
gi|388525775|gb|AFK50973.1| DNA-directed RNA polymerase subunit E' [Thermogladius
cellulolyticus 1633]
Length = 175
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 1/147 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF I ++ + + P FG L E ++L E EG T G V+A+ + G I
Sbjct: 1 MFKLIKVKSVVRIPPDKFGRPLDEVSWEELRKEYEGALTSNAGLVVAILDVKVSEYGRII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + V++ A+ F PF EV++ V V + G+F ++GPL FI + +D +
Sbjct: 61 HGDGATYHDVEFTALTFDPFLKEVVEGEVLNVTESGIFIDLGPLDGFIYIGQV-SDERAE 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKI 147
+S+ G+ I++ D ++ +I
Sbjct: 120 YDSSRQALLLKGGKKTIEKGDVVKARI 146
>gi|242086985|ref|XP_002439325.1| hypothetical protein SORBIDRAFT_09g004460 [Sorghum bicolor]
gi|241944610|gb|EES17755.1| hypothetical protein SORBIDRAFT_09g004460 [Sorghum bicolor]
Length = 175
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 92/175 (52%), Gaps = 11/175 (6%)
Query: 2 FYHISLEHEILLHPRYF---GPQLYETVKQKLYSEVEGTCTGK-YGFVIAVTTIDSIGAG 57
F + +L+ P G L + + +L +V K +G+ +AV+ + +I G
Sbjct: 3 FLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTNRRASKEHGYYVAVSQLKAISEG 62
Query: 58 LIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTD 116
++ G V++PV + I +P KGEV+ V ++ K G+F + GP+ S F++ S+ +D
Sbjct: 63 KVRELTGDVLFPVSFTCITLKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSM-SD 121
Query: 117 MQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR-VDASGIFA-IGTLMDDYLG 169
++ N + + + H + +++D +R K++G R ++A F + T+ D+LG
Sbjct: 122 YKYIGGENAM-FMNDHSK--LEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLG 173
>gi|11994719|dbj|BAB03035.1| RNA polymerase II fifth largest subunit-like protein [Arabidopsis
thaliana]
Length = 157
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 38 CTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
T G++I T +++IG G I+ G + +PV + I F+ FKGE++ VV +V+K G+
Sbjct: 24 ATKDLGYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGV 83
Query: 98 FAEIGPLS-CFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGT--RVDA 154
F + GP ++SH +P +F P NP IQ +R ++ T R
Sbjct: 84 FLKSGPYEIIYLSHMKMP-GYEFIPGENPFFMNQYMSR--IQIGARVRFVVLDTEWREAE 140
Query: 155 SGIFAIGTLMDDYLG 169
A+ ++ D LG
Sbjct: 141 KDFMALASIDGDNLG 155
>gi|148642257|ref|YP_001272770.1| DNA-directed RNA polymerase subunit E' [Methanobrevibacter smithii
ATCC 35061]
gi|222444570|ref|ZP_03607085.1| hypothetical protein METSMIALI_00182 [Methanobrevibacter smithii
DSM 2375]
gi|261350890|ref|ZP_05976307.1| DNA-directed RNA polymerase [Methanobrevibacter smithii DSM 2374]
gi|148551274|gb|ABQ86402.1| DNA-dependent RNA polymerase, subunit E, RpoE [Methanobrevibacter
smithii ATCC 35061]
gi|222434135|gb|EEE41300.1| DNA-directed RNA polymerase [Methanobrevibacter smithii DSM 2375]
gi|288860228|gb|EFC92526.1| DNA-directed RNA polymerase [Methanobrevibacter smithii DSM 2374]
Length = 185
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 1/144 (0%)
Query: 6 SLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGF 65
+E + + P F L E Q L G K G +I V I+ IG G + G G
Sbjct: 3 KIEDTVRIPPYRFDDPLEEVAIQTLNDTYNGRLDKKLGLLICVNEIEEIGEGRLIMGDGA 62
Query: 66 VVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNP 125
+ V + AI F+P + EV+D V ++ + G F IGP+ + H S TD +S
Sbjct: 63 SYHNVVFNAIFFKPEQQEVIDGEVIEIAEFGAFVRIGPMDGLV-HVSQVTDDYINYDSKR 121
Query: 126 VCYKSVHGEVVIQEDDEIRLKIVG 149
+ + E D +R +IV
Sbjct: 122 GALLAKESNKTLDEGDLVRTRIVA 145
>gi|18403570|ref|NP_566719.1| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana]
gi|21553765|gb|AAM62858.1| RNA polymerase II fifth largest subunit-like protein [Arabidopsis
thaliana]
gi|332643168|gb|AEE76689.1| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana]
Length = 174
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 38 CTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
T G++I T +++IG G I+ G + +PV + I F+ FKGE++ VV +V+K G+
Sbjct: 41 ATKDLGYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGV 100
Query: 98 FAEIGPLS-CFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGT--RVDA 154
F + GP ++SH +P +F P NP IQ +R ++ T R
Sbjct: 101 FLKSGPYEIIYLSHMKMP-GYEFIPGENPFFMNQYMSR--IQIGARVRFVVLDTEWREAE 157
Query: 155 SGIFAIGTLMDDYLG 169
A+ ++ D LG
Sbjct: 158 KDFMALASIDGDNLG 172
>gi|124485482|ref|YP_001030098.1| DNA-directed RNA polymerase subunit E' [Methanocorpusculum
labreanum Z]
gi|124363023|gb|ABN06831.1| DNA-directed RNA polymerase, subunit E' [Methanocorpusculum
labreanum Z]
Length = 190
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 8/135 (5%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+Y + L ++ + P G L + L + EG+ + G IAVT ++ +G G I
Sbjct: 1 MYYKLKLNDKVRVPPERMGEDLNTVILDVLQEQFEGSVDKEMGIFIAVTGVNRVGDGEII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCF-----ISHHSIPT 115
G Y V + A+V R E+++ VV + G F +GP+ IS I
Sbjct: 61 YSDGGAYYDVDFEAVVLRLSLQEIIEGVVVETTSFGAFVSLGPIDAMLHMSQISDEYIDY 120
Query: 116 DMQFCPNSNPVCYKS 130
D + NS VC S
Sbjct: 121 DEK---NSRLVCKDS 132
>gi|374635070|ref|ZP_09706675.1| DNA-directed RNA polymerase [Methanotorris formicicus Mc-S-70]
gi|373563472|gb|EHP89666.1| DNA-directed RNA polymerase [Methanotorris formicicus Mc-S-70]
Length = 187
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ +++ I + PR FG L ET+ + L + EG GF++++ + IG G +
Sbjct: 1 MYKILTISDIIRVPPRMFGRPLKETITKILREKYEGILDKDIGFILSIVDLKEIGEGKVI 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
G G +PV + +++ P EV++ + + + G F +GPL I I D + +
Sbjct: 61 HGDGAAYHPVVFDTLIYVPELHEVVEGEIVDIVEFGAFVRLGPLDGLIHISQIMDDYVSY 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
P + + V++ D++R +IV
Sbjct: 121 DPKREAIIGRETGK--VLEIGDKVRARIVA 148
>gi|354544030|emb|CCE40752.1| hypothetical protein CPAR2_107870 [Candida parapsilosis]
Length = 195
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 9/152 (5%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + I + P F + + +L + K G VI + + I GL++
Sbjct: 1 MFILSEINDLIRIPPHTFNIPIQHAITDELNKKYANKVVPKLGVVITIWDLLDIKDGLLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPT----- 115
PG G V++R IVF+PF GEVL VT+ G+ + F IP
Sbjct: 61 PGDGGSYVEVRFRCIVFKPFVGEVLTGWVTECKATGIKVRLE----FFDDIWIPADYLFE 116
Query: 116 DMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKI 147
D +F + + + S E+ I D++IR K+
Sbjct: 117 DCEFKESESAWVWNSADTELFIDVDEKIRFKV 148
>gi|116754621|ref|YP_843739.1| DNA-directed RNA polymerase subunit E' [Methanosaeta thermophila
PT]
gi|116666072|gb|ABK15099.1| DNA-directed RNA polymerase, subunit E' [Methanosaeta thermophila
PT]
Length = 206
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + LE + + P G L + V+ L ++ E G ++A+ +DSIG G I
Sbjct: 1 MYKRMKLEGVVRIPPEDMGNPLNDAVEMALRNKYEARVDRTLGAIVAILGVDSIGEGRII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G V Y V + A+VF+P EV++ V ++ K G F IGP + H S TD
Sbjct: 61 AGDGAVYYDVIFDAVVFKPEMQEVVEGEVVEIVKFGAFVSIGPFDGLL-HVSQITDEYMA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + E D +R +I+ ++
Sbjct: 120 YDEKNARLVSKDTNKFLAEGDRVRARIIAVSLN 152
>gi|333910904|ref|YP_004484637.1| DNA-directed RNA polymerase [Methanotorris igneus Kol 5]
gi|333751493|gb|AEF96572.1| DNA-directed RNA polymerase [Methanotorris igneus Kol 5]
Length = 188
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 3/150 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ +++ I + P FG L ET+ L + EG GF++++ + IG G I
Sbjct: 1 MYKILTISDVIRVPPNMFGRPLKETITNILREKYEGILDRDIGFILSIVDVKEIGEGKII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
G G +PV + A+++ P EV++ + + + G F +GPL I I D + +
Sbjct: 61 HGDGAAYHPVVFDALIYIPELHEVVEGEIVDIVEFGAFVRLGPLDGLIHISQIMDDYVTY 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
P + K V++ D +R +IV
Sbjct: 121 DPKREAIIGKETGK--VLEIGDRVRARIVA 148
>gi|344228476|gb|EGV60362.1| hypothetical protein CANTEDRAFT_110098 [Candida tenuis ATCC 10573]
Length = 201
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 12/154 (7%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L I L P F +++ + +++ + G I++ I+ I GL++
Sbjct: 1 MFILTKLSDLIRLPPHTFNVPIHQALTNEIHKKYSNKIIHNVGLAISIWDIEDIKEGLLR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVN------KVGMFAEIGPLSCFISHHSIP 114
PG G + +R IV++PF GE+L+ VVT N K+ F EI FI +
Sbjct: 61 PGDGGSHVEITFRMIVWKPFIGELLEGVVTDCNVEGIKVKLDFFDEI-----FIRKEMLF 115
Query: 115 TDMQFCPNSNPVCYK-SVHGEVVIQEDDEIRLKI 147
+ +F C+K E+ I ++ IR ++
Sbjct: 116 ENCEFKGVERAWCWKPDDENELFIDLNERIRFRV 149
>gi|282163022|ref|YP_003355407.1| DNA-directed RNA polymerase subunit E' [Methanocella paludicola
SANAE]
gi|282155336|dbj|BAI60424.1| DNA-directed RNA polymerase subunit E' [Methanocella paludicola
SANAE]
Length = 195
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 5/151 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L I + P+ L + + + + ++EG G ++AV I IG G I
Sbjct: 1 MYRKVRLVDIIRIPPQRLEEDLEQVITETIRDKLEGRIDKALGSIVAVLDIVDIGEGHIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
G G V Y V + AI +RP E+++ V ++ G F +GP+ C + + + M +
Sbjct: 61 VGDGAVYYEVTFDAISYRPELQEIVEGQVVEIVAFGAFVSVGPIDCLVHVSQVADEFMSY 120
Query: 120 C-PNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
NS V +S + E D +R +IV
Sbjct: 121 DEKNSRLVSKESSKS---LGEGDSVRARIVA 148
>gi|284161716|ref|YP_003400339.1| DNA-directed RNA polymerase [Archaeoglobus profundus DSM 5631]
gi|284011713|gb|ADB57666.1| DNA-directed RNA polymerase [Archaeoglobus profundus DSM 5631]
Length = 187
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
Query: 15 PRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRA 74
P L E + L+ + EG +YG VI + ++DSIG G I G G V + V++ A
Sbjct: 15 PNRLNEDLEEVIHDLLWEQFEGKLDTEYGMVIGIESVDSIGEGKIVEGDGGVYFDVEFTA 74
Query: 75 IVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGE 134
+ F+P EV++ V +V + G F IGPL + I D N +
Sbjct: 75 LTFKPLLQEVVEGEVVEVVEFGAFVSIGPLDALLHRSQIMDDYIVYDEKNERLI-GKETK 133
Query: 135 VVIQEDDEIRLKIVG 149
I++ D +R +IV
Sbjct: 134 RTIEKGDLVRARIVA 148
>gi|296109734|ref|YP_003616683.1| DNA-directed RNA polymerase [methanocaldococcus infernus ME]
gi|295434548|gb|ADG13719.1| DNA-directed RNA polymerase [Methanocaldococcus infernus ME]
Length = 184
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 3/156 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + + + + P FG L ETVK+ L + EG GFV+++ + IG G +
Sbjct: 1 MYKILEVADVVRIPPSKFGSDLKETVKEILIEKYEGMLEKNLGFVLSIIDVKEIGEGRVI 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
G G +PV + A++++P E+++ V V G+F +GPL + I D + +
Sbjct: 61 HGDGSAYHPVVFEALIYKPEIYELVEGEVVDVVDFGLFVRLGPLDGLVHVSQIMDDYVSY 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDAS 155
P + V++ D +R +IV + +
Sbjct: 121 DPKREAIIGNETKK--VVEVGDTVRARIVAISLKSD 154
>gi|297843474|ref|XP_002889618.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297335460|gb|EFH65877.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 204
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFY LEH + + P L + +K L + G ++V I SI G +
Sbjct: 1 MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSVYDIKSIEGGFVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G Y V +R +VFRPF GEV+ A + + G+ +G F +P +
Sbjct: 61 PGDGAATYKVGFRIVVFRPFVGEVIAAKFKESDSNGLRLTLG----FFDDIYVPAPLMPK 116
Query: 121 PN 122
PN
Sbjct: 117 PN 118
>gi|435850763|ref|YP_007312349.1| DNA-directed RNA polymerase subunit E' [Methanomethylovorans
hollandica DSM 15978]
gi|433661393|gb|AGB48819.1| DNA-directed RNA polymerase subunit E' [Methanomethylovorans
hollandica DSM 15978]
Length = 190
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 3/154 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L I + P G + VK L ++EG G ++A+T I+ +G G I
Sbjct: 1 MYKKMKLSDTIRVAPNLLGGDVQVNVKNALREKLEGRLDKHIGAIVAITEIEQVGEGHIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
G G V Y V + AIVF P EV++ V + + G F IG + + I D M +
Sbjct: 61 VGDGAVYYDVDFDAIVFTPMIQEVVEGEVVETVEFGAFVSIGAMDGLLHVSQITDDFMSY 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ + K+ G + E D++R +IV ++
Sbjct: 121 DGKNGRLMSKT--GNRSLGEGDKVRARIVALSIN 152
>gi|354610170|ref|ZP_09028126.1| DNA-directed RNA polymerase [Halobacterium sp. DL1]
gi|353194990|gb|EHB60492.1| DNA-directed RNA polymerase [Halobacterium sp. DL1]
Length = 190
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ L+ + + P++ G + VK+ L ++EG G ++ VT + +G G +
Sbjct: 1 MYKRARLKDTVEVPPQHLGDVGPDLVKRLLQDKLEGRMDEDIGSIVTVTEVHDLGDGAVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y ++ A+ F P EV+D + +V G F IGP+ + H S +D
Sbjct: 61 PSRPGVYYDAEFDAVTFDPEMQEVVDGEIVEVVSFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S VI D +R +IV +D
Sbjct: 120 FDEENQQLASRESNSVIGTGDAVRARIVTKSID 152
>gi|115462713|ref|NP_001054956.1| Os05g0224700 [Oryza sativa Japonica Group]
gi|113578507|dbj|BAF16870.1| Os05g0224700 [Oryza sativa Japonica Group]
Length = 782
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 80/151 (52%), Gaps = 9/151 (5%)
Query: 1 MFYHISLEHEILLHPRYFGPQ---LYETVKQKLYSEVEGTCTGK-YGFVIAVTTIDSIGA 56
+F + + +L+ P P+ L + V L E+ K +G+ IAV+ + +I
Sbjct: 2 VFLKVDMSWNVLISPSELSPKGLLLRKAVIVSLLEEIANRKASKDHGYYIAVSELKAISE 61
Query: 57 GLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPT 115
G ++ G V++PV + I +P KGE+L V ++ K G+F + GP+ S F+S ++ +
Sbjct: 62 GKVRELTGDVLFPVTFTCITQKPTKGEILVGSVDKILKHGVFLKSGPIESIFLSEKTL-S 120
Query: 116 DMQFCPNSNPVCYKSVHGEVVIQEDDEIRLK 146
D ++ NP+ + + H + +++D +R K
Sbjct: 121 DYKYIGGENPM-FMNDHSK--LEKDTAVRFK 148
>gi|384254130|gb|EIE27604.1| DNA-directed RNA polymerase II, 19 kDa polypeptide [Coccomyxa
subellipsoidea C-169]
Length = 211
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 1/152 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF LE ++ + P G + V + G V+ + I I G I
Sbjct: 1 MFILSELEDKVRIEPADLGRPTVDAVTAVIEQLYLDKVVSDLGLVVTIYDILDIQGGSIY 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQF 119
+G Y VK+R +VFRPF GEVL +T+ +K G+ + F+ H++P F
Sbjct: 61 ASEGAAHYTVKFRLVVFRPFIGEVLVGRLTKCDKTGLHLSLDFFEDIFVPEHALPAPSFF 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR 151
+K + ++ +D IRL++ G +
Sbjct: 121 DEAEGLWFWKFEDQPMWLEMEDAIRLRVKGVK 152
>gi|448725121|ref|ZP_21707607.1| DNA-directed RNA polymerase subunit E' [Halococcus morrhuae DSM
1307]
gi|445801029|gb|EMA51374.1| DNA-directed RNA polymerase subunit E' [Halococcus morrhuae DSM
1307]
Length = 191
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 5/157 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L + + P+ VK+ L ++EG + G +++VT + IG G +
Sbjct: 1 MYKRVRLTDTVEVPPQLLADVSAGMVKRLLQDKLEGRLDEEVGSIVSVTEVHDIGDGRVP 60
Query: 61 PG----QGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
PG +G V Y ++ A+ F P EV+D V ++ G F IGP+ + H S +D
Sbjct: 61 PGRRDHEGSVYYEAEFDAVTFDPQMQEVIDGEVVEIVNFGAFVGIGPIDGLL-HVSQISD 119
Query: 117 MQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ + S + + D +R +IV +D
Sbjct: 120 EYLAYDEDGQMLASRESDQTLGVGDSVRARIVTKSID 156
>gi|302814541|ref|XP_002988954.1| hypothetical protein SELMODRAFT_128885 [Selaginella moellendorffii]
gi|300143291|gb|EFJ09983.1| hypothetical protein SELMODRAFT_128885 [Selaginella moellendorffii]
Length = 187
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 1/152 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L + + P L + + +++ G +++ I SI G +
Sbjct: 1 MFVLSKLRDTLRIPPANLVLPLLDAITLEIHRLFLDKVVKDLGLCVSLYDIQSIEGGFVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQF 119
PG G Y V+++ ++FRPF GE+L A + + +K G+ +G + HH + +F
Sbjct: 61 PGDGAPTYTVEFQLVMFRPFPGEILVAKLKKCDKNGLVLSMGFFEDIIVPHHQLQQPSKF 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR 151
N + E+ + ++E+R +++ R
Sbjct: 121 DENEKLWVWNYQENEMFMDLEEEVRFRVLKVR 152
>gi|11498717|ref|NP_069946.1| DNA-directed RNA polymerase subunit E' [Archaeoglobus fulgidus DSM
4304]
gi|2649472|gb|AAB90126.1| DNA-directed RNA polymerase, subunit E' (rpoE1) [Archaeoglobus
fulgidus DSM 4304]
Length = 189
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 3/149 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ I L + + P G + + + L+ + EG +YG +I + +I+ IG G I
Sbjct: 1 MYARIKLRDTVRVPPSKLGEDIEKVINSLLWEQFEGRLDREYGMIIGIESIEEIGEGRII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
G G V + V + AI FRP EV++ V ++ + G F IGP + + D M F
Sbjct: 61 EGDGGVYFDVVFNAICFRPLHQEVVEGEVIEIVEFGAFVSIGPFDALLHMSQVTDDYMVF 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIV 148
+ + + V+QE D++R +IV
Sbjct: 121 DEKNKRLVGRETKK--VLQEGDKVRARIV 147
>gi|302348866|ref|YP_003816504.1| DNA-directed RNA polymerase subunit E [Acidilobus saccharovorans
345-15]
gi|302329278|gb|ADL19473.1| DNA-directed RNA polymerase subunit E [Acidilobus saccharovorans
345-15]
Length = 193
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 1 MFYHISLEHEILLHPRY-FGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLI 59
M+ +L + + P + ++ + V Q L E+EG G +I+V D G G++
Sbjct: 1 MYAEYTLYEWVGVRPELAYSGEIKQAVLQSLREELEGQVDETMGIIISVIDADVEGDGVL 60
Query: 60 QPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSI-PTDMQ 118
P + +PV+YR + F P EV +V+ + G F +GP F+ + D
Sbjct: 61 LPNDPQIYFPVRYRVLSFEPLLQEVDKGIVSDAREFGAFVSLGPTDGFVHRTQLMDEDAD 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIG---TLMDDYLG 169
F + +K V+ +D +R++I + + A+ T+ YLG
Sbjct: 121 FIQETR--SFKGRESGRVVGVNDIVRVRITQVSKASRRMAAVRIGLTMRQPYLG 172
>gi|297831004|ref|XP_002883384.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
gi|297329224|gb|EFH59643.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
Length = 174
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 6/135 (4%)
Query: 38 CTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
T G++I T +++IG G I+ G + +PV + I F+ FKGEV+ VV +V+K G+
Sbjct: 41 ATKDLGYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEVVHGVVQKVHKSGV 100
Query: 98 FAEIGPLS-CFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGT--RVDA 154
F GP ++SH +P +F P P+ IQ +R ++ T R
Sbjct: 101 FLRSGPYEIIYLSHVKMP-GYEFIPGEKPIFMNQNMSR--IQIGARVRFIVLDTEWREAE 157
Query: 155 SGIFAIGTLMDDYLG 169
A+ ++ D LG
Sbjct: 158 KDFMALASIDGDNLG 172
>gi|71654681|ref|XP_815955.1| RNA polymerase-like protein [Trypanosoma cruzi strain CL Brener]
gi|70881050|gb|EAN94104.1| RNA polymerase-like protein, putative [Trypanosoma cruzi]
Length = 190
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 87/188 (46%), Gaps = 19/188 (10%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEG------TCTGKYGFV--------- 45
MFY + L+ I + P G L+ + + L + VEG G G V
Sbjct: 1 MFYKMELQKIIRVEPHLLGRTLHRHLAKYLRNAVEGHPFQMPLLKGSNGEVVRVDQSSSA 60
Query: 46 IAVTTIDSIGAGLIQP---GQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEI- 101
I V +D + L++ G V + + Y A+VF+ +GEV+D +V V + G + ++
Sbjct: 61 IIVAVLDILNTELLEGRVLDDGGVSFLLHYEALVFKLHRGEVVDLMVVAVEREGWWGDVL 120
Query: 102 GPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIG 161
G +IS + ++ + + + + G ++ + +R+++V + G+ AIG
Sbjct: 121 GVGKMYISRGQMGSEWVYESDGVEGIWITKDGSRSVKNGEIVRVRVVAETPQSEGVVAIG 180
Query: 162 TLMDDYLG 169
+++ YLG
Sbjct: 181 SMIGKYLG 188
>gi|15920582|ref|NP_376251.1| DNA-directed RNA polymerase subunit E' [Sulfolobus tokodaii str. 7]
gi|15621365|dbj|BAB65360.1| DNA-directed RNA polymerase subunit E' [Sulfolobus tokodaii str. 7]
Length = 183
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 72/170 (42%), Gaps = 2/170 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF I + I + P YFG L E Q L E + G V+AV G I
Sbjct: 1 MFKLIKAKGIIRIPPEYFGQPLDEIALQILRQEYQEKMIKDLGLVLAVLDAKVSEEGYII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + V + + F P EV++ V QV+ G++ IGP+ ++H S TD
Sbjct: 61 FGDGATYHEVSFEMLAFVPIIQEVVEGEVNQVDNYGVYVNIGPVDG-LAHISQITDDNLK 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIG-TLMDDYLG 169
+ N + +IQ+ D +R +I+ + I T+ YLG
Sbjct: 120 FDQNRGILIGERSKKIIQKGDRVRARIISVSTSGGRMPRIALTMKQPYLG 169
>gi|119872434|ref|YP_930441.1| DNA-directed RNA polymerase subunit E' [Pyrobaculum islandicum DSM
4184]
gi|119673842|gb|ABL88098.1| DNA-directed RNA polymerase, subunit E' [Pyrobaculum islandicum DSM
4184]
Length = 195
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 67/148 (45%)
Query: 2 FYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQP 61
F + E + + P FG L + Q+L S+ EG + G+V+AV T G I
Sbjct: 7 FRLVEAEDYVRIPPTEFGKPLEDIALQQLRSKYEGRVLREVGYVVAVLTAKVGREGRIVF 66
Query: 62 GQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCP 121
G G + + + + P GE+++ VV V ++GM IGP+ FI+ + +
Sbjct: 67 GDGGTYHRAVFTMLAYMPLDGEIIEGVVENVREMGMLVRIGPILGFINKIHVMDEPNIFF 126
Query: 122 NSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
+++ Y + I D +R +I G
Sbjct: 127 DASTKSYIGERSKRKISVGDIVRARITG 154
>gi|226493930|ref|NP_001150375.1| LOC100284005 [Zea mays]
gi|194705372|gb|ACF86770.1| unknown [Zea mays]
gi|195638760|gb|ACG38848.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
gi|195658229|gb|ACG48582.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
gi|413944600|gb|AFW77249.1| DNA-directed RNA polymerase II polypeptide isoform 1 [Zea mays]
gi|413944601|gb|AFW77250.1| DNA-directed RNA polymerase II polypeptide isoform 2 [Zea mays]
gi|413944602|gb|AFW77251.1| DNA-directed RNA polymerase II polypeptide isoform 3 [Zea mays]
Length = 175
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 91/175 (52%), Gaps = 11/175 (6%)
Query: 2 FYHISLEHEILLHPRYF---GPQLYETVKQKLYSEVEGTCTGK-YGFVIAVTTIDSIGAG 57
F + +L+ P G L + + +L +V K +G+ IAV + +I G
Sbjct: 3 FLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTNRRASKEHGYYIAVNQLKAISEG 62
Query: 58 LIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTD 116
++ G V++PV + I +P KGEV+ V ++ K G+F + GP+ S F++ S+ ++
Sbjct: 63 KVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSM-SN 121
Query: 117 MQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR-VDASGIFA-IGTLMDDYLG 169
++ N + + + H + +++D +R K++G R ++A F + T+ D+LG
Sbjct: 122 YKYIGGENAM-FMNDHSK--LEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLG 173
>gi|448519252|ref|XP_003868045.1| Rpc25 protein [Candida orthopsilosis Co 90-125]
gi|380352384|emb|CCG22610.1| Rpc25 protein [Candida orthopsilosis]
Length = 195
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 9/152 (5%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + I + P F + + +L + K G VI + + I GL++
Sbjct: 1 MFILSEVNDLIRIPPHTFNIPIQHAITDELNKKYANKVVPKLGVVITIWDLLDIKDGLLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQF- 119
PG G V++R IVF+PF GEVL VT+ G+ + F IP D F
Sbjct: 61 PGDGGSYVEVRFRCIVFKPFVGEVLTGWVTECKATGIKVRLE----FFDDIWIPADYLFE 116
Query: 120 -C---PNSNPVCYKSVHGEVVIQEDDEIRLKI 147
C + + + S ++ I D++IR K+
Sbjct: 117 DCEYRESESAWVWNSADTDLFIDVDEKIRFKV 148
>gi|312136667|ref|YP_004004004.1| DNA-directed RNA polymerase, subunit e' [Methanothermus fervidus
DSM 2088]
gi|311224386|gb|ADP77242.1| DNA-directed RNA polymerase, subunit E' [Methanothermus fervidus
DSM 2088]
Length = 193
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+Y L + + + P F L E V L + GT K GF+IA+ I+ IG G +
Sbjct: 1 MYYLTKLVNTVRVPPSRFEEPLEEVVMDILTQSLVGTFDKKLGFMIAIKNIEDIGVGKVI 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
G G Y V + A+ F+P E+++ V ++ + G F IGP+ + I D + +
Sbjct: 61 IGDGAAYYDVTFNALFFKPELHEIIEGEVIEITEFGAFVRIGPVDGLVHISQITDDYIDY 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
P + + K + V++E D++R +IV
Sbjct: 121 DPKNCILVGKET--KRVLKEGDKVRARIVA 148
>gi|255730589|ref|XP_002550219.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240132176|gb|EER31734.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 197
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 11/153 (7%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + I + P F + ++ +L+ + G I+V + I GL++
Sbjct: 1 MFILSEISDLIRIPPSSFNTDIRVSLSDELHKKYSNKIIANLGLAISVWDLLDIKDGLLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM------FAEIGPLSCFISHHSIP 114
PG G VK+RA+V++PF+GE+L VT+ G+ F EI +I +
Sbjct: 61 PGDGGSYVEVKFRALVWKPFRGEILTGWVTECTAKGIKVRLEFFDEI-----WIPKEFLF 115
Query: 115 TDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKI 147
+ +F + Y E+ I +++IR ++
Sbjct: 116 ENCRFSESEQAWIYSLDENELFIDINEKIRFRV 148
>gi|429216710|ref|YP_007174700.1| DNA-directed RNA polymerase subunit E' [Caldisphaera lagunensis DSM
15908]
gi|429133239|gb|AFZ70251.1| DNA-directed RNA polymerase subunit E' [Caldisphaera lagunensis DSM
15908]
Length = 190
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 7/174 (4%)
Query: 1 MFYHISLEHEILLHPR-YFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLI 59
M+ +L + + P F L + V + L SE+EG G +IAV + G G++
Sbjct: 1 MYAQYTLHEWVGVSPDVAFTENLKKAVIETLRSELEGQADPDLGIIIAVLDAEIEGDGIL 60
Query: 60 QPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSI-PTDMQ 118
+ +PVKY I + P + EV +V G+F +GP+ F+ I D++
Sbjct: 61 LSEDPNIYFPVKYTLISYEPMQLEVSKGIVRDARDFGLFVSLGPIDGFVHRSQIMDEDIE 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDD--EIRLKIVGTRVDASGIFAIG-TLMDDYLG 169
+ +K +I+ D +R+ + SG++ IG T+ YLG
Sbjct: 121 YIQERR--GFKGKETGRLIEAGDIVNVRITQISKTSKKSGLYRIGLTMRQPYLG 172
>gi|341582210|ref|YP_004762702.1| DNA-directed RNA polymerase subunit E' [Thermococcus sp. 4557]
gi|340809868|gb|AEK73025.1| DNA-directed RNA polymerase subunit E' [Thermococcus sp. 4557]
Length = 186
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 1/157 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + ++ + + PR F + E K L EG G V+A+ +D IG G+I
Sbjct: 1 MYKLLKIKDVVRIPPRMFTMEPKEAAKLVLRETYEGIYDRDEGVVLAILDVDEIGQGVIV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + V + +V++P EV++ V V G F IGP+ + + D
Sbjct: 61 PGDGATYHEVVFNVLVWKPEMHEVVEGEVIDVAPYGAFIRIGPMDGLVHISQLMDDYVVF 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGI 157
N + +++ DE R +I+ V + I
Sbjct: 121 DEKNK-QFIGKETNRILKLGDEARARIIAVSVKSRVI 156
>gi|119719332|ref|YP_919827.1| DNA-directed RNA polymerase subunit E' [Thermofilum pendens Hrk 5]
gi|119524452|gb|ABL77824.1| DNA-directed RNA polymerase, subunit E' [Thermofilum pendens Hrk 5]
Length = 222
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Query: 11 ILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPV 70
I + PR FG L E + L EG G VI++ + G + G G +
Sbjct: 38 IRIPPRLFGQPLKEASLEILKESFEGRVVQGVGLVISILDAEVSEEGFLTWGDGASYHEA 97
Query: 71 KYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKS 130
++ A+VF P EV++ V V +G+ +GP+ F+ H S Q P+ N + Y
Sbjct: 98 RFTALVFSPVNNEVVEGEVDLVENIGLTVRLGPVEGFV-HKS-----QIYPSRN-ITYDR 150
Query: 131 VHGEVVIQEDDEIR 144
+G V+IQ++ R
Sbjct: 151 ENGVVIIQDEKGTR 164
>gi|115472059|ref|NP_001059628.1| Os07g0477000 [Oryza sativa Japonica Group]
gi|29837202|dbj|BAC75582.1| putative DNA-directed RNA polymerase III subunit 22.9 kDa
polypeptide [Oryza sativa Japonica Group]
gi|113611164|dbj|BAF21542.1| Os07g0477000 [Oryza sativa Japonica Group]
gi|215765537|dbj|BAG87234.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218199590|gb|EEC82017.1| hypothetical protein OsI_25976 [Oryza sativa Indica Group]
Length = 202
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 9/149 (6%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +EH + + P L + +K +L G ++V I S+ G I
Sbjct: 1 MFVLSQIEHNLPMPPHLLSRPLVDAIKAELERLFLDKVVANLGLCVSVYDIRSVEGGFIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+G Y V +R ++FRPF GEVL ++ ++ G+ + F S SIP +
Sbjct: 61 PGEGCSTYKVSFRLLMFRPFVGEVLVGKISGYDEKGLHVSLD----FFSDISIPGHLMQY 116
Query: 121 PNSNPV----CYKSVHG-EVVIQEDDEIR 144
+ + K+ G E+ + DDEIR
Sbjct: 117 GTARALDGRWMLKTEDGDELYLDLDDEIR 145
>gi|290559778|gb|EFD93102.1| RNA polymerase Rpb7 domain protein [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 179
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 3/125 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ I+L +I + P G E VK+ + + G + +I V IDSI G+I
Sbjct: 1 MYEIITLRDKIRVDPSKLGENRDEAVKEIIKHDYVGRIIDEKALIIGVIGIDSIDEGIII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD--MQ 118
P + Y +RAI + P E + VT ++++G IGP+ + H S D +
Sbjct: 61 PNDASIYYNTVFRAIAYTPVLHETVRGQVTDISEIGAVVNIGPIDGLV-HISQTMDDFVD 119
Query: 119 FCPNS 123
F N+
Sbjct: 120 FSKNT 124
>gi|71413914|ref|XP_809078.1| RNA polymerase-like protein [Trypanosoma cruzi strain CL Brener]
gi|70873404|gb|EAN87227.1| RNA polymerase-like protein, putative [Trypanosoma cruzi]
Length = 190
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 86/188 (45%), Gaps = 19/188 (10%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEG------TCTGKYGFVIAV------ 48
MFY + L+ I + P G L+ + + L VEG G G V+ V
Sbjct: 1 MFYKMELQKIIRVEPHLLGRTLHRHLAKYLRHAVEGHPFQMPLLKGSNGEVVRVDQSSSA 60
Query: 49 ---TTIDSIGAGLIQP---GQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEI- 101
+D + L++ G V + + Y A+VF+ +GEV+D +V V + G + ++
Sbjct: 61 VIVAVLDILNTELLEGRVLDDGGVSFLLHYEALVFKLHRGEVVDLMVVAVEREGWWGDVL 120
Query: 102 GPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIG 161
G +IS + ++ + + + + G ++ + +R+++V + G+ AIG
Sbjct: 121 GVGKMYISRGQMGSEWVYESDGVEGIWITKDGSRSVKNGEIVRVRVVAETPQSEGVVAIG 180
Query: 162 TLMDDYLG 169
+++ YLG
Sbjct: 181 SMIGKYLG 188
>gi|15222202|ref|NP_172164.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis thaliana]
gi|7523702|gb|AAF63141.1|AC011001_11 hypothetical protein [Arabidopsis thaliana]
gi|17529108|gb|AAL38764.1| putative RNA polymerase [Arabidopsis thaliana]
gi|23296904|gb|AAN13199.1| putative RNA polymerase [Arabidopsis thaliana]
gi|332189917|gb|AEE28038.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis thaliana]
Length = 204
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFY LEH + + P L + +K L + G +++ I S+ G +
Sbjct: 1 MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G Y V R +VFRPF GEV+ A + + G+ +G F +P +
Sbjct: 61 PGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGLRLTLG----FFDDIYVPAPLMPK 116
Query: 121 PN 122
PN
Sbjct: 117 PN 118
>gi|42571371|ref|NP_973776.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis thaliana]
gi|332189916|gb|AEE28037.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis thaliana]
Length = 189
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFY LEH + + P L + +K L + G +++ I S+ G +
Sbjct: 1 MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G Y V R +VFRPF GEV+ A + + G+ +G F +P +
Sbjct: 61 PGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGLRLTLG----FFDDIYVPAPLMPK 116
Query: 121 PN 122
PN
Sbjct: 117 PN 118
>gi|448732371|ref|ZP_21714652.1| DNA-directed RNA polymerase subunit E' [Halococcus salifodinae DSM
8989]
gi|445804944|gb|EMA55174.1| DNA-directed RNA polymerase subunit E' [Halococcus salifodinae DSM
8989]
Length = 190
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 5/157 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L I + P G VKQ L ++EG G V++V + IG G +
Sbjct: 1 MYKRVELTDTIEVPPPLLGDVSPALVKQLLQDKLEGRLDEDVGSVVSVIDVQDIGDGRVL 60
Query: 61 PG----QGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
PG +G V Y + A+ F P EV+D V ++ G F IGP+ + H S +D
Sbjct: 61 PGRRGHEGSVYYEATFDAVTFDPQMQEVVDGEVVEIVNFGAFVGIGPIDGLL-HVSQISD 119
Query: 117 MQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + + D +R +IV +D
Sbjct: 120 EYLAFDEENQQLASRESDQTLGVGDAVRARIVTKSID 156
>gi|224062241|ref|XP_002300802.1| predicted protein [Populus trichocarpa]
gi|222842528|gb|EEE80075.1| predicted protein [Populus trichocarpa]
Length = 186
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 75/159 (47%), Gaps = 14/159 (8%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFY +EH++LL PR L + +K++L + K G I++ I I G I
Sbjct: 1 MFYLSLIEHKMLLPPRLLNLPLQDAIKEELQNIFLDKVISKLGLCISIYDIRKIDGGFIS 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+G Y V++R IVFRPF GE++ A + + G+ +G F +IP +
Sbjct: 61 PGEGASTYTVEFRMIVFRPFVGEIISAKLKESTADGLHLSLG----FFDDINIPAGLIQK 116
Query: 121 PNS---NP-------VCYKSVHGEVVIQEDDEIRLKIVG 149
P+ +P ++ E + DEIR K++
Sbjct: 117 PSRHVPDPENRYKVLWVWEFNGEEFFVDGIDEIRFKVIS 155
>gi|441432375|ref|YP_007354417.1| putative DNA-directed RNA polymerase subunit [Acanthamoeba
polyphaga moumouvirus]
gi|371944931|gb|AEX62752.1| putative DNA-directed RNA polymerase subunit [Moumouvirus Monve]
gi|440383455|gb|AGC01981.1| putative DNA-directed RNA polymerase subunit [Acanthamoeba
polyphaga moumouvirus]
Length = 198
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 85/170 (50%), Gaps = 10/170 (5%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
++Y LE+++ L P ++ E + + L S+V+G T K G V+ + + S G+I
Sbjct: 6 LYYQTQLENKVSLLPDQMDSEMDEHLLRNLESKVKGKVT-KDGIVLKINRLISYEPGII- 63
Query: 61 PGQGFV---VYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDM 117
P F VY VK+ +V P + VV + K + A+ GP++ I +++I D
Sbjct: 64 PKSNFASTAVYDVKFECLVCSPTINLTIICVVENIIKGYLIAKNGPVTVIIMYNNINND- 122
Query: 118 QFCPNSNPVCYKSVHGEVVIQEDDEIRLKIV--GTRVDASGIFAIGTLMD 165
+F S V Y + + IQ+ D I++ +V + +D + I + L+D
Sbjct: 123 KFTIVSGNVVYN--NNKTAIQKGDYIKVSVVNINSSIDENKILTMCKLID 170
>gi|409721676|ref|ZP_11269840.1| DNA-directed RNA polymerase subunit E' [Halococcus hamelinensis
100A6]
gi|448724828|ref|ZP_21707333.1| DNA-directed RNA polymerase subunit E' [Halococcus hamelinensis
100A6]
gi|445785037|gb|EMA35833.1| DNA-directed RNA polymerase subunit E' [Halococcus hamelinensis
100A6]
Length = 191
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 5/157 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L I + P VK L ++EG + G +++VT + IG G +
Sbjct: 1 MYKRVRLTDTIEVPPHLLADVSSTMVKHLLQDKLEGRLDEEVGSIVSVTEVHDIGDGRVL 60
Query: 61 PG----QGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
PG +G V Y + AI F P EV+D V ++ G F IGP+ + H S +D
Sbjct: 61 PGRRGHEGSVYYEADFDAITFDPQMQEVIDGEVVEIVSFGAFVGIGPIDGLL-HVSQISD 119
Query: 117 MQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + D +R +IV +D
Sbjct: 120 EYLAYDEEGQMLASRESNQTLGVGDAVRARIVTKSID 156
>gi|14600570|ref|NP_147087.1| DNA-directed RNA polymerase subunit E' [Aeropyrum pernix K1]
gi|5103650|dbj|BAA79171.1| DNA-directed RNA polymerase subunit E [Aeropyrum pernix K1]
Length = 186
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 7/175 (4%)
Query: 1 MFYHISLEHEILLHPR--YFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGL 58
M+Y +E I + P Y L + + L +EG + G ++AV +G G+
Sbjct: 1 MYYEYVVEEWIGMEPASIYSSEDLDKAALEHL-RRLEGRIDEEMGVIVAVLDAKIVGDGI 59
Query: 59 IQP--GQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
I P G + YPV+YR + F+P + E++ VVT+ + G+ +GPL + + I +
Sbjct: 60 IPPVSGDPSIYYPVRYRVLAFKPVQLEIVRGVVTRADDFGLVVNLGPLDGKVHRNQIMDE 119
Query: 117 -MQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIG-TLMDDYLG 169
++ P+ + + E+ + + R+ V + I IG T+ YLG
Sbjct: 120 GVELLPDRSGFVGLASKREIRVGDVVRARVVHVSRPSRTAQIIGIGLTMRQPYLG 174
>gi|260943680|ref|XP_002616138.1| hypothetical protein CLUG_03379 [Clavispora lusitaniae ATCC 42720]
gi|238849787|gb|EEQ39251.1| hypothetical protein CLUG_03379 [Clavispora lusitaniae ATCC 42720]
Length = 196
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 8/147 (5%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L I + P F ++ +K +L+ + G ++V I I GL++
Sbjct: 1 MFILSELSDLIRVPPSSFNIPVHHVLKDELHKKYSNKVISNLGLAVSVWDISDIKDGLLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G V++R IV++PF GE+L V + G+ +G F IP D F
Sbjct: 61 PGDGGAYVEVRFRIIVWKPFVGEILTGWVADCSAEGIKVRMG----FFDDIFIPKDYIF- 115
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKI 147
+ V Q D+E +L I
Sbjct: 116 ---ESCTFSPAEKAWVWQMDEETKLYI 139
>gi|150400166|ref|YP_001323933.1| DNA-directed RNA polymerase subunit E' [Methanococcus vannielii SB]
gi|150012869|gb|ABR55321.1| DNA-directed RNA polymerase [Methanococcus vannielii SB]
Length = 188
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 3/150 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ +++ + + P+ FG L + VK+ L + EG G+V+++ I+ + G I
Sbjct: 1 MYKILTISDTVRVPPKMFGTPLNDNVKRVLMDKYEGILDKDVGYVLSIVDINQVSDGSII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
G G + K+ + + P EV++ + V + G F +GPL I I D + F
Sbjct: 61 YGDGAAYHETKFDVLTYVPELHEVVEGEIVDVVEFGAFIRLGPLDGLIHISQIMDDFVSF 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
P + K V+++ D +R +IV
Sbjct: 121 DPKREAIIGKETGK--VLEKGDFVRARIVA 148
>gi|18314155|ref|NP_560822.1| DNA-directed RNA polymerase subunit E' [Pyrobaculum aerophilum str.
IM2]
gi|18161744|gb|AAL65004.1| DNA-directed RNA polymerase subunit E' (rpoE1) [Pyrobaculum
aerophilum str. IM2]
Length = 191
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 64/148 (43%)
Query: 2 FYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQP 61
F + E + + P FG L + +L S EG + G+++AV + G I
Sbjct: 3 FRLVEAEDYVRVPPTEFGKPLEDIALSQLKSRYEGKVLREVGYIVAVLNVKVGREGKIVF 62
Query: 62 GQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCP 121
G G + + + F P GEV++ VV ++GM IGP+ FI+ I D
Sbjct: 63 GDGGTYHRAVFTMLAFMPLDGEVVEGVVENAREMGMLVRIGPILGFINKIHIMDDPNIFF 122
Query: 122 NSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
+++ Y + + D +R +I G
Sbjct: 123 DASTKSYIGERTKRRVSVGDVVRARITG 150
>gi|241948883|ref|XP_002417164.1| DNA-directed RNA polymerase III 25 kDa subunit, putative [Candida
dubliniensis CD36]
gi|223640502|emb|CAX44756.1| DNA-directed RNA polymerase III 25 kDa subunit, putative [Candida
dubliniensis CD36]
Length = 195
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 14/171 (8%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + I + P F + ++ +L + G VI + I I GL++
Sbjct: 1 MFILSEISDLIRIPPSSFNVPIQHSISDELNKKYANKIIANLGLVITIWDILDIKDGLLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDM--- 117
PG G V++R+IV++PF+GE+L VT+ G+ + F IP D
Sbjct: 61 PGDGGSYVEVRFRSIVWKPFRGEILTGWVTECTPKGIKVRME----FFDEIWIPKDFLFE 116
Query: 118 --QFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDD 166
Q+ + Y E+ I ++ IR RV+ + + ++D
Sbjct: 117 NCQYSESEQAWIYLLDENELFIDVNERIRF-----RVEEENFYNVKPKLND 162
>gi|449432628|ref|XP_004134101.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449432630|ref|XP_004134102.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449504102|ref|XP_004162253.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449504105|ref|XP_004162254.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
Length = 190
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 4/111 (3%)
Query: 42 YGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEI 101
+G+ ++VT++ SIG G+++ V +P+ + F PF+GE+L VV + + G+ +
Sbjct: 46 HGYFLSVTSLRSIGKGIVKNESQCVSFPITFICRTFLPFEGEILHGVVRHIFQRGLLLKC 105
Query: 102 GPLS-CFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR 151
GP+ F+S +PT Q+ NPV S I D +R ++G R
Sbjct: 106 GPIKYVFLSARKMPT-YQYVGGENPVF--SSKEFATIGNDVVVRFSVLGVR 153
>gi|222637023|gb|EEE67155.1| hypothetical protein OsJ_24224 [Oryza sativa Japonica Group]
Length = 365
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +EH + + P L + +K +L G ++V I S+ G I
Sbjct: 164 MFVLSQIEHNLPMPPHLLSRPLVDAIKAELERLFLDKVVANLGLCVSVYDIRSVEGGFIF 223
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+G Y V +R ++FRPF GEVL ++ ++ G+ + F S SIP +
Sbjct: 224 PGEGCSTYKVSFRLLMFRPFVGEVLVGKISGYDEKGLHVSLD----FFSDISIPGHLMQY 279
Query: 121 PNSNPV----CYKSVHG-EVVIQEDDEIRL 145
+ + K+ G E+ + DDEIR
Sbjct: 280 GTARALDGRWMLKTEDGDELYLDLDDEIRF 309
>gi|223479016|ref|YP_002582922.1| DNA-directed RNA polymerase subunit E' [Thermococcus sp. AM4]
gi|214034242|gb|EEB75068.1| DNA-directed RNA polymerase subunit E' [Thermococcus sp. AM4]
Length = 186
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 1/157 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + ++ + + PR F E K L EG G V+AV ++ + G+I
Sbjct: 1 MYKLLKVKDVVRIPPRMFTMDPREAAKLVLRETYEGIYDRDEGVVLAVLDVEEVSEGVIV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + V + +V++PF EV++ V V G F IGP+ + + D
Sbjct: 61 PGDGATYHEVVFNVLVWQPFMHEVVEGEVIDVAPYGAFVRIGPMDGLVHISQLMDDYVVF 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGI 157
N + + +++ DE+R +++ V + I
Sbjct: 121 DEKNK-QFLGKETKRILKLGDEVRARVIAISVKSRVI 156
>gi|226466694|emb|CAX69482.1| polymerase (RNA) III (DNA directed) polypeptide H [Schistosoma
japonicum]
Length = 212
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 5/153 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +SL +++ P Y G + E ++Q+L S + K G I++ I + I
Sbjct: 1 MFVLVSLRDTVVIKPNYIGSNMKEIIEQELNSRLCSKVIYKVGLCISLWDILKVEESFIS 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQF 119
G V +R + FRPF E+L +V ++K G+ + FI + + ++
Sbjct: 61 DVDGSYYTTVSFRIVCFRPFIDEILIGIVKSLSKTGLRVSLNFFDDIFIPAEKLRSPSRY 120
Query: 120 CPNSNPVCYKSVH----GEVVIQEDDEIRLKIV 148
N ++ + E+ I + D IR ++V
Sbjct: 121 DYEQNAWIWEYAYEGETAELRIDKHDTIRFRVV 153
>gi|240102556|ref|YP_002958865.1| DNA-directed RNA polymerase subunit E' [Thermococcus gammatolerans
EJ3]
gi|239910110|gb|ACS33001.1| DNA-directed RNA polymerase subunit E' (rpoE1) [Thermococcus
gammatolerans EJ3]
Length = 186
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 1/157 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + ++ + + PR F E K L EG G V+AV ++ + G+I
Sbjct: 1 MYKLLKVKDVVRIPPRMFTMDPKEAAKLVLRGTYEGIYDRDEGVVLAVLDVEEVSEGVIV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + V + +V++PF EV++ V V G F IGP+ + + D
Sbjct: 61 PGDGATYHEVVFNVLVWQPFMHEVVEGEVIDVAPYGAFVRIGPMDGLVHISQLMDDYVVF 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGI 157
N + + +++ DE+R +++ V + I
Sbjct: 121 DEKNK-QFLGKETKRILKLGDEVRARVIAISVKSRVI 156
>gi|238014632|gb|ACR38351.1| unknown [Zea mays]
Length = 130
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +EH++ + P L + +K +L K G ++V I SI G I
Sbjct: 1 MFSLSQIEHDLPMPPHLLSRPLPDAIKAELERLFLDKVITKLGLCVSVYDIRSIEGGSIH 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
PG+G Y V +R ++F+PF GE+L +T + G+
Sbjct: 61 PGEGCSTYKVSFRLLMFKPFNGEILVGRITGYDDKGL 97
>gi|171185361|ref|YP_001794280.1| DNA-directed RNA polymerase subunit E' [Pyrobaculum neutrophilum
V24Sta]
gi|170934573|gb|ACB39834.1| RNA polymerase Rpb7 domain protein [Pyrobaculum neutrophilum
V24Sta]
Length = 191
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 66/148 (44%)
Query: 2 FYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQP 61
F + E + + P FG L + Q+L + EG + G+V+AV T G I
Sbjct: 3 FRVVEAEDYVRIPPADFGKPLEDIALQQLKARYEGRVLREVGYVVAVLTAKVSREGKIVF 62
Query: 62 GQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCP 121
G G + + + + P GE+++ VV V ++GM IGP+ FI+ + +
Sbjct: 63 GDGGTYHKALFTMLAYMPLDGEIVEGVVENVREMGMLVRIGPVLGFINKIHVMDEPNILF 122
Query: 122 NSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
+++ Y + + D +R +I G
Sbjct: 123 DASTKSYIGERTKRRVGVGDVVRARITG 150
>gi|371943843|gb|AEX61671.1| putative DNA-directed RNA polymerase subunit [Megavirus courdo7]
Length = 199
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 85/170 (50%), Gaps = 10/170 (5%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
+++ LE+++ L P Q+ + + L S+V+G T K G V+ + + G+I
Sbjct: 6 LYFQTQLENKVSLLPDQMNSQMDTHLLKNLESKVKGKVT-KDGIVLKINRLIDYQPGII- 63
Query: 61 PGQGFV---VYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDM 117
PG F VY VKY ++ P + VV + K + A+ GP+ + +++I +D
Sbjct: 64 PGSNFAGTAVYDVKYECLICSPTNNLNVICVVENIVKGFLIAKNGPVILIVQYNNINSD- 122
Query: 118 QFCPNSNPVCYKSVHGEVVIQEDDEIRLKI--VGTRVDASGIFAIGTLMD 165
+F S + Y S + IQ+ D I++ + + + +D + I A+ L+D
Sbjct: 123 KFGIVSGNITYTSNNNP--IQKGDYIKVSVININSNIDENKIMAMCKLLD 170
>gi|255559937|ref|XP_002520987.1| DNA-directed RNA polymerase III 25 kD polypeptide, putative
[Ricinus communis]
gi|223539824|gb|EEF41404.1| DNA-directed RNA polymerase III 25 kD polypeptide, putative
[Ricinus communis]
Length = 194
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 7/160 (4%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFY +EH + L P L + VK++L G I+V + I G I
Sbjct: 1 MFYLSEIEHTLRLPPSLLSLPLQDAVKKELEIIFLDKVIANLGLCISVYDVTHIDGGFIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQF 119
PG G Y V++R +VFRPF GE++ A + + N G+ +G +I H +P +
Sbjct: 61 PGDGASTYTVRFRIVVFRPFVGEIIVAKLKESNNDGLRLSLGFFDDIYIPSHRLPKP-SY 119
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVGT-----RVDA 154
Y+++ + ED+++ I G RVD+
Sbjct: 120 SQQDPENRYQAIWIWEFVSEDNKMEFNIDGLDEIKFRVDS 159
>gi|145592427|ref|YP_001154429.1| DNA-directed RNA polymerase subunit E' [Pyrobaculum arsenaticum DSM
13514]
gi|379005594|ref|YP_005261266.1| DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form
[Pyrobaculum oguniense TE7]
gi|145284195|gb|ABP51777.1| DNA-directed RNA polymerase, subunit E' [Pyrobaculum arsenaticum
DSM 13514]
gi|375161047|gb|AFA40659.1| DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form
[Pyrobaculum oguniense TE7]
Length = 191
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 65/148 (43%)
Query: 2 FYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQP 61
F + E + + P FG L ET +L + EG + G+V+AV G I
Sbjct: 3 FRLVEAEDYVRIPPSEFGKPLEETALLQLKNRYEGRVLREVGYVVAVLNTKVSREGKIVF 62
Query: 62 GQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCP 121
G G + + + F P GE+++ VV V ++GM IGP+ FI+ + +
Sbjct: 63 GDGGTYHKAVFTMLAFMPLDGEIVEGVVENVREMGMLVRIGPVLGFINKIHVMDEPNIFF 122
Query: 122 NSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
+++ Y + + D +R +I G
Sbjct: 123 DASTKSYIGERTKRKVTVGDIVRARITG 150
>gi|342186474|emb|CCC95960.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 190
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 84/188 (44%), Gaps = 19/188 (10%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGT------CTGKYG---------FV 45
MFY + L+ I + P L + L VEGT G G
Sbjct: 1 MFYKVELQKTIKVEPFQLERTLNRQLACYLRKAVEGTPLNIPLVKGANGEAIRMNQNSSA 60
Query: 46 IAVTTIDSIGAGLIQP---GQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEI- 101
I + +D I ++ G V + ++Y A+VF+ +GEV+D +V V + G + ++
Sbjct: 61 IIIAVLDIINTEALEGRVLDDGSVSFLIQYEALVFKLHRGEVVDVMVLSVEREGWWGDVM 120
Query: 102 GPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIG 161
G +IS + +D + + + + G ++E + +R+++V + G+ A+G
Sbjct: 121 GVGRMYISRGQMDSDWVYESDGVKGIWITKDGSRSVKEGEIVRVRVVAETPQSEGVLAVG 180
Query: 162 TLMDDYLG 169
+++ +LG
Sbjct: 181 SMVGKHLG 188
>gi|363540279|ref|YP_004894570.1| mg519 gene product [Megavirus chiliensis]
gi|448825487|ref|YP_007418418.1| putative DNA-directed RNA polymerase subunit [Megavirus lba]
gi|350611444|gb|AEQ32888.1| putative DNA-directed RNA polymerase subunit [Megavirus chiliensis]
gi|444236672|gb|AGD92442.1| putative DNA-directed RNA polymerase subunit [Megavirus lba]
Length = 199
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 84/170 (49%), Gaps = 10/170 (5%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
+++ LE+++ L P Q+ + + L S+V+G T K G V+ + + G+I
Sbjct: 6 LYFQTQLENKVSLLPDQMNSQMDTHLLKNLESKVKGKVT-KDGIVLKINRLIDYQPGII- 63
Query: 61 PGQGFV---VYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDM 117
PG F VY VKY ++ P + VV + K + A+ GP+ + +++I +D
Sbjct: 64 PGSNFAGTAVYDVKYECLICSPTNNLNVICVVENIVKGFLIAKNGPVILIVQYNNINSD- 122
Query: 118 QFCPNSNPVCYKSVHGEVVIQEDDEIRLKI--VGTRVDASGIFAIGTLMD 165
+F S + Y S IQ+ D I++ + + + +D + I A+ L+D
Sbjct: 123 KFGIVSGNITYTS--NNTPIQKGDYIKVSVININSNIDENKIMAMCKLLD 170
>gi|68480238|ref|XP_715928.1| hypothetical protein CaO19.8073 [Candida albicans SC5314]
gi|68480354|ref|XP_715878.1| hypothetical protein CaO19.443 [Candida albicans SC5314]
gi|46437521|gb|EAK96866.1| hypothetical protein CaO19.443 [Candida albicans SC5314]
gi|46437573|gb|EAK96917.1| hypothetical protein CaO19.8073 [Candida albicans SC5314]
gi|238879020|gb|EEQ42658.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Candida
albicans WO-1]
Length = 195
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 14/171 (8%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + I + P F + ++ +L + G VI + I I GL++
Sbjct: 1 MFILSEISDLIRIPPSAFNVPIQHSISDELNKKYANKIIANLGLVITIWDILDIKDGLLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDM--- 117
PG G V++R+IV++PF+GE+L VT+ G+ + F IP D
Sbjct: 61 PGDGGSYVEVRFRSIVWKPFRGEILTGWVTECTAKGIKVRME----FFDEIWIPKDFLFE 116
Query: 118 --QFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDD 166
++ + Y E+ I +++IR RV+ + + ++D
Sbjct: 117 NCKYSESEQAWIYLLDENELFIDVNEKIRF-----RVEEENFYNVKPKLED 162
>gi|405120013|gb|AFR94784.1| RNA polymerase II subunit 7 [Cryptococcus neoformans var. grubii
H99]
Length = 83
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 44 FVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMF 98
++I+V TI IG G I P G + +Y AIV +PFKGEV+DA V VNK +F
Sbjct: 5 YIISVITITDIGEGKIIPSTGQAKFKTRYTAIVMKPFKGEVVDAKVVNVNKASLF 59
>gi|414886499|tpg|DAA62513.1| TPA: hypothetical protein ZEAMMB73_496623 [Zea mays]
Length = 218
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +EH++ + P L + +K +L K G ++V I SI G I
Sbjct: 89 MFSLSQIEHDLPMPPHLLSRPLPDAIKAELERLFLDKVITKLGLCVSVYDIRSIEGGSIH 148
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
PG+G Y V +R ++F+PF GE+L +T + G+
Sbjct: 149 PGEGCSTYKVSFRLLMFKPFNGEILVGRITGYDDKGL 185
>gi|425701415|gb|AFX92577.1| putative DNA-directed RNA polymerase subunit [Megavirus courdo11]
Length = 199
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 84/170 (49%), Gaps = 10/170 (5%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
+++ LE+++ L P Q+ + + L S+V+G T K G V+ + + G+I
Sbjct: 6 LYFQTQLENKVSLLPDQMNSQMDTHLLKNLESKVKGKVT-KDGIVLKINRLIDYQPGII- 63
Query: 61 PGQGFV---VYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDM 117
PG F VY VKY ++ P + VV + K + A+ GP+ + +++I +D
Sbjct: 64 PGSNFAGTAVYDVKYECLICSPTNNLNVICVVENIVKGFLIAKNGPVILIVQYNNINSD- 122
Query: 118 QFCPNSNPVCYKSVHGEVVIQEDDEIRLKI--VGTRVDASGIFAIGTLMD 165
+F S + Y + IQ+ D I++ + + + +D + I A+ L+D
Sbjct: 123 KFGIVSGNITY--TNNNTPIQKGDYIKVSVININSNIDENKIMAMCKLLD 170
>gi|448737484|ref|ZP_21719524.1| DNA-directed RNA polymerase subunit E' [Halococcus thailandensis
JCM 13552]
gi|445803628|gb|EMA53911.1| DNA-directed RNA polymerase subunit E' [Halococcus thailandensis
JCM 13552]
Length = 167
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 5/132 (3%)
Query: 26 VKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPG----QGFVVYPVKYRAIVFRPFK 81
VK+ L ++EG + G +++VT + IG G + PG +G V Y ++ A+ F P
Sbjct: 2 VKRLLQDKLEGRLDEEVGSIVSVTEVHDIGDGRVPPGRRDHEGSVYYEAEFDAVTFDPQM 61
Query: 82 GEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDD 141
EV+D V ++ G F IGP+ + H S +D + + S + D
Sbjct: 62 QEVIDGEVVEIVNFGAFVGIGPIDGLL-HVSQISDEYLAYDEDGQMLASRESNQTLGVGD 120
Query: 142 EIRLKIVGTRVD 153
+R +IV +D
Sbjct: 121 AVRARIVTKSID 132
>gi|414886500|tpg|DAA62514.1| TPA: hypothetical protein ZEAMMB73_496623 [Zea mays]
Length = 210
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +EH++ + P L + +K +L K G ++V I SI G I
Sbjct: 89 MFSLSQIEHDLPMPPHLLSRPLPDAIKAELERLFLDKVITKLGLCVSVYDIRSIEGGSIH 148
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
PG+G Y V +R ++F+PF GE+L +T + G+
Sbjct: 149 PGEGCSTYKVSFRLLMFKPFNGEILVGRITGYDDKGL 185
>gi|359415612|ref|ZP_09208044.1| DNA-directed RNA polymerase subunit E' [Candidatus Haloredivivus
sp. G17]
gi|358034031|gb|EHK02504.1| DNA-directed RNA polymerase subunit E' [Candidatus Haloredivivus
sp. G17]
Length = 189
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ +++E + + P + G + E+V L E EG G +I + + I G I+
Sbjct: 1 MYKRLTIEDSVRVPPEHLGGDVEESVLNGL-KEKEGEIHSDIGVIIGIEEVKEIEGGDIE 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLS--CFISH 110
P V Y Y+A+VF P EV+ V + + G F IGP C IS
Sbjct: 60 PEDAGVHYNAVYKALVFEPELHEVVTGEVVDLTEFGAFVRIGPFDGLCHISQ 111
>gi|305662653|ref|YP_003858941.1| DNA-directed RNA polymerase [Ignisphaera aggregans DSM 17230]
gi|304377222|gb|ADM27061.1| DNA-directed RNA polymerase [Ignisphaera aggregans DSM 17230]
Length = 182
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 3/148 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L + + P ++ E ++L EG G V+A+T I G I
Sbjct: 1 MFRVYKLRDVVRIDPSKLDREIEEVAFEELRKRYEGLKDRNLGIVLAITNIKVDPIGYIP 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
G G + V++ + + P GE+++ +V + ++G+ IGP+ F+ I D +++
Sbjct: 61 MGDGAPYHRVEFDVLTYVPIVGEIVEGIVETIGRMGITIRIGPIEGFVHISQISDDEVRY 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKI 147
P SN + K+ VI + D +R +I
Sbjct: 121 DPVSNTLICKNTKR--VISQGDIVRARI 146
>gi|312077201|ref|XP_003141199.1| RNA polymerase Rpb7 domain-containing protein [Loa loa]
gi|307763636|gb|EFO22870.1| RNA polymerase Rpb7 domain-containing protein [Loa loa]
Length = 225
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF LE + + P FG + ++L + G I + + IGA I
Sbjct: 1 MFVLAMLEDNVRIKPHQFGEPFEPMLMKRLNEQFANKIVPGLGLCIIIYDLVDIGASYIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVG-MFAEIGPLSCFISHHSIP 114
PG G VK+R +VFRPF EV++A V N G M + I FI H +P
Sbjct: 61 PGDGSTHTKVKFRFVVFRPFIDEVIEAKVLSSNAEGLMLSVIFFEDIFIPAHRLP 115
>gi|337284806|ref|YP_004624280.1| DNA-directed RNA polymerase subunit E' [Pyrococcus yayanosii CH1]
gi|334900740|gb|AEH25008.1| DNA-directed RNA polymerase subunit E' [Pyrococcus yayanosii CH1]
Length = 188
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 1/149 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ ++++ + + PR F E K L EGT G ++A+ + +G G+I
Sbjct: 1 MYKLVTVKDVVRIPPRMFTMDPKEAAKIVLRETYEGTYDRDDGVILAILEVKEVGDGIIV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + + +V++P EV++ +V G F IGP+ + + D
Sbjct: 61 PGDGATYHEAVFDVLVWKPEMHEVVEGIVVDAAPFGAFIRIGPMDGLVHISQLMDDYVVF 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
N + + +++ DE+R +I+
Sbjct: 121 DERNK-QFVGKEKKYLLKVGDEVRARIIA 148
>gi|307594773|ref|YP_003901090.1| DNA-directed RNA polymerase [Vulcanisaeta distributa DSM 14429]
gi|307549974|gb|ADN50039.1| DNA-directed RNA polymerase [Vulcanisaeta distributa DSM 14429]
Length = 196
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 62/149 (41%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++LE I + P FG L + L+ E G G +A+ ++ G++
Sbjct: 1 MFRVLTLEDYIRIPPSRFGEPLERVAFEVLWGEYVGRVERDVGVYVAIFDVEVSKRGVVI 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G V+++A+V+ P EV++ V + G F IGP+ I + D
Sbjct: 61 FGDGATYNRVRFKALVYTPLINEVVEGEVVRTEDFGAFVRIGPIDALIHRTQMMEDNVVL 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
+ + + D +R ++VG
Sbjct: 121 YDKQSGAFVGERSRRRLGRGDVVRARVVG 149
>gi|406607743|emb|CCH40848.1| DNA-directed RNA polymerase III subunit [Wickerhamomyces ciferrii]
Length = 206
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 1/148 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L I + P F + + + +L+ + GFV++V + I GL++
Sbjct: 1 MFILSRLSDLIRIPPDQFNKEPKKALLNELHKKYSNKIIQNLGFVVSVWDLIKIDDGLLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQF 119
PG G R IVFRPF GE+L + + G+ ++ FI ++ +F
Sbjct: 61 PGDGGSYIKCIVRVIVFRPFVGEILTGWIDKCTPDGLKIKMAFFDDIFIPKAALFEGCEF 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKI 147
N N + + ++ + +++IR ++
Sbjct: 121 SLNDNAWIWNADGAQLYLDVNEKIRFRV 148
>gi|326529803|dbj|BAK08181.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 210
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 65/150 (43%), Gaps = 9/150 (6%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +EH + + P L + +K +L G ++V I + G I
Sbjct: 1 MFVLSQIEHNLPMPPHLLNRPLVDAIKSELERLFLDKVVANLGLCVSVYDIRKVEGGFIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
PG+G Y V +R ++FRPF GEVL ++ ++ G+ + F S IP MQF
Sbjct: 61 PGEGCSTYTVSFRLLMFRPFIGEVLVGKISGYDEKGLQVSLD----FFSDICIPGHLMQF 116
Query: 120 CP---NSNPVCYKSVHG-EVVIQEDDEIRL 145
K+ G E+ + DDEIR
Sbjct: 117 GTVRGEDGRWALKTEDGDELPLDIDDEIRF 146
>gi|157873888|ref|XP_001685444.1| putative RNA polymerase-like protein [Leishmania major strain
Friedlin]
gi|68128516|emb|CAJ08648.1| putative RNA polymerase-like protein [Leishmania major strain
Friedlin]
Length = 199
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 85/195 (43%), Gaps = 28/195 (14%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEG-----------------TCTGKYG 43
MFY I L+ + + P L ++ L VEG T +
Sbjct: 1 MFYKIVLQRTVNVKPADLCNTLNRSLLTFLREAVEGKPLPSPDSIASIALDYVTASKSSA 60
Query: 44 FVIAVTTIDSIGAGLIQP---GQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAE 100
VIAV +D + A +Q G V + + Y A+V + +GEVLD +V+ V++ G +A
Sbjct: 61 VVIAV--LDILNAETLQGKVLDDGSVSFRLTYEAMVLKLHRGEVLDLLVSDVDETGFWAS 118
Query: 101 I-GPLSCFISHHSIPTDM-----QFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDA 154
+ G F++ + + DM ++ + + S I++D +RL+++ +
Sbjct: 119 VYGVNKLFVNRNQMGEDMKTGKSEWSFEAETAAWVSNDDRRSIKKDTMVRLRVIAETPQS 178
Query: 155 SGIFAIGTLMDDYLG 169
A+GT+ +LG
Sbjct: 179 ERGMAVGTIGAPFLG 193
>gi|452990025|gb|EME89780.1| hypothetical protein MYCFIDRAFT_213792 [Pseudocercospora
fijiensis CIRAD86]
Length = 224
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ ++L + +HP F +++ + ++ K G + ++ S GLI
Sbjct: 1 MYTLVTLADVVQIHPTDFHKPSIRSIEDFINAKYADKVIHKVGLCVGFHSLVSASEGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
G G V V +R IVFRPFKGE++ A +TQ N G+
Sbjct: 61 HGTGIVNVNVDFRLIVFRPFKGEIIRATITQSNMTGI 97
>gi|110667301|ref|YP_657112.1| DNA-directed RNA polymerase subunit E' [Haloquadratum walsbyi DSM
16790]
gi|385802723|ref|YP_005839123.1| DNA-directed RNA polymerase subunit E [Haloquadratum walsbyi C23]
gi|109625048|emb|CAJ51465.1| DNA-directed RNA polymerase subunit E [Haloquadratum walsbyi DSM
16790]
gi|339728215|emb|CCC39351.1| DNA-directed RNA polymerase subunit E [Haloquadratum walsbyi C23]
Length = 194
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L + + PR+ + VK+ L ++EG G V++V ++ IG G +
Sbjct: 1 MYKRVQLTDTVEVPPRHLADVTPQRVKRLLQDKLEGRMDEDIGSVVSVISVLDIGEGAVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+ V Y K+ AI F P EV+D V +V + G F IGP+ + H S +D
Sbjct: 61 PGRAGVYYEAKFDAITFDPAMQEVVDGEVVEVVEFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + D +R+++V +D
Sbjct: 120 YDGENQQLASTESNRTLGVGDSVRVRVVTKSID 152
>gi|390960923|ref|YP_006424757.1| DNA-directed RNA polymerase subunit E' [Thermococcus sp. CL1]
gi|390519231|gb|AFL94963.1| DNA-directed RNA polymerase subunit E' [Thermococcus sp. CL1]
Length = 185
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 66/157 (42%), Gaps = 1/157 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + + + + P+ F E K L EG G V+AV ++ IG G+I
Sbjct: 1 MYKLLKVRDVVRIPPKMFTMDPKEAAKLVLREAYEGIYDRDEGVVLAVMDVEEIGQGVIV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + V + +V++P EV+D V V G F IGP+ + + D
Sbjct: 61 PGDGATYHEVVFNVLVWKPEMHEVVDGEVIDVAPYGAFIRIGPMDGLVHISQLMDDYVVF 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGI 157
N + +++ DE R +I+ + + I
Sbjct: 121 DEKNK-QFIGKETNRILKLGDEARARIIAISIKSRVI 156
>gi|448090378|ref|XP_004197055.1| Piso0_004291 [Millerozyma farinosa CBS 7064]
gi|448094779|ref|XP_004198086.1| Piso0_004291 [Millerozyma farinosa CBS 7064]
gi|359378477|emb|CCE84736.1| Piso0_004291 [Millerozyma farinosa CBS 7064]
gi|359379508|emb|CCE83705.1| Piso0_004291 [Millerozyma farinosa CBS 7064]
Length = 195
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 2/149 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + I + P F + +V+ +L + G + V + I GL++
Sbjct: 1 MFVLSKITDLIRIPPHSFNEPIEVSVRNELNKKFANKVVNNLGLAVTVWDLIDIKDGLLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQF 119
PG G V +R +V++PF GEVL V+Q G+ +G F+ + + +F
Sbjct: 61 PGDGGSFVEVTFRCVVWKPFVGEVLTGWVSQCTAEGIKVRLGFFDDIFVPRNYFFENCEF 120
Query: 120 CPNSNPVCYK-SVHGEVVIQEDDEIRLKI 147
P ++ E+ I +++IR +I
Sbjct: 121 KPTEKAWVWRPDDETELYIDVNEKIRFRI 149
>gi|190348881|gb|EDK41428.2| hypothetical protein PGUG_05526 [Meyerozyma guilliermondii ATCC
6260]
Length = 194
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 69/159 (43%), Gaps = 21/159 (13%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F + E V +L+ + G V+AV + I G ++
Sbjct: 1 MFILSEVSDIVKIPPHTFHIPINEAVTNELHKKYANKVIANLGLVVAVWDLSEIHDGQLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVN----KVGM--FAEIGPLSCFISHHSIP 114
PG G V++R +V++PF GE+L VTQ K+GM F EI F+ +
Sbjct: 61 PGDGASFVKVRFRCVVWKPFVGEILSGWVTQCTAEGIKIGMRFFDEI-----FVPKNYFF 115
Query: 115 TDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKI-VGTRV 152
+ +F P V V + DDE L I V RV
Sbjct: 116 ENCEFKP---------VEKAWVWKPDDETELYIDVNERV 145
>gi|19112860|ref|NP_596068.1| DNA-directed RNA polymerase III complex subunit Rpc25
[Schizosaccharomyces pombe 972h-]
gi|74582844|sp|O94285.1|RPC8_SCHPO RecName: Full=DNA-directed RNA polymerase III subunit rpc8;
Short=RNA polymerase III subunit C8; AltName: Full=RNA
polymerase III subunit C25
gi|339961228|pdb|3AYH|B Chain B, Crystal Structure Of The C1725 SUBCOMPLEX FROM S. POMBE
RNA Polymerase Iii
gi|3850072|emb|CAA21883.1| DNA-directed RNA polymerase III complex subunit Rpc25
[Schizosaccharomyces pombe]
gi|76782157|gb|ABA54849.1| RNA polymerase III subunit Rpc25 [Schizosaccharomyces pombe]
Length = 203
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 15/158 (9%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF I +HP F E + ++++ + G I V IG G+I+
Sbjct: 1 MFLLSRFSDIISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQF- 119
G G V +R I+FRPF+GEV+ + ++ G+ I F IP DM F
Sbjct: 61 YGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEEGIRVTIS----FFDDIFIPKDMLFD 116
Query: 120 -C---PNSNPVCYK------SVHGEVVIQEDDEIRLKI 147
C P+ +K S E+ D+EIR +I
Sbjct: 117 PCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQI 154
>gi|453089152|gb|EMF17192.1| DNA-directed RNA polymerase III 25 kd polypeptide [Mycosphaerella
populorum SO2202]
Length = 224
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ I+L + +HP F +++ + ++ + G I ++ S GLI
Sbjct: 1 MYTLITLADVVQIHPNDFHKPSIRSIEDFINTKYADKVIHRVGLCIGFHSLISASEGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEI 101
G G V V +R +VFRPFKGE++ A +TQ ++ G++ +
Sbjct: 61 HGTGIVNVNVDFRLVVFRPFKGEIMRATITQSSQQGIYLSV 101
>gi|261403582|ref|YP_003247806.1| DNA-directed RNA polymerase subunit E' [Methanocaldococcus
vulcanius M7]
gi|261370575|gb|ACX73324.1| DNA-directed RNA polymerase [Methanocaldococcus vulcanius M7]
Length = 189
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 3/156 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + + + + P FG L ET+K+ L + EG GFV+++ I IG G +
Sbjct: 1 MYKILKIADVVKVPPEEFGKDLKETIKKILMEKYEGRLDKDIGFVLSIVDIKDIGDGKVV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
G G +PV + +V+ P E+++ V V + G F +GPL + I D + +
Sbjct: 61 HGDGSAYHPVIFETLVYLPEMYELVEGEVVDVVEFGSFVRLGPLDGLVHVSQIMDDYVSY 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDAS 155
P + K V++ D +R +IV + A
Sbjct: 121 DPKREAIIGKETGK--VLEIGDYVRARIVAISLKAE 154
>gi|409096803|ref|ZP_11216827.1| DNA-directed RNA polymerase subunit E' [Thermococcus zilligii AN1]
Length = 186
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 1/157 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + ++ + + PR F + E K+ L EG G V+AV ++ I G+I
Sbjct: 1 MYKLLKVKDVVRIPPRMFTMEPKEAAKEVLRKTYEGIYDRDEGVVLAVMDVEEISEGVIV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + V + +V++P E+++ V V G F IGP+ + + D
Sbjct: 61 PGDGATYHEVVFNVLVWQPHMHEIVEGEVIDVAPYGAFIRIGPMDGLVHISQLMDDYVVF 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGI 157
N + + ++ DE R +I+ V + I
Sbjct: 121 DEKNK-QFLGKETKRTLKLGDEARARIIAISVKSRVI 156
>gi|363807592|ref|NP_001241897.1| uncharacterized protein LOC100800770 [Glycine max]
gi|255644932|gb|ACU22966.1| unknown [Glycine max]
Length = 214
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFY +EH++ L P F + E + +L G I+V I SI G I
Sbjct: 1 MFYLSKIEHKLPLPPSRFVLPIREAIHMELEKLFLDKVIANLGLCISVYDIRSIDGGFIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G Y V + I+FRPF+ E++ A + + G+ IG
Sbjct: 61 PGDGAPTYTVVFNLIMFRPFEKEIITARLLSSDADGLRLTIG 102
>gi|70606624|ref|YP_255494.1| DNA-directed RNA polymerase subunit E' [Sulfolobus acidocaldarius
DSM 639]
gi|449066846|ref|YP_007433928.1| DNA-directed RNA polymerase subunit E' [Sulfolobus acidocaldarius
N8]
gi|449069118|ref|YP_007436199.1| DNA-directed RNA polymerase subunit E' [Sulfolobus acidocaldarius
Ron12/I]
gi|73920767|sp|P39466.2|RPOE_SULAC RecName: Full=DNA-directed RNA polymerase subunit E
gi|68567272|gb|AAY80201.1| DNA-directed RNA polymerase subunit E [Sulfolobus acidocaldarius
DSM 639]
gi|449035354|gb|AGE70780.1| DNA-directed RNA polymerase subunit E' [Sulfolobus acidocaldarius
N8]
gi|449037626|gb|AGE73051.1| DNA-directed RNA polymerase subunit E' [Sulfolobus acidocaldarius
Ron12/I]
Length = 183
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 2/170 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P YFG + E + L E + G V+ + + G I
Sbjct: 1 MFKLVRAKGIVRIPPEYFGQSVDEIAIKILRQEYQEKLIKDIGVVLGIVNAKASEEGFII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + V++ +V+ P EV++ V+QV+ G++ +GP+ + H S TD
Sbjct: 61 FGDGATYHEVEFDMLVYTPIIHEVIEGEVSQVDNYGVYVNMGPVDGLV-HISQITDDNLK 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIG-TLMDDYLG 169
+SN + IQ+ D +R I+ + + + I T+ YLG
Sbjct: 120 FDSNRGILIGEKSKKSIQKGDRVRAMIISASMSSGRLPRIALTMKQPYLG 169
>gi|401426977|ref|XP_003877972.1| putative RNA polymerase-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322494219|emb|CBZ29516.1| putative RNA polymerase-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 199
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 85/195 (43%), Gaps = 28/195 (14%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEG-----------------TCTGKYG 43
MFY I L+ + + P L ++ L VEG T +
Sbjct: 1 MFYKIVLQRTVNVKPADLCNTLNRSLLTFLREAVEGKPLPSPDSVASIALDYVTASKSSA 60
Query: 44 FVIAVTTIDSIGAGLIQP---GQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAE 100
VIAV +D + A +Q G V + + Y A+V + +GEVLD +V+ V++ G +A
Sbjct: 61 VVIAV--LDILNAETLQGKVLDDGSVSFRLTYEAMVLKLHRGEVLDLLVSDVDETGFWAS 118
Query: 101 I-GPLSCFISHHSIPTDM-----QFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDA 154
+ G F++ + + DM ++ + + S I++D +RL+++ +
Sbjct: 119 VYGVNKLFVNRNQMGEDMKTGRSEWSFEAETAAWVSNDDRRSIKKDTMVRLRVLAETPQS 178
Query: 155 SGIFAIGTLMDDYLG 169
A+GT+ +LG
Sbjct: 179 ERGMAVGTIGAPFLG 193
>gi|392585924|gb|EIW75262.1| hypothetical protein CONPUDRAFT_169647 [Coniophora puteana
RWD-64-598 SS2]
Length = 229
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ + LHP FG +K L + G +AV + S G+G ++
Sbjct: 1 MFQLSIIKDTVPLHPATFGQAPEAALKHALNKKYANRVLHNVGLCVAVFDLVSAGSGRVR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
G G + Y V +R +VFRPF GEV+ A V ++ G+ +G
Sbjct: 61 YGDGLLYYKVAFRMVVFRPFVGEVVIARVRSADEEGVRLTMG 102
>gi|383318512|ref|YP_005379353.1| DNA-directed RNA polymerase subunit E' [Methanocella conradii
HZ254]
gi|379319882|gb|AFC98834.1| DNA-directed RNA polymerase, subunit E' [Methanocella conradii
HZ254]
Length = 194
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 3/150 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L I + P+ L + + + + ++EG G ++AV I IG G I
Sbjct: 1 MYRKVRLVDIIRIPPQRLEEDLEQVINETIRDKLEGRIDKALGSIVAVLDIVDIGEGHIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
G G V Y V + AI +RP E+++ VV ++ G F +GP+ C + + + M +
Sbjct: 61 IGDGAVYYEVTFDAIAYRPELQEIVEGVVVEIVAFGAFVSVGPIDCLVHVSQVADEFMSY 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
+ + K + + E D++R +IV
Sbjct: 121 DEKNARLVSKETNKSLA--EGDKVRARIVA 148
>gi|357122866|ref|XP_003563135.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Brachypodium distachyon]
Length = 200
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 9/156 (5%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +EH + + P L + +K +L G ++V I ++ G I
Sbjct: 1 MFVLSQIEHNLPMPPHLLSRPLVDAIKTELERLFLDKVITNLGLCVSVYDILAVEGGFIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
PG+G Y V +R ++FRPF GEVL ++ ++ G+ + F S IP MQ+
Sbjct: 61 PGEGCSTYKVSFRLLMFRPFIGEVLVGKISGYDEKGLQVSLD----FFSDICIPGHLMQY 116
Query: 120 CP---NSNPVCYKSVHG-EVVIQEDDEIRLKIVGTR 151
K+ G E+ + DDEIR + G +
Sbjct: 117 GTVRGEDGRWMLKTDDGDELYLDIDDEIRFLVSGIK 152
>gi|313225157|emb|CBY20950.1| unnamed protein product [Oikopleura dioica]
gi|313240114|emb|CBY32466.1| unnamed protein product [Oikopleura dioica]
Length = 199
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ E + + P F L ++ + +L ++ + G I + I +G I
Sbjct: 1 MFELVTFEDYVKIEPVLFNKDLADSCRTELNRKLANKVYQRAGLCICMHDILKVGDSAIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQF 119
PG+G +K+R IVFRPF EVL V ++ G+ IG F+ IP +F
Sbjct: 61 PGEGLCRTYIKFRFIVFRPFIREVLVGKVRSCSREGLRLTIGFFDDIFVPKKYIPAPNEF 120
>gi|225437229|ref|XP_002281971.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Vitis
vinifera]
gi|297735498|emb|CBI17938.3| unnamed protein product [Vitis vinifera]
Length = 192
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 1/123 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFY +EH + L P L E +K +L S G I+V I SI G +
Sbjct: 1 MFYLSLIEHTLRLPPHLLDLPLNEAIKGELESLFLDKVIANLGLCISVYDIRSIDGGFVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQF 119
PG G Y V++R ++FRPF GE++ A + + + G+ +G +I H +P
Sbjct: 61 PGDGASTYTVEFRLVMFRPFVGEIITAKLKESDANGLRLSLGFFDDIYIPVHLMPNPCHC 120
Query: 120 CPN 122
PN
Sbjct: 121 EPN 123
>gi|356572779|ref|XP_003554543.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc8-like
[Glycine max]
Length = 212
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFY +EHE+ L P + E + +L G I+V I SI G I
Sbjct: 1 MFYLSKIEHELPLPPSRLVLPIREAIHMELEKLFLDKVIANLGLCISVYDIRSIDGGFIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G Y V + I+FRPF+ E++ A + + G+ IG
Sbjct: 61 PGDGAPTYTVVFNLIMFRPFEKEIITARLLSSDADGLRLTIG 102
>gi|409041829|gb|EKM51314.1| hypothetical protein PHACADRAFT_263362 [Phanerochaete carnosa
HHB-10118-sp]
Length = 226
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 1/125 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ + +HP +FG + + +L + G ++V + +G G ++
Sbjct: 1 MFVLSIIKDTVAVHPSHFGLPPQQAITNELNKKYANRVLHDVGLCVSVFDLAEVGEGKVR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQF 119
G GF+ Y V +R +VFRPF EV+ A V ++ G+ +G +I +P F
Sbjct: 61 YGDGFLWYKVVFRLVVFRPFPSEVILAKVKSSDEDGIRLTLGFFDDVYIPRIFLPEPSAF 120
Query: 120 CPNSN 124
PN
Sbjct: 121 DPNER 125
>gi|146181772|ref|XP_001023380.2| RNA polymerase Rpb7, N-terminal domain containing protein
[Tetrahymena thermophila]
gi|146144073|gb|EAS03135.2| RNA polymerase Rpb7, N-terminal domain containing protein
[Tetrahymena thermophila SB210]
Length = 173
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 67/129 (51%), Gaps = 12/129 (9%)
Query: 1 MFYHISLEHEIL-LHPRYFGPQL---------YETVKQKLYSEVEGTCTGKYGFVIAVTT 50
MFYH S IL +HP + G + + +K++L +VEG + ++G++I V
Sbjct: 1 MFYHTSGLRTILQIHPTHMGMLIGNDKVNLNNNDLLKKELIEKVEGKKSNEHGYIILVVN 60
Query: 51 IDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCF-IS 109
+ + LI GF+ +++ A+ F+P E +D +T++ + + +GP++ F +
Sbjct: 61 LRYMSKPLID-YDGFIKVEIQFDALTFKPQLKEYIDIQITEIKQNHIAGSVGPMNIFYVP 119
Query: 110 HHSIPTDMQ 118
+ +P +Q
Sbjct: 120 NRKLPQQLQ 128
>gi|224107919|ref|XP_002314653.1| predicted protein [Populus trichocarpa]
gi|222863693|gb|EEF00824.1| predicted protein [Populus trichocarpa]
Length = 189
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 39 TGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMF 98
+ +G+ +AVT + SIG G + G V++ V+++ F P KGE+L VV + + G+
Sbjct: 43 SKDHGYFLAVTNLKSIGKGEVVNKSGDVLFHVEFKCRTFMPMKGEILQGVVHRTFRHGVL 102
Query: 99 AEIGPLS-CFISHHSIPTDMQFCPNSNPV 126
GP+ F+S +P + Q+ NPV
Sbjct: 103 LRCGPVKYIFLSARKMP-NYQYTSEENPV 130
>gi|448730672|ref|ZP_21712977.1| DNA-directed RNA polymerase subunit E' [Halococcus saccharolyticus
DSM 5350]
gi|445793113|gb|EMA43703.1| DNA-directed RNA polymerase subunit E' [Halococcus saccharolyticus
DSM 5350]
Length = 190
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 5/157 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L I + P G VK+ L ++EG G V++V + IG G +
Sbjct: 1 MYKRVELTDTIEVPPPLLGDVSPGLVKRLLQDKLEGRLDEDVGSVVSVIDVHDIGDGRVL 60
Query: 61 PG----QGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
PG +G V Y + A+ F P EV+D V ++ G F IGP+ + H S +D
Sbjct: 61 PGRRGHEGSVYYEATFDAVTFDPQMQEVVDGEVVEIVNFGAFVGIGPVDGLL-HVSQISD 119
Query: 117 MQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + D +R +IV +D
Sbjct: 120 EYLAFDEENQQLASRESNQTLGVGDAVRARIVTKSID 156
>gi|50422141|ref|XP_459633.1| DEHA2E07414p [Debaryomyces hansenii CBS767]
gi|49655301|emb|CAG87863.1| DEHA2E07414p [Debaryomyces hansenii CBS767]
Length = 196
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 8/147 (5%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L + + P F + E++ +L + G VI++ + I GL++
Sbjct: 1 MFILSKLSDLVRIPPHTFNIPIQESITNELNKKFANKVISNLGLVISLWDLIDIKDGLLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G V +R +V++PF GEVL V++ + G+ ++ F IP + F
Sbjct: 61 PGDGASFVEVTFRCVVWKPFIGEVLTGWVSECSAEGIKVKLE----FFDEIFIPKNYFF- 115
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKI 147
+K V V + DD+ L I
Sbjct: 116 ---ENCLFKPVEKAWVWKPDDDTELYI 139
>gi|307107725|gb|EFN55967.1| hypothetical protein CHLNCDRAFT_145291 [Chlorella variabilis]
Length = 221
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +LE + + P+ G + L G V+ + I SIG G +
Sbjct: 1 MFILSTLEDNVRIAPQDLGKPPAVAITTALEKSFLDKAVAGLGLVVTLYDILSIGDGYVY 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIP 114
P G Y V +R +VFRPF+ E+L V ++ K GM+ ++G I H +P
Sbjct: 61 PSDGGAHYKVCFRVVVFRPFRDELLVGKVHKMTKEGMYVDLGFFKDVIIPPHGMP 115
>gi|313125280|ref|YP_004035544.1| DNA-directed RNA polymerase subunit e' [Halogeometricum borinquense
DSM 11551]
gi|448287123|ref|ZP_21478339.1| DNA-directed RNA polymerase subunit E' [Halogeometricum borinquense
DSM 11551]
gi|312291645|gb|ADQ66105.1| DNA-directed RNA polymerase, subunit E' [Halogeometricum
borinquense DSM 11551]
gi|445572869|gb|ELY27399.1| DNA-directed RNA polymerase subunit E' [Halogeometricum borinquense
DSM 11551]
Length = 192
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + P + + VK+ L ++EG G V++V + IG G +
Sbjct: 1 MYKRVRLKDTVEVPPEHLADVTPQRVKRLLQDKLEGRMDEDVGSVVSVVNVHDIGEGTVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+ V Y ++ A+ F P EV+D V +V + G F IGP+ + H S +D
Sbjct: 61 PGRAGVYYEAEFDAVTFDPDMQEVIDGEVVEVVEFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + D +R+++V +D
Sbjct: 120 YDGENQQLASTESNRTLAVGDSVRVRVVTKSID 152
>gi|448313091|ref|ZP_21502817.1| DNA-directed RNA polymerase subunit E' [Natronolimnobius
innermongolicus JCM 12255]
gi|445599168|gb|ELY53206.1| DNA-directed RNA polymerase subunit E' [Natronolimnobius
innermongolicus JCM 12255]
Length = 191
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + P G + VK+ L ++EG + G V++VT ++ IG G +
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSPDLVKKLLQDKLEGRMDEEVGSVVSVTNVEDIGEGTVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y ++ A+ F P EV+D V +V + G F IGP+ + H S +D
Sbjct: 61 PNRPGVYYEAEFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + DD +R +IV +D
Sbjct: 120 FDGENQQLASNESNRTLGVDDAVRARIVTKSID 152
>gi|146413070|ref|XP_001482506.1| hypothetical protein PGUG_05526 [Meyerozyma guilliermondii ATCC
6260]
Length = 194
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 12/154 (7%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F + E V +L+ + G V+AV + I G ++
Sbjct: 1 MFILSEVSDIVKIPPHTFHIPINEAVTNELHKKYANKVIANLGLVVAVWDLLEIHDGQLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVN----KVGM--FAEIGPLSCFISHHSIP 114
PG G V++R +V++PF GE+L VTQ K+GM F EI F+ +
Sbjct: 61 PGDGASFVKVRFRCVVWKPFVGEILSGWVTQCTAEGIKIGMRFFDEI-----FVPKNYFF 115
Query: 115 TDMQFCPNSNPVCYK-SVHGEVVIQEDDEIRLKI 147
+ +F P +K E+ I ++ +R ++
Sbjct: 116 ENCEFKPVEKAWVWKPDDETELYIDVNERVRFRV 149
>gi|449548373|gb|EMD39340.1| hypothetical protein CERSUDRAFT_134380 [Ceriporiopsis subvermispora
B]
Length = 234
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L+ + +HP FG + + +L + G + V + +G G ++
Sbjct: 1 MFQLSILKDTVAVHPSNFGLPPEQAITNELNKKYANRVLHDVGLCVCVFDLSEVGEGKVR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
G GF+ Y V +R +VFRPF EVL A V ++ G+ +G
Sbjct: 61 YGDGFLWYKVVFRLVVFRPFASEVLLAKVKSSDEDGIRLTLG 102
>gi|424812204|ref|ZP_18237444.1| DNA-directed RNA polymerase, rpoE [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756426|gb|EGQ40009.1| DNA-directed RNA polymerase, rpoE [Candidatus Nanosalinarum sp.
J07AB56]
Length = 185
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 5 ISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQG 64
+++E + + P + G L +V+ L S + G G +AV ++++ G I+P
Sbjct: 1 MTVEDTVRIPPEHLGDDLQSSVEDGLRSTLAGRIEPDVGVFVAVEEVNTVEGGEIRPEDA 60
Query: 65 FVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLS--CFISH 110
V Y V+++A+VF P EV+ + G F IGP C +S
Sbjct: 61 GVHYDVEFQALVFEPELHEVVRGESVDLTSFGAFIRIGPFDGLCHVSQ 108
>gi|167998266|ref|XP_001751839.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696937|gb|EDQ83274.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 189
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 67/153 (43%), Gaps = 2/153 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L+ + + P+ L + + Q+L + G + + I + G +
Sbjct: 1 MFMLAELQDTLKVPPQSLSLALQDAITQELANLYFDKVLKDLGLCVTLYDISKVEGGSVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL--SCFISHHSIPTDMQ 118
PG G + V +R ++FRPF GEVL A + + +K G++ +G I H + +
Sbjct: 61 PGDGAPHFTVDFRLVMFRPFVGEVLIAKLKRCDKAGLYLSLGSFFEDIHIPEHLLQQPSK 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR 151
F + ++ + ++++R ++V +
Sbjct: 121 FDEEEKLWIWNYNGADMFMDLEEDVRFRVVQVK 153
>gi|332796396|ref|YP_004457896.1| DNA-directed RNA polymerase RpoE [Acidianus hospitalis W1]
gi|332694131|gb|AEE93598.1| DNA-directed RNA polymerase, RpoE [Acidianus hospitalis W1]
Length = 175
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 2/157 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF I + + + P YFG +L + + L SE + G V+ V + + G I
Sbjct: 1 MFKIIKAKGVVRIPPEYFGEELDKIALEILKSEYQDKIFKDLGLVLGVLSAKASEEGQII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + V++ + + P EV++ V +V+ G++ +GP+ + H S D F
Sbjct: 61 FGDGATYHEVEFELLAYVPALQEVVEGTVAEVDNYGIYVNLGPMDGLV-HISQIADDTFK 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVG-TRVDASG 156
+S + V+Q+ D +R +IV + V +SG
Sbjct: 120 FDSTRGVLIGEKSKKVLQKGDLVRARIVTVSAVSSSG 156
>gi|76803168|ref|YP_331263.1| DNA-directed RNA polymerase subunit E' [Natronomonas pharaonis DSM
2160]
gi|76559033|emb|CAI50631.1| DNA-directed RNA polymerase subunit E [Natronomonas pharaonis DSM
2160]
Length = 189
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + PR+ E VK+ L ++EG G +++VT + IG G +
Sbjct: 1 MYKRVRLKDTVEVPPRHLADVSPELVKRLLQDKLEGQMDEDVGSIVSVTAVHDIGDGAVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y ++ A+ F P EV+D V +V G F IGP+ + H S +D
Sbjct: 61 PNRPGVYYEAEFDAVTFDPQMQEVVDGEVVEVVNFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S V+ D +R +IV +D
Sbjct: 120 YDEENQQLASRDSNRVLSVGDSVRARIVTKSID 152
>gi|170595314|ref|XP_001902331.1| RNA polymerase Rpb7, N-terminal domain containing protein [Brugia
malayi]
gi|158590049|gb|EDP28820.1| RNA polymerase Rpb7, N-terminal domain containing protein [Brugia
malayi]
Length = 220
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF LE + + P FG + ++L ++ G I + + +G I
Sbjct: 1 MFVLAVLEDTVRIKPHQFGESFEPMLMKRLNEQLANKIVPGLGLCIIIYDLLDVGVSYIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVG-MFAEIGPLSCFISHHSIP 114
PG G VK+R +VFRPF E+++A V N G M + I FI H +P
Sbjct: 61 PGDGSTHTKVKFRYVVFRPFIDEIIEAKVLSSNAEGLMLSVIFFEDIFIPAHRLP 115
>gi|298709254|emb|CBJ31193.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 279
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Query: 7 LEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFV 66
L I + P F + + ++ ++ G I + + +SIG + P G
Sbjct: 24 LRMTIWVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAA 83
Query: 67 VYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPN 122
Y V++R +VFRPF GE+L V+ K G+ + F + SIP D+ P+
Sbjct: 84 HYKVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLD----FFENASIPKDLLQSPS 135
>gi|320165968|gb|EFW42867.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 207
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 59/153 (38%), Gaps = 2/153 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + I +HP F + ++ G I + + +G I
Sbjct: 1 MFVVSTFRNTIRIHPADFAKDPQTAIADEINRLYANKVVLNIGLCICLYDLTEVGDAYIV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL--SCFISHHSIPTDMQ 118
G V +R IVFRPF+GEV+ + + G+ IG FI ++
Sbjct: 61 SSDGSTRTEVVFRLIVFRPFEGEVVSGTIRRSIPSGIIVNIGTFFDDVFIPAENLQPGTI 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR 151
F P+ + E+ ++ D IR ++V R
Sbjct: 121 FNPDLQEFVWTFAEQELRMEADSRIRFRVVADR 153
>gi|433639500|ref|YP_007285260.1| DNA-directed RNA polymerase subunit E' [Halovivax ruber XH-70]
gi|448376929|ref|ZP_21559929.1| DNA-directed RNA polymerase subunit E' [Halovivax asiaticus JCM
14624]
gi|433291304|gb|AGB17127.1| DNA-directed RNA polymerase subunit E' [Halovivax ruber XH-70]
gi|445656665|gb|ELZ09499.1| DNA-directed RNA polymerase subunit E' [Halovivax asiaticus JCM
14624]
Length = 189
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + P G + VK+ L ++EG + G +++V +D IG G +
Sbjct: 1 MYKRVRLKDTVEVPPEALGDVSPDLVKRLLQDKLEGRMDEEVGSIVSVVDVDDIGEGTVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y ++ A+ F P EV+D V +V + G F IGP+ + H S +D
Sbjct: 61 PNEPGVYYEAEFDAVTFDPKMQEVVDGTVVEVVEFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + + +D IR +IV +D
Sbjct: 120 FDRENQRLSSSESDQALGVEDAIRTRIVTKSID 152
>gi|146096465|ref|XP_001467814.1| putative RNA polymerase-like protein [Leishmania infantum JPCM5]
gi|398020774|ref|XP_003863550.1| RNA polymerase-like protein, putative [Leishmania donovani]
gi|134072180|emb|CAM70881.1| putative RNA polymerase-like protein [Leishmania infantum JPCM5]
gi|322501783|emb|CBZ36865.1| RNA polymerase-like protein, putative [Leishmania donovani]
Length = 199
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 85/195 (43%), Gaps = 28/195 (14%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEG-----------------TCTGKYG 43
MFY + L+ + + P L ++ L VEG T +
Sbjct: 1 MFYKVVLQRTVNVKPADLCNTLNRSLLTFLRQAVEGKPLPSPDSVASIALDYVTASKSSA 60
Query: 44 FVIAVTTIDSIGAGLIQP---GQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAE 100
VIAV +D + A +Q G V + + Y A+V + +GEVLD +V+ V++ G +A
Sbjct: 61 VVIAV--LDILNAETLQGKVLDDGSVSFRLTYEAMVLKLHRGEVLDLLVSDVDETGFWAS 118
Query: 101 I-GPLSCFISHHSIPTDM-----QFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDA 154
+ G F++ + + D+ ++ + + S I++D +RL+++ +
Sbjct: 119 VYGVNKLFVNRNQMGEDLKTGRSEWSFEAETAAWVSNDDRRSIKKDTMVRLRVIAETPQS 178
Query: 155 SGIFAIGTLMDDYLG 169
A+GT+ +LG
Sbjct: 179 ERGMAVGTIGAPFLG 193
>gi|433589883|ref|YP_007279379.1| DNA-directed RNA polymerase subunit E' [Natrinema pellirubrum DSM
15624]
gi|448333095|ref|ZP_21522309.1| DNA-directed RNA polymerase subunit E' [Natrinema pellirubrum DSM
15624]
gi|448378798|ref|ZP_21560830.1| DNA-directed RNA polymerase subunit E' [Haloterrigena
thermotolerans DSM 11522]
gi|433304663|gb|AGB30475.1| DNA-directed RNA polymerase subunit E' [Natrinema pellirubrum DSM
15624]
gi|445623979|gb|ELY77374.1| DNA-directed RNA polymerase subunit E' [Natrinema pellirubrum DSM
15624]
gi|445666254|gb|ELZ18922.1| DNA-directed RNA polymerase subunit E' [Haloterrigena
thermotolerans DSM 11522]
Length = 189
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + P G + VK+ L ++EG + G V++VT + IG G +
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSPDRVKRLLQDKLEGRMDEEVGSVVSVTEVHDIGEGTVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y ++ A+ F P EV+D V +V + G F IGP+ + H S +D
Sbjct: 61 PNRPGVYYEAEFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + + DD +R +IV +D
Sbjct: 120 FDGENQRLSSNESDRALGVDDAVRARIVTKSID 152
>gi|256810821|ref|YP_003128190.1| DNA-directed RNA polymerase subunit E' [Methanocaldococcus fervens
AG86]
gi|256794021|gb|ACV24690.1| DNA-directed RNA polymerase [Methanocaldococcus fervens AG86]
Length = 187
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 6/173 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + + + + P FG L ET+K+ L + EG GF++++ + +G G +
Sbjct: 1 MYKILEIADVVRVPPEEFGKDLKETIKKILIEKYEGRLDKDVGFILSIVDVKEVGDGKVV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
G G +PV + +V+ P E+++ V V + G F +GPL I I D + +
Sbjct: 61 HGDGSAYHPVVFETLVYVPEMYELVEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSY 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDAS---GIFAIGTLMDDYLG 169
P + K V++ D +R +IV + A G T+ YLG
Sbjct: 121 DPKREAIIGKETGK--VLEIGDYVRARIVAISLKAERKRGSKIALTMRQPYLG 171
>gi|169868152|ref|XP_001840650.1| polymerase III polypeptide H [Coprinopsis cinerea okayama7#130]
gi|116498254|gb|EAU81149.1| polymerase III polypeptide H [Coprinopsis cinerea okayama7#130]
Length = 227
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ + +HP++FG E + +L + G I V + +G G ++
Sbjct: 1 MFSLAVIKDTVPIHPQHFGIPPEEAITAELNKKYANRVLHDVGLCICVFDLTEVGDGRVR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
G GF+ Y V +R VFRPF EV+ A V ++ G+ +G
Sbjct: 61 YGDGFLWYKVTFRMTVFRPFVSEVVVAKVKSSDERGIRLTMG 102
>gi|325958359|ref|YP_004289825.1| DNA-directed RNA polymerase [Methanobacterium sp. AL-21]
gi|325329791|gb|ADZ08853.1| DNA-directed RNA polymerase [Methanobacterium sp. AL-21]
Length = 195
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 1/148 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ +E + + P F L + + L GT K G ++ V I+ +G G +
Sbjct: 1 MYLISKIEDTVRIPPNRFEDPLEDVAVEILNESYVGTIDKKLGLMVTVKEIEELGIGKVI 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + V + A+ F+P E+++ V ++ + G F IGP+ + H S TD
Sbjct: 61 MGDGAAYHDVVFNALFFKPELHEIVEGEVIEITEFGAFIRIGPMDGLV-HVSQVTDDYIN 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIV 148
+ + ++E + +R +IV
Sbjct: 120 YDGKRGALMGKESKKTLEEGNNVRARIV 147
>gi|398411157|ref|XP_003856922.1| hypothetical protein MYCGRDRAFT_31431, partial [Zymoseptoria
tritici IPO323]
gi|339476807|gb|EGP91898.1| hypothetical protein MYCGRDRAFT_31431 [Zymoseptoria tritici IPO323]
Length = 223
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%)
Query: 11 ILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPV 70
+ + P+ F + ++ + ++ K G + ++ S GLI G G V V
Sbjct: 6 VQIPPKDFSKPSFRAIEDFINTKYADKVIHKVGLCLGFHSLVSTSEGLIGHGTGIVNVNV 65
Query: 71 KYRAIVFRPFKGEVLDAVVTQVNKVGMFAEI 101
+R IVFRPFKGE++ A +TQ N G++ +
Sbjct: 66 DFRLIVFRPFKGEIIRATITQSNPTGIYLSV 96
>gi|336254874|ref|YP_004597981.1| DNA-directed RNA polymerase [Halopiger xanaduensis SH-6]
gi|335338863|gb|AEH38102.1| DNA-directed RNA polymerase [Halopiger xanaduensis SH-6]
Length = 192
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + P G + VK+ L ++EG + G +++VT + IG G +
Sbjct: 1 MYKRVRLKDTVEVPPEALGDVSPDLVKRLLQDKLEGRMDEEVGSIVSVTEVHDIGQGTVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y + A+ F P EV+D V +V + G F IGP+ + H S +D
Sbjct: 61 PNEPGVYYEADFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + + DD IR +IV +D
Sbjct: 120 FDGENQRLSSNESDRALGVDDAIRTRIVTKSID 152
>gi|451927420|gb|AGF85298.1| DNA-directed RNA polymerase subunit [Moumouvirus goulette]
Length = 198
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 10/170 (5%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
++Y LE+++ L P + E + + L S+V+G T K G V+ + + S G+I
Sbjct: 6 LYYQTQLENKVSLLPDQMDSDMDEHLLKNLESKVKGKVT-KDGIVLKINRLISYEPGII- 63
Query: 61 PGQGFV---VYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDM 117
P F VY VK+ ++ P + VV + K + A+ GP++ I +++I D
Sbjct: 64 PKANFASTAVYDVKFECLICSPTINLTIICVVENIIKGYLIAKNGPVTVVIMYNNINNDK 123
Query: 118 QFCPNSNPVCYKSVHGEVVIQEDDEIRLKIV--GTRVDASGIFAIGTLMD 165
+ N V + + + IQ+ D I++ +V + +D + I + L+D
Sbjct: 124 FTIVSGNIV---NNNNKTAIQKGDFIKVSVVNINSSIDENKILTMCKLID 170
>gi|451849514|gb|EMD62817.1| hypothetical protein COCSADRAFT_144644 [Cochliobolus sativus
ND90Pr]
Length = 214
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 66/148 (44%), Gaps = 1/148 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +++ I + P+ F + +K + + G + + + S GLI
Sbjct: 1 MFILTTIQDLIQIKPQDFEKPSAQAIKDVINDKYSNRIIPNIGLCLCMWDLLSASEGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLS-CFISHHSIPTDMQF 119
G G V V++R VFRPF+GE++ + N+ G+ ++ S FI + ++P + F
Sbjct: 61 HGTGLVNVNVEFRMTVFRPFRGEIIYGRIKSSNQEGIIIDLEFTSETFIPYQNLPENSSF 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKI 147
N + S E+ + + + ++
Sbjct: 121 SQAENVWVWNSEGTELFFDKGEPVLFRV 148
>gi|284166710|ref|YP_003404989.1| DNA-directed RNA polymerase [Haloterrigena turkmenica DSM 5511]
gi|284016365|gb|ADB62316.1| DNA-directed RNA polymerase [Haloterrigena turkmenica DSM 5511]
Length = 191
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + P G + VK+ L ++EG + G V++VT + IG G +
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSPDLVKRLLQDKLEGRMDEEVGSVVSVTEVHDIGEGTVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y ++ A+ F P EV+D V +V + G F IGP+ + H S +D
Sbjct: 61 PNRPGVYYEAEFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + + DD +R +IV +D
Sbjct: 120 FDGENQRLSSNESDRALGVDDAVRARIVTKSID 152
>gi|20094887|ref|NP_614734.1| DNA-directed RNA polymerase subunit E' [Methanopyrus kandleri AV19]
gi|19888120|gb|AAM02664.1| DNA-directed RNA polymerase subunit E' [Methanopyrus kandleri AV19]
Length = 183
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 7/161 (4%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTC-----TGK-YGFVIAVTTIDSI 54
M+ + LE + + P F + + V + L ++VEG TG+ GFV+ V I +
Sbjct: 1 MYELVELETTVRIPPTQFTSDVEDAVLKALENDVEGKLFREDDTGEPIGFVVFVDEILDV 60
Query: 55 GAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIP 114
I PG G + V++RA+VFRP + EV+ VT+V + G F +GPL + I
Sbjct: 61 ENEGIFPGDGASYHRVRFRALVFRPVEREVVVGEVTRVKEYGAFVRLGPLDGLLHVSQIL 120
Query: 115 TDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDAS 155
+ + + G ++ D I++ I+G ++
Sbjct: 121 DEYMYYDGAREALVGEETGR-ELKRGDVIKVMIIGVSLNEE 160
>gi|118792599|ref|XP_320407.3| AGAP012122-PA [Anopheles gambiae str. PEST]
gi|116116974|gb|EAA00210.3| AGAP012122-PA [Anopheles gambiae str. PEST]
Length = 244
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L+ + + P FG +L E +K ++ ++ G IA+ I +G +I
Sbjct: 1 MFVLAELKDNVRIAPELFGLKLPEAIKDEINRKLANKVLLNVGLCIALKDIVKLGDSIIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R IVFRP G+V+ + ++ G+ +G
Sbjct: 61 PGDGASHTEVNFRYIVFRPMIGDVITGKIRSCSREGVHITLG 102
>gi|320101521|ref|YP_004177113.1| DNA-directed RNA polymerase subunit E' [Desulfurococcus mucosus DSM
2162]
gi|319753873|gb|ADV65631.1| DNA-directed RNA polymerase, subunit E' [Desulfurococcus mucosus
DSM 2162]
Length = 189
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 11/156 (7%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTG--------KYGFVIAVTTID 52
M+ I + + + P FG + ++L S EG T K G V+ + +
Sbjct: 1 MYSLIKIRDVVRIPPSKFGRPVKNVALEELRSRYEGAITSIETPRGESKLGIVVTIVDAN 60
Query: 53 SIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHS 112
G I PG G + V+ A+VF PF EV++ V K G++ +G L FI +
Sbjct: 61 VDENGRILPGDGATYHDVEMYALVFTPFIKEVVEGEAVTVTKSGIYVNLGVLDGFIHINQ 120
Query: 113 IPTD-MQFCPNSNPVCYKSVHGEVVIQEDDEIRLKI 147
+ + + F P + + VI++ D +R KI
Sbjct: 121 VSEEKVVFDPARTALVLE--ESRRVIEKGDVLRAKI 154
>gi|449297230|gb|EMC93248.1| hypothetical protein BAUCODRAFT_141757 [Baudoinia compniacensis
UAMH 10762]
Length = 214
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ +S+ + LHP F ++ L ++ K G + ++ GLI
Sbjct: 1 MYILVSIADVVQLHPSDFHKASRRAIEDWLNAKYADKVIHKVGLCVGFHSLIKASEGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
G G V V +R +VFRPFKGE++ V++ + GM G
Sbjct: 61 HGTGIVNVNVDFRVVVFRPFKGEIIRGVISASTENGMQMSTG 102
>gi|359479790|ref|XP_002271507.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like [Vitis
vinifera]
gi|296086693|emb|CBI32328.3| unnamed protein product [Vitis vinifera]
Length = 192
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 6/153 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ +EH + L P L E +K +L S G I+V I SI G +
Sbjct: 1 MFFLSLIEHTLRLPPHLLDLPLNEAIKGELESLFLDKVLANLGLCISVYDIRSIDGGFVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQF 119
PG G Y V++R ++FRPF GE++ A + + + G+ +G +I H +P
Sbjct: 61 PGDGASTYTVEFRLVMFRPFVGEIITAKLKESDANGLQLSLGFFDDIYIPVHLMPNPCHC 120
Query: 120 CP---NSNPVCYKSVHGEVVIQED--DEIRLKI 147
P N + V + + E D DEIR ++
Sbjct: 121 EPDPENKSQVIWIWDYQEQKFPIDGLDEIRFQV 153
>gi|451992730|gb|EMD85209.1| hypothetical protein COCHEDRAFT_1229156 [Cochliobolus
heterostrophus C5]
Length = 213
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 66/148 (44%), Gaps = 1/148 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +++ I + P+ F + +K + + G + + + S GLI
Sbjct: 1 MFILTTIQDLIQIKPQDFEKPSAQAIKDVINDKYSNRIIPNIGLCLCMWDLLSASEGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLS-CFISHHSIPTDMQF 119
G G V V++R VFRPF+GE++ + N+ G+ ++ S FI + ++P + F
Sbjct: 61 HGTGLVNVNVEFRMTVFRPFRGEIIYGRIKSSNQEGIIIDLEFTSEIFIPYQNLPENSSF 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKI 147
N + S E+ + + + ++
Sbjct: 121 SQAENVWVWNSEGTELFFDKGEPVLFRV 148
>gi|452206398|ref|YP_007486520.1| DNA-directed RNA polymerase subunit E [Natronomonas moolapensis
8.8.11]
gi|452082498|emb|CCQ35756.1| DNA-directed RNA polymerase subunit E [Natronomonas moolapensis
8.8.11]
Length = 189
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + PR+ E V++ L ++EG G +++VT + IG G +
Sbjct: 1 MYKRVRLKDTVEVPPRHLADVSPELVRRLLQDKLEGQMDEDIGSIVSVTNVHEIGDGAVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y + A+ F P EV+D V +V G F IGP+ + H S +D
Sbjct: 61 PNRPGVYYEADFDAVTFDPQMQEVVDGEVVEVVNFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S V+ D +R +IV VD
Sbjct: 120 YDGENQQLASRDSNRVLSVGDAVRARIVTKSVD 152
>gi|357166708|ref|XP_003580811.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Brachypodium distachyon]
Length = 200
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +EH + + P L + +K +L G ++V I ++ G I
Sbjct: 1 MFVLSQIEHNLPMPPHLLSRPLVDAIKTELERLFLDKVIANLGLCVSVYDILAVEGGFIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
PG+G Y V +R ++FRPF GEVL ++ ++ G+
Sbjct: 61 PGEGCSTYKVSFRLLMFRPFIGEVLVGKISGYDEKGL 97
>gi|145505393|ref|XP_001438663.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124405835|emb|CAK71266.1| unnamed protein product [Paramecium tetraurelia]
Length = 184
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 84/178 (47%), Gaps = 17/178 (9%)
Query: 1 MFYHIS-LEHEILLHPRYFGPQLYET--VKQKLYSEVEGTCTGKYGFVIAVTT------- 50
MFY + L+ ++ + P Y QL + + +++ ++EG G++I +T
Sbjct: 1 MFYQVKGLKTKLSIEPNYLD-QLKDQKFILEQIVQKLEGKYFDDVGYIICITKCMNYNQH 59
Query: 51 IDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISH 110
+D LI+ G V +K+ AIVF+ + E++D V++ +FA++GP+ I
Sbjct: 60 MDEQIDALIEED-GTVRVVIKFEAIVFKLQEKEIVDVEVSKCEAQAVFAKLGPIDFIIPR 118
Query: 111 HSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYL 168
+P + + S YK E VI++ ++R+++ T + A L D L
Sbjct: 119 DKLPANFTYSNES----YKE-EDEEVIKQGTKLRVQVQKTNYKQGKLRAFAHLTGDNL 171
>gi|189203789|ref|XP_001938230.1| DNA-directed rna polymerase III 25 kD polypeptide [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985329|gb|EDU50817.1| DNA-directed rna polymerase III 25 kD polypeptide [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 218
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 66/148 (44%), Gaps = 1/148 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +++ I + P F + +K + + G + + + S GLI
Sbjct: 1 MFILTTIQDLIQIKPEDFSRPSLQAIKDVVNEKYSNKIIPNIGLCLCMWDLLSATEGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLS-CFISHHSIPTDMQF 119
G G V +++R VFRPF+GE++ ++ N+ G+ ++ S FI + ++P + F
Sbjct: 61 HGTGLVNVNIEFRMTVFRPFRGEIIYGLIKSSNEEGIIIDLEFTSEVFIPYQNLPENSTF 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKI 147
N + S E+ + + + ++
Sbjct: 121 SKAENVWVWNSEGTELFFDKGEPVLFRV 148
>gi|154343111|ref|XP_001567501.1| putative RNA polymerase-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064833|emb|CAM42939.1| putative RNA polymerase-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 199
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 85/195 (43%), Gaps = 28/195 (14%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEG-----------------TCTGKYG 43
MFY I L+ + + P L ++ L VEG T +
Sbjct: 1 MFYKIVLQRTVNVKPADLCNTLNRSLLTFLREAVEGKPLPSPDSVASIALDFVTASKSSA 60
Query: 44 FVIAVTTIDSIGAGLIQP---GQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAE 100
VIAV +D + A +Q G V + + Y A+V + +GEVLD +V+ V++ G +A
Sbjct: 61 VVIAV--LDILNAETLQGKVLDDGSVTFRLTYEALVLKLHRGEVLDLLVSDVDETGFWAS 118
Query: 101 I-GPLSCFISHHSIPTD-----MQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDA 154
+ G F++ + + D +++ + + S I++D +R++++ +
Sbjct: 119 VYGVNKLFVNRNQMGEDVKTGALEWSFEAETAAWVSNDDRHSIKKDTMVRVRVIAETPQS 178
Query: 155 SGIFAIGTLMDDYLG 169
A+GT+ +LG
Sbjct: 179 ERGMAVGTIGAPFLG 193
>gi|308804628|ref|XP_003079626.1| KIAA1665 protein (ISS) [Ostreococcus tauri]
gi|116058082|emb|CAL53271.1| KIAA1665 protein (ISS) [Ostreococcus tauri]
Length = 213
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 74/157 (47%), Gaps = 9/157 (5%)
Query: 1 MFYHISL-EHEILLHPRYFGPQLYETVKQKLYS----EVEGTCTGKYGFVIAVTTIDSIG 55
MF ++L + + + P G E V Q+L S +V C G + + I +I
Sbjct: 9 MFQIVALSDSAVKIAPANLGKSTLEAVTQELESLYVDKVLAECGG---LCVTLYEITNIS 65
Query: 56 AGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIP 114
G + G+G V + V+++ ++F+PF GEVL+ + ++ G IG FI ++
Sbjct: 66 GGAVLSGEGCVCFEVEFKLVLFKPFTGEVLEGKLESSDEHGAHVSIGFFDDVFIPPSNMQ 125
Query: 115 TDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR 151
++ + + + ++ +++R ++VG+R
Sbjct: 126 DPSEWDEDEKAWIWDYNGERIKLEVGEKVRFRVVGSR 162
>gi|212225065|ref|YP_002308301.1| DNA-directed RNA polymerase subunit E' [Thermococcus onnurineus
NA1]
gi|212010022|gb|ACJ17404.1| DNA-directed RNA polymerase, subunit E' [Thermococcus onnurineus
NA1]
Length = 188
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 68/157 (43%), Gaps = 1/157 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + ++ + + PR F E K L EG G ++AV ++ I G++
Sbjct: 1 MYKLLKIKDVVRIPPRMFTMDPKEAAKIVLRETYEGIYDRDEGVILAVMDVEEISQGVVV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + V + +V++P EV++ V V G F IGP+ + + D
Sbjct: 61 PGDGATYHEVVFDVLVWKPEMHEVVEGEVIDVAPYGAFIRIGPMDGLVHISQLMDDYVVF 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGI 157
N + + +++ DE++ +I+ + + I
Sbjct: 121 DEKNK-QFLGKETKRILKLGDEVKARIIAISIKSRVI 156
>gi|390939143|ref|YP_006402881.1| DNA-directed RNA polymerase [Desulfurococcus fermentans DSM 16532]
gi|390192250|gb|AFL67306.1| DNA-directed RNA polymerase [Desulfurococcus fermentans DSM 16532]
Length = 190
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 9/155 (5%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTG--------KYGFVIAVTTID 52
M+ I ++ I + P FG + + ++L S+ EGT K G ++ + +
Sbjct: 1 MYSLIRVKDVIRIPPAKFGRPVKDVALEELRSKYEGTIASIESKGGEHKLGIIVTIIDVK 60
Query: 53 SIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHS 112
G I PG G + V+ A+VF PF EV++ V K G++ +G L FI +
Sbjct: 61 VDENGRILPGDGATYHDVEMSALVFSPFIKEVVEGEAVTVAKSGIYLNLGVLDGFIHINQ 120
Query: 113 IPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKI 147
+ + N+ V I++ D +R KI
Sbjct: 121 VSEEKVSYDNARSVIILE-ESHRTIEKGDILRAKI 154
>gi|330925060|ref|XP_003300899.1| hypothetical protein PTT_12262 [Pyrenophora teres f. teres 0-1]
gi|311324782|gb|EFQ91031.1| hypothetical protein PTT_12262 [Pyrenophora teres f. teres 0-1]
Length = 214
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 66/148 (44%), Gaps = 1/148 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +++ I + P F + +K + + G + + + S GLI
Sbjct: 1 MFILTTIQDLIQIKPEDFSKPSPQAIKDVVNEKYSNRIIPNIGLCLCMWDLLSATEGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLS-CFISHHSIPTDMQF 119
G G V +++R VFRPF+GE++ ++ N+ G+ ++ S FI + ++P + F
Sbjct: 61 HGTGLVNVNIEFRMTVFRPFRGEIIYGLIKSSNEEGIIIDLEFTSEVFIPYQNLPENSTF 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKI 147
N + S E+ + + + ++
Sbjct: 121 SKAENVWVWNSEGTELFFDKGEPVLFRV 148
>gi|383621109|ref|ZP_09947515.1| DNA-directed RNA polymerase subunit E' [Halobiforma lacisalsi AJ5]
gi|448693438|ref|ZP_21696807.1| DNA-directed RNA polymerase subunit E' [Halobiforma lacisalsi AJ5]
gi|445786297|gb|EMA37067.1| DNA-directed RNA polymerase subunit E' [Halobiforma lacisalsi AJ5]
Length = 191
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + P G + VK+ L ++EG + G V++VT + IG G +
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSPDLVKRLLQDKLEGRMDEEVGSVVSVTEVHDIGEGTVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y + A+ F P EV+D V +V + G F IGP+ + H S +D
Sbjct: 61 PNEPGVYYEADFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + DD +R +IV +D
Sbjct: 120 FDGENQQLASNESNRTLAVDDAVRARIVTKSID 152
>gi|415999|emb|CAA53164.1| DNA-directed RNA polymerase [Sulfolobus acidocaldarius]
Length = 248
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 2/170 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P YFG + E + L E + G V+ + + G I
Sbjct: 1 MFKLVRAKGIVRIPPEYFGQSVDEIAIKILRQEYQEKLIKDIGVVLGIVNAKASEEGFII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + V++ +V+ P EV++ V+QV+ G++ +GP+ + H S TD
Sbjct: 61 FGDGATYHEVEFDMLVYTPIIHEVIEGEVSQVDNYGVYVNMGPVDGLV-HISQITDDNLK 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIG-TLMDDYLG 169
+SN + I + D +R I+ + + + I T+ YLG
Sbjct: 120 FDSNRGILIGEKSKKSITKGDRVRAMIISASMSSGRLPRIALTMKQPYLG 169
>gi|448299589|ref|ZP_21489598.1| DNA-directed RNA polymerase subunit E' [Natronorubrum tibetense
GA33]
gi|445587564|gb|ELY41822.1| DNA-directed RNA polymerase subunit E' [Natronorubrum tibetense
GA33]
Length = 189
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ ++L + + P G VK+ L ++EG + G V++VT + IG G +
Sbjct: 1 MYKRVTLTDTVEVPPEELGDVSPNLVKRLLQDKLEGRMDEQVGSVVSVTNVHDIGEGTVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y ++ A+ F P EV+D V +V + G F IGP+ + H S +D
Sbjct: 61 PNRPGVYYEAEFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + DD +R +IV +D
Sbjct: 120 YDGENQQLASNESNRTLGVDDAVRARIVTKSID 152
>gi|66822507|ref|XP_644608.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|66822575|ref|XP_644642.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|122057759|sp|Q557J3.1|RPC8_DICDI RecName: Full=DNA-directed RNA polymerase III subunit rpc8;
Short=RNA polymerase III subunit C8; AltName:
Full=DNA-directed RNA polymerase III subunit H
gi|60472717|gb|EAL70667.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|60472766|gb|EAL70716.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
Length = 252
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 20/157 (12%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGK----YGFVIAVTTIDSIGA 56
MF+ I++E ++ + P F ++ Q + E+E T K G +A+ I G
Sbjct: 1 MFHLITIEDKVRIAPSQFNNEV-----QTIEDEIEKKYTSKVVLNAGLFVALYDILGTGD 55
Query: 57 GLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNK------VGMFAEIGPLSCFISH 110
+ G G V++R +VF+PFKGEVL+ V+ + ++ +G F EI +++
Sbjct: 56 SYVHSGDGGAHLMVRFRMVVFKPFKGEVLEGVIKKSSRQSIQISLGFFHEI-----YLNP 110
Query: 111 HSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKI 147
+P + ++ ++ ++ +R KI
Sbjct: 111 IELPNPSNYNQEEGLWYWEWNENQLFFEDGGRVRFKI 147
>gi|429192262|ref|YP_007177940.1| DNA-directed RNA polymerase subunit E' [Natronobacterium gregoryi
SP2]
gi|448325661|ref|ZP_21515046.1| DNA-directed RNA polymerase subunit E' [Natronobacterium gregoryi
SP2]
gi|429136480|gb|AFZ73491.1| DNA-directed RNA polymerase subunit E' [Natronobacterium gregoryi
SP2]
gi|445614676|gb|ELY68344.1| DNA-directed RNA polymerase subunit E' [Natronobacterium gregoryi
SP2]
Length = 191
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + P G + VK+ L ++EG + G V+++T + IG G +
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSPDLVKRLLQDKLEGQMDEEVGSVVSITNVHDIGEGTVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y + A+ F P EV+D V +V + G F IGP+ + H S +D
Sbjct: 61 PNEPGVYYEADFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + DD +R +IV +D
Sbjct: 120 FDGENQQLASNESSRTLTVDDAVRARIVTKSID 152
>gi|374724743|gb|EHR76823.1| DNA-directed RNA polymerase subunit E [uncultured marine group II
euryarchaeote]
Length = 183
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 1 MFYHISLEHEILLHPRYF--GPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGL 58
M+ +S E I + Y G L + + + + EG + F++ T + +G G
Sbjct: 1 MYKIVSREDTIRIPAEYMRKGASLNDHIDRLSMTAFEGRFDEENRFILLTTNHEPLGRGR 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDM 117
I G G + V++ A++F EV++ V++VN+ G F IGP+ + I DM
Sbjct: 61 IIHGDGAIYQRVRFDAVLFCMEDYEVVEGAVSEVNEFGAFVRIGPMEALLHKSQIMDDM 119
>gi|150400715|ref|YP_001324481.1| DNA-directed RNA polymerase subunit E' [Methanococcus aeolicus
Nankai-3]
gi|150013418|gb|ABR55869.1| DNA-directed RNA polymerase [Methanococcus aeolicus Nankai-3]
Length = 195
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 73/150 (48%), Gaps = 3/150 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ I++ I + P+ FG L +++ + L + EG +GF++++ I IG G +
Sbjct: 1 MYKLITISDTIRVPPKMFGAPLKDSIHKILMEKYEGLMDKDFGFIMSIGDIGEIGGGKVV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
G G +P + + + P E+++ + V + G+F +GPL I I D + +
Sbjct: 61 YGDGAAYHPAIFDLLCYEPELYEIIEGEIVDVVEFGLFVRLGPLDGLIHISQIMDDFVSY 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
P + K VI++ D++R +IV
Sbjct: 121 DPQRGAIIGKESGK--VIEKGDKVRARIVA 148
>gi|15790905|ref|NP_280729.1| DNA-directed RNA polymerase subunit E' [Halobacterium sp. NRC-1]
gi|169236650|ref|YP_001689850.1| DNA-directed RNA polymerase subunit E' [Halobacterium salinarum R1]
gi|10581476|gb|AAG20209.1| DNA-directed RNA polymerase subunit E' [Halobacterium sp. NRC-1]
gi|167727716|emb|CAP14504.1| DNA-directed RNA polymerase subunit E [Halobacterium salinarum R1]
Length = 190
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ L+ I + P Y G + VK+ L ++EG G ++ VT + +G G +
Sbjct: 1 MYKRARLKDTIEVPPEYLGAVGPDLVKRLLQDKLEGRMDEDVGSIVTVTEVHDLGEGAVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y ++ A+ F P EV+D V +V G F IGP+ + H S +D
Sbjct: 61 PNRPGVYYEAEFDAVTFEPEMQEVVDGEVVEVVSFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S V+ D +R +IV +D
Sbjct: 120 FDEENQQLASRESNQVLGTGDSVRARIVTKSID 152
>gi|350296038|gb|EGZ77015.1| putative DNA-directed RNA polymerase III subunit 22.9 kDa
[Neurospora tetrasperma FGSC 2509]
Length = 193
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/150 (20%), Positives = 65/150 (43%), Gaps = 1/150 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F + + ++ + ++ K G + + + G I
Sbjct: 1 MFITTKIADLVQIAPEDFSKESFVAIEDNINTKYANKVVQKVGLFVCLWDVTWTSEGQIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLS-CFISHHSIPTDMQF 119
G G V V++ +VFRPFK EV+ A +T + G++ + + F+ +P + +F
Sbjct: 61 HGSGLVNVNVEFEMVVFRPFKHEVILARITHQTEEGIYLGMDFFNDIFVPAAELPDNSEF 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
+K E+ ++ +R +++G
Sbjct: 121 DTTEKVWVWKEEGQELYFDNNEMVRFRVIG 150
>gi|385302410|gb|EIF46542.1| rna polymerase iii subunit required for transcription initiation
[Dekkera bruxellensis AWRI1499]
Length = 189
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 25 TVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEV 84
+KQ+L + K G VIAV + + G+++PG G + V +R +VF+PF GEV
Sbjct: 9 AIKQELNGKYANKVIPKLGLVIAVWDVLKVDDGMLKPGDGSIYIKVVFRCVVFKPFVGEV 68
Query: 85 LDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIR 144
L + ++ G+ + F + IP + F NS Y V Q D+E +
Sbjct: 69 LTGWIESCSEEGIKVNME----FFNDIFIPKSLLF-ENS---LYSPKDNAWVWQMDEENK 120
Query: 145 LKI-VGTRVD 153
L + V R++
Sbjct: 121 LYLDVNERIN 130
>gi|390596833|gb|EIN06234.1| hypothetical protein PUNSTDRAFT_106452 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 226
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 1/125 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ + +HP FG + + + +L + G + V I G G ++
Sbjct: 1 MFQLSFIKDTVAIHPSSFGTPVEQALIAELNKKYANRVLHDVGLCVCVFDISEAGEGKVR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQF 119
G G + Y V +R +VFRPF EV+ A V ++ G+ +G +I +P F
Sbjct: 61 YGDGMLWYKVVFRLVVFRPFASEVILAKVKSSDEDGIRVSVGFFDDIYIPVMYLPQPSAF 120
Query: 120 CPNSN 124
PN
Sbjct: 121 DPNER 125
>gi|336273894|ref|XP_003351701.1| hypothetical protein SMAC_00243 [Sordaria macrospora k-hell]
gi|380095980|emb|CCC06027.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 193
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 65/150 (43%), Gaps = 1/150 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F + + ++ + ++ K G I + + G I
Sbjct: 1 MFITTKIADLVQIAPEDFSKESFVAIEDNINAKYANKVVQKVGLFICLWDVTWTSEGQIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLS-CFISHHSIPTDMQF 119
G G V V++ +VFRPFK EV+ A +T + G++ + + F+ +P + +F
Sbjct: 61 HGTGLVNVNVEFEMVVFRPFKHEVMLARITHQTEEGIYLGMDFFNDIFVPAAELPDNSEF 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
+K E+ ++ +R +++G
Sbjct: 121 DTTEKVWVWKEEGQELYYDNNEMVRFRVIG 150
>gi|213406069|ref|XP_002173806.1| RNA polymerase III subunit Rpc25 [Schizosaccharomyces japonicus
yFS275]
gi|212001853|gb|EEB07513.1| RNA polymerase III subunit Rpc25 [Schizosaccharomyces japonicus
yFS275]
Length = 205
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + +HP F E + ++ + + G IA+ +IG G+I+
Sbjct: 1 MFVLSVISDVVKIHPSDFWKPTKEALSDEINKKYANKVIQQVGLAIAIFDFLTIGEGIIK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDM 117
G G VK+R +VFRPF+GEV+ + ++G+ +G F +P +M
Sbjct: 61 FGDGCSYMNVKFRLLVFRPFRGEVMLGRIKSCTELGIRVTLG----FFDDIFVPKEM 113
>gi|392564956|gb|EIW58133.1| polymerase III polypeptide H [Trametes versicolor FP-101664 SS1]
Length = 220
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ + +HP FG + V +L + G I V + +G G ++
Sbjct: 1 MFQLSIIKDTVAIHPSQFGLPPQQAVTNELNKKYANRVLHDVGLCICVFDLSEVGEGKVR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
G G + Y V +R +VFRPF EVL A V ++ G+ +G
Sbjct: 61 YGDGCLWYKVVFRLVVFRPFASEVLLARVKSSDEDGIRLTVG 102
>gi|448304425|ref|ZP_21494363.1| DNA-directed RNA polymerase subunit E' [Natronorubrum
sulfidifaciens JCM 14089]
gi|445590858|gb|ELY45070.1| DNA-directed RNA polymerase subunit E' [Natronorubrum
sulfidifaciens JCM 14089]
Length = 189
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + P G + VK+ L ++EG G V++VT + IG G +
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSPDLVKRLLQDKLEGRMDEDVGSVVSVTDVHDIGEGTVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y + A+ F P EV+D V +V + G F IGP+ + H S +D
Sbjct: 61 PNRPGVYYEADFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + DD +R +IV +D
Sbjct: 120 FDGENQQLASSESNQTLGVDDAVRARIVTKSID 152
>gi|218884656|ref|YP_002429038.1| DNA-directed RNA polymerase subunit E' [Desulfurococcus
kamchatkensis 1221n]
gi|218766272|gb|ACL11671.1| DNA-directed RNA polymerase subunit E' [Desulfurococcus
kamchatkensis 1221n]
Length = 190
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTG--------KYGFVIAVTTID 52
M+ I + I + P FG + + ++L S+ EGT K G ++ + +
Sbjct: 1 MYSLIRVNDVIRIPPAKFGRPVKDVALEELRSKYEGTIASIESKGGEHKLGIIVTIIDVK 60
Query: 53 SIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHS 112
G I PG G + V+ A+VF PF EV++ V K G++ +G L FI +
Sbjct: 61 VDENGRILPGDGATYHDVEMSALVFSPFIKEVVEGEAVTVAKSGIYLNLGVLDGFIHINQ 120
Query: 113 IPTD-MQFCPNSNPVCYKSVHGEVVIQEDDEIRLKI 147
+ + + + + + + H I++ D +R KI
Sbjct: 121 VSEEKVSYDNTRSAIMLEESH--RTIEKGDILRAKI 154
>gi|327310158|ref|YP_004337055.1| DNA-directed RNA polymerase subunit E' [Thermoproteus uzoniensis
768-20]
gi|326946637|gb|AEA11743.1| DNA-directed RNA polymerase subunit E' [Thermoproteus uzoniensis
768-20]
Length = 189
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%)
Query: 2 FYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQP 61
F I E + ++P FG L + +L + EG GFV+AV G+I
Sbjct: 3 FRLIEAEDYVRINPSEFGKPLEDVALAQLRARYEGKSFRDLGFVVAVLGAKVAREGVILF 62
Query: 62 GQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCP 121
G G + + + + P GEV+ +V +VG+ IGP+ FI+ + +
Sbjct: 63 GDGATYHRAVFDLLTYVPLDGEVVYGIVESAREVGVMVRIGPVLGFINKIHLMEEPNILF 122
Query: 122 NSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
+++ + + + D +R +I G
Sbjct: 123 DASTKSFIGERSKRKVGVGDMVRARITG 150
>gi|126274174|ref|XP_001387865.1| subunit of RNA polymerase III [Scheffersomyces stipitis CBS 6054]
gi|126213735|gb|EAZ63842.1| subunit of RNA polymerase III [Scheffersomyces stipitis CBS 6054]
Length = 196
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 12/154 (7%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L + + P F + ++ +L ++ G V+ + + I GL++
Sbjct: 1 MFILSELTDLVRIPPHTFNIPIQHSLTDELNKKLSNKIISNLGLVVTIWDLLDINDGLLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM------FAEIGPLSCFISHHSIP 114
PG G V++R IV++PF GE++ V+ + G+ F EI FI I
Sbjct: 61 PGDGGSYVEVRFRCIVWKPFIGEIITGWVSDCSAEGIKVRLDFFDEI-----FIPKRYIF 115
Query: 115 TDMQFCPNSNPVCYK-SVHGEVVIQEDDEIRLKI 147
+ +F P +K E I +++IR ++
Sbjct: 116 ENCEFKPVEKAWVWKPDEDSEFFIDINEKIRFRV 149
>gi|448329047|ref|ZP_21518349.1| DNA-directed RNA polymerase subunit E' [Natrinema versiforme JCM
10478]
gi|445614507|gb|ELY68181.1| DNA-directed RNA polymerase subunit E' [Natrinema versiforme JCM
10478]
Length = 189
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + P G + VK+ L ++EG + G V++VT + IG G +
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSPDRVKRLLQDKLEGRMDEEVGSVVSVTDVHDIGEGTVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y ++ A+ F P EV+D V +V + G F IGP+ + H S +D
Sbjct: 61 PNRPGVYYEAEFDAVTFDPEMQEVVDGTVVEVVEFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + DD +R +IV +D
Sbjct: 120 FDGENQRLASNESARSLGVDDAVRTRIVTKSID 152
>gi|408382504|ref|ZP_11180048.1| DNA-directed RNA polymerase subunit E' [Methanobacterium formicicum
DSM 3637]
gi|407814859|gb|EKF85482.1| DNA-directed RNA polymerase subunit E' [Methanobacterium formicicum
DSM 3637]
Length = 194
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 1/149 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ +E + + P F L E + + G K G ++ V I+ IG G +
Sbjct: 1 MYLISKIEDTVRIPPSRFEEPLNEVAIEIINESYVGKIDKKMGLMVTVKDIEEIGVGKVI 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + V + A+ F+P E+++ V +V + G F IGP+ + H S TD
Sbjct: 61 MGDGAAYHEVVFNALFFKPELHEIVEGEVIEVTEFGAFIRIGPMDGLV-HVSQVTDDYIN 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
+ + ++E +++R +IV
Sbjct: 120 YDGKRGALIGKESKKSLEEGNKVRARIVA 148
>gi|448349273|ref|ZP_21538115.1| DNA-directed RNA polymerase subunit E' [Natrialba taiwanensis DSM
12281]
gi|448361201|ref|ZP_21549823.1| DNA-directed RNA polymerase subunit E' [Natrialba asiatica DSM
12278]
gi|448368350|ref|ZP_21555302.1| DNA-directed RNA polymerase subunit E' [Natrialba aegyptia DSM
13077]
gi|445640516|gb|ELY93603.1| DNA-directed RNA polymerase subunit E' [Natrialba taiwanensis DSM
12281]
gi|445651791|gb|ELZ04698.1| DNA-directed RNA polymerase subunit E' [Natrialba asiatica DSM
12278]
gi|445652180|gb|ELZ05080.1| DNA-directed RNA polymerase subunit E' [Natrialba aegyptia DSM
13077]
Length = 189
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + P G VK+ L ++EG + G +++VT + IG G +
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSPTLVKRLLQDKLEGRMDEEVGSIVSVTEVRDIGEGTVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y + A+ F P EV+D V +V + G F IGP+ + H S +D
Sbjct: 61 PNRPGVYYEADFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
++ S + DD IR +IV +D
Sbjct: 120 FDAENQQLASNESNRTLGVDDAIRARIVTKSID 152
>gi|448308111|ref|ZP_21497992.1| DNA-directed RNA polymerase subunit E' [Natronorubrum bangense JCM
10635]
gi|445594523|gb|ELY48677.1| DNA-directed RNA polymerase subunit E' [Natronorubrum bangense JCM
10635]
Length = 189
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + P G + VK+ L ++EG + G V++VT + IG G +
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSPDLVKRLLQDKLEGRMDEEVGSVVSVTEVHDIGEGTVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P Q V Y + A+ F P EV+D V +V + G F IGP+ + H S +D
Sbjct: 61 PNQPGVYYEADFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + +D +R +IV +D
Sbjct: 120 FDGENQQLASSESNQTLGVEDAVRARIVTKSID 152
>gi|448720127|ref|ZP_21703184.1| DNA-directed RNA polymerase subunit E' [Halobiforma nitratireducens
JCM 10879]
gi|445782495|gb|EMA33337.1| DNA-directed RNA polymerase subunit E' [Halobiforma nitratireducens
JCM 10879]
Length = 191
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + P G + VK+ L ++EG + G V+++T + IG G +
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSPDLVKRLLQDKLEGRMDEEVGSVVSITEVHDIGEGTVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y + A+ F P EV+D V +V + G F IGP+ + H S +D
Sbjct: 61 PNEPGVYYEADFDAVTFDPQMQEVVDGTVVEVVEFGAFIGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + DD +R +IV +D
Sbjct: 120 FDGENQQLASNESNRTLAVDDAVRARIVTKSID 152
>gi|345005890|ref|YP_004808743.1| DNA-directed RNA polymerase [halophilic archaeon DL31]
gi|344321516|gb|AEN06370.1| DNA-directed RNA polymerase [halophilic archaeon DL31]
Length = 193
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + PR E V+ L ++EG G V++V I IG G +
Sbjct: 1 MYKRVRLKDTVEVPPRNLADVTEERVQALLQDKLEGRMDEDVGSVVSVVKIHDIGDGAVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y + AI + P EV+D V +V + G F IGP+ + H S +D
Sbjct: 61 PNRPGVYYEADFDAITYDPDMQEVVDGTVVEVVEFGAFVGIGPIDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + DD +R++IV +D
Sbjct: 120 YDGENQQLSSSESSDTLGVDDAVRVRIVTKSID 152
>gi|320580456|gb|EFW94678.1| RNA polymerase III subunit C25 [Ogataea parapolymorpha DL-1]
Length = 206
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 8/145 (5%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + I + P F E V+ +L + K G V+AV + + GL++
Sbjct: 1 MFQLSVISDLIRISPHLFHLPTEEAVQNELNIKYANKVIHKLGLVVAVWDLLQVDDGLLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G V V++R +VF+P GEVL + + G+ + F + IP + F
Sbjct: 61 PGDGAVFINVRFRIVVFKPVVGEVLTGWIESCSDEGIKVNMN----FFNDIFIPKNYMF- 115
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRL 145
Y + + Q D+E +L
Sbjct: 116 ---EGSYYSADDNAWIWQMDEETKL 137
>gi|115491011|ref|XP_001210133.1| hypothetical protein ATEG_00047 [Aspergillus terreus NIH2624]
gi|114196993|gb|EAU38693.1| hypothetical protein ATEG_00047 [Aspergillus terreus NIH2624]
Length = 206
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +L I + P F ++ + + K G I + GLI
Sbjct: 1 MFILTTLSDLIQIAPEDFSKYSSVAIEDNINEKYANKVIQKIGLCIGFYDLLESSDGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQF 119
G G V VK+R IVFRPFKGE++ ++ + G+ + P + ++ SIP ++F
Sbjct: 61 HGTGLVNVNVKFRLIVFRPFKGEIMLGKISSATEHGIKSMSLPAATTVTPLSIPVGVEF 119
>gi|448399137|ref|ZP_21570452.1| DNA-directed RNA polymerase subunit E' [Haloterrigena limicola JCM
13563]
gi|445669482|gb|ELZ22092.1| DNA-directed RNA polymerase subunit E' [Haloterrigena limicola JCM
13563]
Length = 189
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + P G VK+ L ++EG + G V++VT + IG G +
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSPGLVKRLLQDKLEGRMDEEVGSVVSVTEVHDIGEGAVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y ++ A+ F P EV+D V +V + G F IGP+ + H S +D
Sbjct: 61 PNRPGVYYEAEFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + + DD +R +IV +D
Sbjct: 120 FDGENQQLSSNESDRTLGVDDAVRTRIVTKSID 152
>gi|300710150|ref|YP_003735964.1| DNA-directed RNA polymerase subunit E' [Halalkalicoccus jeotgali
B3]
gi|448297078|ref|ZP_21487126.1| DNA-directed RNA polymerase subunit E' [Halalkalicoccus jeotgali
B3]
gi|299123833|gb|ADJ14172.1| DNA-directed RNA polymerase subunit E' [Halalkalicoccus jeotgali
B3]
gi|445580260|gb|ELY34646.1| DNA-directed RNA polymerase subunit E' [Halalkalicoccus jeotgali
B3]
Length = 194
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 5/157 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ ++L + + R G + +++ L ++EG + G V+ VT + +G G++
Sbjct: 1 MYKRVTLTDTVEVPARELGSVTTDQIQRLLQDKLEGRMDSEVGSVVTVTEVRDVGEGVVL 60
Query: 61 PG----QGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
P +G V Y ++ A+ F P EV+D V +V + G F IGP+ + H S +D
Sbjct: 61 PERERHEGSVFYEAEFDAVTFDPRMQEVVDGTVVEVVEFGAFVGIGPVDGLL-HVSQISD 119
Query: 117 MQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
++ S + DD +R +IV +D
Sbjct: 120 EYLSYDAENQQLASTESNRTLGVDDAVRARIVTKSID 156
>gi|448436590|ref|ZP_21587170.1| DNA-directed RNA polymerase subunit E' [Halorubrum tebenquichense
DSM 14210]
gi|448503642|ref|ZP_21613271.1| DNA-directed RNA polymerase subunit E' [Halorubrum coriense DSM
10284]
gi|448535645|ref|ZP_21622165.1| DNA-directed RNA polymerase subunit E' [Halorubrum hochstenium ATCC
700873]
gi|445682371|gb|ELZ34789.1| DNA-directed RNA polymerase subunit E' [Halorubrum tebenquichense
DSM 14210]
gi|445691843|gb|ELZ44026.1| DNA-directed RNA polymerase subunit E' [Halorubrum coriense DSM
10284]
gi|445703146|gb|ELZ55081.1| DNA-directed RNA polymerase subunit E' [Halorubrum hochstenium ATCC
700873]
Length = 191
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + P++ E VK L ++EG G V++V + IG G +
Sbjct: 1 MYKRVRLKDTVEVPPKHLADVTDERVKALLQDKLEGRMDEDVGSVVSVIEVHDIGEGAVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
+ V Y ++ A+ + P EV D V + + G F IGP+ + H S TD
Sbjct: 61 HNRPGVYYEAEFDALTYDPDMQEVADGTVVETVEFGAFVGIGPVDGLL-HVSQITD 115
>gi|448441290|ref|ZP_21589041.1| DNA-directed RNA polymerase subunit E' [Halorubrum saccharovorum
DSM 1137]
gi|445689173|gb|ELZ41414.1| DNA-directed RNA polymerase subunit E' [Halorubrum saccharovorum
DSM 1137]
Length = 191
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + P++ E VK L ++EG G V++V + IG G +
Sbjct: 1 MYKRVRLKDTVEVPPKHLADVTDERVKALLQDKLEGRMDEDVGSVVSVIEVHDIGDGAVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
+ V Y ++ A+ + P EV D V + + G F IGP+ + H S TD
Sbjct: 61 HNRPGVYYEAEFDALTYDPDMQEVADGTVVETVEFGAFVGIGPVDGLL-HVSQITD 115
>gi|448414921|ref|ZP_21577870.1| DNA-directed RNA polymerase subunit E' [Halosarcina pallida JCM
14848]
gi|445681618|gb|ELZ34048.1| DNA-directed RNA polymerase subunit E' [Halosarcina pallida JCM
14848]
Length = 192
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + P + V++ L ++EG + G V++V + IG G +
Sbjct: 1 MYKRVRLKDTVEVPPEHLADVTPLRVRRLLQDKLEGRMDEEVGSVVSVVDVHDIGEGTVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+ V Y ++ A+ F P EV+D V +V + G F IGP+ + H S +D
Sbjct: 61 PGRAGVYYEAEFDALTFDPDMQEVIDGQVVEVVEFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + D +R+++V +D
Sbjct: 120 YDGENQQLASTESNRTLGVGDSVRVRVVTKSID 152
>gi|84489433|ref|YP_447665.1| DNA-directed RNA polymerase subunit E' [Methanosphaera stadtmanae
DSM 3091]
gi|84372752|gb|ABC57022.1| RpoE1 [Methanosphaera stadtmanae DSM 3091]
Length = 185
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 3/150 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ ++E + + P F E L + G K G ++ VT + G +
Sbjct: 1 MYEIATIEDTVRVPPNMFDMPFEEVTATILNKQYVGKLDKKLGILVMVTEVIDHSEGKVV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
G G Y VK+ A+ ++P EV+D V ++ + G F IGP+ + I D + +
Sbjct: 61 IGDGAAFYHVKFNALFYKPMLHEVIDGEVIEIIEFGAFVRIGPMDGLVHVSQITNDYINY 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
+ K + + E D +R +IV
Sbjct: 121 DVKRGALLAKESNKS--LDETDFVRARIVA 148
>gi|448426344|ref|ZP_21583290.1| DNA-directed RNA polymerase subunit E' [Halorubrum terrestre JCM
10247]
gi|448452225|ref|ZP_21593208.1| DNA-directed RNA polymerase subunit E' [Halorubrum litoreum JCM
13561]
gi|448484472|ref|ZP_21606105.1| DNA-directed RNA polymerase subunit E' [Halorubrum arcis JCM 13916]
gi|448508407|ref|ZP_21615513.1| DNA-directed RNA polymerase subunit E' [Halorubrum distributum JCM
9100]
gi|448518030|ref|ZP_21617329.1| DNA-directed RNA polymerase subunit E' [Halorubrum distributum JCM
10118]
gi|445679835|gb|ELZ32295.1| DNA-directed RNA polymerase subunit E' [Halorubrum terrestre JCM
10247]
gi|445697473|gb|ELZ49537.1| DNA-directed RNA polymerase subunit E' [Halorubrum distributum JCM
9100]
gi|445705566|gb|ELZ57460.1| DNA-directed RNA polymerase subunit E' [Halorubrum distributum JCM
10118]
gi|445809492|gb|EMA59533.1| DNA-directed RNA polymerase subunit E' [Halorubrum litoreum JCM
13561]
gi|445819974|gb|EMA69806.1| DNA-directed RNA polymerase subunit E' [Halorubrum arcis JCM 13916]
Length = 191
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + P++ E VK L ++EG G V++V + IG G +
Sbjct: 1 MYKRVRLKDTVEVPPKHLADVTDERVKALLQDKLEGRMDEDVGSVVSVIEVHDIGEGAVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
+ V Y ++ A+ + P EV D V + + G F IGP+ + H S TD
Sbjct: 61 HNRPGVYYEAEFDALTYDPDMQEVADGTVVETVEFGAFVGIGPVDGLL-HVSQITD 115
>gi|448390028|ref|ZP_21565886.1| DNA-directed RNA polymerase subunit E' [Haloterrigena salina JCM
13891]
gi|445667848|gb|ELZ20486.1| DNA-directed RNA polymerase subunit E' [Haloterrigena salina JCM
13891]
Length = 191
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + P G + VK+ L ++EG + G V++VT + IG G +
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSPDLVKRLLQDKLEGRMDEEVGSVVSVTEVHDIGEGTVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y ++ A+ F P EV+D V +V + G F IGP+ + H S +D
Sbjct: 61 PNRPGVYYEAEFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + + +D +R +IV +D
Sbjct: 120 FDGENQRLSSNESDRALGVEDAVRARIVTKSID 152
>gi|448489632|ref|ZP_21607728.1| DNA-directed RNA polymerase subunit E' [Halorubrum californiensis
DSM 19288]
gi|445694598|gb|ELZ46722.1| DNA-directed RNA polymerase subunit E' [Halorubrum californiensis
DSM 19288]
Length = 191
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + P++ E VK L ++EG G V++V + IG G +
Sbjct: 1 MYKRVRLKDTVEVPPKHLADVTDERVKALLQDKLEGRMDEDVGSVVSVIEVHDIGEGAVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
+ V Y ++ A+ + P EV D V + + G F IGP+ + H S TD
Sbjct: 61 HNRPGVYYEAEFDALTYDPEMQEVADGTVVETVEFGAFVGIGPVDGLL-HVSQITD 115
>gi|222480804|ref|YP_002567041.1| DNA-directed RNA polymerase subunit E' [Halorubrum lacusprofundi
ATCC 49239]
gi|222453706|gb|ACM57971.1| DNA-directed RNA polymerase [Halorubrum lacusprofundi ATCC 49239]
Length = 191
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + P++ E VK L ++EG G V++V + IG G +
Sbjct: 1 MYKRVRLKDTVEVPPKHLADVTDERVKALLQDKLEGRMDEDVGSVVSVIEVHDIGDGAVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
+ V Y ++ A+ + P EV D V + + G F IGP+ + H S TD
Sbjct: 61 HNRPGVYYEAEFDALTYDPDMQEVADGTVVETVEFGAFVGIGPVDGLL-HVSQITD 115
>gi|443730027|gb|ELU15722.1| hypothetical protein CAPTEDRAFT_156703 [Capitella teleta]
Length = 208
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 4/122 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + ++ + + P F +L + V++ L ++ G I++ I I I
Sbjct: 1 MFTLVEMKDTVRVPPWRFKTKLNQAVEEALNMKLANKVVHNVGLCISLWDITEIADSYIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G VK+R +VFRPF E+L + +K G+ +G F IP+D
Sbjct: 61 PGDGSSHTIVKFRYVVFRPFMDEILVGKIRSSSKEGVHVSLG----FFDDILIPSDAMQH 116
Query: 121 PN 122
P+
Sbjct: 117 PS 118
>gi|448460022|ref|ZP_21596942.1| DNA-directed RNA polymerase subunit E' [Halorubrum lipolyticum DSM
21995]
gi|448463284|ref|ZP_21598062.1| DNA-directed RNA polymerase subunit E' [Halorubrum kocurii JCM
14978]
gi|445807740|gb|EMA57821.1| DNA-directed RNA polymerase subunit E' [Halorubrum lipolyticum DSM
21995]
gi|445817279|gb|EMA67155.1| DNA-directed RNA polymerase subunit E' [Halorubrum kocurii JCM
14978]
Length = 191
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + P++ E VK L ++EG G V++V + IG G +
Sbjct: 1 MYKRVRLKDTVEVPPKHLADVTDERVKALLQDKLEGRMDEDVGSVVSVIEVHDIGDGAVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
+ V Y ++ A+ + P EV D V + + G F IGP+ + H S TD
Sbjct: 61 HNRPGVYYEAEFDALTYDPDMQEVADGTVVETVEFGAFVGIGPVDGLL-HVSQITD 115
>gi|410720722|ref|ZP_11360075.1| DNA-directed RNA polymerase subunit E' [Methanobacterium sp.
Maddingley MBC34]
gi|410600433|gb|EKQ54961.1| DNA-directed RNA polymerase subunit E' [Methanobacterium sp.
Maddingley MBC34]
Length = 194
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 1/148 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ +E + + P F L + + L G K G ++ V I+ IG G +
Sbjct: 1 MYLISKIEDTVRIPPSRFEEPLNDVAIEILNEGYVGKIDKKMGLMVTVKDIEEIGVGKVI 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + V + A+ F+P E+++ V +V + G F IGP+ + H S TD
Sbjct: 61 MGDGAAYHEVVFTALFFKPELHEIVEGEVIEVTEFGAFIRIGPMDGLV-HVSQVTDDYIN 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIV 148
+ + ++E +++R +IV
Sbjct: 120 YDGKRGALIGKESKKALEEGNKVRARIV 147
>gi|340992695|gb|EGS23250.1| DNA-directed RNA polymerase III subunit-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 191
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 17/155 (10%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F Q Y ++ + ++ K G I + I GLI
Sbjct: 1 MFILTKIADLVQIAPEDFRKQSYAALEDNINAKYANKVLQKIGLCICLWDILWTSEGLI- 59
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM------FAEIGPLSCFISHHSIP 114
GQG V++R +VFRPFKGEV+ A ++ + G+ F +I F+ +P
Sbjct: 60 -GQG----DVEFRMVVFRPFKGEVIVARISDQSPEGIHLVTDFFDDI-----FVPWTELP 109
Query: 115 TDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
+F P N +K + ++ +R +++
Sbjct: 110 EGSEFEPTENLWVWKEDDQVMYFDNNEMVRFRVIA 144
>gi|159041701|ref|YP_001540953.1| DNA-directed RNA polymerase subunit E' [Caldivirga maquilingensis
IC-167]
gi|157920536|gb|ABW01963.1| DNA-directed RNA polymerase [Caldivirga maquilingensis IC-167]
Length = 211
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 53/113 (46%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
+F I++E I + P F + + ++L S EG + G IAV + G+I
Sbjct: 17 VFRVITVEDYIRVPPSVFNEPIDKIAYEQLRSNYEGKVDRELGVFIAVFDVKVDKRGVIV 76
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSI 113
G G + V ++A+VF P E+++ V V + G IG L+ FI +
Sbjct: 77 YGDGATYHKVSFKALVFVPLINEIVEGDVVDVKEYGAHVRIGALTAFIHRSQV 129
>gi|170043715|ref|XP_001849521.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Culex
quinquefasciatus]
gi|167867047|gb|EDS30430.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Culex
quinquefasciatus]
Length = 239
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L+ + + P F +L E +K ++ ++ G IA+ I +G +I
Sbjct: 1 MFVLAELKDTVRIAPELFNLKLPEAIKDEVNRKLANKVLLNVGLCIALKDIVKLGDSIIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R IVFRP G+V+ + ++ G+ +G
Sbjct: 61 PGDGASHTEVNFRYIVFRPMIGDVITGKIRSCSREGVHVTLG 102
>gi|156376407|ref|XP_001630352.1| predicted protein [Nematostella vectensis]
gi|156217371|gb|EDO38289.1| predicted protein [Nematostella vectensis]
Length = 205
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ + + P F + E + KL ++ G I + I SIG +
Sbjct: 1 MFVLAEIKDTVQIKPWLFSLDIQEAISNKLNMKLANKVVHNVGLCIVLHDILSIGDSYLV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
PG G PV +R +VFRPF E+L + N G+
Sbjct: 61 PGDGSSHTPVTFRFVVFRPFVDEILKGRIRSCNHEGV 97
>gi|257076915|ref|ZP_05571276.1| DNA-directed RNA polymerase subunit E' [Ferroplasma acidarmanus
fer1]
Length = 191
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 25 TVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEV 84
T++ KL EG ++++V +I+ G G I G G V +KY A+ + P EV
Sbjct: 33 TLEGKLVDIQEGQKNIGKSYIVSVNSIEMKGEGTIVHGDGGVYQSIKYSALAYFPKMHEV 92
Query: 85 LDAVVTQVNKVGMFAEIGPLSCF-----ISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQE 139
+D +V V K G F + GP I +I DM+ N V S ++ ++
Sbjct: 93 VDGIVVAVQKFGAFIKFGPFEGLLHISQIMDDAINIDME---NQRIVGKDS---KMELKV 146
Query: 140 DDEIRLKIVGTRVDASGI 157
D+IR++IV + ++ +
Sbjct: 147 GDKIRVRIVALNLSSASL 164
>gi|48477938|ref|YP_023644.1| DNA-directed RNA polymerase subunit E' [Picrophilus torridus DSM
9790]
gi|48430586|gb|AAT43451.1| DNA-directed RNA polymerase subunit E' [Picrophilus torridus DSM
9790]
Length = 195
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 14/166 (8%)
Query: 4 HISLEHEILLH--PRYFGPQLYETV----KQKLY------SEVEGTCTGKYGFVIAVTTI 51
+ISLE++ + P G E V K+ L ++ G GK F++++ I
Sbjct: 2 YISLENDYVARVPPELLGDDYREAVLEITKRNLVGKLVDINDSTGRNMGKC-FIVSIENI 60
Query: 52 DSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHH 111
+ +G G I G G V V Y AI + P EV+D VV + K G F + GP +
Sbjct: 61 ELVGDGTIVHGDGGVYQDVVYTAIAYYPKMHEVVDGVVISIQKFGAFVKFGPFEGLLHIS 120
Query: 112 SIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGI 157
I D+ +N + + ++ D+IR++IV + +S I
Sbjct: 121 QIMDDIINIDMANQ-RFVGRDTKEDLKIGDKIRVRIVAMNLSSSSI 165
>gi|167042994|gb|ABZ07707.1| putative RNA polymerase Rpb7, N-terminal domain protein [uncultured
marine microorganism HF4000_ANIW137P11]
Length = 182
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Query: 1 MFYHISLEHEILLHPRYF--GPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGL 58
M+ ++LE I + Y G +L + + + ++ EG + + +++G G
Sbjct: 1 MYSLVTLEDTIRIPAEYIRRGRKLEDHIDELAHAAFEGRFDEDENYTLLTFNHETVGRGK 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSI 113
I G G + V+++A+ FR EV+D V+++++ G F IGP+ + I
Sbjct: 61 IIHGDGAIYQRVRFKALHFRMEANEVVDGAVSEISEYGAFIRIGPIEALLHKSQI 115
>gi|448475243|ref|ZP_21602961.1| DNA-directed RNA polymerase subunit E' [Halorubrum aidingense JCM
13560]
gi|445816714|gb|EMA66601.1| DNA-directed RNA polymerase subunit E' [Halorubrum aidingense JCM
13560]
Length = 191
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + P++ E VK L ++EG G V++V + +G G +
Sbjct: 1 MYKRVRLKDTVEVPPKHLADVTDERVKALLQDKLEGRMDEDVGSVVSVIEVHDVGEGAVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
+ V Y ++ A+ + P EV D V + + G F IGP+ + H S TD
Sbjct: 61 HNRPGVYYEAEFDALTYDPDMQEVADGTVVETVEFGAFVGIGPVDGLL-HVSQITD 115
>gi|146304987|ref|YP_001192303.1| DNA-directed RNA polymerase subunit E' [Metallosphaera sedula DSM
5348]
gi|145703237|gb|ABP96379.1| DNA-directed RNA polymerase, subunit E' [Metallosphaera sedula DSM
5348]
Length = 176
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P FG L +T + L +E + G V++V D G+I
Sbjct: 1 MFKVVKARGVVRIPPELFGEPLNKTAIEILNNEYKERLFKDLGLVLSVIRADVNEEGMII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
G G + V++ + F P EV++ +TQV+ G++ +GP+ + I D
Sbjct: 61 FGDGATYHEVEFELLTFSPMIQEVIEGDITQVDNYGIYVNMGPMDGLVHVSQIGDD 116
>gi|312382991|gb|EFR28239.1| hypothetical protein AND_04066 [Anopheles darlingi]
Length = 249
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L+ + + P F +L E +K+++ ++ G IA+ I +G +I
Sbjct: 1 MFVLAELKDNVRIAPELFRLKLPEAIKEQINRKLANKVLLNVGLCIALKDIVKLGHSIIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R IVFRP G+V+ + ++ G+ +G
Sbjct: 61 PGDGASHTEVHFRYIVFRPMVGDVITGKIRSCSREGVHITLG 102
>gi|322368285|ref|ZP_08042854.1| DNA-directed RNA polymerase subunit E' [Haladaptatus
paucihalophilus DX253]
gi|320552301|gb|EFW93946.1| DNA-directed RNA polymerase subunit E' [Haladaptatus
paucihalophilus DX253]
Length = 190
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ L+ + + P++ E VK+ L ++EG G V++VT + IG G +
Sbjct: 1 MYKRARLKDTVEVPPQFLADVTPELVKRLLQDKLEGRMDEDVGSVVSVTEVHDIGEGAVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y ++ A+ F P EV+D V +V G F IGP+ + H S +D
Sbjct: 61 PNRPGVYYEAEFDALTFDPQMQEVVDGEVVEVVNFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + D +R +IV +D
Sbjct: 120 FDEEGQALASRESNRALGVGDSVRTRIVTKSID 152
>gi|344304860|gb|EGW35092.1| subunit of RNA polymerase [Spathaspora passalidarum NRRL Y-27907]
Length = 196
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 12/154 (7%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F + ++ +L ++ G VI + + I GL++
Sbjct: 1 MFVLTEITDLVRIPPHTFNIPIQHSITDELNKKLANKVIANLGLVITIWDLLDIKDGLLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM------FAEIGPLSCFISHHSIP 114
PG G V++R +V++PF GEVL V++ G+ F EI FI +
Sbjct: 61 PGDGGSYVEVQFRCVVWKPFVGEVLTGWVSECTPQGIKIRLEFFDEI-----FIPRAYLF 115
Query: 115 TDMQFCPNSNPVCYK-SVHGEVVIQEDDEIRLKI 147
+F P +K E+ I +++IR ++
Sbjct: 116 EGCEFKPVEKAWVWKPDEETELFIDINEKIRFRV 149
>gi|336121222|ref|YP_004575997.1| DNA-directed RNA polymerase [Methanothermococcus okinawensis IH1]
gi|334855743|gb|AEH06219.1| DNA-directed RNA polymerase [Methanothermococcus okinawensis IH1]
Length = 189
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 3/150 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ I++ + + P FG L E++ L + EG GF++++ I IG G +
Sbjct: 1 MYKLITISDTVRVPPYMFGAPLNESLHNILMKKYEGILDKDMGFILSIGEIKEIGEGKVI 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
G G +P + + + P EV++ V V + G+F +GPL I I D + +
Sbjct: 61 YGDGAAYHPAIFDVLCYMPELYEVVEGEVVDVVEFGVFIRLGPLDGLIHISQIMDDYVSY 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
P + K VI++ D +R +IV
Sbjct: 121 DPKREAIIGKETG--RVIEKGDRVRARIVA 148
>gi|17566938|ref|NP_505625.1| Protein RPC-25 [Caenorhabditis elegans]
gi|3881812|emb|CAA94858.1| Protein RPC-25 [Caenorhabditis elegans]
Length = 239
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L + + P +K++L + G I V I+ IG I
Sbjct: 1 MFILSLLHDTVAIQPHQLSSDQQIVIKKRLNERLANKIIPDLGLCICVYDINEIGDSYIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
PG+G VK+R IVFRPF EV++A V ++ G+
Sbjct: 61 PGEGDCRARVKFRMIVFRPFVDEVIEAKVIGSSRQGL 97
>gi|71017639|ref|XP_759050.1| hypothetical protein UM02903.1 [Ustilago maydis 521]
gi|46098719|gb|EAK83952.1| hypothetical protein UM02903.1 [Ustilago maydis 521]
Length = 249
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +E I +HP FG ++ ++ ++ G I++ I S G ++
Sbjct: 1 MFALAEIEDTISVHPSAFGQPSLTSISGQINTKYANKILVDVGLCISLFDILSCSEGKVR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQF 119
G G + + V +R IVFRPF EVL + ++ G+ +G +I +H IP F
Sbjct: 61 FGDGCLYHHVTFRLIVFRPFTQEVLTGKIKSSDEAGIRVSMGFFDDIYIPYHLIPKPCAF 120
>gi|388579438|gb|EIM19762.1| hypothetical protein WALSEDRAFT_55467 [Wallemia sebi CBS 633.66]
Length = 223
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L+ I + P L +++ + + G + + ++ G IQ
Sbjct: 1 MFILTELKDTIAVKPSNLNKDLLDSIVDSINYKYSNKIIQDLGLALCLHSLLDSSEGFIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQF 119
G V Y K+ I+FRPF GE+L A V ++ G+ A +G FI +++P Q+
Sbjct: 61 HSNGNVYYKCKFNLIIFRPFVGEILIAKVKSTSEEGITASVGFFDDIFIPIYNLPPITQY 120
>gi|325182910|emb|CCA17366.1| DNAdirected RNA polymerase III subunit RPC8 putative [Albugo
laibachii Nc14]
Length = 228
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + I +HP F +K+++ + G I+V +IG LI
Sbjct: 1 MFVLARISDVIAIHPMLFDGDYTRVLKEEIDKKFCNKVIADVGLCISVYDFIAIGDALIH 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNK 94
P +G V++R +VFRPF GEVL + N+
Sbjct: 61 PSEGDSHTQVEFRMVVFRPFIGEVLKGKILSCNE 94
>gi|346321041|gb|EGX90641.1| DNA-directed RNA polymerase II [Cordyceps militaris CM01]
Length = 201
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 113 IPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
IP+D ++ PN+ P + + + + VI+ +R+KI+GTR + ++AIG++ +DYLG
Sbjct: 146 IPSDTKWDPNATPPQFTN-NEDTVIEPSTHVRVKIIGTRTEVGEMWAIGSIKEDYLG 201
>gi|257386793|ref|YP_003176566.1| DNA-directed RNA polymerase subunit E' [Halomicrobium mukohataei
DSM 12286]
gi|257169100|gb|ACV46859.1| DNA-directed RNA polymerase [Halomicrobium mukohataei DSM 12286]
Length = 192
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L + + PR+ + VK+ L ++EG G +++V + IG G +
Sbjct: 1 MYKRVRLRDTVEVPPRHLADVSPDLVKKLLQDKLEGRMDEDVGSIVSVIDVKDIGEGAVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y ++ A+ F P EV+D V +V G F IGP+ + H S +D
Sbjct: 61 PNKPGVYYEAEFDALTFDPQMQEVVDGEVVEVVNFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + D +R +IV +D
Sbjct: 120 YDEEGQALASRESNRTLGTGDAVRARIVTKSID 152
>gi|452847392|gb|EME49324.1| hypothetical protein DOTSEDRAFT_163611 [Dothistroma septosporum
NZE10]
Length = 222
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ ++L + + P F +++ + ++ K G + ++ S GLI
Sbjct: 1 MYTLVTLADVVQIQPTEFSKPSMRSIEDYINAKYADKVIHKVGLCVGFHSLMSASEGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
G G V V +R IVFRPF+GE++ A +T+ + G+
Sbjct: 61 HGTGTVNVNVDFRLIVFRPFRGEIIRATITRADVSGL 97
>gi|323452814|gb|EGB08687.1| hypothetical protein AURANDRAFT_25657 [Aureococcus anophagefferens]
Length = 219
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ + + P FG + VK ++ ++ G + + +G GL+
Sbjct: 1 MFVLAEMQDTVRVAPGAFGKPTTDIVKAEVDAKYAARVVNDVGLCVCCRDVLDVGDGLVY 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P G Y + +VFRPF GE+ A + G+ A +G F +IP+ +F
Sbjct: 61 PLDGGATYKATFSLLVFRPFVGEIATATIVASGPEGVRASLG----FFEDVNIPS--KFL 114
Query: 121 PN 122
P
Sbjct: 115 PT 116
>gi|448341704|ref|ZP_21530661.1| DNA-directed RNA polymerase subunit E' [Natrinema gari JCM 14663]
gi|448347386|ref|ZP_21536258.1| DNA-directed RNA polymerase subunit E' [Natrinema altunense JCM
12890]
gi|445627118|gb|ELY80444.1| DNA-directed RNA polymerase subunit E' [Natrinema gari JCM 14663]
gi|445630787|gb|ELY84047.1| DNA-directed RNA polymerase subunit E' [Natrinema altunense JCM
12890]
Length = 189
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + P G + VK+ L ++EG + G V++VT + IG G +
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSPDRVKRLLQDKLEGRMDEEVGSVVSVTEVHDIGEGTVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y ++ A+ F P EV+D V +V + G F IGP+ + H S +D
Sbjct: 61 PNRPGVYYEAEFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + +D +R +IV +D
Sbjct: 120 FDGENQQLASNESARSLGVEDAVRARIVTKSID 152
>gi|145347797|ref|XP_001418348.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578577|gb|ABO96641.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 208
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 17/161 (10%)
Query: 1 MFYHISL-EHEILLHPRYFGPQLYETVKQKLYS----EVEGTCTGKYGFVIAVTTIDSIG 55
MF ++L + + + P G E V Q+L S +V C G + + +I +I
Sbjct: 1 MFQIVALSDGAVKIAPVNLGKSTLEAVTQELESLYVDKVLAECGG---LCVTLYSITNIS 57
Query: 56 AGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPT 115
G + G+G V + V ++ ++F+PF GEV++ + + G IG F PT
Sbjct: 58 GGTVLAGEGCVCFEVTFKVVLFKPFAGEVIEGTLLSADAHGAHVSIG---FFKDIFVPPT 114
Query: 116 DMQFCP----NSNPVCYKSVHGEVV-IQEDDEIRLKIVGTR 151
+MQ P + + V GE++ ++ + R K+V R
Sbjct: 115 NMQ-APSEYDDDSKVWMWDYDGELMEMKVGERFRFKVVAVR 154
>gi|393905506|gb|EJD73994.1| RNA polymerase Rpb7 domain-containing protein, variant [Loa loa]
Length = 207
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 22 LYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFK 81
L++ + ++L + G I + + IGA I PG G VK+R +VFRPF
Sbjct: 4 LFQMLMKRLNEQFANKIVPGLGLCIIIYDLVDIGASYILPGDGSTHTKVKFRFVVFRPFI 63
Query: 82 GEVLDAVVTQVNKVG-MFAEIGPLSCFISHHSIP 114
EV++A V N G M + I FI H +P
Sbjct: 64 DEVIEAKVLSSNAEGLMLSVIFFEDIFIPAHRLP 97
>gi|408404449|ref|YP_006862432.1| DNA-directed RNA polymerase, subunit E` [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365045|gb|AFU58775.1| DNA-directed RNA polymerase, subunit E` [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 196
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 49/116 (42%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P L + Q L + E + G+VI +T D+ G +
Sbjct: 1 MFAIVHMSDVVRIPPNRLTHSLKDAAIQILKEKYESMISPDVGYVIMITDADTSSVGKLV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
G G + V ++A+ F P E+++ V ++ G F IGP + I D
Sbjct: 61 AGDGATYHKVTFKALTFYPKLQEIVEGEVVEITDFGAFVRIGPTDALLHLSQITDD 116
>gi|14521883|ref|NP_127359.1| DNA-directed RNA polymerase subunit E' [Pyrococcus abyssi GE5]
gi|5459103|emb|CAB50589.1| rpoE1 DNA-directed RNA polymerase, subunit E' [Pyrococcus abyssi
GE5]
gi|380742519|tpe|CCE71153.1| TPA: DNA-directed RNA polymerase subunit E' [Pyrococcus abyssi GE5]
Length = 188
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 51/116 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ ++++ + + PR F E L EG G ++++ + +G G+I
Sbjct: 1 MYKIVTVKDVVRIPPRMFTMDPKEAAMLVLRETYEGKYDKDEGVILSIVEVKEVGDGIIV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
PG G + V + +V+ P + EV++ V G F IGP+ + + D
Sbjct: 61 PGDGATYHEVVFDVLVWEPKQQEVVEGTVVDAVPFGAFVRIGPMDGLVHISQLMDD 116
>gi|291333476|gb|ADD93176.1| putative RNA polymerase Rpb7 N terminal domain protein [uncultured
archaeon MedDCM-OCT-S06-C18]
Length = 184
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 5/127 (3%)
Query: 1 MFYHISLEHEILLHPRYF--GPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGL 58
M+ ++ E I + Y G L + + + EG + FV+ +IG G
Sbjct: 1 MYKVVTKEDTIRIPAEYMRKGQSLDQHIDRLSMDAFEGKFDDENRFVLVTNNHKTIGRGR 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSI---PT 115
I G G + V++ A++F EV++ V++VN+ G F IGP+ + I P
Sbjct: 61 IIHGDGAIYQRVQFDAVLFCMDDQEVVEGAVSEVNEFGAFVRIGPMEALLHKSQIMDEPV 120
Query: 116 DMQFCPN 122
D+ N
Sbjct: 121 DINIGAN 127
>gi|353240426|emb|CCA72296.1| related to RPC25-DNA-direcred RNA polymerase III, 25 KD subunit
[Piriformospora indica DSM 11827]
Length = 227
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + L P FG + E + ++L + G VI+V + G G ++
Sbjct: 1 MFILTEIRDTVALQPHTFGFEPTEVIARELNKKYANRILQDIGLVISVFDLTKCGEGKVR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
G G + Y V++R VFRPF EVL V ++ G+
Sbjct: 61 YGDGCLWYKVEFRLAVFRPFISEVLIGKVKSQDEDGI 97
>gi|157130759|ref|XP_001661998.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Aedes aegypti]
gi|108871791|gb|EAT36016.1| AAEL011866-PA [Aedes aegypti]
Length = 231
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L+ + + P F +L E +K ++ ++ G I + I +G +I
Sbjct: 1 MFVLAELKDTVRIAPELFNLKLPEAIKDEVNRKLANKVLLNVGLCITLKDIIKLGDSIIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R IVFRP G+V+ + ++ G+ +G
Sbjct: 61 PGDGASHTEVNFRYIVFRPMVGDVITGKIRSCSREGVHVTLG 102
>gi|403217141|emb|CCK71636.1| hypothetical protein KNAG_0H02220 [Kazachstania naganishii CBS
8797]
Length = 206
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ + + P F + V +L ++ G I+V + + G ++
Sbjct: 1 MFILSKIKELVRVPPDQFQRKTAFAVTHQLNTKYANKVIPNLGLCISVYDLLEVDEGQLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
PG G V +RA++F+PF GE+L +T N GM
Sbjct: 61 PGDGATYTNVTFRALIFKPFVGEILTGWITNCNANGM 97
>gi|340507548|gb|EGR33493.1| RNA polymerase n-terminal domain protein [Ichthyophthirius
multifiliis]
Length = 174
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 9/105 (8%)
Query: 11 ILLHP--------RYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPG 62
+L+HP R E +K++L+ +VEG + ++G +I +T I + +I
Sbjct: 12 LLIHPKDMHEIQRRTNDLNNNEFLKKELFQKVEGIESQQFGHIIYITNIRGLADPIIDL- 70
Query: 63 QGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCF 107
GF+ +++ AI F+ +G+ +D VV ++N + IGP F
Sbjct: 71 DGFIKVEIQFDAITFKLEEGQTVDIVVQKINNNSIDGTIGPDERF 115
>gi|221113754|ref|XP_002163071.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like [Hydra
magnipapillata]
Length = 202
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 5/153 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ I + P FG +++ L + G I + I IG I
Sbjct: 1 MFLLAEMKDVIQIMPYNFGHDFKSSLEFSLNKKFANKVVHNVGLCIVLFDITHIGDSYIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQF 119
PG G PV +R IVFRPF EVL A V + G+ +G FI + + +F
Sbjct: 61 PGNGASHTPVTFRFIVFRPFIDEVLVAKVKSCTREGVQVSLGFFDDIFIPYEYLQQKSKF 120
Query: 120 CPNSNPVC--YKSVHG--EVVIQEDDEIRLKIV 148
Y++ G ++ + ++EIR++++
Sbjct: 121 VDAEQLWVWQYETEEGSHDLYMDINEEIRIRVI 153
>gi|448338403|ref|ZP_21527450.1| DNA-directed RNA polymerase subunit E' [Natrinema pallidum DSM
3751]
gi|445622717|gb|ELY76162.1| DNA-directed RNA polymerase subunit E' [Natrinema pallidum DSM
3751]
Length = 189
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + P G + VK+ L ++EG + G +++VT + IG G +
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSPDRVKRLLQDKLEGRMDEEVGSIVSVTEVHDIGEGTVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y ++ A+ F P EV+D V +V + G F IGP+ + H S +D
Sbjct: 61 PNRPGVYYEAEFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + +D +R +IV +D
Sbjct: 120 FDGENQQLASNESARSLGVEDAVRARIVTKSID 152
>gi|255513911|gb|EET90176.1| DNA-directed RNA polymerase [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 195
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 2/114 (1%)
Query: 3 YHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPG 62
YHI + P F + E L + EG G ++A+ I I G I PG
Sbjct: 5 YHI--RDSFKMPPESFDKDIAEVAADVLQARYEGKIDKDIGLIVAIFGIKDITDGTIYPG 62
Query: 63 QGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
+ V+Y A+ + P GEV+ V+++ + G F +GP+ + I D
Sbjct: 63 DPSTHHGVEYDALTYMPKVGEVVAGDVSEMVEFGAFVRMGPMDGLVHVSQIAGD 116
>gi|15678292|ref|NP_275407.1| DNA-directed RNA polymerase subunit E' [Methanothermobacter
thermautotrophicus str. Delta H]
gi|2621314|gb|AAB84770.1| DNA-dependent RNA polymerase, subunit E' [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 184
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 3/149 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+Y + + + P F L E + L G G +I V I+ IG G +
Sbjct: 1 MYYVTKIVDTVRIPPDRFEEPLEEVAVEVLNETYVGRMDKNLGQLITVKEIEDIGIGKVI 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
G G + V + A+ F+P E+++ V ++ + G F IGP+ + + D + +
Sbjct: 61 MGDGAAYHEVTFTALFFKPELHEIVEGEVIEIAEFGAFVRIGPVDGLVHVSQVTDDYITY 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIV 148
P + K + E D +R +IV
Sbjct: 121 DPKKGSLTGKESGRR--LDEGDLVRARIV 147
>gi|292656032|ref|YP_003535929.1| DNA-directed RNA polymerase subunit E [Haloferax volcanii DS2]
gi|433418787|ref|ZP_20405085.1| DNA-directed RNA polymerase subunit E' [Haloferax sp. BAB2207]
gi|448290021|ref|ZP_21481177.1| DNA-directed RNA polymerase subunit E' [Haloferax volcanii DS2]
gi|448544947|ref|ZP_21625760.1| DNA-directed RNA polymerase subunit E' [Haloferax sp. ATCC BAA-646]
gi|448547324|ref|ZP_21626802.1| DNA-directed RNA polymerase subunit E' [Haloferax sp. ATCC BAA-645]
gi|448556202|ref|ZP_21631927.1| DNA-directed RNA polymerase subunit E' [Haloferax sp. ATCC BAA-644]
gi|448570176|ref|ZP_21639170.1| DNA-directed RNA polymerase subunit E' [Haloferax lucentense DSM
14919]
gi|448584804|ref|ZP_21647547.1| DNA-directed RNA polymerase subunit E' [Haloferax gibbonsii ATCC
33959]
gi|448599417|ref|ZP_21655321.1| DNA-directed RNA polymerase subunit E' [Haloferax alexandrinus JCM
10717]
gi|448607770|ref|ZP_21659723.1| DNA-directed RNA polymerase subunit E' [Haloferax sulfurifontis
ATCC BAA-897]
gi|448620323|ref|ZP_21667671.1| DNA-directed RNA polymerase subunit E' [Haloferax denitrificans
ATCC 35960]
gi|291370707|gb|ADE02934.1| DNA-directed RNA polymerase subunit E [Haloferax volcanii DS2]
gi|432199629|gb|ELK55786.1| DNA-directed RNA polymerase subunit E' [Haloferax sp. BAB2207]
gi|445580413|gb|ELY34792.1| DNA-directed RNA polymerase subunit E' [Haloferax volcanii DS2]
gi|445704725|gb|ELZ56634.1| DNA-directed RNA polymerase subunit E' [Haloferax sp. ATCC BAA-646]
gi|445716335|gb|ELZ68079.1| DNA-directed RNA polymerase subunit E' [Haloferax sp. ATCC BAA-645]
gi|445716954|gb|ELZ68683.1| DNA-directed RNA polymerase subunit E' [Haloferax sp. ATCC BAA-644]
gi|445723477|gb|ELZ75119.1| DNA-directed RNA polymerase subunit E' [Haloferax lucentense DSM
14919]
gi|445727658|gb|ELZ79268.1| DNA-directed RNA polymerase subunit E' [Haloferax gibbonsii ATCC
33959]
gi|445736878|gb|ELZ88418.1| DNA-directed RNA polymerase subunit E' [Haloferax alexandrinus JCM
10717]
gi|445737707|gb|ELZ89239.1| DNA-directed RNA polymerase subunit E' [Haloferax sulfurifontis
ATCC BAA-897]
gi|445757111|gb|EMA08467.1| DNA-directed RNA polymerase subunit E' [Haloferax denitrificans
ATCC 35960]
Length = 190
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + PR+ G E VK+ L ++EG G V++V ++ IG G +
Sbjct: 1 MYKRVRLKDTVEVPPRHLGDVTPERVKRLLQDKLEGRMDEDVGSVVSVVNVNDIGEGTVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y + AI + P EV+D +V +V + G F IGP+ + H S +D
Sbjct: 61 PNRPGVYYEADFDAITYDPDMQEVVDGIVVEVVEFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + DDE+R +IV +D
Sbjct: 120 YDGENQQLASTESNQTLAVDDEVRARIVTKSID 152
>gi|340059646|emb|CCC54039.1| putative RNA polymerase-like protein [Trypanosoma vivax Y486]
Length = 190
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 87/188 (46%), Gaps = 19/188 (10%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGT------CTGKYGFVIAV------ 48
MFY + L+ + + P G L+ + + L VEG G+ G V V
Sbjct: 1 MFYKLELQKILKVEPHLLGRTLHRHLAKYLREAVEGQPLQLPLSKGENGEVFRVDQNSSA 60
Query: 49 ---TTIDSIGAGLIQP---GQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEI- 101
+D + ++ G V + ++Y A+VF+ +GEV+D VV +V + G + +
Sbjct: 61 MIIAVLDILNTETLEGRVLDDGSVSFLLQYEALVFKLHRGEVVDVVVNKVEREGWWGMVM 120
Query: 102 GPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIG 161
G +ISH I ++ + + + + G ++ + +R+++V + G+ A+G
Sbjct: 121 GVGRMYISHGQIGSEWVYESDGIEGIWITKDGSRSVKAGEIVRVRVVAETPQSEGVIAVG 180
Query: 162 TLMDDYLG 169
++ +YLG
Sbjct: 181 SMNGNYLG 188
>gi|389847431|ref|YP_006349670.1| DNA-directed RNA polymerase subunit E' [Haloferax mediterranei ATCC
33500]
gi|448617209|ref|ZP_21665864.1| DNA-directed RNA polymerase subunit E' [Haloferax mediterranei ATCC
33500]
gi|388244737|gb|AFK19683.1| DNA-directed RNA polymerase subunit E' [Haloferax mediterranei ATCC
33500]
gi|445748558|gb|EMA00005.1| DNA-directed RNA polymerase subunit E' [Haloferax mediterranei ATCC
33500]
Length = 190
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + PR+ G E VK+ L ++EG G V++V ++ IG G +
Sbjct: 1 MYKRVRLKDTVEVPPRHLGDVTPERVKRLLQDKLEGRMDEDVGSVVSVVNVNDIGEGTVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y + AI + P EV+D +V +V + G F IGP+ + H S +D
Sbjct: 61 PNRPGVYYEADFDAITYDPDMQEVVDGIVVEVVEFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + DDE+R +IV +D
Sbjct: 120 YDGENQQLASTESNQTLAVDDEVRARIVTKSID 152
>gi|325968980|ref|YP_004245172.1| DNA-directed RNA polymerase [Vulcanisaeta moutnovskia 768-28]
gi|323708183|gb|ADY01670.1| DNA-directed RNA polymerase [Vulcanisaeta moutnovskia 768-28]
Length = 197
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 62/149 (41%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++LE I + P FG L + L+ E G G +A+ ++ G++
Sbjct: 1 MFRVLTLEDHIRIPPSRFGEPLERVAFEVLWGEYVGRVERDVGVYVAIFDVEVSRRGVVI 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G V+++A+V+ P EV++ V + G F +GP+ I + D
Sbjct: 61 FGDGATYNRVRFKALVYTPLVNEVVEGEVVRTEDFGAFVRVGPIDALIHRTQMMEDNVVL 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
+ + + D +R ++VG
Sbjct: 121 YDKQSGAFVGERSRRRLGRGDVVRARVVG 149
>gi|341899564|gb|EGT55499.1| hypothetical protein CAEBREN_06283 [Caenorhabditis brenneri]
Length = 214
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 43/97 (44%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L I + P F +K++L + G I V I IG I
Sbjct: 1 MFILSLLRDTIAIKPHQFVVDQQMVIKKRLNERLANRVVPDLGLCICVYDISEIGDSYIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
PG+G V +R IVFRPF EV++A V ++ G+
Sbjct: 61 PGEGDCRARVTFRMIVFRPFVDEVIEAKVIGSSRQGL 97
>gi|448612515|ref|ZP_21662537.1| DNA-directed RNA polymerase subunit E' [Haloferax mucosum ATCC
BAA-1512]
gi|445741363|gb|ELZ92865.1| DNA-directed RNA polymerase subunit E' [Haloferax mucosum ATCC
BAA-1512]
Length = 190
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + PR+ G E VK+ L ++EG G V++V ++ IG G +
Sbjct: 1 MYKRVRLKDTVEVPPRHLGDVTPERVKRLLQDKLEGRMDEDVGSVVSVVNVNDIGEGTVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y + AI + P EV+D +V +V + G F IGP+ + H S +D
Sbjct: 61 PNRPGVYYEADFDAITYDPDMQEVVDGIVVEVVEFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + DDE+R +IV +D
Sbjct: 120 YDGENQQLASTESNQTLAVDDEVRARIVTKSID 152
>gi|448566865|ref|ZP_21637120.1| DNA-directed RNA polymerase subunit E' [Haloferax prahovense DSM
18310]
gi|445713454|gb|ELZ65231.1| DNA-directed RNA polymerase subunit E' [Haloferax prahovense DSM
18310]
Length = 190
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + PR+ G E VK+ L ++EG G V++V ++ IG G +
Sbjct: 1 MYKRVRLKDTVEVPPRHLGDVTPERVKRLLQDKLEGRMDEDVGSVVSVVNVNDIGEGTVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y + AI + P EV+D +V +V + G F IGP+ + H S +D
Sbjct: 61 PSRPGVYYEADFDAITYDPDMQEVVDGIVVEVVEFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + DDE+R +IV +D
Sbjct: 120 YDGENQQLASTESNQTLAVDDEVRARIVTKSID 152
>gi|16082590|ref|NP_394548.1| DNA-directed RNA polymerase subunit E' [Thermoplasma acidophilum
DSM 1728]
Length = 192
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 32 SEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQ 91
+E GKY VI+V +SIG G I G G V VKYRA+V+ P E++D V
Sbjct: 43 NEKTSQNEGKY-LVISVLYTESIGEGTIVHGDGGVYQEVKYRALVYYPEMQEIVDGEVVS 101
Query: 92 VNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR 151
V K G F + + H S D + + + + ++ D +R++IV
Sbjct: 102 VQKFGAFIKFSSFEGLL-HISQIMDDRIDIDLENKRFIGKETKRDLKVGDRVRVRIVAMN 160
Query: 152 VDASGI 157
+ +S I
Sbjct: 161 LASSSI 166
>gi|359487938|ref|XP_002264240.2| PREDICTED: DNA-directed RNA polymerase III subunit rpc8 [Vitis
vinifera]
Length = 152
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ +EH + L P L E +K +L S G I V I S G +
Sbjct: 1 MFFLSLIEHTLQLSPHLLDLPLSEAIKGELESLFLDKVIANLGLCIFVNDIRSTACGFVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
G Y V++R ++FR F E++ A + + N G+
Sbjct: 61 LGNSTSTYTVEFRLVMFRLFVKEIITAKLNKSNVNGL 97
>gi|448577214|ref|ZP_21642844.1| DNA-directed RNA polymerase subunit E' [Haloferax larsenii JCM
13917]
gi|445727859|gb|ELZ79468.1| DNA-directed RNA polymerase subunit E' [Haloferax larsenii JCM
13917]
Length = 190
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + PR+ G E VK+ L ++EG G V++V + IG G +
Sbjct: 1 MYKRVRLKDTVEVPPRHLGDVTPERVKRLLQDKLEGRMDEDVGSVVSVVNVHDIGEGTVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y ++ AI + P EV+D +V +V + G F IGP+ + H S +D
Sbjct: 61 PNRPGVYYEAEFDAITYDPDMQEVVDGIVVEVVEFGAFIGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + DDE+R +IV +D
Sbjct: 120 YDGENQQLASTESNQTLAVDDEVRARIVTKSID 152
>gi|388853764|emb|CCF52485.1| related to RPC25-DNA-direcred RNA polymerase III, 25 KD subunit
[Ustilago hordei]
Length = 234
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +E I +HP FG ++ ++ + G I++ I S G ++
Sbjct: 1 MFVLADIEDTISVHPSAFGQPSLTSISDQINIKYANKILVDVGLCISLFDILSCSEGKVR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQF 119
G G + + V +R IVFRPF EVL + ++ G+ +G ++ H IP F
Sbjct: 61 FGDGCLYHHVTFRLIVFRPFTQEVLTGKIKSSDEAGIHITVGFFDDIYVPSHLIPKPCAF 120
>gi|242398022|ref|YP_002993446.1| DNA-directed RNA polymerase, subunit E' [Thermococcus sibiricus MM
739]
gi|242264415|gb|ACS89097.1| DNA-directed RNA polymerase, subunit E' [Thermococcus sibiricus MM
739]
Length = 187
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 1/149 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + ++ + + P+ F E K L EG G V+AV + I G+I
Sbjct: 1 MYRLLRVKDIVRIPPKMFTLDPKEAAKIVLREAYEGIYNKDEGVVLAVLEVHEISEGVII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + V + +V++P EV++ V V G F IGP+ + + D
Sbjct: 61 PGDGATYHDVVFDVLVWKPEMHEVVEGEVIDVVPYGAFIRIGPMDGLVHISQLMDDYVVF 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
N G V++ D +R +I+
Sbjct: 121 DEKNAQFVGKEKGH-VLKLGDVVRARIIA 148
>gi|298204961|emb|CBI34268.3| unnamed protein product [Vitis vinifera]
Length = 101
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+ +EH + L P L E +K +L S G I V I S G +
Sbjct: 1 MFFLSLIEHTLQLSPHLLDLPLSEAIKGELESLFLDKVIANLGLCIFVNDIRSTACGFVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
G Y V++R ++FR F E++ A + + N G+
Sbjct: 61 LGNSTSTYTVEFRLVMFRLFVKEIITAKLNKSNVNGL 97
>gi|407929309|gb|EKG22141.1| RNA polymerase Rpb7 [Macrophomina phaseolina MS6]
Length = 200
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ I + P F + +K ++++ + G I + I GLI
Sbjct: 1 MFLTTTISDLIQIKPEEFEKSSIQAIKDAIHTKYANKVIQEVGLCICLRDILKSSEGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
G G V V++R ++FRPFKGE+++ ++ + G+
Sbjct: 61 HGTGIVNVNVEFRLVIFRPFKGEIIEGKISGSDHEGI 97
>gi|448593403|ref|ZP_21652401.1| DNA-directed RNA polymerase subunit E' [Haloferax elongans ATCC
BAA-1513]
gi|445730311|gb|ELZ81901.1| DNA-directed RNA polymerase subunit E' [Haloferax elongans ATCC
BAA-1513]
Length = 190
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + PR+ G E VK+ L ++EG G V++V + IG G +
Sbjct: 1 MYKRVRLKDTVEVPPRHLGDVTPERVKRLLQDKLEGRMDEDVGSVVSVVNVHDIGEGTVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y ++ AI + P EV+D +V +V + G F IGP+ + H S +D
Sbjct: 61 PSRPGVYYEAEFDAITYDPDMQEVVDGIVVEVVEFGAFIGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + DDE+R +IV +D
Sbjct: 120 YDGENQQLASTESNQTLAVDDEVRARIVTKSID 152
>gi|194748262|ref|XP_001956568.1| GF25280 [Drosophila ananassae]
gi|190623850|gb|EDV39374.1| GF25280 [Drosophila ananassae]
Length = 244
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L+ + + P F QL + V+ ++ ++ G IA+ I S+ +I
Sbjct: 1 MFVLAELKDNVRIAPDQFNLQLVDAVRDEIDRKLANKVLLNVGLCIALKEIVSLKDSIIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VFRP G VL + ++ G+ +G
Sbjct: 61 PGDGASHTEVLFRYVVFRPMVGTVLTGKIRNCSREGVHVTLG 102
>gi|395325654|gb|EJF58073.1| polymerase III polypeptide H [Dichomitus squalens LYAD-421 SS1]
Length = 220
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ + +HP FG + + +L + G I V + +G G ++
Sbjct: 1 MFQLSIIKDTVAVHPSQFGLSPEQAITNELNKKYANRVLHDVGLCICVFDLAEVGEGKVR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
G G + Y V +R VFRPF EV+ A V ++ G+ +G
Sbjct: 61 YGDGCLWYKVVFRLTVFRPFASEVIIAKVKSSDEDGVRLTVG 102
>gi|10640403|emb|CAC12217.1| DNA-directed RNA polymerase, subunit E related protein
[Thermoplasma acidophilum]
Length = 189
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 32 SEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQ 91
+E GKY VI+V +SIG G I G G V VKYRA+V+ P E++D V
Sbjct: 40 NEKTSQNEGKY-LVISVLYTESIGEGTIVHGDGGVYQEVKYRALVYYPEMQEIVDGEVVS 98
Query: 92 VNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR 151
V K G F + + H S D + + + + ++ D +R++IV
Sbjct: 99 VQKFGAFIKFSSFEGLL-HISQIMDDRIDIDLENKRFIGKETKRDLKVGDRVRVRIVAMN 157
Query: 152 VDASGI 157
+ +S I
Sbjct: 158 LASSSI 163
>gi|393221996|gb|EJD07480.1| hypothetical protein FOMMEDRAFT_143872 [Fomitiporia mediterranea
MF3/22]
Length = 243
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 3/143 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +++ + L P F + + +L + G I V I G G ++
Sbjct: 1 MFVLSTIKDTVALQPSTFALPAEQAIINELNKKYANRVLHDVGLCICVFDIAQAGEGKVR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQF 119
G G + + V +R +VFRPF GEV+ A V ++ G+ IG I +P F
Sbjct: 61 YGDGCLWHRVVFRMVVFRPFSGEVILAKVKSSDEEGIRLSIGFFDDMHIPPSYLPAPSAF 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDE 142
P+ + + H ++ED E
Sbjct: 121 DPSERAYFWIAKHAP--LEEDPE 141
>gi|311977761|ref|YP_003986881.1| putative DNA-directed RNA polymerase subunit [Acanthamoeba
polyphaga mimivirus]
gi|82000302|sp|Q5UQW1.1|YL376_MIMIV RecName: Full=Putative DNA-directed RNA polymerase subunit L376
gi|55416995|gb|AAV50645.1| unknown [Acanthamoeba polyphaga mimivirus]
gi|308204366|gb|ADO18167.1| putative DNA-directed RNA polymerase subunit [Acanthamoeba
polyphaga mimivirus]
gi|339061307|gb|AEJ34611.1| hypothetical protein MIMI_L376 [Acanthamoeba polyphaga mimivirus]
gi|351737530|gb|AEQ60565.1| putative DNA-directed RNA polymerase subunit [Acanthamoeba
castellanii mamavirus]
gi|398257209|gb|EJN40817.1| hypothetical protein lvs_L313 [Acanthamoeba polyphaga
lentillevirus]
Length = 199
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 78/169 (46%), Gaps = 8/169 (4%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
+++ LE ++ L P + + + L ++V+ T ++G V+ V I G+I
Sbjct: 6 LYFQTKLEDKVSLLPSQMVGNMENYLLENLEAKVKDKVT-EHGIVLKVNRIIEYDYGIIS 64
Query: 61 PGQ--GFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
G +Y VKY ++ P K + +V + K + A+ GP+ I ++I +D
Sbjct: 65 KNNFSGTAIYRVKYECLICSPVKNLSIICLVENIVKGYIIAKNGPVIVAIPFNNIDSDKF 124
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVG--TRVDASGIFAIGTLMD 165
N N + YK+ IQ+ D +++ I+ T ++ I I L+D
Sbjct: 125 QLTNGN-IVYKNNSNN--IQKGDYVKVSIINIKTNLNEKKITTIAKLLD 170
>gi|432328391|ref|YP_007246535.1| DNA-directed RNA polymerase subunit E' [Aciduliprofundum sp.
MAR08-339]
gi|432135100|gb|AGB04369.1| DNA-directed RNA polymerase subunit E' [Aciduliprofundum sp.
MAR08-339]
Length = 196
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 13/129 (10%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGT------------CTGKYGFVIAV 48
M+ + E I + P G L V+ ++EG KY ++ +
Sbjct: 1 MYLIVEQEDVIRIPPPMLGEDLDRVVEDLAREKIEGNVYSFPREEVSDPAERKY-IIVLI 59
Query: 49 TTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFI 108
+++ +G G+I PG G V V+++A+ F P EV+ V V K G F GP+ +
Sbjct: 60 LSLEKVGEGIIVPGDGAVYQKVRFKALAFHPELQEVVIGDVVDVLKFGAFVRFGPIDGLL 119
Query: 109 SHHSIPTDM 117
I D+
Sbjct: 120 HISQIMDDV 128
>gi|170290952|ref|YP_001737768.1| DNA-directed RNA polymerase subunit E' [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175032|gb|ACB08085.1| DNA-directed RNA polymerase, subunit E' [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 191
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 55/117 (47%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
+FY + + + P G L E +K++ ++ G + G ++ V I + G
Sbjct: 11 LFYEVEMSDVGYIRPLDLGKDLKEILKKQFRAKYVGRFVKEAGLILDVLDIVDMSYGTSV 70
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDM 117
G + V +RA+ + P K EV++ V V + G+F +GP++ F+ + D+
Sbjct: 71 IGSPNIYVRVNFRALSYIPMKDEVIEGEVENVVEYGVFVTVGPINGFVHISQLGDDV 127
>gi|352681821|ref|YP_004892345.1| DNA-directed RNA polymerase subunit E' [Thermoproteus tenax Kra 1]
gi|350274620|emb|CCC81265.1| DNA-directed RNA polymerase, subunit E' [Thermoproteus tenax Kra 1]
Length = 189
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 62/148 (41%)
Query: 2 FYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQP 61
F + E I + P F L + +L S+ EG G+V+AV G+I
Sbjct: 3 FRLVEAEDYIRVPPSDFNKPLEDVALGQLRSKYEGKSFRDLGYVVAVLDAKVNREGVIIF 62
Query: 62 GQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCP 121
G G + + + F P GEV+ +V +VG+ IGP+ FI+ + +
Sbjct: 63 GDGATYHKAIFHILTFMPLDGEVVHGIVESAREVGVMVRIGPVLGFINKIHLMDEPNVLF 122
Query: 122 NSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
+++ + + + D +R +I G
Sbjct: 123 DASTKSFIGERTKKKLSIGDVVRARITG 150
>gi|300176594|emb|CBK24259.2| unnamed protein product [Blastocystis hominis]
Length = 272
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++++ I + P FG + +T+ +++ + +YG IA I +
Sbjct: 1 MFILLTIKDVIRIEPSQFGEEHVQTLIKEINRKYSNKVIPEYGLCIAFYDFVEIEDSKVY 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
PG G VK+R I+FRP +GE++ V N G+
Sbjct: 61 PGDGACHTGVKFRMILFRPVEGEIIVGTVLSSNMSGI 97
>gi|269986774|gb|EEZ93053.1| RNA polymerase Rpb7 domain protein [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 177
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 9/166 (5%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ I+L +I + P E + + G + ++ + IDSI G+I
Sbjct: 1 MYEIITLRDKIRVEPNKLQEDRKEAATEIIRQNYIGKIIEEKALLVGLIGIDSIEEGIII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD--MQ 118
P + Y +R + + P E + VT+V+++G IGPL +H S D +
Sbjct: 61 PNDASIYYDTIFRMLAYLPTLHETVKGQVTEVSEIGAIVNIGPLDGL-AHISQTMDDFVD 119
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLM 164
F N + I+ D I I+ V G+ +G M
Sbjct: 120 FSKN----ALTGRRTKTTIKTGDTIVASIIA--VSTKGMMKVGLTM 159
>gi|304314475|ref|YP_003849622.1| DNA-directed RNA polymerase subunit E' [Methanothermobacter
marburgensis str. Marburg]
gi|302587934|gb|ADL58309.1| predicted DNA-directed RNA polymerase subunit E'
[Methanothermobacter marburgensis str. Marburg]
Length = 184
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 1/148 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+Y + + + P F L E + L G G +I V I+ IG G +
Sbjct: 1 MYYITKIVDTVRIPPDRFEEPLEEVAIEVLNETYVGRMDRNLGQMITVKEIEDIGIGKVI 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + V + A+ F+P E+++ V ++ + G F IGP+ + H S TD
Sbjct: 61 MGDGAAYHEVTFTALFFKPELHEIVEGEVIEIAEFGAFVRIGPVDGLV-HVSQVTDDYIT 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIV 148
++ + E D +R +IV
Sbjct: 120 YDAKKGSLTGKETGKRLDEGDLVRARIV 147
>gi|289581160|ref|YP_003479626.1| DNA-directed RNA polymerase [Natrialba magadii ATCC 43099]
gi|448284828|ref|ZP_21476083.1| DNA-directed RNA polymerase subunit E' [Natrialba magadii ATCC
43099]
gi|289530713|gb|ADD05064.1| DNA-directed RNA polymerase [Natrialba magadii ATCC 43099]
gi|445568861|gb|ELY23437.1| DNA-directed RNA polymerase subunit E' [Natrialba magadii ATCC
43099]
Length = 189
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + P G VK+ L ++EG + G +++VT + IG G +
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSPTLVKRLLQDKLEGRMDEEVGSIVSVTEVRDIGEGTVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y + A+ F P EV+D V +V + G F IGP+ + H S +D
Sbjct: 61 PNRPGVYYEADFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
++ S + D IR +IV +D
Sbjct: 120 FDAENQQLASNESNRTLGVGDPIRARIVTKSID 152
>gi|345566306|gb|EGX49249.1| hypothetical protein AOL_s00078g282 [Arthrobotrys oligospora ATCC
24927]
Length = 194
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 10/153 (6%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L + + P F + ++ ++ + K G VI + I GLI
Sbjct: 1 MFILTRLSDLVTIQPTSFTVTTRQALEDQINARYANKVIHKVGLVICLYDILKSSDGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ-- 118
G G V V++R IVFRPFKGEV+ + G+ F +P D
Sbjct: 61 SGTGDVNINVEFRLIVFRPFKGEVITGRIANSTPNGIHVRFD----FFDEVFLPKDYLFE 116
Query: 119 ---FCPNSNPVCYKSVHG-EVVIQEDDEIRLKI 147
F N +++ G E+ +++ +R ++
Sbjct: 117 GSVFDHNEQVWVWRTEDGDELFFDKNESVRFRV 149
>gi|170101368|ref|XP_001881901.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164643256|gb|EDR07509.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 238
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 1/125 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ + +HP FG E + ++ + G + + + G G ++
Sbjct: 1 MFQLSIIKDTLSVHPSNFGVPPDEALIAEINKKYANRVLHDLGLCVCLFDLVQAGEGKVR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQF 119
G GF+ Y V +R +VFRPF EV+ A V ++ G+ IG I +P F
Sbjct: 61 YGDGFLWYKVVFRMVVFRPFTSEVIIAKVKSSDEDGIRLTIGFFDDMHIPAAYLPQPSAF 120
Query: 120 CPNSN 124
PN
Sbjct: 121 DPNER 125
>gi|330833934|ref|YP_004408662.1| DNA-directed RNA polymerase subunit E' [Metallosphaera cuprina
Ar-4]
gi|329566073|gb|AEB94178.1| DNA-directed RNA polymerase subunit E' [Metallosphaera cuprina
Ar-4]
Length = 176
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF I + + + P FG L +T L +E + G V+ V + G+I
Sbjct: 1 MFKVIKAKGVVRIPPELFGEPLSKTALDILNNEYKERLFKDLGLVLTVIKANVSEEGMIV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
G G + V++ + F P EV++ +TQV+ G++ +GP+ + I D
Sbjct: 61 FGDGATYHEVEFELLTFLPIIQEVVEGDITQVDNYGIYVNMGPMDGLVHVSQIGDD 116
>gi|50550449|ref|XP_502697.1| YALI0D11396p [Yarrowia lipolytica]
gi|49648565|emb|CAG80885.1| YALI0D11396p [Yarrowia lipolytica CLIB122]
Length = 202
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 61/149 (40%), Gaps = 2/149 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF I L P F L + + ++ + G I V + ++G G +
Sbjct: 1 MFILTRFTDLIRLDPTSFKKPLNDAIVDEINNCYANKIIDGVGLCICVYDLITVGEGQVM 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQF 119
G G + +R +VFRPF GEVL+ ++ G+ ++ FI H + + QF
Sbjct: 61 SGDGAAFVKITFRMVVFRPFVGEVLEGWISSCTAEGIKVKMEFFDDIFIPAHLLFENSQF 120
Query: 120 CPNSNPVCY-KSVHGEVVIQEDDEIRLKI 147
+ E+ + +++IR +I
Sbjct: 121 VAREQAWMWCPDEEQELFLDTNEKIRFRI 149
>gi|167535085|ref|XP_001749217.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772370|gb|EDQ86023.1| predicted protein [Monosiga brevicollis MX1]
Length = 1167
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +L+ + L P+ FG + + ++ + K G I + I I +
Sbjct: 1 MFRVATLKDIVQLKPKRFGENRVDALTHEINKKYANKVIYKLGLAICLFDIVEIKEAHVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVV 89
PG G + V++R +VFRPF GEVL +
Sbjct: 61 PGDGSAHFYVQFRLVVFRPFTGEVLKGAI 89
>gi|195128795|ref|XP_002008847.1| GI13714 [Drosophila mojavensis]
gi|193920456|gb|EDW19323.1| GI13714 [Drosophila mojavensis]
Length = 245
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L+ + + P +F +L + V+ ++ ++ G IA+ I S+ +I
Sbjct: 1 MFVLAELKDNVRIAPDHFNLKLVDAVRDEIDRKLANKVLLNVGLCIAMKEIVSLKDSIIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R IVFRP G V+ + ++ G+ +G
Sbjct: 61 PGDGASHTEVLFRYIVFRPMVGTVMTGKIRNCSREGVNVTLG 102
>gi|164656000|ref|XP_001729128.1| hypothetical protein MGL_3595 [Malassezia globosa CBS 7966]
gi|159103018|gb|EDP41914.1| hypothetical protein MGL_3595 [Malassezia globosa CBS 7966]
Length = 232
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 11/125 (8%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +E I + PR+F + + +++ + G I V I G ++
Sbjct: 1 MFVLSEIEDVIKVEPRHFSRPSAKAIAEQINVKYANKVLQDIGLCICVHDILRSSEGRVR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVN------KVGMFAEIGPLSCFISHHSIP 114
G G + Y V +R +VFRPF EVL ++ VG F +I FI H +P
Sbjct: 61 WGDGCLYYTVVFRLVVFRPFTNEVLVGRISSSTSESIRISVGFFDDI-----FIPPHFLP 115
Query: 115 TDMQF 119
T F
Sbjct: 116 TPSAF 120
>gi|448357498|ref|ZP_21546196.1| DNA-directed RNA polymerase subunit E' [Natrialba chahannaoensis
JCM 10990]
gi|445648675|gb|ELZ01624.1| DNA-directed RNA polymerase subunit E' [Natrialba chahannaoensis
JCM 10990]
Length = 189
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + P G VK+ L ++EG G +++VT + IG G +
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSPTLVKRLLQDKLEGRMDEDVGSIVSVTEVRDIGDGTVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y + A+ F P EV+D V +V + G F IGP+ + H S +D
Sbjct: 61 PNRPGVYYEADFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
++ S + D IR +IV +D
Sbjct: 120 FDAENQQLASNESNRTLGVGDPIRARIVTKSID 152
>gi|389745440|gb|EIM86621.1| polymerase III polypeptide H [Stereum hirsutum FP-91666 SS1]
Length = 220
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ I + P +FG + + +L + G I V I G G ++
Sbjct: 1 MFVLSIIKDTIPIQPSHFGLPPEQALITELNKKYANKVLHDVGLCICVFDIAEAGEGKVR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
G GF+ Y V +R VFRPF EV+ A V ++ G+ +G
Sbjct: 61 YGDGFLWYAVVFRLTVFRPFPSEVILAKVKSSDEDGIHLSVG 102
>gi|448406868|ref|ZP_21573300.1| DNA-directed RNA polymerase subunit E' [Halosimplex carlsbadense
2-9-1]
gi|445676674|gb|ELZ29191.1| DNA-directed RNA polymerase subunit E' [Halosimplex carlsbadense
2-9-1]
Length = 192
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ ++L + + P + VK+ L ++EG G V++V + IG G +
Sbjct: 1 MYKRVTLRDTVEVPPAHLAEVTPGLVKRLLQDKLEGRMDEDVGSVVSVIDVHDIGEGAVV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PGQ V + ++ A+ F P EV+D V +V G F IGP+ + H S +D
Sbjct: 61 PGQEGVYFTAEFDALTFDPQMQEVVDGEVVEVVNFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + D +R +IV +D
Sbjct: 120 YDEEGQMLSSRDSNRTLGVGDAVRARIVTKSID 152
>gi|302810586|ref|XP_002986984.1| hypothetical protein SELMODRAFT_235152 [Selaginella moellendorffii]
gi|300145389|gb|EFJ12066.1| hypothetical protein SELMODRAFT_235152 [Selaginella moellendorffii]
Length = 155
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 47/101 (46%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L + + P L + + +++ G +++ I SI G +
Sbjct: 1 MFVLSKLRDTLRIPPANLVLPLLDAITLEIHRLFLDKVVKDLGLCVSLYDIQSIEGGFVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEI 101
PG G Y V+++ ++FRPF GE+L A + + +K G+ +
Sbjct: 61 PGDGAPTYTVEFQLVMFRPFPGEILVAKLKKCDKNGLVCNV 101
>gi|13541317|ref|NP_111005.1| DNA-directed RNA polymerase subunit E' [Thermoplasma volcanium
GSS1]
Length = 192
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Query: 32 SEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQ 91
+E G GKY VI++ + ++G G I G G V VKY A+VF P E++D V
Sbjct: 43 NEKTGVNEGKY-LVISIISTKAVGEGSIVHGDGGVYQEVKYSALVFYPEMQEIVDGEVVS 101
Query: 92 VNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR 151
V K G F + + H S D + + + + ++ D++R++IV
Sbjct: 102 VQKFGAFVKFSSFEGLL-HISQIMDDRIDVDLENKRFIGKDTKRDLKVGDKVRVRIVALN 160
Query: 152 VDASGI 157
+ +S +
Sbjct: 161 LASSSV 166
>gi|330804580|ref|XP_003290271.1| hypothetical protein DICPUDRAFT_20776 [Dictyostelium purpureum]
gi|325079597|gb|EGC33189.1| hypothetical protein DICPUDRAFT_20776 [Dictyostelium purpureum]
Length = 234
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 68/157 (43%), Gaps = 20/157 (12%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKY----GFVIAVTTIDSIGA 56
MF+ +++E + + P F ++ Q + E+E K G IA+ I G
Sbjct: 1 MFHLLTIEDRVRIPPNDFNNEV-----QTIEDEIEKKYVSKVVLDGGLFIALYDILGTGD 55
Query: 57 GLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNK------VGMFAEIGPLSCFISH 110
+ G G V++R +VF+PFKGE+++ V+ + K +G + EI +++
Sbjct: 56 SYVYSGDGAAHLMVRFRMVVFKPFKGEIMEGVIKKSTKDQVQITIGFYDEI-----YLNP 110
Query: 111 HSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKI 147
+P F ++ ++ + +R ++
Sbjct: 111 IELPIPSSFSDEEKLWYWEWNDNQLFFENGGRVRFRV 147
>gi|55379439|ref|YP_137289.1| DNA-directed RNA polymerase subunit E' [Haloarcula marismortui ATCC
43049]
gi|344210409|ref|YP_004794729.1| DNA-directed RNA polymerase subunit E' [Haloarcula hispanica ATCC
33960]
gi|448628572|ref|ZP_21672341.1| DNA-directed RNA polymerase subunit E' [Haloarcula vallismortis
ATCC 29715]
gi|448638902|ref|ZP_21676572.1| DNA-directed RNA polymerase subunit E' [Haloarcula sinaiiensis ATCC
33800]
gi|448648753|ref|ZP_21679818.1| DNA-directed RNA polymerase subunit E' [Haloarcula californiae ATCC
33799]
gi|448679971|ref|ZP_21690410.1| DNA-directed RNA polymerase subunit E' [Haloarcula argentinensis
DSM 12282]
gi|448683330|ref|ZP_21692219.1| DNA-directed RNA polymerase subunit E' [Haloarcula japonica DSM
6131]
gi|55232164|gb|AAV47583.1| DNA-directed RNA polymerase subunit E' [Haloarcula marismortui ATCC
43049]
gi|343781764|gb|AEM55741.1| DNA-directed RNA polymerase subunit E' [Haloarcula hispanica ATCC
33960]
gi|445758103|gb|EMA09428.1| DNA-directed RNA polymerase subunit E' [Haloarcula vallismortis
ATCC 29715]
gi|445763234|gb|EMA14437.1| DNA-directed RNA polymerase subunit E' [Haloarcula sinaiiensis ATCC
33800]
gi|445769619|gb|EMA20692.1| DNA-directed RNA polymerase subunit E' [Haloarcula argentinensis
DSM 12282]
gi|445774497|gb|EMA25513.1| DNA-directed RNA polymerase subunit E' [Haloarcula californiae ATCC
33799]
gi|445784003|gb|EMA34825.1| DNA-directed RNA polymerase subunit E' [Haloarcula japonica DSM
6131]
Length = 192
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L + + PR+ VK+ L ++EG G V++V + IG G +
Sbjct: 1 MYKRVRLRDTVEVPPRFLAEVSPGLVKRLLQEKLEGRMDEDVGSVVSVIEVHDIGTGAVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y ++ A+ F P EV+D V +V G F IGP+ + H S +D
Sbjct: 61 PNKPGVYYEAEFDALTFDPQMQEVVDGEVVEVVNFGAFIGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + D +R +IV +D
Sbjct: 120 YDEENQQLASRESNRTLTVGDAVRARIVTKSID 152
>gi|14324700|dbj|BAB59627.1| DNA-directed RNA polymerase E' [Thermoplasma volcanium GSS1]
Length = 195
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Query: 32 SEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQ 91
+E G GKY VI++ + ++G G I G G V VKY A+VF P E++D V
Sbjct: 46 NEKTGVNEGKY-LVISIISTKAVGEGSIVHGDGGVYQEVKYSALVFYPEMQEIVDGEVVS 104
Query: 92 VNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR 151
V K G F + + H S D + + + + ++ D++R++IV
Sbjct: 105 VQKFGAFVKFSSFEGLL-HISQIMDDRIDVDLENKRFIGKDTKRDLKVGDKVRVRIVALN 163
Query: 152 VDASGI 157
+ +S +
Sbjct: 164 LASSSV 169
>gi|448664157|ref|ZP_21683960.1| DNA-directed RNA polymerase subunit E' [Haloarcula amylolytica JCM
13557]
gi|445774802|gb|EMA25816.1| DNA-directed RNA polymerase subunit E' [Haloarcula amylolytica JCM
13557]
Length = 192
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L + + PR+ VK+ L ++EG G V++V + IG G +
Sbjct: 1 MYKRVRLRDTVEVPPRFLAEVSPGLVKRLLQEKLEGRMDEDVGSVVSVIEVHDIGTGAVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y ++ A+ F P EV+D V +V G F IGP+ + H S +D
Sbjct: 61 PNKPGVYYEAEFDALTFDPQMQEVVDGEVVEVVNFGAFIGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + D +R +IV +D
Sbjct: 120 YDEENQQLASRESNRTLTVGDAVRARIVTKSID 152
>gi|296243100|ref|YP_003650587.1| DNA-directed RNA polymerase subunit E' [Thermosphaera aggregans DSM
11486]
gi|296095684|gb|ADG91635.1| DNA-directed RNA polymerase, subunit E' [Thermosphaera aggregans
DSM 11486]
Length = 192
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 11/119 (9%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTC-----------TGKYGFVIAVT 49
M+ I + + + P FG L E ++L + EG+ + ++ +
Sbjct: 1 MYNVIKVRDVVRIPPSKFGRPLEEVALEELREQYEGSVVILKNPFTSEEKKEPSIIVTIL 60
Query: 50 TIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFI 108
+ +G I PG G + V++ A+VF PF EV++ V V K G++ ++G L FI
Sbjct: 61 GLSIEPSGKIIPGDGATYHNVEFEALVFHPFLKEVVEGDVVTVTKNGLYVDLGVLDGFI 119
>gi|256088619|ref|XP_002580426.1| DNA-directed rna polymerase III 25 kD polypeptide [Schistosoma
mansoni]
gi|238666000|emb|CAZ36665.1| DNA-directed rna polymerase III 25 kD polypeptide, putative
[Schistosoma mansoni]
Length = 205
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 5/143 (3%)
Query: 11 ILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPV 70
+++ P Y + E ++Q+L S K G I++ I + I G V
Sbjct: 4 VVIKPNYICSDMKEIMEQELNSRFCSKVIYKVGLCISLWDILKVEESFISDVDGAYYTTV 63
Query: 71 KYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQFCPNSNPVCYK 129
+R + FRPF E+L +V ++K G+ + FI + + ++ N ++
Sbjct: 64 SFRIVCFRPFIDEILIGIVKSLSKAGLRVSLNFFDDVFIPAEKLRSPSRYDYEQNAWIWE 123
Query: 130 SVH----GEVVIQEDDEIRLKIV 148
+ E+ I + D IR ++V
Sbjct: 124 YAYEGETAELRIDKHDTIRFRVV 146
>gi|18976628|ref|NP_577985.1| DNA-directed RNA polymerase subunit E' [Pyrococcus furiosus DSM
3638]
gi|397650754|ref|YP_006491335.1| DNA-directed RNA polymerase subunit E' [Pyrococcus furiosus COM1]
gi|18892197|gb|AAL80380.1| DNA-directed RNA polymerase, subunit e' [Pyrococcus furiosus DSM
3638]
gi|393188345|gb|AFN03043.1| DNA-directed RNA polymerase subunit E' [Pyrococcus furiosus COM1]
Length = 189
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ ++++ + + P F E K L EGT G ++++ + I G+I
Sbjct: 1 MYKIVTVKDVVRIPPTMFTMDPKEAAKIILRETYEGTYDKDEGVILSILEVKDIKDGIII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
PG G + V + +V+ P EV++ V V G F IGP+ + + D
Sbjct: 61 PGDGATYHEVVFDVLVWEPKIHEVVEGYVADVMPFGAFIRIGPIDGLVHISQLMDD 116
>gi|448353799|ref|ZP_21542572.1| DNA-directed RNA polymerase subunit E' [Natrialba hulunbeirensis
JCM 10989]
gi|445639650|gb|ELY92753.1| DNA-directed RNA polymerase subunit E' [Natrialba hulunbeirensis
JCM 10989]
Length = 189
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L+ + + P G VK+ L ++EG + G +++VT + IG G +
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSPTLVKRLLQDKLEGRMDEEVGSIVSVTKVRDIGDGTVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y + A+ F P EV+D V +V + G F IGP+ + H S ++
Sbjct: 61 PNRPGVYYEADFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLL-HVSQISNEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
++ S + D IR +IV +D
Sbjct: 120 FDAENQQLASNESNRTLGVGDSIRARIVTKSID 152
>gi|159469412|ref|XP_001692857.1| DNA-directed RNA polymerase II, 19 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158277659|gb|EDP03426.1| DNA-directed RNA polymerase II, 19 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 201
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 44/97 (45%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +E +I + P + V Q + G V+++ + +I G +
Sbjct: 1 MFIITQIEDQIRVQPADLTKAPLDAVTQVIEQRFVDKVIPNLGLVVSIYDVTNIEGGFVY 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
P G + V++R +VFRPF GE++ + ++ G+
Sbjct: 61 PNDGAAFFTVQFRLVVFRPFIGEIIVGKLKSCSREGL 97
>gi|297527594|ref|YP_003669618.1| DNA-directed RNA polymerase [Staphylothermus hellenicus DSM 12710]
gi|297256510|gb|ADI32719.1| DNA-directed RNA polymerase [Staphylothermus hellenicus DSM 12710]
Length = 185
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 63/149 (42%), Gaps = 4/149 (2%)
Query: 1 MFYHI-SLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLI 59
M Y + + + + P F L E ++L EG T G ++ V ++ G I
Sbjct: 1 MVYRLYRIRDVVRIPPEKFSKPLEEAAWEELRQTYEGMITKNLGIIVTVLDVNVDPQGKI 60
Query: 60 QPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQ 118
PG G + ++ + F PF EV++ + V G F ++G FI + I + +
Sbjct: 61 IPGDGATYHKAEFTVLAFYPFIKEVVEGRINTVLAHGAFVDLGASDGFIYINQISDEKID 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKI 147
+ P + + +++ D +R ++
Sbjct: 121 YDPTRPALILR--ESRRMLERGDAVRARV 147
>gi|302686598|ref|XP_003032979.1| hypothetical protein SCHCODRAFT_54037 [Schizophyllum commune H4-8]
gi|300106673|gb|EFI98076.1| hypothetical protein SCHCODRAFT_54037 [Schizophyllum commune H4-8]
Length = 228
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 15/171 (8%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ + +HP FG E + +L + G I V + G ++
Sbjct: 1 MFQLSIIKDTVPIHPSDFGVPAQEAIITELNKKYANRVLHNVGLGICVFDLSQASEGKVR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQF 119
G G + Y V +R +VFRPF EV+ V ++ G+ + +I +P F
Sbjct: 61 YGDGMLWYKVVFRLVVFRPFTSEVVLGKVKSSDEDGIRVSLNFFDDVYIPAMYLPQPSAF 120
Query: 120 CPNS-------NPVCYKSVHGEVVIQEDDEIRL-----KIVGTRVDASGIF 158
PN NP SVH V++ + R+ +++ RV+A +
Sbjct: 121 DPNERAHFWLPNPPENPSVH--VLLDTPTDTRMYIDAGEVIRMRVEADEFY 169
>gi|257053274|ref|YP_003131107.1| DNA-directed RNA polymerase subunit E' [Halorhabdus utahensis DSM
12940]
gi|256692037|gb|ACV12374.1| DNA-directed RNA polymerase [Halorhabdus utahensis DSM 12940]
Length = 189
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L + + P + VK+ L ++EG G V++VT + IG G +
Sbjct: 1 MYKRVRLRDTVEVPPEHLADVTPGLVKRLLQEKLEGRMDEDVGSVVSVTEVHDIGEGAVV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y ++ A+ F P EV+D V +V G F IGP+ + H S +D
Sbjct: 61 PNEPGVYYVAEFDALTFDPQMQEVVDGEVVEVVNFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + D +R +IV +D
Sbjct: 120 YDGENQQLASRDSNRTLTVGDSVRARIVTKSID 152
>gi|45185736|ref|NP_983452.1| ACR049Wp [Ashbya gossypii ATCC 10895]
gi|44981491|gb|AAS51276.1| ACR049Wp [Ashbya gossypii ATCC 10895]
gi|374106658|gb|AEY95567.1| FACR049Wp [Ashbya gossypii FDAG1]
Length = 210
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F + +L ++ G I + + ++ G ++
Sbjct: 1 MFILTKISDLVRIPPDQFHRDTASAINHQLNNKYANKIIPHVGLCITIYDLLTVDEGQLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQ-------VNKVGMFAEI 101
PG G V +RA+VF+PF GE++ +TQ V+ +GMF +I
Sbjct: 61 PGDGASFINVTFRALVFKPFVGEIITGWITQCTNEGIKVSLLGMFDDI 108
>gi|14591652|ref|NP_143736.1| DNA-directed RNA polymerase subunit E' [Pyrococcus horikoshii OT3]
gi|3258350|dbj|BAA31033.1| 188aa long hypothetical DNA-directed RNA polymerase subunit E
[Pyrococcus horikoshii OT3]
Length = 188
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ ++++ + + PR F E L EGT G ++++ + +G G+I
Sbjct: 1 MYKIVTVKDVVRIPPRMFTMDPKEAAMLVLRDTYEGTYDRDEGVILSIVEVKEVGDGIIV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFI 108
PG G + V + +V+ P + EV++ V V G F IGP+ +
Sbjct: 61 PGDGATYHEVVFDVLVWEPKRDEVVEGTVVDVVPFGAFIRIGPMDGLV 108
>gi|167042375|gb|ABZ07103.1| putative RNA polymerase Rpb7, N-terminal domain protein [uncultured
marine crenarchaeote HF4000_ANIW97M7]
Length = 213
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 46/116 (39%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +LE + + P FG L + L S+ E G++I + D G I
Sbjct: 1 MFSVSTLEDIVRIPPSLFGTSLNKAAMNILKSKYESMVKSDLGYIIMILDADVEPMGKII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
G G + V + A+ F P E++ + + G F IGP + + D
Sbjct: 61 AGDGATFHRVTFDALTFYPKLQEIIYGELVDITDFGAFVRIGPTDALLHLSQVMDD 116
>gi|402074868|gb|EJT70339.1| DNA-directed RNA polymerase III polypeptide [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 209
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F + ++ L + K G I V + GLI
Sbjct: 1 MFILTKIADLVQIKPAQFAKLSIDAIEDNLNEKYCNKVIQKLGLCICVYDLLWASEGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
G G V V+ R +VFRPFKGEVL A +++ K G+
Sbjct: 61 HGTGVVNVNVECRLVVFRPFKGEVLFARISRCVKDGI 97
>gi|260824541|ref|XP_002607226.1| hypothetical protein BRAFLDRAFT_104488 [Branchiostoma floridae]
gi|229292572|gb|EEN63236.1| hypothetical protein BRAFLDRAFT_104488 [Branchiostoma floridae]
Length = 203
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 13/157 (8%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L + V ++L ++ G IA+ I + I
Sbjct: 1 MFTLVEMTDTVRIPPHIFHIKLNDAVIEELNNKFANKVVYNVGLCIALFDITKLEDSFIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G V +R +VFRPF E+L + ++ G+ +G F IP D
Sbjct: 61 PGDGASHTRVHFRYVVFRPFMDEILQGRIRSCSREGVHVSLG----FFDDILIPPDALQQ 116
Query: 121 PN----SNPVC---YKSVHG--EVVIQEDDEIRLKIV 148
P+ S V Y++ G ++ + ++EIR ++V
Sbjct: 117 PSKFDESEQVWVWEYETEEGTHDLFMDINEEIRFRVV 153
>gi|343429728|emb|CBQ73300.1| related to RPC25-DNA-direcred RNA polymerase III, 25 KD subunit
[Sporisorium reilianum SRZ2]
Length = 244
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ I +HP FG ++ ++ + G I++ I S G ++
Sbjct: 1 MFVLADIQDTISVHPSAFGQPSLTSISDQINVKYANKILVDVGLCISLFDILSCSEGKVR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQF 119
G G + + V +R IVFRPF EVL + ++ G+ +G ++ H IP F
Sbjct: 61 FGDGCLYHHVTFRLIVFRPFTQEVLTGKIKSSDEAGIRITLGFFDDIYVPFHLIPKPCAF 120
>gi|328872887|gb|EGG21254.1| hypothetical protein DFA_01132 [Dictyostelium fasciculatum]
Length = 1058
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKY----GFVIAVTTIDSIGA 56
MF+ I++E ++ + P F +L Q + E+E T K G IA+ I G
Sbjct: 794 MFHLITIEDKVRIPPSAFENEL-----QTIEDEIEKKYTNKILINGGLFIALYDILGTGD 848
Query: 57 GLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
I G G V+ R +VF+PF GE+L+ V+ + K + +G
Sbjct: 849 AYIYSGDGGSHLIVRCRLVVFKPFVGEILEGVIKKTTKDYIIVSLG 894
>gi|367007176|ref|XP_003688318.1| hypothetical protein TPHA_0N01030 [Tetrapisispora phaffii CBS 4417]
gi|357526626|emb|CCE65884.1| hypothetical protein TPHA_0N01030 [Tetrapisispora phaffii CBS 4417]
Length = 205
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 13/141 (9%)
Query: 15 PRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRA 74
P F + +L + G +AV + + G ++PG G V++RA
Sbjct: 15 PEQFNLDNVTAITHQLNGKYANKIIAHLGLCVAVYDVLEVDEGQLRPGDGSSYINVRFRA 74
Query: 75 IVFRPFKGEVLDAVVT-------QVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVC 127
++F+PF GE++ +T +V+ GMF +I FI + + F N N
Sbjct: 75 LIFKPFIGEIVTGWITKCTVDGIKVSLSGMFEDI-----FIPKNMLFEGCHFSVNENAWV 129
Query: 128 Y-KSVHGEVVIQEDDEIRLKI 147
+ E+ +++IR ++
Sbjct: 130 WPMDEDTELYFDINEKIRFRV 150
>gi|323462792|pdb|2Y0S|E Chain E, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|323462807|pdb|2Y0S|T Chain T, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|400260746|pdb|4AYB|E Chain E, Rnap At 3.2ang
gi|400260763|pdb|4B1O|E Chain E, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|400260782|pdb|4B1P|T Chain T, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|219814437|gb|ACL36492.1| RNA polymerase subunit 7 [Sulfolobus shibatae B12]
Length = 180
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 1/156 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ I + + P FG L E +L + + G V+A+ + + G++
Sbjct: 1 MYKLIKARSIVRIPPNEFGKPLNEIALNELRQQYQEKILKDLGLVLAILNVKTSEEGMLV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + V++ I + P EV++ V QV+ G+F +GP+ + I D
Sbjct: 61 FGDGATYHEVEFDMITYVPVVQEVVEGEVLQVDNYGVFVNLGPMDGLVHISQITDDTLKY 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASG 156
N + + + VIQ+ D++R +++ +G
Sbjct: 121 DNVRGIIFGE-KSKKVIQKGDKVRARVISVASTVTG 155
>gi|15897347|ref|NP_341952.1| DNA-directed RNA polymerase subunit E' [Sulfolobus solfataricus P2]
gi|284173313|ref|ZP_06387282.1| DNA-directed RNA polymerase subunit E' [Sulfolobus solfataricus
98/2]
gi|384433868|ref|YP_005643226.1| DNA-directed RNA polymerase [Sulfolobus solfataricus 98/2]
gi|167744885|pdb|2PMZ|E Chain E, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|167744896|pdb|2PMZ|T Chain T, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|239782147|pdb|3HKZ|E Chain E, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|239782160|pdb|3HKZ|Q Chain Q, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|13813566|gb|AAK40742.1| DNA-directed RNA polymerase, subunit E' (rpoE1) [Sulfolobus
solfataricus P2]
gi|261602022|gb|ACX91625.1| DNA-directed RNA polymerase [Sulfolobus solfataricus 98/2]
Length = 180
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 1/156 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ I + + P FG L E +L + + G V+A+ + + G++
Sbjct: 1 MYKLIKARSIVRIPPNEFGKPLNEIALNELRQQYQEKILKDLGLVLAILNVKTSEEGILV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + V++ I + P EV++ V QV+ G+F +GP+ + I D
Sbjct: 61 FGDGATYHEVEFDMITYVPVVQEVVEGEVLQVDNYGIFVNLGPMDGLVHISQITDDTLKY 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASG 156
N + + + VIQ+ D++R +++ +G
Sbjct: 121 DNVRGIIFGE-KSKKVIQKGDKVRARVISVASTVTG 155
>gi|315425802|dbj|BAJ47456.1| DNA-directed RNA polymerase subunit E' [Candidatus Caldiarchaeum
subterraneum]
gi|315425826|dbj|BAJ47479.1| DNA-directed RNA polymerase subunit E' [Candidatus Caldiarchaeum
subterraneum]
gi|315427684|dbj|BAJ49280.1| DNA-directed RNA polymerase subunit E' [Candidatus Caldiarchaeum
subterraneum]
gi|343484641|dbj|BAJ50295.1| DNA-directed RNA polymerase subunit E' [Candidatus Caldiarchaeum
subterraneum]
Length = 187
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 53/141 (37%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P FG L + V +L EG + G++I V G I
Sbjct: 1 MFMLVEVSEIVGIPPADFGKPLEKVVLNELRKRYEGAVDEELGYIIMVIDAKVDKVGRIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P G + + + + P EV+ V ++ G F IGP+ I I D
Sbjct: 61 PRDGSTYHRSTFTLLTYMPLLNEVVLGEVVEITDFGCFVRIGPIDGLIHISQIMDDYITY 120
Query: 121 PNSNPVCYKSVHGEVVIQEDD 141
N + G ++ DD
Sbjct: 121 DEKNNMLVGRKSGRKLLVGDD 141
>gi|195326872|ref|XP_002030149.1| GM25288 [Drosophila sechellia]
gi|195589569|ref|XP_002084524.1| GD14319 [Drosophila simulans]
gi|194119092|gb|EDW41135.1| GM25288 [Drosophila sechellia]
gi|194196533|gb|EDX10109.1| GD14319 [Drosophila simulans]
Length = 240
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L+ + + P F +L + V+ ++ ++ G IA+ I S+ +I
Sbjct: 1 MFVLAELKDNVRIAPDQFNLKLVDAVRDEIDRKLANKVLLNVGLCIALKDIVSLKDSIIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VFRP G V+ + ++ G+ +G
Sbjct: 61 PGDGASHTEVLFRYVVFRPMVGTVITGKIRNCSREGVHVTLG 102
>gi|237823484|pdb|2WAQ|E Chain E, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823494|pdb|2WB1|E Chain E, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823509|pdb|2WB1|T Chain T, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
Length = 180
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 1/156 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ I + + P FG L E +L + + G V+A+ + + G++
Sbjct: 1 MYKLIKARSIVRIPPNEFGKPLNEIALNELRQQYQEKILKDLGLVLAILNVKTSEEGILV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + V++ I + P EV++ V QV+ G+F +GP+ + I D
Sbjct: 61 FGDGATYHEVEFDMITYVPVVQEVVEGEVLQVDNYGIFVNLGPMDGLVHISQITDDTLKY 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASG 156
N + + + VIQ+ D++R +++ +G
Sbjct: 121 DNVRGIIFGE-KSKKVIQKGDKVRARVISVASTVTG 155
>gi|227827957|ref|YP_002829737.1| DNA-directed RNA polymerase subunit E' [Sulfolobus islandicus
M.14.25]
gi|227830679|ref|YP_002832459.1| DNA-directed RNA polymerase subunit E' [Sulfolobus islandicus
L.S.2.15]
gi|229579586|ref|YP_002837985.1| DNA-directed RNA polymerase subunit E' [Sulfolobus islandicus
Y.G.57.14]
gi|229581749|ref|YP_002840148.1| DNA-directed RNA polymerase subunit E' [Sulfolobus islandicus
Y.N.15.51]
gi|229585224|ref|YP_002843726.1| DNA-directed RNA polymerase subunit E' [Sulfolobus islandicus
M.16.27]
gi|238620183|ref|YP_002915009.1| DNA-directed RNA polymerase subunit E' [Sulfolobus islandicus
M.16.4]
gi|284998206|ref|YP_003419973.1| DNA-directed RNA polymerase [Sulfolobus islandicus L.D.8.5]
gi|385773661|ref|YP_005646227.1| DNA-directed RNA polymerase [Sulfolobus islandicus HVE10/4]
gi|227457127|gb|ACP35814.1| DNA-directed RNA polymerase [Sulfolobus islandicus L.S.2.15]
gi|227459753|gb|ACP38439.1| DNA-directed RNA polymerase [Sulfolobus islandicus M.14.25]
gi|228010301|gb|ACP46063.1| DNA-directed RNA polymerase [Sulfolobus islandicus Y.G.57.14]
gi|228012465|gb|ACP48226.1| DNA-directed RNA polymerase [Sulfolobus islandicus Y.N.15.51]
gi|228020274|gb|ACP55681.1| DNA-directed RNA polymerase [Sulfolobus islandicus M.16.27]
gi|238381253|gb|ACR42341.1| DNA-directed RNA polymerase [Sulfolobus islandicus M.16.4]
gi|284446101|gb|ADB87603.1| DNA-directed RNA polymerase [Sulfolobus islandicus L.D.8.5]
gi|323477775|gb|ADX83013.1| DNA-directed RNA polymerase [Sulfolobus islandicus HVE10/4]
Length = 180
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 1/156 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ I + + P FG L E +L + + G V+A+ + + G++
Sbjct: 1 MYKLIKARSIVRIPPNEFGKPLNEIALNELRQQYQEKILKDLGLVLAILNVKTSEEGILV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + V++ I + P EV++ V QV+ G+F +GP+ + I D
Sbjct: 61 FGDGATYHEVEFDMITYVPVVQEVVEGEVLQVDNYGVFVNLGPMDGLVHISQITDDTLKY 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASG 156
N + + + VIQ+ D++R +++ +G
Sbjct: 121 DNVRGIIFGE-KSKKVIQKGDKVRARVISVASTVTG 155
>gi|339238867|ref|XP_003380988.1| DNA-directed RNA polymerase III subunit polypeptide [Trichinella
spiralis]
gi|316976048|gb|EFV59393.1| DNA-directed RNA polymerase III subunit polypeptide [Trichinella
spiralis]
Length = 202
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 62/152 (40%), Gaps = 10/152 (6%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF I + P FG + + +++K+ YG + V +I+ IG +
Sbjct: 13 MFKLCKFRQIIRIPPHRFGEDVVKYLERKIGEMFINKVILNYGLGVCVHSIEEIGDSITL 72
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G V + IVF P GEVL +++ + G+ FI +P +F
Sbjct: 73 PGDGGAHTEVTWNMIVFHPNIGEVLKGEISKCDSTGV------SDIFIPREYLPQPSKFL 126
Query: 121 PNSNPVCYK----SVHGEVVIQEDDEIRLKIV 148
N ++ E+ ++ ++R +++
Sbjct: 127 QNEQIWSWQYEVDDGFAELFLEPGSKVRFRVI 158
>gi|302902820|ref|XP_003048726.1| hypothetical protein NECHADRAFT_95472 [Nectria haematococca mpVI
77-13-4]
gi|256729660|gb|EEU43013.1| hypothetical protein NECHADRAFT_95472 [Nectria haematococca mpVI
77-13-4]
Length = 199
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 17/153 (11%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F + E ++ + ++ K G I + + GLI
Sbjct: 1 MFILTKIADLVQIAPADFSKRSKEAIEDNINAKYSNKVIQKIGLCICLYDLQWASEGLIG 60
Query: 61 PGQGFVVYP-------VKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLS-CFISHHS 112
G G V V++R +VFRPFKGEV+ A ++ G++ + + F+S+
Sbjct: 61 HGTGLVNVNADQAQSLVEFRMVVFRPFKGEVMMARISTSTPEGIYLQTDFFADIFVSYEY 120
Query: 113 IPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRL 145
+P +F + H V D+E RL
Sbjct: 121 LPPGAEFSHS---------HQLWVWNVDEEQRL 144
>gi|169784414|ref|XP_001826668.1| DNA-directed RNA polymerase III subunit RPC8 [Aspergillus oryzae
RIB40]
gi|238508450|ref|XP_002385418.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Aspergillus flavus NRRL3357]
gi|83775415|dbj|BAE65535.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220688937|gb|EED45289.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Aspergillus flavus NRRL3357]
gi|391864250|gb|EIT73546.1| DNA-directed RNA polymerase subunit E' [Aspergillus oryzae 3.042]
Length = 193
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 42/97 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +L I + P F ++ + + K G I + GLI
Sbjct: 1 MFILTTLSDLIQISPEDFSKYSSVAIEDNINEKYANKVIQKVGLCIGFYDLLESSDGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
G G V VK+R IVFRPFKGE++ ++ + G+
Sbjct: 61 HGTGLVNVNVKFRLIVFRPFKGEIMLGKISSATEHGI 97
>gi|195018138|ref|XP_001984729.1| GH14863 [Drosophila grimshawi]
gi|193898211|gb|EDV97077.1| GH14863 [Drosophila grimshawi]
Length = 246
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L+ + + P F +L + V+ ++ ++ G IA+ I S+ +I
Sbjct: 1 MFVLAELKDNVRIAPDQFNLKLVDAVRDEIDRKLANKVLLNVGLCIALKEIVSLKDSIIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VFRP G V+ + ++ G+ +G
Sbjct: 61 PGDGASHTEVLFRYVVFRPMVGTVMTGKIRTCSREGVHVTLG 102
>gi|50309129|ref|XP_454570.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643705|emb|CAG99657.1| KLLA0E13751p [Kluyveromyces lactis]
Length = 210
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 21/152 (13%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F T+ +L ++ G + V + + G ++
Sbjct: 1 MFILTKVADLVRIPPDQFKRDTISTIVHELNTKYANKIIPHIGLCVTVYDVLDVDEGQLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQ-------VNKVGMFAEIGPLSCFISHHSI 113
PG G V +RA+VF+PF GE++ ++Q V+ +G+F +I F+ + +
Sbjct: 61 PGDGAAFINVTFRALVFKPFVGEIVTGWISQCTTEGIKVSLLGLFEDI-----FVPQNML 115
Query: 114 PTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRL 145
F P N + DDE +L
Sbjct: 116 FEGSYFSPKENAWIWPM---------DDETKL 138
>gi|440632844|gb|ELR02763.1| hypothetical protein GMDG_05707 [Geomyces destructans 20631-21]
Length = 207
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 1/133 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F + ++ + ++ K G I + + S GLI
Sbjct: 1 MFILTKISDLVQITPEDFSKPSKQAIEDNINAKYANKVIQKIGLCICLYDLLSSSEGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLS-CFISHHSIPTDMQF 119
G G V V++R +VFRPF+ EVL +T + G+ S F+ S+P F
Sbjct: 61 HGTGLVNVNVEFRLVVFRPFRHEVLHGRITSASPEGIHLRTTFFSDIFVPATSLPAGTFF 120
Query: 120 CPNSNPVCYKSVH 132
+ Y+ H
Sbjct: 121 DHSQGVFIYRHPH 133
>gi|326428134|gb|EGD73704.1| hypothetical protein PTSG_05411 [Salpingoeca sp. ATCC 50818]
Length = 203
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF I ++ I L P+ F E + ++ K G I + + IG G I
Sbjct: 1 MFCVIEIKDVIRLKPKRFATDRNEALAFEINKMFTNKVIHKRGLGICLFDLLDIGDGEIH 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNK 94
P G V +R ++FRPF GEVL + ++
Sbjct: 61 PSDGAAHVHVTFRLLMFRPFVGEVLKGTIRSCSR 94
>gi|332376875|gb|AEE63577.1| unknown [Dendroctonus ponderosae]
Length = 215
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 14/165 (8%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + +++ + P +F +L V+ +L ++ G IA+ I S+ I
Sbjct: 15 MFILVEMKNITRILPEHFHIKLNNAVEIELNKKLANKVVLNVGLCIALFDITSLKESFII 74
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSI-PTDMQF 119
PG G V +R +VFRPF E+L + ++ G+ +G F I P +Q+
Sbjct: 75 PGDGASHTIVHFRYVVFRPFMEEILVGKIRSCSQEGVHVTLG----FFDDILIPPIALQY 130
Query: 120 CPNSNPVCYKSVHG---------EVVIQEDDEIRLKIVGTRVDAS 155
N V ++ I D IR ++ G R + +
Sbjct: 131 PSKFNETEQAWVWEYDVGDGSKHDLFIDAGDSIRFRVTGERFEET 175
>gi|289742667|gb|ADD20081.1| DNA-directed RNA polymerase subunit E' [Glossina morsitans
morsitans]
Length = 246
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L+ + + P F +L E V+ ++ ++ G IA+ + S+ I
Sbjct: 1 MFVLAELKDTVRISPDQFNLKLLEAVRDEINRKLANKVLLNVGLCIALKDVVSLKDSFIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R IVFRP G VL + + G+ +G
Sbjct: 61 PGDGASHTEVVFRYIVFRPPVGNVLTGKIRSCSHEGVHVTLG 102
>gi|225711736|gb|ACO11714.1| DNA-directed RNA polymerase III subunit RPC8 [Caligus
rogercresseyi]
Length = 217
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%)
Query: 17 YFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIV 76
+ G L E + +++ ++ G + + I IG + PG G V +R +V
Sbjct: 17 HLGRNLPEALSEEINRKLSNRVVHNVGLAVCLFDILEIGESFLSPGDGASHTRVNFRILV 76
Query: 77 FRPFKGEVLDAVVTQVNKVGMFAEIG 102
FRPF EV++ + +K G+ +G
Sbjct: 77 FRPFMEEVINGKIKSCSKDGVQVSLG 102
>gi|195379674|ref|XP_002048603.1| GJ14059 [Drosophila virilis]
gi|194155761|gb|EDW70945.1| GJ14059 [Drosophila virilis]
Length = 246
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L+ + + P +F +L + V+ ++ ++ G IA+ I S+ +I
Sbjct: 1 MFVLAELKDNVRIAPDHFNLKLVDAVRDEIDRKLANKVLLNVGLCIALKEIVSLKDSIIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VFRP G V+ + + G+ +G
Sbjct: 61 PGDGASHTEVLFRYVVFRPMVGTVITGKIRSCCREGVNVTLG 102
>gi|428178891|gb|EKX47764.1| DNA-directed RNA polymerase III subunit RPC25 [Guillardia theta
CCMP2712]
Length = 187
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 12/140 (8%)
Query: 43 GFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
G + + I+ +G GLI P V V + +VFRPF GEV+ + + G++ +G
Sbjct: 43 GLCVCLYEIEELGEGLIYPSDSAVHVRVTFSLVVFRPFIGEVITGSIHRSTPEGLWISLG 102
Query: 103 PL-SCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVI-----------QEDDEIRLKIVGT 150
F+ H + ++ +KS HG+ ++ +++ R
Sbjct: 103 FFQDIFVPPHFMQDGSEWDEEHQLWVWKSEHGDAMLDPAFGSPRFVDRKNTPARTGQEQE 162
Query: 151 RVDASGIFAIGTLMDDYLGL 170
+ D + ++ DD LGL
Sbjct: 163 QEDEPAFQVMASIKDDGLGL 182
>gi|393236166|gb|EJD43716.1| hypothetical protein AURDEDRAFT_145291 [Auricularia delicata
TFB-10046 SS5]
Length = 223
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 3/139 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ I L P F + +K +L + G + V + G G ++
Sbjct: 1 MFQLAIIKDTIPLLPATFSIPAEQALKFELNKKYANRVLHDVGLCVCVFDLIHAGEGKVR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQF 119
G G + + V +R +VFRPFK EVL A V ++ G+ + FI +P F
Sbjct: 61 YGDGCLWHKVTFRLVVFRPFKSEVLLATVQSSSEDGIRLSVEFFDDMFIPLEYLPYPSAF 120
Query: 120 CPNSNPVCYKSVHGEVVIQ 138
PN C+ V + I+
Sbjct: 121 DPNER--CFFWVPSQAEIE 137
>gi|254577683|ref|XP_002494828.1| ZYRO0A10582p [Zygosaccharomyces rouxii]
gi|238937717|emb|CAR25895.1| ZYRO0A10582p [Zygosaccharomyces rouxii]
Length = 209
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 66/155 (42%), Gaps = 13/155 (8%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F ++ +L + G I V I + G ++
Sbjct: 1 MFTLSKISELVRIPPDQFHRDTISSITHELNNAYANKVIPHIGLCITVYDILEVDEGQLR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVT-------QVNKVGMFAEIGPLSCFISHHSI 113
PG G V +RA+VF+PF GEV+ ++ +V+ +G+F +I FI + +
Sbjct: 61 PGDGASYINVTFRALVFKPFVGEVITGWISKCTAEGIKVSLLGLFNDI-----FIPQNML 115
Query: 114 PTDMQFCPNSNPVCYK-SVHGEVVIQEDDEIRLKI 147
+ P+ N + ++ +++IR ++
Sbjct: 116 FEGCSYSPDENAWIWPMDESNQLYFDVNEKIRFRV 150
>gi|195440052|ref|XP_002067873.1| GK12491 [Drosophila willistoni]
gi|194163958|gb|EDW78859.1| GK12491 [Drosophila willistoni]
Length = 245
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L+ + + P +F +L + V+ ++ ++ G IA+ I S+ I
Sbjct: 1 MFVLAELKDNVRIAPDHFNLKLIDAVRDEIDRKLANKVLLNVGLCIALKEIVSLKDSTIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VFRP G ++ + ++ G+ +G
Sbjct: 61 PGDGASHTEVLFRYVVFRPRLGTIMTGKIRNCSREGVHVTLG 102
>gi|195493530|ref|XP_002094458.1| GE21834 [Drosophila yakuba]
gi|194180559|gb|EDW94170.1| GE21834 [Drosophila yakuba]
Length = 240
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L+ + + P F +L + V+ ++ ++ G IA+ I S+ +I
Sbjct: 1 MFVLAELKDNVRIAPDQFHLKLVDAVRDEIDRKLANKVLLNVGLCIALKDIVSLKDSIIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VFRP G V+ + ++ G+ +G
Sbjct: 61 PGDGASHTEVLFRYVVFRPMVGTVITGKIRNCSREGVHVTLG 102
>gi|194869246|ref|XP_001972417.1| GG15519 [Drosophila erecta]
gi|190654200|gb|EDV51443.1| GG15519 [Drosophila erecta]
Length = 240
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L+ + + P F +L + V+ ++ ++ G IA+ I S+ +I
Sbjct: 1 MFVLAELKDNVRIAPDQFHLKLVDAVRDEIDRKLANKVLLNVGLCIALKDIVSLKDSIIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VFRP G V+ + ++ G+ +G
Sbjct: 61 PGDGASHTEVLFRYVVFRPMVGTVITGKIRNCSREGVHVTLG 102
>gi|24662815|ref|NP_648490.1| CG7339, isoform A [Drosophila melanogaster]
gi|442631740|ref|NP_001261720.1| CG7339, isoform B [Drosophila melanogaster]
gi|7294695|gb|AAF50032.1| CG7339, isoform A [Drosophila melanogaster]
gi|21428376|gb|AAM49848.1| GM16372p [Drosophila melanogaster]
gi|220949964|gb|ACL87525.1| CG7339-PA [synthetic construct]
gi|220959072|gb|ACL92079.1| CG7339-PA [synthetic construct]
gi|440215643|gb|AGB94414.1| CG7339, isoform B [Drosophila melanogaster]
Length = 240
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L+ + + P F +L + V+ ++ ++ G IA+ I S+ +I
Sbjct: 1 MFVLAELKDNVRIAPDQFHLKLVDAVRDEIDRKLANKVLLNVGLCIALKDIVSLKDSIIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VFRP G V+ + ++ G+ +G
Sbjct: 61 PGDGASHTEVLFRYVVFRPMVGTVITGKIRNCSREGVHVTLG 102
>gi|326477107|gb|EGE01117.1| DNA-directed RNA polymerase III polypeptide [Trichophyton equinum
CBS 127.97]
Length = 195
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 42/97 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ + + P F ++ + + G IA + GLI
Sbjct: 1 MFILTTISDLVQISPEDFSKLSAVAIEDNINEKYANKVIQNVGLCIAFYDLLESSDGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
G G V VK+R IVFRPFKGEV+ +T + G+
Sbjct: 61 HGTGLVNVNVKFRMIVFRPFKGEVIIGKITNGTEQGI 97
>gi|346321249|gb|EGX90849.1| DNA-directed RNA polymerase III, putative [Cordyceps militaris
CM01]
Length = 192
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F + ++ + ++ K G I + I GLI
Sbjct: 1 MFILTKISDLVQIAPEDFSKRSIIAIEDNINAKYSNKVIQKIGLCICLYDILWTSEGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVL 85
G G V ++R IVFRPFKGEVL
Sbjct: 61 NGTGLVNVNAEFRMIVFRPFKGEVL 85
>gi|443898780|dbj|GAC76114.1| DNA-directed RNA polymerase subunit E' [Pseudozyma antarctica T-34]
Length = 326
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +E I +HP FG ++ ++ + G +++ I S G ++
Sbjct: 85 MFVLADIEDTISVHPSAFGQPSLTSISDQINIKYANKILPDVGLCVSLFDILSCSEGKVR 144
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQF 119
G G + + V +R +VFRPF EVL + ++ G+ +G ++ H IP F
Sbjct: 145 FGDGCLYHHVTFRLVVFRPFTQEVLTGKIKSSDEAGIRITMGFFDDIYVPAHLIPKPCAF 204
>gi|408394367|gb|EKJ73575.1| hypothetical protein FPSE_06193 [Fusarium pseudograminearum
CS3096]
Length = 193
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F + + ++ + ++ K G I + + GLI
Sbjct: 1 MFILTKIADLVQIAPEDFSKRSIDAIEDNINAKYSNKVIQKIGLCICLYDLHWASEGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVL 85
G G V ++R +VFRPFKGEV+
Sbjct: 61 HGTGLVNVNAEFRMVVFRPFKGEVM 85
>gi|126465733|ref|YP_001040842.1| DNA-directed RNA polymerase subunit E' [Staphylothermus marinus F1]
gi|126014556|gb|ABN69934.1| DNA-directed RNA polymerase, subunit E' [Staphylothermus marinus
F1]
Length = 185
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 58/138 (42%), Gaps = 3/138 (2%)
Query: 11 ILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPV 70
+ + P F L E ++L EG T G ++ V + G + PG G +
Sbjct: 12 VRIPPEKFNKPLEEAAWEELRQSYEGMITKNLGIIVTVLDVKVDPQGKVIPGDGATYHKA 71
Query: 71 KYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQFCPNSNPVCYK 129
++ + F PF EV++ + V G F ++G FI + I + + + P + +
Sbjct: 72 EFTVLAFYPFIKEVVEGRINTVLAHGAFVDLGASDGFIYINQISDEKIDYDPTRPALILR 131
Query: 130 SVHGEVVIQEDDEIRLKI 147
+++ D +R ++
Sbjct: 132 --ESRRMLERGDAVRARV 147
>gi|397774282|ref|YP_006541828.1| DNA-directed RNA polymerase [Natrinema sp. J7-2]
gi|397683375|gb|AFO57752.1| DNA-directed RNA polymerase [Natrinema sp. J7-2]
Length = 179
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Query: 15 PRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRA 74
P G + VK+ L ++EG + G V++VT + IG G + P + V Y ++ A
Sbjct: 5 PEELGDVSPDRVKRLLQDKLEGRMDEEVGSVVSVTEVHDIGEGTVLPNRPGVYYEAEFDA 64
Query: 75 IVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGE 134
+ F P EV+D V +V + G F IGP+ + H S +D + S
Sbjct: 65 VTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLL-HVSQISDEYLAFDGENQQLASNESA 123
Query: 135 VVIQEDDEIRLKIVGTRVD 153
+ +D +R +IV +D
Sbjct: 124 RSLGVEDAVRARIVTKSID 142
>gi|335440067|ref|ZP_08561790.1| DNA-directed RNA polymerase subunit E [Halorhabdus tiamatea SARL4B]
gi|334889091|gb|EGM27384.1| DNA-directed RNA polymerase subunit E [Halorhabdus tiamatea SARL4B]
Length = 189
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 1/153 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + L + + P + VK+ L ++EG G +++VT + IG G +
Sbjct: 1 MYKRVRLRDTVEVPPEHLADVTPGLVKRLLQDKLEGQMDEDVGSIVSVTEVHDIGEGAVV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
P + V Y ++ A+ + P EV+D V +V G F IGP+ + H S +D
Sbjct: 61 PNEPGVYYVAEFDALTYDPQMQEVVDGEVVEVVNFGAFVGIGPVDGLL-HVSQISDEYLA 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD 153
+ S + D +R +IV +D
Sbjct: 120 YDGENQQLASRDSNRTLTVGDSVRARIVTKSID 152
>gi|333987965|ref|YP_004520572.1| DNA-directed RNA polymerase [Methanobacterium sp. SWAN-1]
gi|333826109|gb|AEG18771.1| DNA-directed RNA polymerase [Methanobacterium sp. SWAN-1]
Length = 197
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 1/148 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ +E + + P F L + + L GT K G ++ V I+ IG G +
Sbjct: 1 MYLISKIEDTVRIPPSRFEEPLNDVAVELLNESYVGTVDKKLGLMVTVKEIEDIGVGNVI 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + V + A+ F+P E+++ V ++ + G F +GP+ + H S TD
Sbjct: 61 MGDGAAYHDVVFTALSFKPELHEIIEGEVIEITEFGAFVRMGPMDGLV-HVSQVTDDYIN 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIV 148
+ + ++E D++R +IV
Sbjct: 120 YDGKRGALLGKESKKSLEEGDKVRARIV 147
>gi|310793419|gb|EFQ28880.1| RNA polymerase III subunit Rpc25 [Glomerella graminicola M1.001]
Length = 197
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 64/150 (42%), Gaps = 3/150 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F + ++ + ++ K G I + + GLI
Sbjct: 1 MFILTKIADLVEIAPEDFRKKSVTAIEDNINAKYANKVIQKIGLCICLYDLLWTSEGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQF 119
G G V V++R IVFRPFKGEV+ + G+ FI +P +F
Sbjct: 61 HGTGLVNVNVEFRLIVFRPFKGEVMFGRIRSSTPAGINLRTDFFDDIFIPFDELPEGAEF 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDE-IRLKIV 148
+S + ++ G+ + ++ E +R +++
Sbjct: 121 N-HSEQLWIWNIEGDRLFYDNHEMVRFQVI 149
>gi|409081111|gb|EKM81470.1| hypothetical protein AGABI1DRAFT_35937 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426196321|gb|EKV46249.1| hypothetical protein AGABI2DRAFT_70931 [Agaricus bisporus var.
bisporus H97]
Length = 227
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ + + P FG E + +L + G I V + +G G ++
Sbjct: 1 MFSLSIIKDTVAVQPSQFGVPADEAITAELNKKYANRVLHDVGLCICVFDLTQVGEGKVR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPT 115
G G + Y +R ++FRPF EV+ A V ++ G+ +G F IPT
Sbjct: 61 YGDGCLWYKTVFRMVIFRPFISEVVIAKVKSSDEDGIRLTMG----FFDDIYIPT 111
>gi|374633213|ref|ZP_09705580.1| DNA-directed RNA polymerase subunit E' [Metallosphaera
yellowstonensis MK1]
gi|373524697|gb|EHP69574.1| DNA-directed RNA polymerase subunit E' [Metallosphaera
yellowstonensis MK1]
Length = 176
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 64/155 (41%), Gaps = 1/155 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P FG L L +E + G V+ VT G+I
Sbjct: 1 MFKLVRARGVVRIPPDQFGGPLDVIALDILKNEYQERLFKDLGLVLTVTKAKVSEEGMIV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + V++ + F P EV++ +TQV+ G++ +GP+ + H S D +
Sbjct: 61 FGDGATYHEVEFELLTFSPIIQEVIEGDITQVDNYGVYVNMGPMDGLV-HVSQIGDDNYR 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDAS 155
+ + V Q+ D +R +I+ AS
Sbjct: 120 FDQIRGTLVGERSKKVFQKGDFVRARIMTISTAAS 154
>gi|302667367|ref|XP_003025270.1| hypothetical protein TRV_00586 [Trichophyton verrucosum HKI 0517]
gi|291189368|gb|EFE44659.1| hypothetical protein TRV_00586 [Trichophyton verrucosum HKI 0517]
Length = 253
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 43 GFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
G IA + GLI G G V VK+R IVFRPFKGEV+ + K+ E G
Sbjct: 55 GLCIAFYDLLESSDGLIGHGTGLVNVNVKFRIIVFRPFKGEVI------IGKITNGTEQG 108
Query: 103 PLSCFISHHSIPTDM 117
S +H I +D+
Sbjct: 109 IKSTGTAHFDIDSDI 123
>gi|156846922|ref|XP_001646347.1| hypothetical protein Kpol_1032p86 [Vanderwaltozyma polyspora DSM
70294]
gi|156117022|gb|EDO18489.1| hypothetical protein Kpol_1032p86 [Vanderwaltozyma polyspora DSM
70294]
Length = 222
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 62/146 (42%), Gaps = 9/146 (6%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ + + P F ++ +L ++ G I V + + G ++
Sbjct: 1 MFMLTKIKDLVRIPPDQFHRDSASSITHQLNNKFANKVIPHVGLCITVYDLLEVDEGQLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G V +RA+VF+PF GE++ +T+ G+ LS + IP +M F
Sbjct: 61 PGDGSSYIYVTFRAVVFKPFVGEIVTGWITKCTAEGIKVS---LSGMMDDIFIPKNMLF- 116
Query: 121 PNSNPVCYKSV-HGEVVIQEDDEIRL 145
C+ SV V D+E +L
Sbjct: 117 ----EGCFYSVSENAWVWPMDEETKL 138
>gi|322790751|gb|EFZ15495.1| hypothetical protein SINV_12920 [Solenopsis invicta]
Length = 145
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + L+ + + P F +L + + +L ++ G I + I I I
Sbjct: 1 MFVLVELKDTVRIQPSSFKQKLNDVIANELNRKLANKVYKDVGLCITLHDITKIEESYIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R IVFRP+ E+L + + G+ +G
Sbjct: 61 PGDGASHTKVTFRFIVFRPWMEEILIGKIRSCSPEGVHVTLG 102
>gi|347838548|emb|CCD53120.1| similar to DNA-directed RNA polymerase III 25 kDa polypeptide
[Botryotinia fuckeliana]
Length = 196
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 63/154 (40%), Gaps = 12/154 (7%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P+ G + ++ + + K G I + S GLI
Sbjct: 1 MFILTKIADLVQIAPQDLGKNASQAIEDNINLKYANKVIQKIGLCICFYDLLSASEGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM------FAEIGPLSCFISHHSIP 114
G G V V++R +VFRPFK E++ ++ + G+ F EI F+ +P
Sbjct: 61 HGDGLVNVNVEFRIVVFRPFKFEIMTGRISSSIESGIRVRTHFFDEI-----FVPAKMLP 115
Query: 115 TDMQFCPNSNPVCYKSVHG-EVVIQEDDEIRLKI 147
F N +++ G ++ + +R +I
Sbjct: 116 EGSHFNHNEQVFVWETEEGTQLYFDNQETVRFRI 149
>gi|399217952|emb|CCF74839.1| unnamed protein product [Babesia microti strain RI]
Length = 176
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 44/97 (45%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ + + P F L E +KL S+ G I V+ I G G I
Sbjct: 2 MFRLVTYRDSVEIKPCEFEKDLNELFIKKLNSKYTDKIIDGLGLAICVSDIIRYGKGAIL 61
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
+G +Y ++++ VF P++ +++ VV + G+
Sbjct: 62 RTKGSAIYKIEFKIAVFSPYRQQIIKGVVCHSDNNGI 98
>gi|290562083|gb|ADD38438.1| DNA-directed RNA polymerase III subunit RPC8 [Lepeophtheirus
salmonis]
Length = 200
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L+ + L G L + +++++ +V G + + I IG +
Sbjct: 1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V++R +VFRPF E+++ + +K G+ +G
Sbjct: 61 PGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLG 102
>gi|240275469|gb|EER38983.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H143]
Length = 202
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 41/97 (42%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +L + + P F ++ + + G I + GLI
Sbjct: 1 MFILTTLSDLVQISPEDFSKLSAVAIEDNINEKYANKVIQNVGLCIGFYDLLESSDGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
G G V VK+R IVFRPFKGEV+ +T + G+
Sbjct: 61 HGTGLVNVNVKFRLIVFRPFKGEVILGKITSGTENGI 97
>gi|358398243|gb|EHK47601.1| hypothetical protein TRIATDRAFT_83183 [Trichoderma atroviride IMI
206040]
Length = 193
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + P F ++ + ++ K G I++ + GLI
Sbjct: 1 MFILTKFSDLVQISPEDFSKHSIVAIEDNINAKYANKVVQKIGLCISLYDVLWTSEGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVL 85
G G V V++R IVFRPFKGEV+
Sbjct: 61 HGTGLVNVNVEFRMIVFRPFKGEVM 85
>gi|242799025|ref|XP_002483289.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Talaromyces stipitatus ATCC 10500]
gi|218716634|gb|EED16055.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Talaromyces stipitatus ATCC 10500]
Length = 195
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ + + P F ++ + + G I + GLI
Sbjct: 1 MFILTTISDLVQIRPEDFSKFSAVAIEDNINEKYANKVVQNIGLCIGFYDLLKSSDGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQF 119
G G V V +R IVFRPFKGE+L +T ++ G+ +IG F S ++P D+ F
Sbjct: 61 HGTGLVNVNVTFRLIVFRPFKGEILLGKITGSSEEGL--KIG--MEFFSDITVPGDLLF 115
>gi|315046208|ref|XP_003172479.1| DNA-directed RNA polymerase III polypeptide [Arthroderma gypseum
CBS 118893]
gi|311342865|gb|EFR02068.1| DNA-directed RNA polymerase III polypeptide [Arthroderma gypseum
CBS 118893]
Length = 195
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ + + P F ++ + + G +A + GLI
Sbjct: 1 MFILTTISDLVQIAPEDFSKLSAVAIEDNINEKYANKVIQNVGLCVAFYDLLESSDGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDM 117
G G V VK+R IVFRPFKGEV+ +T + G+ I F + +P DM
Sbjct: 61 HGTGLVNVNVKFRMIVFRPFKGEVIIGKITNGTEQGIKIGI----EFFNDIIVPPDM 113
>gi|325091306|gb|EGC44616.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H88]
Length = 195
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 41/97 (42%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +L + + P F ++ + + G I + GLI
Sbjct: 1 MFILTTLSDLVQISPEDFSKLSAVAIEDNINEKYANKVIQNVGLCIGFYDLLESSDGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
G G V VK+R IVFRPFKGEV+ +T + G+
Sbjct: 61 HGTGLVNVNVKFRLIVFRPFKGEVILGKITSGTENGI 97
>gi|358379479|gb|EHK17159.1| hypothetical protein TRIVIDRAFT_66115 [Trichoderma virens Gv29-8]
Length = 193
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + P F ++ + ++ K G I++ + GLI
Sbjct: 1 MFILTKFSDLVQISPEDFSKHSIVAIEDNINAKYANKVVQKIGLCISLYDVLWTSEGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVL 85
G G V V++R IVFRPFKGEV+
Sbjct: 61 HGTGLVNVNVEFRMIVFRPFKGEVM 85
>gi|385776296|ref|YP_005648864.1| DNA-directed RNA polymerase [Sulfolobus islandicus REY15A]
gi|323475044|gb|ADX85650.1| DNA-directed RNA polymerase [Sulfolobus islandicus REY15A]
Length = 180
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 1/156 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ I + + P FG L E +L + + G V+A+ + G++
Sbjct: 1 MYKLIKARSIVRIPPNEFGKPLNEIALNELRQQYQEKILKDLGLVLAILNVKISEEGILV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + V++ I + P EV++ V QV+ G+F +GP+ + I D
Sbjct: 61 FGDGATYHEVEFDMITYVPVVQEVVEGEVLQVDNYGVFVNLGPMDGLVHISQITDDTLKY 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASG 156
N + + + VIQ+ D++R +++ +G
Sbjct: 121 DNVRGIIFGE-KSKKVIQKGDKVRARVISVASTVTG 155
>gi|91092914|ref|XP_971430.1| PREDICTED: similar to DNA-directed RNA polymerase III 25 kDa
polypeptide [Tribolium castaneum]
gi|270003098|gb|EEZ99545.1| hypothetical protein TcasGA2_TC000127 [Tribolium castaneum]
Length = 199
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +++ + P F +L + + +L ++ G IA+ I S+ I
Sbjct: 1 MFIVAEMKNVTRIPPELFNLKLNDAIAGELNKKLANKVVLNVGLCIALYDITSLQESFIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R IVFRPF E+L + ++ G+ +G
Sbjct: 61 PGDGASHTRVSFRYIVFRPFIEEILVGKIRSCSQEGVHVTLG 102
>gi|242004630|ref|XP_002423183.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide,
putative [Pediculus humanus corporis]
gi|212506148|gb|EEB10445.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide,
putative [Pediculus humanus corporis]
Length = 200
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ I + P F L + + +++ ++ G IA+ I +G I
Sbjct: 1 MFVLAEIKDYIRISPCNFHKPLKDAISEEINKKLANKVVMNVGLSIALWDISELGDSHII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VFRPF E+L V ++ G+ +G
Sbjct: 61 PGDGCFHTRVCFRYVVFRPFLTEILVGKVKSCSQEGVVVTLG 102
>gi|326472028|gb|EGD96037.1| DNA-directed RNA polymerase III [Trichophyton tonsurans CBS
112818]
Length = 195
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 42/97 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ + + P F ++ + + G IA + GLI
Sbjct: 1 MFILTTISDLVQILPEDFSKLSAVAIEDNINEKYANKVIQNVGLCIAFYDLLESSDGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
G G V VK+R IVFRPFKGEV+ +T + G+
Sbjct: 61 HGTGLVNVNVKFRMIVFRPFKGEVIIGKITNGTEQGI 97
>gi|389631563|ref|XP_003713434.1| DNA-directed RNA polymerase III polypeptide [Magnaporthe oryzae
70-15]
gi|351645767|gb|EHA53627.1| DNA-directed RNA polymerase III polypeptide [Magnaporthe oryzae
70-15]
Length = 213
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F + ++ L + K G I + + GLI
Sbjct: 1 MFILTKIADLVQIKPAQFAKLSIDAIEDNLNEKYCNKVIQKVGLCICMYDLLWASEGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
G G V V+ R ++FRPFKGEVL +++ K G+
Sbjct: 61 HGDGLVNVNVECRLVIFRPFKGEVLFGRISRCVKDGI 97
>gi|225561861|gb|EEH10141.1| DNA-directed RNA polymerase III 25 kD polypeptide [Ajellomyces
capsulatus G186AR]
Length = 195
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 41/97 (42%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +L + + P F ++ + + G I + GLI
Sbjct: 1 MFILTTLSDLVQISPEDFSKLSAVAIEDNINEKYANKVIQNVGLCIGFYDLLESSDGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
G G V VK+R IVFRPFKGEV+ +T + G+
Sbjct: 61 HGTGLVNVNVKFRLIVFRPFKGEVILGKITSGTENGI 97
>gi|195174185|ref|XP_002027860.1| GL16275 [Drosophila persimilis]
gi|194115536|gb|EDW37579.1| GL16275 [Drosophila persimilis]
Length = 240
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L+ + + P F +L + ++ ++ ++ G IA+ I S+ +I
Sbjct: 1 MFVLAELKDTVRIAPDQFSVKLVDAIRDEIDRKLANKVLLNVGLCIALKDIVSLQDSIIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R IVFRP G V+ + ++ G+ +G
Sbjct: 61 PGDGASHTAVVFRYIVFRPKVGTVMTGKIRSCSREGVHVTLG 102
>gi|225711416|gb|ACO11554.1| DNA-directed RNA polymerase III subunit RPC8 [Caligus
rogercresseyi]
Length = 203
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%)
Query: 11 ILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPV 70
I L + G L E + +++ ++ G + + I IG + PG G V
Sbjct: 11 IRLPALHLGRNLPEALSEEINRKLSNRVVHNVGLAVCLFDILEIGESFLFPGDGASHTRV 70
Query: 71 KYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
+R +VFRPF EV++ + +K G+ +G
Sbjct: 71 NFRILVFRPFMEEVINGKIKSCSKDGVQVSLG 102
>gi|340515872|gb|EGR46123.1| predicted protein [Trichoderma reesei QM6a]
Length = 193
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + P F ++ + ++ K G I++ + GLI
Sbjct: 1 MFILTKFADLVQISPEDFSKHSIVAIEDNINAKYANKVVQKIGLCISLFDVLWTSEGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVL 85
G G V V++R IVFRPFKGEV+
Sbjct: 61 HGTGLVNVNVEFRMIVFRPFKGEVM 85
>gi|297735499|emb|CBI17939.3| unnamed protein product [Vitis vinifera]
Length = 189
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 21 QLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPF 80
L ET+K +L S+ G ++V I SI + PG G Y V++R ++FRPF
Sbjct: 116 SLNETIKGELESQFLDKVIANLGLCVSVYDIRSIDGDFVFPGDGASTYTVEFRLVMFRPF 175
>gi|254574134|ref|XP_002494176.1| RNA polymerase III subunit C25, required for transcription
initiation [Komagataella pastoris GS115]
gi|238033975|emb|CAY71997.1| RNA polymerase III subunit C25, required for transcription
initiation [Komagataella pastoris GS115]
gi|328354004|emb|CCA40401.1| DNA-directed RNA polymerase III subunit C25 [Komagataella
pastoris CBS 7435]
Length = 200
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 41 KYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
K G ++V + I GL++PG G VK+R I+++PF GEVL + + G+
Sbjct: 41 KLGLFVSVWDLIEIQDGLLKPGDGATFITVKFRGIIWKPFVGEVLTGWIKKNTPEGI 97
>gi|332158540|ref|YP_004423819.1| DNA-directed RNA polymerase subunit E' [Pyrococcus sp. NA2]
gi|331034003|gb|AEC51815.1| DNA-directed RNA polymerase subunit E' [Pyrococcus sp. NA2]
Length = 188
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ ++++ + + PR F E L EG G ++++ + +G G+I
Sbjct: 1 MYKIVTVKDVVRIPPRMFTMDPKEAAMTVLREIYEGKYDRDEGVILSIVEVKEVGDGIIV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFI 108
PG G + V + +V+ P + EV++ V V G F IGP+ +
Sbjct: 61 PGDGATYHEVTFDVLVWEPKQHEVVEGTVVDVVPFGAFVRIGPMDGLV 108
>gi|358372760|dbj|GAA89362.1| DNA-directed rna polymerase III 25 kD polypeptide [Aspergillus
kawachii IFO 4308]
Length = 193
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ I + P F ++ + + K G I + GLI
Sbjct: 1 MFILTTISDLIQISPEDFSKYSAVALEDNINEKYANKVIQKIGLCIGFYDLLESSDGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
G G V VK+R IVFRPFKGE++ ++ + G+
Sbjct: 61 HGTGLVNVNVKFRLIVFRPFKGEIMLGKISSATEHGI 97
>gi|57641634|ref|YP_184112.1| DNA-directed RNA polymerase subunit E' [Thermococcus kodakarensis
KOD1]
gi|57159958|dbj|BAD85888.1| DNA-directed RNA polymerase, subunit E' [Thermococcus kodakarensis
KOD1]
Length = 190
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 1/157 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + ++ + + PR F E K L EG G V+A+ ++ I G+I
Sbjct: 1 MYKLLKVKDVVRIPPRMFTMDPKEAAKIVLRETYEGIYDRDEGVVLAILDVEEISEGVIV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + + +V+ P EV++ V ++ G F IGP+ + + D
Sbjct: 61 PGDGATYHEAIFNVLVWEPRNQEVVEGEVVEMMPYGAFIRIGPMDGLVHISQLMDDYVVF 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGI 157
N + V++ D +R +I+G V + I
Sbjct: 121 DEKNR-QFIGKETNRVLKLGDYVRARIIGVSVKSRVI 156
>gi|380491621|emb|CCF35188.1| RNA polymerase III subunit Rpc25 [Colletotrichum higginsianum]
Length = 197
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 64/150 (42%), Gaps = 3/150 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F + ++ + ++ K G I + + GLI
Sbjct: 1 MFILTKIADLVEIAPEDFRKKSVAAIEDNINAKYANKVIQKIGLCICLYDLLWTSEGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQF 119
G G V V++R +VFRPFKGEV+ + G+ FI +P +F
Sbjct: 61 HGTGLVNVNVEFRLVVFRPFKGEVMFGRIRSSTPAGINLRTDFFDDIFIPFDELPEGAEF 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDE-IRLKIV 148
+S + ++ G+ + ++ E +R +++
Sbjct: 121 N-HSEQLWIWNIEGDRLFYDNHEMVRFQVI 149
>gi|427786869|gb|JAA58886.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 198
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + I + P F E + ++L + G IA+ I I I
Sbjct: 1 MFVISEMSDSIRVPPWLFRVSPNEAIVEQLNRRLANKVVINVGLCIALYDITKIEDSRIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V++R +VFRPF EVL + ++ G++ +G
Sbjct: 61 PGDGSFHTTVQFRYVVFRPFMDEVLIGKIRSSSQEGIYVSMG 102
>gi|315231773|ref|YP_004072209.1| DNA-directed RNA polymerase subunit E' [Thermococcus barophilus MP]
gi|315184801|gb|ADT84986.1| DNA-directed RNA polymerase subunit E' [Thermococcus barophilus MP]
Length = 186
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 1/155 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ ++++ + + PR F E K L EG G ++AV + + G+I
Sbjct: 1 MYKLLTVKDVVRIPPRMFTMDPKEAAKIVLRETYEGIYDKDEGVILAVLDVHEVSEGVIV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G + V + +V++P EV++ V V G F IGP+ + + D
Sbjct: 61 PGDGATYHEVVFDVLVWKPEMHEVVEGEVVDVAPYGAFIRIGPMDGLVHISQLMDDYVVF 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDAS 155
N + + +++ DE+R +I+ V +
Sbjct: 121 DEKNK-QFLGKEKKYLLKLGDEVRARIIAISVKSR 154
>gi|154283489|ref|XP_001542540.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150410720|gb|EDN06108.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 693
Score = 43.1 bits (100), Expect = 0.035, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 41/97 (42%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +L + + P F ++ + + G I + GLI
Sbjct: 1 MFILTTLSDLVQISPEDFSKLSAVAIEDNINEKYANKVIQNVGLCIGFYDLLESSDGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
G G V VK+R IVFRPFKGEV+ +T + G+
Sbjct: 61 HGTGLVNVNVKFRLIVFRPFKGEVILGKITSGTENGI 97
>gi|154308992|ref|XP_001553831.1| hypothetical protein BC1G_08024 [Botryotinia fuckeliana B05.10]
Length = 196
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 63/154 (40%), Gaps = 12/154 (7%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P+ G + ++ + + K G I + S GLI
Sbjct: 1 MFILTKIADLVQIAPQDLGKNASQAIEDNINLKYANKVIQKIGLCICFYDLLSASEGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM------FAEIGPLSCFISHHSIP 114
G G V V++R +VFRPFK E++ ++ + G+ F EI F+ +P
Sbjct: 61 HGDGLVNVNVEFRIVVFRPFKFEIMTGRISSSIESGIRVRTHFFDEI-----FVPAKMLP 115
Query: 115 TDMQFCPNSNPVCYKSVHG-EVVIQEDDEIRLKI 147
F N +++ G ++ + +R ++
Sbjct: 116 EGSHFNHNEQVFVWETEEGTQLYFDNQETVRFRV 149
>gi|221505857|gb|EEE31502.1| RNA polymerase Rpb7, N-terminal domain-containing protein, putative
[Toxoplasma gondii VEG]
Length = 1221
Score = 43.1 bits (100), Expect = 0.037, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 19 GPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFR 78
G L + +++K ++V C G +A + I + I+ G G Y V++ + FR
Sbjct: 1044 GEVLRKAIEEKYLNKVVVNC----GLAVAFYELRRIQSATIRSGDGSARYKVEFSLVFFR 1099
Query: 79 PFKGEVLDAVVTQVNKVGMFAEIG 102
PF+GE+L+ + + G+ +G
Sbjct: 1100 PFQGEILEGTLMHSDNHGLRISLG 1123
>gi|237838547|ref|XP_002368571.1| RNA polymerase Rpb7, N-terminal domain-containing protein [Toxoplasma
gondii ME49]
gi|211966235|gb|EEB01431.1| RNA polymerase Rpb7, N-terminal domain-containing protein [Toxoplasma
gondii ME49]
Length = 1215
Score = 43.1 bits (100), Expect = 0.037, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 19 GPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFR 78
G L + +++K ++V C G +A + I + I+ G G Y V++ + FR
Sbjct: 1038 GEVLRKAIEEKYLNKVVVNC----GLAVAFYELRRIQSATIRSGDGSARYKVEFSLVFFR 1093
Query: 79 PFKGEVLDAVVTQVNKVGMFAEIG 102
PF+GE+L+ + + G+ +G
Sbjct: 1094 PFQGEILEGTLMHSDNHGLRISLG 1117
>gi|145507598|ref|XP_001439754.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124406949|emb|CAK72357.1| unnamed protein product [Paramecium tetraurelia]
Length = 410
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 83/186 (44%), Gaps = 23/186 (12%)
Query: 1 MFYHIS-LEHEILLHPRYFGPQLYET--VKQKLYSEVEGTCTGKYGFVIAVT-------T 50
MFY + L+ ++ + P Y QL + + +++ ++EG G++I +
Sbjct: 1 MFYVVKGLKTKLSIEPNYLD-QLKDQKFILEQIVQKLEGKYFDDVGYIICINKCMNYNQN 59
Query: 51 IDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISH 110
D LI+ G V +K+ AIVF+ + E++D V + ++A++GP+ I
Sbjct: 60 QDEQIDALIEED-GTVKVVIKFEAIVFKVQEKEIVDVEVIKCEAQAVYAKLGPIDFIIPR 118
Query: 111 HSIPTDMQFCPNSN-------PVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTL 163
+PT+ F SN YK E VI++ ++R+++ T + A L
Sbjct: 119 DKLPTNYTF---SNVYLSLLTQESYKD-QDEEVIKQGTKLRVQVQKTHYKQGKLRAFAHL 174
Query: 164 MDDYLG 169
D L
Sbjct: 175 TGDNLD 180
>gi|221484160|gb|EEE22456.1| RNA polymerase Rpb7, N-terminal domain-containing protein, putative
[Toxoplasma gondii GT1]
Length = 1214
Score = 43.1 bits (100), Expect = 0.037, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 19 GPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFR 78
G L + +++K ++V C G +A + I + I+ G G Y V++ + FR
Sbjct: 1037 GEVLRKAIEEKYLNKVVVNC----GLAVAFYELRRIQSATIRSGDGSARYKVEFSLVFFR 1092
Query: 79 PFKGEVLDAVVTQVNKVGMFAEIG 102
PF+GE+L+ + + G+ +G
Sbjct: 1093 PFQGEILEGTLMHSDSHGLRISLG 1116
>gi|209881416|ref|XP_002142146.1| DNA-directed RNA polymerase II subunit RPB7 [Cryptosporidium muris
RN66]
gi|209557752|gb|EEA07797.1| DNA-directed RNA polymerase II subunit RPB7, putative
[Cryptosporidium muris RN66]
Length = 198
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/162 (19%), Positives = 69/162 (42%), Gaps = 28/162 (17%)
Query: 26 VKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVL 85
+K+++ + G VI++ D + +I G + + +R IVF+PF E++
Sbjct: 43 LKERISEKYINKVIKNVGLVISLVEFDYVDHAVIDSDDGSLYFNTTFRIIVFKPFISEII 102
Query: 86 DAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQE------ 139
+ +V + G+ +G F + IP++ P KS++G+ +
Sbjct: 103 EGIVINSDSTGLTVSLG----FFNDIKIPSNELREP-------KSMNGDTKLWSWNYETH 151
Query: 140 ------DDEIRLKIVG-----TRVDASGIFAIGTLMDDYLGL 170
+ IR ++ G + + S + +G + +D LG+
Sbjct: 152 QLYYLINSIIRFRVTGVLFNDSDTEVSSMVIMGNVQNDGLGM 193
>gi|125979739|ref|XP_001353902.1| GA20275 [Drosophila pseudoobscura pseudoobscura]
gi|54640887|gb|EAL29638.1| GA20275 [Drosophila pseudoobscura pseudoobscura]
Length = 240
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L+ + + P F +L + ++ ++ ++ G IA+ I S+ +I
Sbjct: 1 MFVLAELKDTVRIAPDQFSVKLVDAIRDEIDRKLANKVLLNVGLCIALKDIVSLQDSIIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R IVFRP G V+ + ++ G+ +G
Sbjct: 61 PGDGASHTAVVFRYIVFRPKVGTVVTGKIRSCSREGVHVTLG 102
>gi|296806184|ref|XP_002843902.1| DNA-directed RNA polymerase III 25 kD polypeptide [Arthroderma otae
CBS 113480]
gi|238845204|gb|EEQ34866.1| DNA-directed RNA polymerase III 25 kD polypeptide [Arthroderma otae
CBS 113480]
Length = 202
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 1 MFYHISLEHEILLHPRYFGP----QLYETVKQKLYSEV---EGTCTGKYGFVIAVTTIDS 53
MF ++ + + P F + + + +K ++V G C Y + + +
Sbjct: 1 MFLLTTMSDLVQIAPEDFSKLSSVAIEDNINEKYANKVIQNVGLCIAFYDLLESSDGLIG 60
Query: 54 IGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
G GL+ + +++ VK+R IVFRPFKGEV+ +T + G+
Sbjct: 61 HGTGLVNVNERWLILAVKFRIIVFRPFKGEVIIGKITNGTEQGI 104
>gi|342905869|gb|AEL79218.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Rhodnius
prolixus]
Length = 130
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 7/113 (6%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF S I P F L ++ L ++ G + + I+S+ +
Sbjct: 1 MFKLTSFRDVIRTPPALFDVDLKTSISNYLNEKLSNKVVKNIGLCVVLFDIESMDDSFLF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG-------PLSC 106
PG G V++R +VFRPF EV+ + K G+ +G P SC
Sbjct: 61 PGDGGAHTKVEFRFVVFRPFIEEVIVGKIKNCTKEGVHVTLGFFDDIFIPESC 113
>gi|145253312|ref|XP_001398169.1| DNA-directed RNA polymerase III subunit RPC8 [Aspergillus niger
CBS 513.88]
gi|134083732|emb|CAK42970.1| unnamed protein product [Aspergillus niger]
gi|350633207|gb|EHA21573.1| hypothetical protein ASPNIDRAFT_51264 [Aspergillus niger ATCC
1015]
Length = 193
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ I + P F ++ + + K G I + GLI
Sbjct: 1 MFILTTVSDLIQISPEDFSKYSAVALEDNINEKYANKVIQKIGLCIGFYDLLESSDGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
G G V VK+R IVFRPFKGE++ ++ + G+
Sbjct: 61 HGTGLVNVNVKFRLIVFRPFKGEIMLGKISSATEHGI 97
>gi|320040236|gb|EFW22169.1| DNA-directed RNA polymerase III polypeptide [Coccidioides
posadasii str. Silveira]
Length = 195
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 1 MFYHISLEHEILLHPRYFGP----QLYETVKQKLYSEV---EGTCTGKYGFVIAVTTIDS 53
MF ++ + + P F + + + +K ++V G C G Y F+ +
Sbjct: 1 MFILTTISDLVQISPEDFSKLSAVAIEDNINEKYANKVIQNVGLCMGFYDFLES------ 54
Query: 54 IGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
GLI G G V VK+R IVFRPFKGEV+ +T + G+
Sbjct: 55 -SDGLIGHGTGLVNVNVKFRLIVFRPFKGEVILGKITSGTEQGI 97
>gi|403367976|gb|EJY83816.1| DNA-directed RNA polymerase, subunit E' [Oxytricha trifallax]
Length = 215
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 1 MFYHISLEHEILLHP---RYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAG 57
MF ++ E++L P F L +K +L ++V G +A+ +I +
Sbjct: 1 MFELYTIVDEVILQPGELSDFNLTLENKIKARLLNKV----LANEGICVAIKSI-KVLEK 55
Query: 58 LIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSI 113
+I G+G V V+ ++FRP E+L+A +T N+ G+F +G FI ++
Sbjct: 56 IIVVGEGSVQCKVETNLVIFRPIVSEILNAKITLQNEYGIFGVVGCAPVFIPSENL 111
>gi|367014661|ref|XP_003681830.1| hypothetical protein TDEL_0E03760 [Torulaspora delbrueckii]
gi|359749491|emb|CCE92619.1| hypothetical protein TDEL_0E03760 [Torulaspora delbrueckii]
Length = 210
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 42/97 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F V +L ++ G I + + + G ++
Sbjct: 1 MFILSKINDLVRISPDQFHRDTASAVTHQLNNKFANKVIPHVGLCITIYDLLEVDEGQLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
PG G V +RA+VF+PF GEVL +++ G+
Sbjct: 61 PGDGASYIYVTFRALVFKPFAGEVLTGWISKCTAEGI 97
>gi|167385847|ref|XP_001737514.1| DNA-directed RNA polymerase II subunit RPB7 [Entamoeba dispar
SAW760]
gi|165899670|gb|EDR26214.1| DNA-directed RNA polymerase II subunit RPB7, putative [Entamoeba
dispar SAW760]
Length = 180
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
I G G VV+ VK+ AIV + + EV+D +++ VNK G+ ++G S D +
Sbjct: 68 IAEGTGNVVFSVKFEAIVQKIIRSEVVDGIISSVNKEGVTVDVGSWKNIHVTASKVADCE 127
Query: 119 FCPNSNPVCYK 129
+ S CY+
Sbjct: 128 YVEQSG--CYR 136
>gi|401402842|ref|XP_003881348.1| hypothetical protein NCLIV_043800 [Neospora caninum Liverpool]
gi|325115760|emb|CBZ51315.1| hypothetical protein NCLIV_043800 [Neospora caninum Liverpool]
Length = 200
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 22/144 (15%)
Query: 22 LYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFK 81
L +++K ++V C G +A + I + I+ G G Y V++ + FRPF+
Sbjct: 26 LRRAIEEKYLNKVVANC----GLAVAFYELRRIQSATIRSGDGSARYKVEFALVFFRPFQ 81
Query: 82 GEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNS-NPVCYKSVHGEVVIQED 140
GE+L+ + + G+ +G F +P P NP + G ED
Sbjct: 82 GEILEGTLMHSDTQGLRISLG----FFQDVYVPAAALREPRGFNPASERWWWG----FED 133
Query: 141 DE---------IRLKIVGTRVDAS 155
E IR ++ R D S
Sbjct: 134 HELEYGPLQQAIRFRVQEIRFDQS 157
>gi|407041447|gb|EKE40735.1| DNA-directed RNA polymerase II subunit, putative [Entamoeba
nuttalli P19]
Length = 180
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
I G G VV+ VK+ AIV + + EV+D +++ VNK G+ ++G S D +
Sbjct: 68 IAEGTGNVVFSVKFEAIVQKIIRSEVVDGIISSVNKEGVTVDVGSWKNIHVTASKVADCE 127
Query: 119 FCPNSNPVCYK 129
+ S CY+
Sbjct: 128 YVEQSG--CYR 136
>gi|183231195|ref|XP_655527.2| DNA-directed RNA polymerase II subunit [Entamoeba histolytica
HM-1:IMSS]
gi|169802591|gb|EAL50138.2| DNA-directed RNA polymerase II subunit, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449702520|gb|EMD43146.1| DNA-directed RNA polymerase II subunit, putative [Entamoeba
histolytica KU27]
Length = 180
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%)
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
I G G VV+ VK+ AIV + + EV+D +++ VNK G+ ++G S D +
Sbjct: 68 IAEGTGNVVFSVKFEAIVQKIIRSEVVDGIISSVNKEGVTVDVGSWKNIHVTASKVADCE 127
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTL 163
+ S K + I++ +R++ + +G +GT+
Sbjct: 128 YVEQSGCYRDKDRTSQYQIRKGSHVRVRSDVVDYNINGKKCLGTI 172
>gi|50290635|ref|XP_447750.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527061|emb|CAG60697.1| unnamed protein product [Candida glabrata]
Length = 216
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L+ + + P F + +L + G ++V + + G ++
Sbjct: 1 MFILTKLKDLVRIPPDQFHRDAVSAITHELNVKYSNKVVPHVGLSVSVYDLLEVDEGQLR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVL-------DAVVTQVNKVGMFAEI 101
PG G V +R +VF+PF GE+L D QV+ +G+F +I
Sbjct: 61 PGDGASYINVTFRCVVFKPFAGEILTGWIKRCDGEGIQVSMMGLFDDI 108
>gi|255953671|ref|XP_002567588.1| Pc21g05420 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589299|emb|CAP95439.1| Pc21g05420 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 185
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%)
Query: 11 ILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPV 70
IL+ P F ++ + ++ K G I+ + GLI G G V V
Sbjct: 3 ILISPEDFSKFSAVALEDNINAKYANKVIQKIGLCISFYDLLESSDGLIGHGTGLVNVNV 62
Query: 71 KYRAIVFRPFKGEVL 85
K+R IVFRPFKGE++
Sbjct: 63 KFRMIVFRPFKGEIM 77
>gi|357626904|gb|EHJ76803.1| putative RNA polymerase III polypeptide H [Danaus plexippus]
Length = 213
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ + + P +F L E++ L ++ G IA+ I +IG I
Sbjct: 1 MFVLSEMKDVLRVTPEHFHQSLTESITTLLNRKLANKVVLNVGLCIALFDITNIGHSYIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R IVFRP E+L + ++ G+ +G
Sbjct: 61 PGDGSSHTEVIFRYIVFRPLVEEILIGKIRSCSRDGVHVTMG 102
>gi|375082560|ref|ZP_09729616.1| DNA-directed RNA polymerase subunit E' [Thermococcus litoralis DSM
5473]
gi|374742780|gb|EHR79162.1| DNA-directed RNA polymerase subunit E' [Thermococcus litoralis DSM
5473]
Length = 187
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 1/150 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ I ++ + + P+ F E K L EG G ++A+ + I G+I
Sbjct: 1 MYKLIQVKDVVRIPPKMFTMDPKEAAKIVLREAYEGIYDKDEGVILAILDVHEISEGVII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + + +V++P EV++ V V G F IGP+ + + D
Sbjct: 61 HGDGATYHEAVFDVLVWKPEMHEVVEGEVIDVVPYGAFIRIGPMDGLVHISQLMDDYVVF 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGT 150
N G +++ D +R +I+
Sbjct: 121 DEKNAQFVGKEKG-YILKLGDAVRARIIAV 149
>gi|67521980|ref|XP_659051.1| hypothetical protein AN1447.2 [Aspergillus nidulans FGSC A4]
gi|40745421|gb|EAA64577.1| hypothetical protein AN1447.2 [Aspergillus nidulans FGSC A4]
gi|259486758|tpe|CBF84875.1| TPA: DNA-directed RNA polymerase III subunit 22.9 kDa, putative
(AFU_orthologue; AFUA_8G04350) [Aspergillus nidulans
FGSC A4]
Length = 208
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ I + P F ++ + + K G I + GLI
Sbjct: 1 MFILTTISDLIQISPEDFSKYSSVAIEDNINEKYANKVIQKIGLCIGFYDLLESSDGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
G G V VK+R IVFRPF+GE++ ++ + G+
Sbjct: 61 HGTGLVNVNVKFRLIVFRPFRGEIVLGKISSATENGI 97
>gi|119484158|ref|XP_001261982.1| DNA-directed rna polymerase III 25 kD polypeptide [Neosartorya
fischeri NRRL 181]
gi|119410138|gb|EAW20085.1| DNA-directed rna polymerase III 25 kD polypeptide [Neosartorya
fischeri NRRL 181]
Length = 201
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%)
Query: 11 ILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPV 70
I + P F ++ + + K G I + GLI G G V V
Sbjct: 19 IQISPEDFSKYSAVAIEDNINEKYANKVIQKIGLCIGFYDLLESSDGLIGHGTGLVNVNV 78
Query: 71 KYRAIVFRPFKGEVLDAVVTQVNKVGM 97
K+R IVFRPFKGE+L ++ + G+
Sbjct: 79 KFRLIVFRPFKGEILLGKISSATQHGI 105
>gi|126460593|ref|YP_001056871.1| DNA-directed RNA polymerase subunit E' [Pyrobaculum calidifontis
JCM 11548]
gi|126250314|gb|ABO09405.1| DNA-directed RNA polymerase, subunit E' [Pyrobaculum calidifontis
JCM 11548]
Length = 194
Score = 42.7 bits (99), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%)
Query: 2 FYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQP 61
F + E + + P FG L + +L + E + G+V+AV ++ G I
Sbjct: 3 FKLVEAEDYVRIPPSEFGKPLEDIALAQLKARYENRVVREVGYVVAVLSVKVKREGKIIF 62
Query: 62 GQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCP 121
G G + ++ + F P GEV++ VV V +VGM IGP+ FI+ + +
Sbjct: 63 GDGGTYHKARFTLLAFVPLDGEVVEGVVENVREVGMLVRIGPIVGFINKIHVMDEPNIFF 122
Query: 122 NSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
+++ Y + D +R +I G
Sbjct: 123 DASTKSYIGERTRRRVSVGDIVRARITG 150
>gi|389851850|ref|YP_006354084.1| DNA-directed RNA polymerase subunit E' [Pyrococcus sp. ST04]
gi|388249156|gb|AFK22009.1| DNA-directed RNA polymerase subunit E' [Pyrococcus sp. ST04]
Length = 188
Score = 42.7 bits (99), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ ++++ + + PR F E L EGT G ++++ + +G G+I
Sbjct: 1 MYKIVTVKDVVRIPPRMFTMDPKEAAMIVLREAYEGTYDRDEGVILSIVEVKEVGDGIIV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFI 108
PG G + V + +V+ P EV++ V V G F IGP+ +
Sbjct: 61 PGDGATYHEVVFDVLVWEPKLHEVVEGTVVDVVPFGAFIRIGPMDGLV 108
>gi|425771830|gb|EKV10263.1| hypothetical protein PDIP_61090 [Penicillium digitatum Pd1]
gi|425777177|gb|EKV15361.1| hypothetical protein PDIG_26640 [Penicillium digitatum PHI26]
Length = 193
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ I + P F ++ + ++ K G I+ + GLI
Sbjct: 1 MFVLTTISDLIQISPEDFSKFSAVALEDNINAKYANKVIQKIGLCISFYDLLESSDGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVL 85
G G V VK+R IVFRPFKGE++
Sbjct: 61 HGTGLVNVNVKFRMIVFRPFKGEIM 85
>gi|261197898|ref|XP_002625351.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239595314|gb|EEQ77895.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239607836|gb|EEQ84823.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces
dermatitidis ER-3]
gi|327355776|gb|EGE84633.1| DNA-directed RNA polymerase III subunit polypeptide [Ajellomyces
dermatitidis ATCC 18188]
Length = 195
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ + + P F ++ + + G I+ + GLI
Sbjct: 1 MFILTTISDLVQISPEDFSKLSAVAIEDNINEKYANKVIQNVGLCISFYDLLESSDGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
G G V VK+R IVFRPFKGE++ +T + G+
Sbjct: 61 HGTGLVNVNVKFRLIVFRPFKGEIILGKITSGTENGI 97
>gi|295665246|ref|XP_002793174.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Paracoccidioides sp. 'lutzii' Pb01]
gi|225679219|gb|EEH17503.1| conserved hypothetical protein [Paracoccidioides brasiliensis
Pb03]
gi|226278088|gb|EEH33654.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226290932|gb|EEH46360.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Paracoccidioides brasiliensis Pb18]
Length = 195
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ + + P F ++ + + G I + GLI
Sbjct: 1 MFILTTISDLVQISPEDFSKLSAVAIEDNINEKYANKVVQNVGLCIGFYDLLEASDGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
G G V VK+R IVFRPFKGE++ +T + G+
Sbjct: 61 HGTGLVNVNVKFRLIVFRPFKGEIILGKITSGTENGI 97
>gi|281208326|gb|EFA82502.1| RNA polymerase III subunit [Polysphondylium pallidum PN500]
Length = 267
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 22/158 (13%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKY----GFVIAVTTIDSIGA 56
MF+ I++E ++ + P F ++ Q + E+E + K G IA+ I G
Sbjct: 1 MFHLITIEDKVRIPPNQFNNEI-----QTIEDEIEKKYSNKVVIDGGLFIALYDILGTGD 55
Query: 57 GLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNK------VGMFAEIGPLSCFISH 110
+ G G V+ R +VF+PF GE+L+ + + + +G F +I L+
Sbjct: 56 AYVYSGDGGSHLLVRCRLVVFKPFVGEILEGFIKKSTRDYMQLSLGFFDDIQVLAL---- 111
Query: 111 HSIPTDMQFCPNSNPVCYKSVHGEVVIQEDD-EIRLKI 147
+PT F + + Y + + ED +R KI
Sbjct: 112 -DLPT-QSFYHDEEKLWYWDWNDNQLFFEDRGRVRFKI 147
>gi|121719683|ref|XP_001276540.1| DNA-directed rna polymerase III 25 kD polypeptide [Aspergillus
clavatus NRRL 1]
gi|119404752|gb|EAW15114.1| DNA-directed rna polymerase III 25 kD polypeptide [Aspergillus
clavatus NRRL 1]
Length = 216
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%)
Query: 11 ILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPV 70
I + P F ++ + + K G I + GLI G G V V
Sbjct: 34 IQISPEDFSKYSAVAIEDNINEKYANKVIQKIGLCIGFYDLLESSDGLIGHGTGLVNVNV 93
Query: 71 KYRAIVFRPFKGEVLDAVVTQVNKVGM 97
K+R IVFRPFKGE++ ++ + G+
Sbjct: 94 KFRLIVFRPFKGEIMLGKISSATQQGI 120
>gi|346470681|gb|AEO35185.1| hypothetical protein [Amblyomma maculatum]
Length = 198
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + I + P F + + ++L + G IA+ I I I
Sbjct: 1 MFVISEMSDSIRIPPWLFRLNPNDAIVEQLNRRLANKVVINVGLCIALFDITRIEDSKIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V++R +VFRPF EVL + ++ G++ +G
Sbjct: 61 PGDGSFHTTVQFRYVVFRPFMDEVLVGKIRSCSQEGVYVSMG 102
>gi|241570289|ref|XP_002402677.1| DNA-directed RNA polymerase subunit E', putative [Ixodes
scapularis]
gi|215502059|gb|EEC11553.1| DNA-directed RNA polymerase subunit E', putative [Ixodes
scapularis]
gi|442750295|gb|JAA67307.1| Putative dna-directed rna polymerase subunit e' [Ixodes ricinus]
Length = 200
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 4/116 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + I + P F + + ++L + G IA+ + I I
Sbjct: 1 MFVISEMSDNIRIPPWLFRLNPNDAIVEQLNRRLANKVVINVGLCIALFDVTKIEDSKIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
PG G V++R +VFRPF EVL + ++ G++ +G F IP D
Sbjct: 61 PGDGSFHTTVEFRYVVFRPFMDEVLVGKIRSCSQEGVYVSMG----FFDDILIPPD 112
>gi|429854331|gb|ELA29351.1| DNA-directed RNA polymerase iii polypeptide [Colletotrichum
gloeosporioides Nara gc5]
Length = 197
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 64/150 (42%), Gaps = 3/150 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F + ++ + ++ K G I + + GLI
Sbjct: 1 MFILTKIADLVEIAPEDFRKKSGTAIEDNINAKYANKVIQKIGLCICLYDLLWTSEGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQF 119
G G V V++R IVFRPFKGEV+ + G+ FI +P ++
Sbjct: 61 HGTGLVNVNVEFRMIVFRPFKGEVMIGRIRSSTPAGINLRTDFFDDIFIPFDELPEGAEY 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDE-IRLKIV 148
+S + ++ G+ + ++ E +R +++
Sbjct: 121 N-HSEQLWIWNIEGDRLFYDNHEMVRFQVI 149
>gi|212541336|ref|XP_002150823.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Talaromyces marneffei ATCC 18224]
gi|210068122|gb|EEA22214.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Talaromyces marneffei ATCC 18224]
Length = 194
Score = 42.4 bits (98), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ + + P F ++ + + K G I + GLI
Sbjct: 1 MFLLATISDLVQIRPEDFSKFSAVAIEDNINEKYANKVIQKIGLCIGFYDLLKSSDGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
G G V V +R IVFRPFKGE+L + ++ G+
Sbjct: 61 HGTGLVNVNVTFRLIVFRPFKGEILLGKIASASEEGL 97
>gi|126343684|ref|XP_001363572.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Monodelphis domestica]
Length = 204
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 46/102 (45%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L E++ ++L ++ G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERELNESISEELNKKLANKVVYNIGLCICLYDITKLEDAYVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L V+ + G++ +G
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGVIKGCSPDGVYVSLG 102
>gi|402223542|gb|EJU03606.1| polymerase III polypeptide H [Dacryopinax sp. DJM-731 SS1]
Length = 238
Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 4/117 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L+ + +HP F +E + ++ + G I + I G ++
Sbjct: 1 MFVLARLKDTLPIHPSQFSLPGHEALTYEINRKYSDRVLHDVGLCIVLFDILECSEGRVR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDM 117
G G + + V +R +VFRPF GEVL V + G+ +G F +PT +
Sbjct: 61 FGDGCLWHKVTFRMVVFRPFVGEVLVGEVKGCAEEGVQVSLG----FFDDIHVPTRL 113
>gi|148672604|gb|EDL04551.1| polymerase (RNA) III (DNA directed) polypeptide H, isoform CRA_e
[Mus musculus]
Length = 118
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 4/120 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L +++ ++L ++ G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG G V +R +VF PF E+L + + G+ +G F IP D+ C
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLG----FFDDILIPPDLTCC 116
>gi|449283297|gb|EMC89974.1| DNA-directed RNA polymerase III subunit RPC8 [Columba livia]
Length = 206
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L E++ ++L ++ G I + I + I
Sbjct: 1 MFVLVEMTDTVRIPPWQFERKLNESIAEELNKKLANKVVYNVGLCICLYDITKLEDSYIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + ++ G+ IG
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGQIKSCSQDGVHVSIG 102
>gi|397638385|gb|EJK73047.1| hypothetical protein THAOC_05356 [Thalassiosira oceanica]
Length = 314
Score = 42.0 bits (97), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 54 IGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
IG G++ P G + V ++ +VFRPF GEVL VT+ N+ G+ +G
Sbjct: 55 IGHGMLVPADGGAHHQVIFQCLVFRPFVGEVLIGTVTESNEAGIKVSVG 103
>gi|348511267|ref|XP_003443166.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Oreochromis niloticus]
Length = 214
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 45/102 (44%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F QL E V ++L ++ G I + I + I
Sbjct: 1 MFVLVEMVDTVRIPPWNFHRQLNEAVAEELNKKLANKVVYNVGLCICLYDITKLEDSYIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + ++ G++ +G
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKYCSQEGVYVTMG 102
>gi|118404162|ref|NP_001072397.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Xenopus
(Silurana) tropicalis]
gi|111306182|gb|AAI21598.1| hypothetical protein MGC147203 [Xenopus (Silurana) tropicalis]
Length = 207
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 46/102 (45%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + +P F +L +++ ++L ++ G I + I + I
Sbjct: 1 MFVLVEMVDTVRTNPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKMDDSYIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V++R +VFRPF E+L + + G+ +G
Sbjct: 61 PGDGASHTKVQFRYVVFRPFLDEILMGKIKGCSPEGVHVSLG 102
>gi|118082710|ref|XP_416229.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Gallus
gallus]
gi|326912007|ref|XP_003202346.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Meleagris gallopavo]
Length = 206
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L E++ ++L ++ G I + I + I
Sbjct: 1 MFVLVEMTDTVRIPPWQFERKLNESIAEELNKKLANKVVYNVGLCICLYDITKLEDSYIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + ++ G+ IG
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILVGEIKSCSQDGVHVSIG 102
>gi|198421693|ref|XP_002128691.1| PREDICTED: similar to KIAA1665 protein isoform 1 [Ciona
intestinalis]
Length = 205
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 43/102 (42%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + ++ + + P F L + VK +L + G I + I I
Sbjct: 1 MFILVEMKDTVKVEPWLFNVNLNDAVKVELNRRLANKVVYNIGVCICLFDILKYEDSYIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VFRPF EVL + ++ G+ +G
Sbjct: 61 PGDGASHTKVHFRCVVFRPFVDEVLIGKIKGCSQEGVTVSLG 102
>gi|327305103|ref|XP_003237243.1| DNA-directed RNA polymerase III [Trichophyton rubrum CBS 118892]
gi|326460241|gb|EGD85694.1| DNA-directed RNA polymerase III [Trichophyton rubrum CBS 118892]
Length = 196
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ + + P F ++ + + G IA + GLI
Sbjct: 1 MFILTTISDLVQISPEDFSKLSAVAIEDNINEKYANKVIQNVGLCIAFYDLLESSDGLIG 60
Query: 61 PGQGFV-VYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
G G V V VK+R IVFRPFKGEV+ +T + G+
Sbjct: 61 HGTGLVNVNVVKFRMIVFRPFKGEVIIGKITNGTEQGI 98
>gi|396473245|ref|XP_003839299.1| similar to DNA-directed RNA polymerase III 25 kDa polypeptide
[Leptosphaeria maculans JN3]
gi|312215868|emb|CBX95820.1| similar to DNA-directed RNA polymerase III 25 kDa polypeptide
[Leptosphaeria maculans JN3]
Length = 213
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/148 (20%), Positives = 64/148 (43%), Gaps = 1/148 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +++ I + P+ F + +K + + G I + + S GLI
Sbjct: 1 MFILTTIQDLIQIAPQDFKKPSDQAIKDVVNDKYSNKIVPGIGLCICMWDLLSASEGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLS-CFISHHSIPTDMQF 119
G G V +++R VFRPF+GE++ + + G+ ++ S FI + ++ + F
Sbjct: 61 HGTGLVNVNIEFRMAVFRPFRGEIIYGRIKSSSPEGIIIDLDFTSEIFIPYQNLFENSSF 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKI 147
+ + S E+ + + + ++
Sbjct: 121 DQAESVWVWNSDGTELFFDKGEPVLFRV 148
>gi|406865974|gb|EKD19014.1| RNA polymerase III subunit Rpc25 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 250
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%)
Query: 18 FGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVF 77
F ++ ++ + ++ K G + + + + GLI G G V V++R IVF
Sbjct: 47 FNKDAFQALQDNINAKYANKVIQKIGLCVCLYDLLAASEGLIGHGTGLVNVNVEFRLIVF 106
Query: 78 RPFKGEVLDAVVTQVNKVGM 97
RPFK EV+ ++ G+
Sbjct: 107 RPFKNEVITGRISSATPRGI 126
>gi|383853110|ref|XP_003702067.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Megachile rotundata]
Length = 204
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L+ + + P F +L + V +L ++ G IA+ I I I
Sbjct: 1 MFVLAELKDTVRIPPWEFKRKLNDAVTDELNRKLANKVYLNVGLCIALHDITKIEESYIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R IVFRPF E+L + + G+ +G
Sbjct: 61 PGDGASHTKVIFRFIVFRPFMEEILIGKIRSCSVDGVHVTLG 102
>gi|310831427|ref|YP_003970070.1| putative DNA-directed RNA polymerase subunit Rpb7 [Cafeteria
roenbergensis virus BV-PW1]
gi|309386611|gb|ADO67471.1| putative DNA-directed RNA polymerase subunit Rpb7 [Cafeteria
roenbergensis virus BV-PW1]
Length = 232
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 4/125 (3%)
Query: 2 FYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQP 61
+Y I + I+L P + +K L ++EG C K+G++ + I G I
Sbjct: 9 YYDIEQKDFIMLKPHQMNSDIKLNLKINLKEKIEGKC-NKFGYIDKIYKISEYSDGFISA 67
Query: 62 GQ--GFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQF 119
G VY V Y+ ++ P + + + +N + GP+ FI I + +F
Sbjct: 68 ENLSGGAVYKVNYQCKIYSPLENTSIIGEIILINPELIIVINGPIKMFIPRELINQN-EF 126
Query: 120 CPNSN 124
N N
Sbjct: 127 DINRN 131
>gi|440294233|gb|ELP87250.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
[Entamoeba invadens IP1]
Length = 158
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%)
Query: 45 VIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL 104
VI VT + I G G VV+ VKY AIV + EV+D V++ V+ G+ + G
Sbjct: 34 VICVTRVIDRKPLRIAEGTGNVVFSVKYEAIVQKLINKEVVDGVISNVSNDGVIVDAGAW 93
Query: 105 SCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTL 163
D QF +N + I++ D++R ++ +GI + ++
Sbjct: 94 KNIHVSFKKVADCQFDEANNCYVDTDKNSGFSIKKGDKVRARLDVVNYHVNGITCMASI 152
>gi|366994608|ref|XP_003677068.1| hypothetical protein NCAS_0F02290 [Naumovozyma castellii CBS 4309]
gi|342302936|emb|CCC70713.1| hypothetical protein NCAS_0F02290 [Naumovozyma castellii CBS 4309]
Length = 222
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F ++ +L ++ G I + I + G ++
Sbjct: 1 MFILSKISDLVRIPPDQFHRDTISSITHELNNKYADKIVPHIGLCITIYDILEVDEGQLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVT-------QVNKVGMFAEI 101
PG G V +RA++F+PF GE++ ++ +V+ +GMF ++
Sbjct: 61 PGDGASYINVTFRALIFKPFVGEIVTGWISKCTAEGIKVSMLGMFNDV 108
>gi|409075416|gb|EKM75796.1| hypothetical protein AGABI1DRAFT_131874 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 569
Score = 41.6 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 10/78 (12%)
Query: 69 PVKYRAIVFRPF-KGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVC 127
PV+ A RP +G +D + +++ ++ + PL I HHS+PT + PNSNP
Sbjct: 202 PVQIYASPKRPLDRGASVDNLASEIGRLSTTS--APL---IRHHSMPTTLSHHPNSNP-- 254
Query: 128 YKSVHGEVVIQEDDEIRL 145
S+ GE + +E D + L
Sbjct: 255 --SITGETLTREPDPMEL 270
>gi|392862351|gb|EAS37009.2| DNA-directed RNA polymerase, partial [Coccidioides immitis RS]
Length = 195
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ + + P F ++ + + G + + GLI
Sbjct: 1 MFILTTISDLVQISPEDFSKLSAVAIEDNINEKYANKVIQNVGLCMGFYDLLESSDGLIG 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
G G V VK+R IVFRPFKGEV+ +T + G+
Sbjct: 61 HGTGLVNVNVKFRLIVFRPFKGEVILGKITSGTEQGI 97
>gi|291243945|ref|XP_002741858.1| PREDICTED: hypothetical protein isoform 1 [Saccoglossus
kowalevskii]
Length = 204
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F +L + + ++L ++ G IA+ I + +
Sbjct: 1 MFVLSEMTDTVRIKPWQFHLKLNDAIAEELNKKLANKVVHNVGLCIALHDITKLEDSYLF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R IVFRPF E+ + ++ G+ +G
Sbjct: 61 PGDGASHTKVCFRYIVFRPFLDEIFIGKIRSCSRDGVHVSLG 102
>gi|48096324|ref|XP_394665.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Apis mellifera]
Length = 203
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L+ + + P F +L + + +L ++ G IA+ I I I
Sbjct: 1 MFVLAELKDTVRIPPAEFKQKLNDAITDELNRKLANKVYLNVGLCIALHDITKIEESYIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVL 85
PG G V +R IVFRPF E+L
Sbjct: 61 PGDGASHTKVIFRYIVFRPFMEEIL 85
>gi|444317941|ref|XP_004179628.1| hypothetical protein TBLA_0C03050 [Tetrapisispora blattae CBS 6284]
gi|387512669|emb|CCH60109.1| hypothetical protein TBLA_0C03050 [Tetrapisispora blattae CBS 6284]
Length = 205
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 3/119 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F + +L + G + + + + G ++
Sbjct: 1 MFILSKISDLVRIPPDQFHRDSISAIMHQLNKRYANKIVPRIGLCVTIYDLLEVDQGQLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQF 119
PG G V +RAI+F+PF GE++ + + G+ LS S IP +M F
Sbjct: 61 PGDGGSYINVTFRAIIFKPFVGEIITGWIAECTNEGIKVS---LSGAFSDIFIPKNMLF 116
>gi|307185496|gb|EFN71480.1| DNA-directed RNA polymerase III subunit RPC8 [Camponotus
floridanus]
Length = 204
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 62/160 (38%), Gaps = 18/160 (11%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L+ + + P F +L + V +L ++ G I + I I I
Sbjct: 1 MFVLAELKDTVRILPSNFKYKLNDVVADELNRKLANKVYKDVGLCIVLHDITKIEESYIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFI---------SHH 111
PG G V +R IVFRP+ E+L V + G+ +G I SH
Sbjct: 61 PGDGASHTKVTFRFIVFRPWIEEILIGKVRSSSSEGVHVTLGFFEDIIIPPHKLQHPSHF 120
Query: 112 SIPTDMQFCPNSNPVCYKSVHG---EVVIQEDDEIRLKIV 148
+ M F YK+ G + ++ D IR ++V
Sbjct: 121 NQTQQMWFW------VYKTEDGTEHNLYMETGDAIRFRVV 154
>gi|340716162|ref|XP_003396570.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Bombus terrestris]
Length = 203
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L+ + + P F +L + + +L ++ G IA+ I I I
Sbjct: 1 MFVLTELKDTVRIPPWEFKRKLNDAITDELNRKLANKVYLDVGLCIALHDITKIEESYIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R IVFRPF E+L + + G+ +G
Sbjct: 61 PGDGASHTKVVFRFIVFRPFMEEILIGKIRSCSVDGVHVTLG 102
>gi|392578056|gb|EIW71184.1| hypothetical protein TREMEDRAFT_42634 [Tremella mesenterica DSM
1558]
Length = 224
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++++ I + P+ F + T+K + + + G ++V I + G +
Sbjct: 1 MFILVAVKDTIPVPPKAFALPPHITIKDAINRKYSNKLVSQKGLGLSVWDILTAEDGKVT 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNK------VGMFAEIGPLSCFISHHS 112
G G + Y V +R ++F PF E++ V +K +G F ++ L F+ +S
Sbjct: 61 WGNGLMYYKVSFRLMLFSPFISEIIVGKVLSSSKKYIRISLGFFRDVYILPAFLPPNS 118
>gi|400596259|gb|EJP64035.1| RNA polymerase III subunit Rpc25 [Beauveria bassiana ARSEF 2860]
Length = 195
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F + ++ + ++ K G I + I GLI
Sbjct: 1 MFILTKISDLVQIAPEDFSKRSIIAIEDNINAKYANKVIQKIGLCICLYDILWTSEGLIG 60
Query: 61 PGQGFV-VYPVKYRAIVFRPFKGEVL 85
G G V V +++R IVFRPFKGEV+
Sbjct: 61 HGTGLVNVNGIEFRMIVFRPFKGEVI 86
>gi|321478047|gb|EFX89005.1| hypothetical protein DAPPUDRAFT_41099 [Daphnia pulex]
Length = 204
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 66/159 (41%), Gaps = 15/159 (9%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF ++ + + F + + + ++L + G IA+ I G I
Sbjct: 1 MFVLALVKQTVRVPSEKFNRDIDQAISEELNLKFANKVVLDVGLCIALWDIIKRGESFIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNK------VGMFAEIGPLSCFISHHSIP 114
PG V++R +VFRPF ++L + +K +G F EI FIS ++
Sbjct: 61 PGDSGHHTKVEFRYVVFRPFMEQILVGRIKNCDKESVQVSLGFFDEI-----FISSENLQ 115
Query: 115 TDMQFCPNSNPVC--YKSVHG--EVVIQEDDEIRLKIVG 149
+ +F Y+S G ++ + +EIR K+V
Sbjct: 116 KNSRFDETEQTWVWEYQSEDGKHDLFMDTGEEIRFKVVA 154
>gi|66362138|ref|XP_628033.1| RPB7 subunit of the RNA polymerase III, OB fold [Cryptosporidium
parvum Iowa II]
gi|46227635|gb|EAK88570.1| RPB7 subunit of the RNA polymerase III, OB fold [Cryptosporidium
parvum Iowa II]
Length = 209
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 74/181 (40%), Gaps = 18/181 (9%)
Query: 2 FYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQP 61
F I L+ ++PR P + ++ ++ + G +I D + I
Sbjct: 30 FSEIHLKDIQNINPRINDPLV--ILRNRINDKYLNKVVKNAGLMIYFVGFDDVDHADIDN 87
Query: 62 GQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCP 121
+G +++ V ++ I FRP+ GEV++ VV + G+ +G F S IP + P
Sbjct: 88 DEGGLLFCVTFKMISFRPYVGEVIEGVVIDSDSTGLTVSLG----FFSDIKIPCNDLREP 143
Query: 122 -----NSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVD-------ASGIFAIGTLMDDYLG 169
N+ + + ++ D IR K+ + S + +G + +D LG
Sbjct: 144 KSIDSNTKIWSWDYENHKLCYLIDSTIRFKVSSVVFNDQSHDNSVSSMVVVGNVQNDGLG 203
Query: 170 L 170
+
Sbjct: 204 M 204
>gi|350396628|ref|XP_003484613.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Bombus impatiens]
Length = 203
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L+ + + P F +L + + +L ++ G IA+ I I I
Sbjct: 1 MFVLAELKDTVRIPPWEFKRKLNDAITDELNRKLANKVYLDVGLCIALHDITKIEESYIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVL 85
PG G V +R IVFRPF E+L
Sbjct: 61 PGDGASHTKVVFRFIVFRPFMEEIL 85
>gi|385805487|ref|YP_005841885.1| DNA-directed RNA polymerase subunit E' [Fervidicoccus fontis
Kam940]
gi|383795350|gb|AFH42433.1| DNA-directed RNA polymerase subunit E' [Fervidicoccus fontis
Kam940]
Length = 158
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 36 GTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKV 95
G + G +I V G I G G + V+ I +P EV++ VT V
Sbjct: 19 GYYDDELGIIIGVEKAKVDPFGKIVHGDGASYHNVEASIISMKPLMHEVVEGFVTDVKDY 78
Query: 96 GMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
G+F IGP+ F+ H S +D +S+ + + +I+ D +R +I+
Sbjct: 79 GLFIRIGPIDGFV-HKSQISDEYVEYDSSREAFILKNSNRIIERGDIVRARIIA 131
>gi|169602221|ref|XP_001794532.1| hypothetical protein SNOG_04106 [Phaeosphaeria nodorum SN15]
gi|160706125|gb|EAT87866.2| hypothetical protein SNOG_04106 [Phaeosphaeria nodorum SN15]
Length = 270
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/147 (18%), Positives = 63/147 (42%), Gaps = 1/147 (0%)
Query: 2 FYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQP 61
F +++ I + P+ F + +K + + G I + + + GLI
Sbjct: 60 FSQTTIQDLIQIKPQDFSKPSAQAIKDVVNEKYANKIVPGIGLCICMWDLLTATEGLIGH 119
Query: 62 GQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLS-CFISHHSIPTDMQFC 120
G G V +++R VFRPF+GE++ + + G+ ++ S F+ + ++ + F
Sbjct: 120 GTGLVNVNIEFRMTVFRPFRGEIIYGRIKSSSPDGIIIDLDFTSEVFVPYQNLFENSSFS 179
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKI 147
+ S E+ + + + + ++
Sbjct: 180 QAEGVWVWNSDGTELFLDKGEPVLFRV 206
>gi|374326193|ref|YP_005084393.1| DNA-directed RNA polymerase subunit E' [Pyrobaculum sp. 1860]
gi|356641462|gb|AET32141.1| DNA-directed RNA polymerase subunit E' [Pyrobaculum sp. 1860]
Length = 191
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 66/148 (44%)
Query: 2 FYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQP 61
F + E + + P FG L + Q+L S EG + G+V+AV + G I
Sbjct: 3 FRLVEAEDYVRIPPTEFGKPLEDIALQQLKSRYEGRVLREVGYVVAVLKAEVGREGKIVF 62
Query: 62 GQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCP 121
G G + + + + P GEV++ VV V ++GM +GP+ FI+ + +
Sbjct: 63 GDGGTYHKAVFTMLTYMPLDGEVVEGVVENVREMGMLVRVGPILGFINKIHVMDEPNIFF 122
Query: 122 NSNPVCYKSVHGEVVIQEDDEIRLKIVG 149
+++ Y + + D +R +I G
Sbjct: 123 DASTKSYIGERTKRRVSVGDVVRARITG 150
>gi|224095057|ref|XP_002197392.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Taeniopygia guttata]
Length = 206
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 45/102 (44%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L E++ ++L ++ G I + I + I
Sbjct: 1 MFVLVEMTDTVRIPPWQFERKLNESIAEELNKKLANKVVYNVGLCICLYDITKLEDSYIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + ++ G+ +G
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGQIKSCSQDGVHVSLG 102
>gi|401624904|gb|EJS42941.1| rpc25p [Saccharomyces arboricola H-6]
Length = 213
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F + +L ++ G I + + ++ G ++
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQF 119
PG G V +RA+VF+PF GE++ +++ G+ LS IP +M F
Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVS---LSGIFDDIFIPQNMLF 116
>gi|410082637|ref|XP_003958897.1| hypothetical protein KAFR_0H03520 [Kazachstania africana CBS 2517]
gi|372465486|emb|CCF59762.1| hypothetical protein KAFR_0H03520 [Kazachstania africana CBS 2517]
Length = 204
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 12/130 (9%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F ++ +L G + V I G ++
Sbjct: 1 MFILSRVNDLVRIPPDQFHRDAVSSITHQLNDRYANKVIPHVGLCVTVYDILEADEGQLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVT-------QVNKVGMFAEIGPLSCFISHHSI 113
PG G V +RA+VF+PF GE++ ++ QV+ +G+F +I FI + +
Sbjct: 61 PGDGSSYVNVTFRALVFKPFVGEIVTGWISKCTAEGIQVSLLGLFDDI-----FIPKNML 115
Query: 114 PTDMQFCPNS 123
F PN
Sbjct: 116 FEGCYFEPND 125
>gi|380018290|ref|XP_003693065.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Apis florea]
Length = 203
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L+ + + P F +L + + +L ++ G IA+ I I I
Sbjct: 1 MFVLAELKDTVRIPPVEFKQKLNDAITDELNRKLANKVYLNVGLCIALHDITKIEESYIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R IVFRPF E+L + + G+ +G
Sbjct: 61 PGDGASHTKVIFRYIVFRPFMEEILIGKIRSCSIDGVHVTLG 102
>gi|67607603|ref|XP_666822.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54657887|gb|EAL36594.1| hypothetical protein Chro.10225 [Cryptosporidium hominis]
Length = 200
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
Query: 2 FYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQP 61
F I L+ ++PR P + ++ ++ + G +I D + I
Sbjct: 21 FSEIHLKDIQNINPRINDPLV--ILRNRINDKYLNKVVKNAGLMIYFVGFDGVDHADIDN 78
Query: 62 GQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCP 121
+G +++ V ++ I FRP+ GEV++ VV + G+ +G F S IP + P
Sbjct: 79 DEGGLLFCVTFKMISFRPYVGEVIEGVVIDSDSTGLTVSLG----FFSDIKIPCNDLREP 134
Query: 122 NS 123
S
Sbjct: 135 KS 136
>gi|323304205|gb|EGA57981.1| Rpc25p [Saccharomyces cerevisiae FostersB]
Length = 212
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 43/97 (44%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F + +L ++ G I + + ++ G ++
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
PG G V +RA+VF+PF GE++ +++ G+
Sbjct: 61 PGDGSSFINVTFRAVVFKPFLGEIVTGWISKCTAEGI 97
>gi|255718171|ref|XP_002555366.1| KLTH0G07546p [Lachancea thermotolerans]
gi|238936750|emb|CAR24929.1| KLTH0G07546p [Lachancea thermotolerans CBS 6340]
Length = 208
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 16/119 (13%)
Query: 21 QLYETVKQKLYSEVEGTCTGK----YGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIV 76
Q + K ++ ++ K G I + + + G ++PG G +RA+V
Sbjct: 17 QFHRHTKAAIFHQLNNKYANKVIPHLGLCITIYDLLEVREGQLKPGDGAAYINTTFRALV 76
Query: 77 FRPFKGEVLDAVVTQ-------VNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCY 128
F+PF GE++ ++Q V+ +G+F +I FI + F P+ N +
Sbjct: 77 FKPFVGEIITGWISQCTAEGIKVSLLGVFDDI-----FIPQKMLFEGCYFSPDDNAWVW 130
>gi|332022469|gb|EGI62776.1| DNA-directed RNA polymerase III subunit RPC8 [Acromyrmex
echinatior]
Length = 205
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 42/102 (41%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L+ + + P F +L + +L ++ G I + + I I
Sbjct: 1 MFVLTELKDTVRIPPSSFKSKLNNVIADELNRKLANKVYKDVGLCITLHDVTKIEESYIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R IVFRP+ E+L + + G+ +G
Sbjct: 61 PGDGASHTKVTFRFIVFRPWMEEILIGKIRSCSPEGVHVTLG 102
>gi|363756270|ref|XP_003648351.1| hypothetical protein Ecym_8251 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891551|gb|AET41534.1| Hypothetical protein Ecym_8251 [Eremothecium cymbalariae
DBVPG#7215]
Length = 210
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F + +L ++ G I V + + G ++
Sbjct: 1 MFILTKISDLVRIPPDQFHRDTASAINHQLNNKYANKVIPHVGLCITVYDLLAADEGQLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQ-------VNKVGMFAEI 101
PG G V +RA+VF+P GE++ ++Q V+ +G+F +I
Sbjct: 61 PGDGASYINVTFRALVFKPLVGEIVTGWISQCTVEGIKVSLLGLFDDI 108
>gi|259147697|emb|CAY80947.1| Rpc25p [Saccharomyces cerevisiae EC1118]
Length = 212
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 43/97 (44%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F + +L ++ G I + + ++ G ++
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
PG G V +RA+VF+PF GE++ +++ G+
Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGI 97
>gi|365984895|ref|XP_003669280.1| hypothetical protein NDAI_0C03770 [Naumovozyma dairenensis CBS 421]
gi|343768048|emb|CCD24037.1| hypothetical protein NDAI_0C03770 [Naumovozyma dairenensis CBS 421]
Length = 225
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F + +L ++ G I V I + G ++
Sbjct: 1 MFILSKISDLVRIPPDQFHRDTLSCITHELNNKYANKIVPHIGLCITVYDILEVDEGQLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVT-------QVNKVGMFAEI 101
PG G V +R ++F+PF GE++ ++ +V+ +GMF +I
Sbjct: 61 PGDGASYISVIFRGLIFKPFVGEIITGWISKCTAEGIKVSLLGMFEDI 108
>gi|323336829|gb|EGA78092.1| Rpc25p [Saccharomyces cerevisiae Vin13]
Length = 212
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 43/97 (44%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F + +L ++ G I + + ++ G ++
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
PG G V +RA+VF+PF GE++ +++ G+
Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGI 97
>gi|112490174|pdb|2CKZ|B Chain B, X-Ray Structure Of Rna Polymerase Iii Subcomplex
C17-C25.
gi|112490176|pdb|2CKZ|D Chain D, X-Ray Structure Of Rna Polymerase Iii Subcomplex C17-C25
Length = 218
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 43/97 (44%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F + +L ++ G I + + ++ G ++
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
PG G V +RA+VF+PF GE++ +++ G+
Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGI 97
>gi|6322705|ref|NP_012778.1| Rpc25p [Saccharomyces cerevisiae S288c]
gi|549722|sp|P35718.1|RPC8_YEAST RecName: Full=DNA-directed RNA polymerase III subunit RPC8;
Short=RNA polymerase III subunit C8; AltName:
Full=DNA-directed RNA polymerase III 25 kDa
polypeptide; AltName: Full=RNA polymerase III subunit
C25
gi|396435|emb|CAA80954.1| unknown function [Saccharomyces cerevisiae]
gi|486247|emb|CAA81985.1| RPC25 [Saccharomyces cerevisiae]
gi|516561|gb|AAA20241.1| RNA polymerase III C25 subunit [Saccharomyces cerevisiae]
gi|151941663|gb|EDN60025.1| RNA polymerase C [Saccharomyces cerevisiae YJM789]
gi|190409694|gb|EDV12959.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Saccharomyces
cerevisiae RM11-1a]
gi|256271085|gb|EEU06184.1| Rpc25p [Saccharomyces cerevisiae JAY291]
gi|285813121|tpg|DAA09018.1| TPA: Rpc25p [Saccharomyces cerevisiae S288c]
gi|323308337|gb|EGA61583.1| Rpc25p [Saccharomyces cerevisiae FostersO]
gi|349579425|dbj|GAA24587.1| K7_Rpc25p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365764539|gb|EHN06061.1| Rpc25p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
gi|392298294|gb|EIW09392.1| Rpc25p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 212
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 43/97 (44%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F + +L ++ G I + + ++ G ++
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
PG G V +RA+VF+PF GE++ +++ G+
Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGI 97
>gi|224005523|ref|XP_002291722.1| RPC25,-like protein to dna-directed RNA polymerase III 25 kDa
polypeptide [Thalassiosira pseudonana CCMP1335]
gi|220972241|gb|EED90573.1| RPC25,-like protein to dna-directed RNA polymerase III 25 kDa
polypeptide [Thalassiosira pseudonana CCMP1335]
Length = 223
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 54 IGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSI 113
IG G++ PG G + V ++ +VFRPF EVL V+ N+ G+ +G F H I
Sbjct: 55 IGDGILVPGDGGAHHQVLFQCLVFRPFVEEVLIGTVSDCNEEGVCVSVG---GFFDHVFI 111
Query: 114 PTDMQFCPN 122
P P+
Sbjct: 112 PAYWMLNPS 120
>gi|344296182|ref|XP_003419788.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Loxodonta africana]
Length = 204
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 45/102 (44%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L +++ ++L ++ G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VFRPF EVL + + G+ +G
Sbjct: 61 PGDGASHTKVHFRYVVFRPFLDEVLIGKIKGCSPEGVHVSLG 102
>gi|301090703|ref|XP_002895556.1| DNA-directed RNA polymerase III subunit RPC8, putative
[Phytophthora infestans T30-4]
gi|262097819|gb|EEY55871.1| DNA-directed RNA polymerase III subunit RPC8, putative
[Phytophthora infestans T30-4]
Length = 228
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 1 MFYHISLEHEILLHPRYFGPQ----LYETVKQKLYSEV---EGTCTGKYGFVIAVTTIDS 53
MF + I + P F L E + +K ++V G C Y FV S
Sbjct: 1 MFVLTRISDVIPVAPELFDADYTQVLIEEIDRKYANKVIADVGLCITLYDFV-------S 53
Query: 54 IGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVL 85
IG + P G V++R +VFRPF GEVL
Sbjct: 54 IGDAFVHPSDGTSHSQVEFRLVVFRPFVGEVL 85
>gi|308500610|ref|XP_003112490.1| hypothetical protein CRE_30699 [Caenorhabditis remanei]
gi|308267058|gb|EFP11011.1| hypothetical protein CRE_30699 [Caenorhabditis remanei]
Length = 234
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 43/113 (38%), Gaps = 16/113 (14%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L + + P +K++L + G I V I IG I
Sbjct: 1 MFILSLLRDTVSIKPHQLSSDQQMVIKKRLNERLANKVVPDLGLCICVYDISEIGDSFIL 60
Query: 61 PGQGFV----------------VYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
PG+G V ++R IVFRPF EV++A V ++ G+
Sbjct: 61 PGEGDCRARVTVFRKMYCFNSKVSDFQFRMIVFRPFVDEVIEAKVIGSSRQGL 113
>gi|213512140|ref|NP_001134466.1| DNA-directed RNA polymerase III subunit RPC8 [Salmo salar]
gi|209733538|gb|ACI67638.1| DNA-directed RNA polymerase III subunit RPC8 [Salmo salar]
Length = 208
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F Q E + ++L ++ + G I + I + I
Sbjct: 1 MFVAVEMVDTVRIPPWNFQRQFNEAIAEELNKKLANKVVYQVGLCICLYDITKLEDSYIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + ++ G+ +G
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILVGKIKYCSQEGVHVSLG 102
>gi|296422646|ref|XP_002840870.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637096|emb|CAZ85061.1| unnamed protein product [Tuber melanosporum]
Length = 194
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 12 LLH--PRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYP 69
LLH P F ++ ++ + G I++ + S+ G+I G V
Sbjct: 10 LLHLPPPTFAHPTATALEDQINEKYANKVVHNIGLCISLYDLSSVSEGMIGQDGGAHVN- 68
Query: 70 VKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
V++R IVFRPFKGEVL ++ G+
Sbjct: 69 VEFRMIVFRPFKGEVLTGRISSATAAGV 96
>gi|46122449|ref|XP_385778.1| hypothetical protein FG05602.1 [Gibberella zeae PH-1]
Length = 199
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F + + ++ + ++ K G I + + GLI
Sbjct: 1 MFILTKIADLVQIAPEDFSKRSIDAIEDNINAKYSNKVIQKIGLCICLYDLHWASEGLIG 60
Query: 61 PGQGFV------VYPVKYRAIVFRPFKGEVL 85
G G V + ++R +VFRPFKGEV+
Sbjct: 61 HGTGLVNVNAKEYFTAEFRMVVFRPFKGEVM 91
>gi|348687463|gb|EGZ27277.1| hypothetical protein PHYSODRAFT_538886 [Phytophthora sojae]
Length = 228
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + I + P F + + +++ + G I + SIG +
Sbjct: 1 MFVLTRISDVIPVAPELFDADYTQVLIEEIDRKYANKVIADVGLCITLYDFVSIGDAFVH 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVL 85
P G V++R +VFRPF GEVL
Sbjct: 61 PSDGTSHSQVEFRLVVFRPFVGEVL 85
>gi|432870759|ref|XP_004071834.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Oryzias latipes]
Length = 214
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F QL E V ++L ++ G I + I + I
Sbjct: 1 MFVLVEMVDTVRIPPWCFHRQLNEAVAEELNKKLANKVVFNVGLCICLYDITKLEDSYIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + ++ G+ +G
Sbjct: 61 PGDGASHTKVHFRFVVFHPFLEEILVGKIKYCSQEGVHVTMG 102
>gi|426194630|gb|EKV44561.1| hypothetical protein AGABI2DRAFT_120670 [Agaricus bisporus var.
bisporus H97]
Length = 564
Score = 39.7 bits (91), Expect = 0.49, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 10/78 (12%)
Query: 69 PVKYRAIVFRPF-KGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVC 127
PV+ A RP +G +D + +++ ++ + PL I HHS+P + PNSNP
Sbjct: 201 PVQIYASPKRPLDRGASVDNLASEIGRLSTTS--APL---IRHHSMPATLSHHPNSNP-- 253
Query: 128 YKSVHGEVVIQEDDEIRL 145
S+ GE + +E D + L
Sbjct: 254 --SITGETLTREPDPMEL 269
>gi|386874922|ref|ZP_10117141.1| DNA-directed RNA polymerase [Candidatus Nitrosopumilus salaria
BD31]
gi|386807285|gb|EIJ66685.1| DNA-directed RNA polymerase [Candidatus Nitrosopumilus salaria
BD31]
Length = 198
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 44/116 (37%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +L + + P FG L + L + E G++I + G +
Sbjct: 1 MFSISTLVDVVRIPPSLFGTTLKKAAVNILKEKYESMINADLGYIIMILDAKVDEMGKMI 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
G G + V++ A+ F P E++ + + G F IGP + + D
Sbjct: 61 AGDGGTFHKVEFEALTFYPKLQEIVQGEIVDITDFGAFVRIGPTDALLHLSQVMDD 116
>gi|254166618|ref|ZP_04873472.1| DNA-directed RNA polymerase [Aciduliprofundum boonei T469]
gi|289596245|ref|YP_003482941.1| DNA-directed RNA polymerase [Aciduliprofundum boonei T469]
gi|197624228|gb|EDY36789.1| DNA-directed RNA polymerase [Aciduliprofundum boonei T469]
gi|289534032|gb|ADD08379.1| DNA-directed RNA polymerase [Aciduliprofundum boonei T469]
Length = 199
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 32 SEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQ 91
+EV+ KY ++ + +++ + G+I PG G V V+++A+ F P EV+ V
Sbjct: 44 NEVKDPAERKY-IIVLILSLEKVDEGIIVPGDGAVYQKVRFKALAFHPELQEVVVGDVVD 102
Query: 92 VNKVGMFAEIGPLSCFISHHSIPTDM 117
V K G F GP+ + I D+
Sbjct: 103 VLKFGAFIRFGPIDGLLHISQIMDDV 128
>gi|254167345|ref|ZP_04874197.1| DNA-directed RNA polymerase [Aciduliprofundum boonei T469]
gi|197623608|gb|EDY36171.1| DNA-directed RNA polymerase [Aciduliprofundum boonei T469]
Length = 199
Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 32 SEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQ 91
+EV+ KY ++ + +++ + G+I PG G V V+++A+ F P EV+ V
Sbjct: 44 NEVKDPAERKY-IIVLILSLEKVDEGIIVPGDGAVYQKVRFKALAFHPELQEVVVGDVVD 102
Query: 92 VNKVGMFAEIGPLSCFISHHSIPTDM 117
V K G F GP+ + I D+
Sbjct: 103 VLKFGAFIRFGPIDGLLHISQIMDDV 128
>gi|407465243|ref|YP_006776125.1| DNA-directed RNA polymerase subunit E' [Candidatus Nitrosopumilus
sp. AR2]
gi|407048431|gb|AFS83183.1| DNA-directed RNA polymerase subunit E' [Candidatus Nitrosopumilus
sp. AR2]
Length = 198
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 44/116 (37%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +L + + P FG L + L + E G++I + G +
Sbjct: 1 MFSISTLVDVVRIPPSLFGTTLKKAAVNILKEKYESMINADLGYIIMILDAKVDEMGKMI 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
G G + V++ A+ F P E++ + + G F IGP + + D
Sbjct: 61 AGDGGTFHKVEFEALTFYPKLQEIVQGEIVDITDFGAFVRIGPTDALLHLSQVMDD 116
>gi|422294115|gb|EKU21415.1| DNA-directed RNA polymerase III subunit RPC8 [Nannochloropsis
gaditana CCMP526]
Length = 220
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 53 SIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHH 111
IG + P G + V +R +VFRPF GEVL V Q ++ G+ +G F+ +
Sbjct: 28 DIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSY 87
Query: 112 SIPTDMQFCPNSN 124
+ T +F P N
Sbjct: 88 LLQTPSEFDPREN 100
>gi|407462897|ref|YP_006774214.1| DNA-directed RNA polymerase subunit E' [Candidatus Nitrosopumilus
koreensis AR1]
gi|407046519|gb|AFS81272.1| DNA-directed RNA polymerase subunit E' [Candidatus Nitrosopumilus
koreensis AR1]
Length = 198
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 44/116 (37%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +L + + P FG L + L + E G++I + G +
Sbjct: 1 MFSISTLVDVVRIPPSLFGTTLKKAAVNILKEKYESMINADLGYIIMILDAKVDEMGKMI 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
G G + V++ A+ F P E++ + + G F IGP + + D
Sbjct: 61 AGDGGTFHRVQFEALTFYPKLQEIVQGEIVDITDFGAFVRIGPTDALLHLSQVMDD 116
>gi|339906094|ref|YP_004732891.1| hypothetical protein WIV_gp108 [Wiseana iridescent virus]
gi|308051965|gb|ADO00452.1| hypothetical protein [Wiseana iridescent virus]
Length = 141
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 10 EILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYP 69
E++L P+Y L ET++ L ++ T K G+ + + + + GQ +V
Sbjct: 13 ELVLLPKYLNSNLSETLRSILINKYPKTYLDK-GYCFNIKVVRILDNKITLSGQ--IVLK 69
Query: 70 VKYRAIVFRPFKGEVLDAVVTQ--VNKVGMFAEIGPLSCFISHHS 112
++++A ++ P G V + + + VNK + EIGPL+ FI+ S
Sbjct: 70 IEFKADIYVPKIGHVFQSELKKGVVNKYH-WVEIGPLTIFINDIS 113
>gi|340345293|ref|ZP_08668425.1| DNA-directed RNA polymerase [Candidatus Nitrosoarchaeum koreensis
MY1]
gi|339520434|gb|EGP94157.1| DNA-directed RNA polymerase [Candidatus Nitrosoarchaeum koreensis
MY1]
Length = 232
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 39/102 (38%)
Query: 15 PRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRA 74
P FG L + L + E + G++I + G + G G + V++ A
Sbjct: 50 PSLFGTALKKAATNILKDKYESMINAELGYIIMILDAKVDEMGKMIAGDGGTFHRVEFEA 109
Query: 75 IVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
+ F P E++ + + G F IGP + + D
Sbjct: 110 LTFYPKLQEIVQGEIVDITDFGAFVRIGPTDALLHLSQVMDD 151
>gi|336368541|gb|EGN96884.1| hypothetical protein SERLA73DRAFT_185115 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381332|gb|EGO22484.1| hypothetical protein SERLADRAFT_473379 [Serpula lacrymans var.
lacrymans S7.9]
Length = 222
Score = 39.3 bits (90), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 27 KQKLYSEVEGTCTGKY----GFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKG 82
+Q L SE+ + G I V + G ++ G G + Y V +R +VFRPF
Sbjct: 23 EQALISEINKKYANRVLHDVGMCICVFDLTEASEGKVRYGDGCLWYKVIFRMVVFRPFAS 82
Query: 83 EVLDAVVTQVNKVGMFAEIG 102
EV+ A V ++ G+ +G
Sbjct: 83 EVILAKVKSSDEDGIRLSVG 102
>gi|161528743|ref|YP_001582569.1| DNA-directed RNA polymerase subunit E' [Nitrosopumilus maritimus
SCM1]
gi|160340044|gb|ABX13131.1| DNA-directed RNA polymerase [Nitrosopumilus maritimus SCM1]
Length = 198
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 44/116 (37%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +L + + P FG L + L + E G++I + G +
Sbjct: 1 MFSISTLVDVVRIPPSLFGTTLKKAAVNILKEKYESMINADLGYIIMILDAKVDEMGKMI 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
G G + V++ A+ F P E++ + + G F IGP + + D
Sbjct: 61 AGDGGTFHRVQFEALTFYPKLQEIVQGEIVDITDFGAFVRIGPTDALLHLSQVMDD 116
>gi|47206295|emb|CAF93183.1| unnamed protein product [Tetraodon nigroviridis]
Length = 251
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F Q+ E V ++L ++ G I + I + I
Sbjct: 1 MFVLVEMVDTVRISPWDFQRQINEAVAEELNKKLANKVVYNVGLCICLYDITKLEDSYIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + ++ G+ +G
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLEEILIGKIKYCSQEGVHVTMG 102
>gi|387219567|gb|AFJ69492.1| DNA-directed RNA polymerase III subunit RPC8 [Nannochloropsis
gaditana CCMP526]
Length = 206
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 53 SIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHH 111
IG + P G + V +R +VFRPF GEVL V Q ++ G+ +G F+ +
Sbjct: 14 DIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSY 73
Query: 112 SIPTDMQFCPNSN 124
+ T +F P N
Sbjct: 74 LLQTPSEFDPREN 86
>gi|50540012|ref|NP_001002476.1| DNA-directed RNA polymerase III subunit RPC8 [Danio rerio]
gi|49903087|gb|AAH76336.1| Zgc:92878 [Danio rerio]
Length = 214
Score = 38.9 bits (89), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 42/102 (41%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F L E V ++L ++ G I + I + I
Sbjct: 1 MFVLVEMRDTVRIPPWSFQRPLNEAVAEELNKKLANKVVYNVGLCICLYDITKLEDSYIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + + G+ +G
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILLGKIKGCSAEGVHVSLG 102
>gi|395540688|ref|XP_003772284.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8
[Sarcophilus harrisii]
Length = 204
Score = 38.9 bits (89), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 45/102 (44%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L +++ ++L ++ G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLYDITKLEDAYVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L V+ + G+ +G
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGVIKGCSPDGVHVSLG 102
>gi|391348227|ref|XP_003748350.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Metaseiulus occidentalis]
Length = 204
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 1 MFYHISLEHEILLHP-RYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTI---DSIGA 56
MF L + + P + G +YE ++Q L ++ G I V S
Sbjct: 1 MFVVSELSDVVRVEPDKLTGKSIYEALRQALNNKFVNKVLLNCGLFIKVLDFLPQSSKTD 60
Query: 57 GLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
I PG G V V +RAIVFRPF EV++ V ++ G+
Sbjct: 61 FHILPGDGAVHKKVYFRAIVFRPFINEVIEGRVRSMSPEGI 101
>gi|412992998|emb|CCO16531.1| predicted protein [Bathycoccus prasinos]
Length = 238
Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 43 GFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVL 85
G V+ + ++SI G+I G G Y V++R +VF PF E+L
Sbjct: 44 GLVVTLYEVNSIKGGIIYAGDGAAHYEVEFRMVVFSPFVNEIL 86
>gi|401840255|gb|EJT43152.1| RPC25-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 212
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 42/97 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F + +L ++ G I + + + G ++
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFTNKIIPNVGLCITIYDLLVVEEGQLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
PG G V +RA+VF+PF GE++ +++ G+
Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGI 97
>gi|365759736|gb|EHN01510.1| Rpc25p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 212
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 42/97 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F + +L ++ G I + + + G ++
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFTNKIIPNVGLCITIYDLLVVEEGQLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
PG G V +RA+VF+PF GE++ +++ G+
Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGI 97
>gi|72021379|ref|XP_796543.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Strongylocentrotus purpuratus]
gi|72148305|ref|XP_795389.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Strongylocentrotus purpuratus]
Length = 203
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 43/102 (42%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F + + + ++L ++ G IA+ I + I
Sbjct: 1 MFVLAEMVDTVRIEPWLFNAKPIDAITEELNKKLANKVVPNVGLCIALHDIVKMEDSHIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + ++ G+ +G
Sbjct: 61 PGDGASHTKVHFRFVVFHPFMDEILIGRIRSCSRDGVHISLG 102
>gi|24475814|ref|NP_612211.1| DNA-directed RNA polymerase III subunit RPC8 isoform a [Homo
sapiens]
gi|65301161|ref|NP_001018060.1| DNA-directed RNA polymerase III subunit RPC8 isoform a [Homo
sapiens]
gi|332859900|ref|XP_001169430.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Pan troglodytes]
gi|397487166|ref|XP_003814678.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Pan paniscus]
gi|397487168|ref|XP_003814679.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 2
[Pan paniscus]
gi|426394612|ref|XP_004063585.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Gorilla gorilla gorilla]
gi|426394614|ref|XP_004063586.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 2
[Gorilla gorilla gorilla]
gi|29428071|sp|Q9Y535.1|RPC8_HUMAN RecName: Full=DNA-directed RNA polymerase III subunit RPC8;
Short=RNA polymerase III subunit C8; AltName:
Full=DNA-directed RNA polymerase III subunit H; AltName:
Full=RNA polymerase III subunit 22.9 kDa subunit;
Short=RPC22.9
gi|24429623|gb|AAM18217.1| RNA polymerase III subunit RPC8 [Homo sapiens]
gi|47678449|emb|CAG30345.1| dJ347H13.5 [Homo sapiens]
gi|56789518|gb|AAH88367.1| Polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Homo
sapiens]
gi|109451158|emb|CAK54440.1| POLR3H [synthetic construct]
gi|109451736|emb|CAK54739.1| POLR3H [synthetic construct]
gi|119580841|gb|EAW60437.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD), isoform
CRA_a [Homo sapiens]
gi|119580843|gb|EAW60439.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD), isoform
CRA_a [Homo sapiens]
gi|119580844|gb|EAW60440.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD), isoform
CRA_a [Homo sapiens]
gi|119580845|gb|EAW60441.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD), isoform
CRA_a [Homo sapiens]
gi|168270638|dbj|BAG10112.1| DNA-directed RNA polymerase III subunit RPC8 [synthetic construct]
gi|254071291|gb|ACT64405.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) protein
[synthetic construct]
gi|254071293|gb|ACT64406.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) protein
[synthetic construct]
gi|410227528|gb|JAA10983.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Pan
troglodytes]
gi|410257006|gb|JAA16470.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Pan
troglodytes]
gi|410300726|gb|JAA28963.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Pan
troglodytes]
gi|410352625|gb|JAA42916.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Pan
troglodytes]
Length = 204
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L +++ ++L ++ G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + + G+ +G
Sbjct: 61 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLG 102
>gi|13359203|dbj|BAB33335.1| KIAA1665 protein [Homo sapiens]
Length = 217
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L +++ ++L ++ G I + I + +
Sbjct: 14 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 73
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + + G+ +G
Sbjct: 74 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLG 115
>gi|307202151|gb|EFN81651.1| DNA-directed RNA polymerase III subunit RPC8 [Harpegnathos
saltator]
Length = 200
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L+ + P F +L + + +L ++ G I + I I +
Sbjct: 1 MFILADLKDTVRTTPNNFKQKLNDVITDELNRKLGNKVYVNVGLCIMLYDITKIEESHVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVL 85
PG G V +R +VFRPF E+L
Sbjct: 61 PGDGASHTNVSFRFVVFRPFMEEIL 85
>gi|302838430|ref|XP_002950773.1| hypothetical protein VOLCADRAFT_74791 [Volvox carteri f.
nagariensis]
gi|300263890|gb|EFJ48088.1| hypothetical protein VOLCADRAFT_74791 [Volvox carteri f.
nagariensis]
Length = 201
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 41/97 (42%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +E +I + P+ + V + G V+ + + I G +
Sbjct: 1 MFIITQIEDQIRVLPQDLQKTPVDAVTAVIEQRFVDKVIPNLGLVVTIYDVLHIEGGFVY 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
P G + V++R +VFRP GE++ + ++ G+
Sbjct: 61 PNDGAAFFKVQFRVVVFRPSVGEIIVGKLKSCSREGL 97
>gi|225719760|gb|ACO15726.1| DNA-directed RNA polymerase III subunit RPC8 [Caligus clemensi]
Length = 203
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 21 QLYETVKQKLYSEVEGTCTGKY----GFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIV 76
QL + + L E+ + K G + + I IG + PG V +R +V
Sbjct: 17 QLNRPLPEALSEEINRKLSNKVVLNVGLAVCLFDILEIGESFLFPGDEASHTRVVFRILV 76
Query: 77 FRPFKGEVLDAVVTQVNKVGMFAEIG 102
FRPF EVL+ + +K G+ +G
Sbjct: 77 FRPFMEEVLNGKIKSCSKDGVQVSLG 102
>gi|449270995|gb|EMC81631.1| DNA-directed RNA polymerase I subunit RPA43, partial [Columba
livia]
Length = 291
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 18/153 (11%)
Query: 11 ILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGA-GLIQPGQGFVVYP 69
+ L PRY G + ++ +L E+ G +A I +G G I QGFV
Sbjct: 15 VALAPRYLG-RKRSGIRAQLDGELLRYSESFQGVPVAYDNIKVVGELGDIYDDQGFVHLN 73
Query: 70 VKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL--SCFISHHSIPTDMQFCPNSNPVC 127
++ ++F P KG+ L VV +V + IG L CF + SIP Q + +
Sbjct: 74 IEADFVIFSPKKGKKLVGVVNKV----APSHIGCLIHGCFNA--SIPKPEQM----SIIQ 123
Query: 128 YKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAI 160
++ E+ ++ DE++ +++ DA+G+F I
Sbjct: 124 WQ----ELGLKIGDELKFRVLHLESDAAGVFFI 152
>gi|74220193|dbj|BAE31279.1| unnamed protein product [Mus musculus]
Length = 204
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 6/161 (3%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L +++ ++L ++ G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQF 119
PG G V +R +VF PF E+L + + G+ +G I S+ +F
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF 120
Query: 120 CPNSNPVCYKSVHGE----VVIQEDDEIRLKIVGTR-VDAS 155
++ GE + + +EIR ++V VD S
Sbjct: 121 DEAEQVWVWEYETGEGAHDLYMDTGEEIRFRVVDESFVDTS 161
>gi|332231333|ref|XP_003264851.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Nomascus leucogenys]
gi|441617712|ref|XP_004088468.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Nomascus
leucogenys]
Length = 204
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L +++ ++L ++ G I + I + +
Sbjct: 1 MFVLVEMVDTVRISPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + + G+ +G
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLG 102
>gi|194037188|ref|XP_001929168.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Sus scrofa]
Length = 204
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L +++ ++L ++ G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + + G+ +G
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLG 102
>gi|149065821|gb|EDM15694.1| polymerase (RNA) III (DNA directed) polypeptide H (predicted),
isoform CRA_b [Rattus norvegicus]
Length = 177
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L +++ ++L ++ G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + + G+ +G
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLG 102
>gi|281340938|gb|EFB16522.1| hypothetical protein PANDA_019485 [Ailuropoda melanoleuca]
Length = 192
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L +++ ++L ++ G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVMYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + + G+ +G
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLG 102
>gi|393795574|ref|ZP_10378938.1| DNA-directed RNA polymerase subunit E' [Candidatus Nitrosoarchaeum
limnia BG20]
Length = 180
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 38/99 (38%)
Query: 18 FGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVF 77
FG L + L + E + G++I + G + G G + V++ A+ F
Sbjct: 2 FGTALKKAATNILKDKYESMINAELGYIIMILDAKVDEMGKMIAGDGGTFHKVEFEALTF 61
Query: 78 RPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
P E++ + + G F IGP + + D
Sbjct: 62 YPKLQEIVQGEIVDITDFGAFVRIGPTDALLHLSQVMDD 100
>gi|347522806|ref|YP_004780376.1| DNA-directed RNA polymerase [Pyrolobus fumarii 1A]
gi|343459688|gb|AEM38124.1| DNA-directed RNA polymerase [Pyrolobus fumarii 1A]
Length = 192
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 2/148 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKY-GFVIAVTTIDSIGAGLI 59
M+ +E + + P F L E + L + EG + +I V +D G I
Sbjct: 1 MYMVARVEDVVRIPPSLFHLPLKEAALRVLRQKYEGRVDRELKAIIITVLNVDVEEMGRI 60
Query: 60 QPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQF 119
PG G + + ++FRP + EV++ V +V + G+F ++GPL +I I
Sbjct: 61 IPGDGGTWHRATFDLLLFRPEQNEVVEGRVVEVVEHGIFVDLGPLDGYIHVSHISQRRVT 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKI 147
+N + + V++ +D +R K+
Sbjct: 121 IDVANGIVIEEGTNR-VLRRNDVVRAKV 147
>gi|116004145|ref|NP_001070430.1| DNA-directed RNA polymerase III subunit RPC8 [Bos taurus]
gi|122136999|sp|Q2T9X1.1|RPC8_BOVIN RecName: Full=DNA-directed RNA polymerase III subunit RPC8;
Short=RNA polymerase III subunit C8; AltName:
Full=DNA-directed RNA polymerase III subunit 22.9 kDa
polypeptide; AltName: Full=DNA-directed RNA polymerase
III subunit H
gi|83405434|gb|AAI11228.1| Polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Bos
taurus]
Length = 204
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L +++ ++L ++ G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIDEELNKKLANKVMYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + + G+ +G
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLG 102
>gi|253743479|gb|EES99859.1| Ribosomal polymerase II subunit RPB7 [Giardia intestinalis ATCC
50581]
Length = 190
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 1 MFYHISLEHEILLHP----RYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTT-IDSI- 54
M +HI + L P ++ + +K++L++ V T +G V+ V DSI
Sbjct: 1 MLFHIEATETVQLRPCDFHEHYATAVIALMKEQLFNGVSHT----FGKVLQVMIHPDSIP 56
Query: 55 GAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNK 94
L+QP G + V Y+AI+ RP + E A V + +
Sbjct: 57 KTPLLQPHTGVATFQVAYKAIIERPMRNERAIAYVESIER 96
>gi|149743078|ref|XP_001502570.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Equus caballus]
Length = 204
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L +++ ++L ++ G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + + G+ +G
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLG 102
>gi|148672601|gb|EDL04548.1| polymerase (RNA) III (DNA directed) polypeptide H, isoform CRA_b
[Mus musculus]
Length = 189
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L +++ ++L ++ G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + + G+ +G
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLG 102
>gi|358341785|dbj|GAA49376.1| DNA-directed RNA polymerase III subunit RPC8 [Clonorchis
sinensis]
Length = 307
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF LE +++HP+YFG L ET++ +L + K G I++ + + I
Sbjct: 11 MFILAKLEDTVVIHPKYFGTDLKETIEHELNARFANKLVYKVGLCISLWDLLEVQESFIS 70
Query: 61 PGQG 64
G
Sbjct: 71 DVDG 74
>gi|296486979|tpg|DAA29092.1| TPA: DNA-directed RNA polymerase III subunit RPC8 [Bos taurus]
gi|440893626|gb|ELR46323.1| DNA-directed RNA polymerase III subunit RPC8 [Bos grunniens mutus]
Length = 204
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L +++ ++L ++ G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + + G+ +G
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLG 102
>gi|426225828|ref|XP_004007063.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Ovis aries]
Length = 204
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L +++ ++L ++ G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + + G+ +G
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLG 102
>gi|308162011|gb|EFO64440.1| Ribosomal polymerase II subunit RPB7 [Giardia lamblia P15]
Length = 190
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 1 MFYHISLEHEILLHP----RYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTT-IDSI- 54
M +HI + L P ++ + +K++L++ V T +G V+ V DSI
Sbjct: 1 MLFHIEATETVQLRPCDFHEHYATAVIALMKEQLFNGVSHT----FGKVLQVMIHPDSIP 56
Query: 55 GAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNK 94
L+QP G + V Y+AI+ RP + E A V + +
Sbjct: 57 KTPLLQPHTGVATFQVAYKAIIERPMRNERAVAYVESIER 96
>gi|27229271|ref|NP_084505.2| DNA-directed RNA polymerase III subunit RPC8 [Mus musculus]
gi|187937020|ref|NP_001120767.1| DNA-directed RNA polymerase III subunit RPC8 [Rattus norvegicus]
gi|29427995|sp|Q9D2C6.2|RPC8_MOUSE RecName: Full=DNA-directed RNA polymerase III subunit RPC8;
AltName: Full=DNA-directed RNA polymerase III subunit H;
AltName: Full=RNA polymerase III subunit C7
gi|14789799|gb|AAH10793.1| Polymerase (RNA) III (DNA directed) polypeptide H [Mus musculus]
gi|26387053|dbj|BAB31893.2| unnamed protein product [Mus musculus]
gi|148672603|gb|EDL04550.1| polymerase (RNA) III (DNA directed) polypeptide H, isoform CRA_d
[Mus musculus]
gi|149065818|gb|EDM15691.1| polymerase (RNA) III (DNA directed) polypeptide H (predicted),
isoform CRA_a [Rattus norvegicus]
gi|149065819|gb|EDM15692.1| polymerase (RNA) III (DNA directed) polypeptide H (predicted),
isoform CRA_a [Rattus norvegicus]
gi|149065820|gb|EDM15693.1| polymerase (RNA) III (DNA directed) polypeptide H (predicted),
isoform CRA_a [Rattus norvegicus]
gi|149065822|gb|EDM15695.1| polymerase (RNA) III (DNA directed) polypeptide H (predicted),
isoform CRA_a [Rattus norvegicus]
gi|187469207|gb|AAI67088.1| Polr3h protein [Rattus norvegicus]
Length = 204
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L +++ ++L ++ G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + + G+ +G
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLG 102
>gi|410965705|ref|XP_003989382.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Felis catus]
Length = 204
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L +++ ++L ++ G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + + G+ +G
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLG 102
>gi|348569566|ref|XP_003470569.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like [Cavia
porcellus]
Length = 204
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L +++ ++L ++ G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFDRKLNDSIAEELNKKLANKVVYNVGLCICLFDITRLEDSYVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + + G+ +G
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLG 102
>gi|355712777|gb|AES04462.1| polymerase III polypeptide H [Mustela putorius furo]
Length = 203
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L +++ ++L ++ G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + + G+ +G
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLG 102
>gi|327272738|ref|XP_003221141.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Anolis carolinensis]
Length = 206
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 37/85 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L + + ++L ++ G I + I + I
Sbjct: 1 MFVLVEMTDTVRIPPWQFERKLNDAITEELNKKLANKVVYNVGLCICLYDITKLEDSYIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVL 85
PG G V +R +VF PF E+L
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEIL 85
>gi|118576156|ref|YP_875899.1| DNA-directed RNA polymerase, subunit E' [Cenarchaeum symbiosum A]
gi|118194677|gb|ABK77595.1| DNA-directed RNA polymerase, subunit E' [Cenarchaeum symbiosum A]
Length = 244
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/106 (20%), Positives = 40/106 (37%)
Query: 11 ILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPV 70
+ + P FG L + L + E G++I + G + G G + V
Sbjct: 39 VRIPPSLFGTTLKKAAINILKEKYESMINADLGYIIMILDAKVEEMGKMIAGDGGTFHKV 98
Query: 71 KYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
++ A+ F P E++ + + G F IGP + + D
Sbjct: 99 EFNALTFYPKLQEIIQGEIVDITDFGAFVRIGPTDALLHLSQVMDD 144
>gi|410925771|ref|XP_003976353.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Takifugu rubripes]
Length = 215
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 43/102 (42%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F L E + ++L ++ G I + + + I
Sbjct: 1 MFVLVEMVDTVRIPPWDFQRPLNEAIAEELNKKLANKVVYNVGLCICLYDVTKLEDSYIF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + ++ G+ +G
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLEEILTGKIKYCSQEGVHVTMG 102
>gi|301787829|ref|XP_002929328.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Ailuropoda melanoleuca]
Length = 204
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L +++ ++L ++ G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVMYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + + G+ +G
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLG 102
>gi|240848647|ref|NP_001155474.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)-like
[Acyrthosiphon pisum]
gi|239788882|dbj|BAH71098.1| ACYPI002394 [Acyrthosiphon pisum]
gi|239788884|dbj|BAH71099.1| ACYPI002394 [Acyrthosiphon pisum]
Length = 203
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF E + + P + + L S + G +++ I IG +I
Sbjct: 1 MFIVSEFEEVVKVQPTHLEDDQMSRIIIHLNSMLANKVVMDVGLCLSLFDILEIGDSIIY 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVL 85
P +G V++R +VFRPF E+L
Sbjct: 61 PSEGAYFSKVRFRFVVFRPFVEEIL 85
>gi|388453623|ref|NP_001253541.1| DNA-directed RNA polymerase III subunit RPC8 [Macaca mulatta]
gi|402884366|ref|XP_003905657.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Papio
anubis]
gi|90077470|dbj|BAE88415.1| unnamed protein product [Macaca fascicularis]
gi|355563711|gb|EHH20273.1| hypothetical protein EGK_03090 [Macaca mulatta]
gi|355785028|gb|EHH65879.1| hypothetical protein EGM_02735 [Macaca fascicularis]
gi|380810200|gb|AFE76975.1| DNA-directed RNA polymerase III subunit RPC8 isoform a [Macaca
mulatta]
gi|383416259|gb|AFH31343.1| DNA-directed RNA polymerase III subunit RPC8 isoform a [Macaca
mulatta]
gi|384945610|gb|AFI36410.1| DNA-directed RNA polymerase III subunit RPC8 isoform a [Macaca
mulatta]
Length = 204
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L +++ ++L ++ G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + + G+ +G
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLG 102
>gi|291000977|ref|XP_002683055.1| predicted protein [Naegleria gruberi]
gi|284096684|gb|EFC50311.1| predicted protein [Naegleria gruberi]
Length = 196
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + ++ +++ P F + V+ +++ + G +++ SIG I
Sbjct: 1 MFVTVVIKDTLIIKPERFKKDIVTAVEDEIHMKYSNKILPDVGLCVSIYDFISIGDPHIY 60
Query: 61 PGQ-GFVVYPVKYRAIVFRPFKGEVL 85
P Q G +R IVF+PF GE++
Sbjct: 61 PNQQGNYFVEASFRLIVFKPFVGEII 86
>gi|403282911|ref|XP_003932877.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Saimiri
boliviensis boliviensis]
Length = 204
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L +++ ++L ++ G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + + G+ +G
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLG 102
>gi|73968962|ref|XP_849136.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Canis lupus familiaris]
Length = 204
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L +++ ++L ++ G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYSVGLCICLFDITRLEDAYVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + + G+ +G
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGRIKGCSPEGVHVSLG 102
>gi|417414291|gb|JAA53443.1| Putative dna-directed rna polymerase iii subunit rpc8, partial
[Desmodus rotundus]
Length = 192
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L +++ ++L ++ G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDSYVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + + G+ +G
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLG 102
>gi|328853074|gb|EGG02215.1| hypothetical protein MELLADRAFT_72828 [Melampsora larici-populina
98AG31]
Length = 240
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF L+ I + R FG + ++Q++ + G + + I S G +
Sbjct: 1 MFVLSHLKDTIRVLARDFGRDRAKVLEQEINRKYANKVLPDVGLCLCLFNIVSASEGKVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
G G + + V++ VFRPF GE L +V + G+
Sbjct: 61 YGDGCLYHLVEFTLAVFRPFIGESLVGIVKSSSPAGI 97
>gi|351708339|gb|EHB11258.1| DNA-directed RNA polymerase III subunit RPC8 [Heterocephalus
glaber]
Length = 204
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 43/102 (42%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F L +++ ++L ++ G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFDRNLNDSIAEELNKKLANKVLYSVGLCICLFDITRLEDSYVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + + G+ +G
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSSEGVHVSLG 102
>gi|384485222|gb|EIE77402.1| hypothetical protein RO3G_02106 [Rhizopus delemar RA 99-880]
Length = 120
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 40/102 (39%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +E + + P F + + L + G I V I ++ G I
Sbjct: 1 MFVLSEVEDIVKIVPNDFKKEKINAITDVLNEKYANKVVQDVGHCICVHDILNVSEGFIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
G V +R +VFRPF GE+L + + G+ +G
Sbjct: 61 YLDGCSYVKVTFRLVVFRPFIGEILIGKIKSCSPAGVVVTMG 102
>gi|156098288|ref|XP_001615176.1| RNA polymerase Rpb7, N-terminal domain containing protein
[Plasmodium vivax Sal-1]
gi|148804050|gb|EDL45449.1| RNA polymerase Rpb7, N-terminal domain containing protein
[Plasmodium vivax]
Length = 186
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 75/186 (40%), Gaps = 21/186 (11%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +E I + P + +L ++ + ++ G + + I + I
Sbjct: 1 MFSLFRIEDVIKIEPHFMEEELKNVIEFLIRAKYVDKVLQNVGLCVGLYDILEVKNREIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG-----PLSCFISHHSIPT 115
G G + + V +R + F+PF+ E+++ V + G+ IG ++C
Sbjct: 61 KGTGEIRFDVIFRLVYFQPFENEIIEGFVKNSDSNGIIISIGFFENIRVNCANLREPKEF 120
Query: 116 DMQFCPNSNPVCYKSVHG-EVVIQEDDEIRLKIVGT--------RVDAS--GIFAIGTLM 164
DM+ Y + G + +D+ IR++++ T R D + + GT+
Sbjct: 121 DME-----KKEWYWTFEGIKFFYTKDELIRVRVLDTYFSDPNEMRKDETTPSMSITGTVQ 175
Query: 165 DDYLGL 170
D LGL
Sbjct: 176 QDGLGL 181
>gi|444723804|gb|ELW64434.1| DNA-directed RNA polymerase III subunit RPC8 [Tupaia chinensis]
Length = 201
Score = 35.8 bits (81), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 38/85 (44%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L +++ ++L ++ G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYSVGLCICLFDITKLEDAYVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVL 85
PG G V +R +VF PF E+L
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEIL 85
>gi|134116478|ref|XP_773193.1| hypothetical protein CNBJ1880 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255814|gb|EAL18546.1| hypothetical protein CNBJ1880 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 199
Score = 35.8 bits (81), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Query: 43 GFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
G ++V I + G + G G + Y V +R ++F PF GEV+ V K + +G
Sbjct: 14 GLALSVFDILTAEDGKVTWGNGLMYYKVSFRLMLFAPFVGEVIVGRVLSTTKTYIRVSLG 73
Query: 103 PL-SCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQED 140
+I +P + + P + ++ E + ++
Sbjct: 74 FFQDIYIVPSLLPPNSAYDPQQKAFFWVAIDDESTLTQE 112
>gi|221055818|ref|XP_002259047.1| RNA polymerase Rpb7 [Plasmodium knowlesi strain H]
gi|193809118|emb|CAQ39820.1| RNA polymerase Rpb7, putative [Plasmodium knowlesi strain H]
Length = 186
Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/102 (20%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF +E I + P + +L ++ + ++ G + + I + I
Sbjct: 1 MFSLFRIEDVIKIEPHFMEEELKNVIEFLIRAKYVDKVLQNVGLCVGLYDILEVKNREIL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
G G + + V +R + F+PF+ E+++ V + G+ IG
Sbjct: 61 KGTGEIRFDVIFRLVYFQPFENEIIEGFVKNSDSNGIIISIG 102
>gi|449492550|ref|XP_002190396.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA43 [Taeniopygia
guttata]
Length = 296
Score = 35.4 bits (80), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 18/158 (11%)
Query: 6 SLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGA-GLIQPGQG 64
S + L PR+ G + ++ +L +E+ G +A I +G G I QG
Sbjct: 13 SRRRHVALPPRFLGRK-RSGIRAQLDAELLRYSESLQGVPVAYDNIKVVGELGDIYDDQG 71
Query: 65 FVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL--SCFISHHSIPTDMQFCPN 122
F+ V+ I+F P KG+ L ++ +V + IG L CF + SIP Q
Sbjct: 72 FIHLDVEADFIIFSPKKGKKLVGIINKV----APSHIGCLIHGCF--NASIPKPEQM--- 122
Query: 123 SNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAI 160
+ V ++ E+ ++ DE++ +++ D +G+F I
Sbjct: 123 -SIVQWQ----ELGLKIGDELKFQVLHLDSDTAGVFFI 155
>gi|431900039|gb|ELK07974.1| DNA-directed RNA polymerase III subunit RPC8 [Pteropus alecto]
Length = 204
Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 43/102 (42%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F +L +++ ++L ++ G I + I + +
Sbjct: 1 MFVLVEMVDTVRTPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + + G+ +G
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLG 102
>gi|58259847|ref|XP_567336.1| hypothetical protein CNJ01580 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57229386|gb|AAW45819.1| hypothetical protein CNJ01580 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 184
Score = 35.4 bits (80), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
Query: 43 GFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNK------VG 96
G ++V I + G + G G + Y V +R ++F PF GEV+ V K +G
Sbjct: 14 GLALSVFDILTAEDGKVTWGNGLMYYKVSFRLMLFAPFVGEVIVGRVLSTTKTYIRVSLG 73
Query: 97 MFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQED 140
F +I +I +P + + P + ++ E + ++
Sbjct: 74 FFQDI-----YIVPSLLPPNSAYDPQQKAFFWVAIDDESTLTQE 112
>gi|66828551|ref|XP_647629.1| RNA polymerase I subunit [Dictyostelium discoideum AX4]
gi|74859190|sp|Q55FA4.1|RPA43_DICDI RecName: Full=Probable DNA-directed RNA polymerase I subunit RPA43
gi|60475617|gb|EAL73552.1| RNA polymerase I subunit [Dictyostelium discoideum AX4]
Length = 356
Score = 35.4 bits (80), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 73 RAIVFRPFKGEVLDAVVTQVNKVGM-FAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSV 131
+ +VF+PFK ++L+ VV +V+ + G +S I +IP F +SN K
Sbjct: 90 KFLVFKPFKDQILNGVVKRVSTTHISLLVFGTISASIPKSNIPKSFAFDHSSNMFMNKQT 149
Query: 132 HGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMD 165
+ + +I K++ D I G + D
Sbjct: 150 KATISV--GTKIAFKVIDVSADRHNIGIQGDMTD 181
>gi|395753475|ref|XP_002831233.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Pongo
abelii]
Length = 239
Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 38/85 (44%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L +++ ++L ++ G I + I + +
Sbjct: 30 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 89
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVL 85
PG G V +R +VF PF E+L
Sbjct: 90 PGDGASHTKVHFRYVVFHPFLDEIL 114
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.143 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,732,712,383
Number of Sequences: 23463169
Number of extensions: 108068772
Number of successful extensions: 201468
Number of sequences better than 100.0: 892
Number of HSP's better than 100.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 200209
Number of HSP's gapped (non-prelim): 895
length of query: 170
length of database: 8,064,228,071
effective HSP length: 130
effective length of query: 40
effective length of database: 9,308,983,397
effective search space: 372359335880
effective search space used: 372359335880
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 71 (32.0 bits)