BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13107
(170 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C35|B Chain B, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
pdb|2C35|D Chain D, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
pdb|2C35|F Chain F, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
pdb|2C35|H Chain H, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
Length = 172
Score = 298 bits (762), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 139/170 (81%), Positives = 159/170 (93%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CYK++ ++VIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 170
>pdb|3H0G|G Chain G, Rna Polymerase Ii From Schizosaccharomyces Pombe
pdb|3H0G|S Chain S, Rna Polymerase Ii From Schizosaccharomyces Pombe
Length = 172
Score = 182 bits (463), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 90/172 (52%), Positives = 123/172 (71%), Gaps = 6/172 (3%)
Query: 2 FYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAV---TTIDSIGAGL 58
F+ L I LHP YFGP++ + +K KL ++VEGTC+G+YG++I V TID I G
Sbjct: 3 FFLKELSLTISLHPSYFGPRMQDYLKAKLLADVEGTCSGQYGYIICVLDSNTID-IDKGR 61
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
+ PGQGF + VKYRA+++RPF+GEV+DA+VT VNK+G FA IGPL+ F+S H +P DM+
Sbjct: 62 VVPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMK 121
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
F P +NP Y + VI++ +RLKIVGTR DA+ IFAI T+ +DYLG+
Sbjct: 122 FDPTANPPNYSG--EDQVIEKGSNVRLKIVGTRTDATEIFAIATMKEDYLGV 171
>pdb|2B8K|G Chain G, 12-Subunit Rna Polymerase Ii
Length = 215
Score = 142 bits (359), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 104/171 (60%), Gaps = 4/171 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIG--AGL 58
MF+ L I LHP +FGP++ + +K KL EVEG+CTGK+G+++ V D+I G
Sbjct: 1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGR 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
I P G + VKYRA+VF+PFKGEV+D V ++ G ++GP+ F++ H +P D+
Sbjct: 61 ILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLT 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
F SNP Y+S E VI IR+KI G S I AIG++ +DYLG
Sbjct: 121 FNAGSNPPSYQS--SEDVITIKSRIRVKIEGCISQVSSIHAIGSIKEDYLG 169
>pdb|1NT9|G Chain G, Complete 12-Subunit Rna Polymerase Ii
pdb|1PQV|G Chain G, Rna Polymerase Ii-Tfiis Complex
pdb|1WCM|G Chain G, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
pdb|1Y1W|G Chain G, Complete Rna Polymerase Ii Elongation Complex
pdb|1Y77|G Chain G, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
pdb|1Y1V|G Chain G, Refined Rna Polymerase Ii-tfiis Complex
pdb|1Y1Y|G Chain G, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
pdb|1Y14|B Chain B, Crystal Structure Of Yeast Subcomplex Of Rpb4 And Rpb7
pdb|1Y14|D Chain D, Crystal Structure Of Yeast Subcomplex Of Rpb4 And Rpb7
pdb|2B63|G Chain G, Complete Rna Polymerase Ii-Rna Inhibitor Complex
pdb|2JA5|G Chain G, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
pdb|2JA6|G Chain G, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
pdb|2JA7|G Chain G, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
pdb|2JA7|S Chain S, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
pdb|2JA8|G Chain G, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
pdb|2R7Z|G Chain G, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
pdb|2R92|G Chain G, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
pdb|2R93|G Chain G, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
pdb|2VUM|G Chain G, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
pdb|3FKI|G Chain G, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
pdb|3H3V|H Chain H, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
pdb|3HOU|G Chain G, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
pdb|3HOU|S Chain S, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
pdb|3HOV|G Chain G, Complete Rna Polymerase Ii Elongation Complex Ii
pdb|3HOW|G Chain G, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
pdb|3HOX|G Chain G, Complete Rna Polymerase Ii Elongation Complex V
pdb|3HOY|G Chain G, Complete Rna Polymerase Ii Elongation Complex Vi
pdb|3HOZ|G Chain G, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
pdb|3I4M|G Chain G, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
pdb|3I4N|G Chain G, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
pdb|3K1F|G Chain G, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
pdb|3PO2|G Chain G, Arrested Rna Polymerase Ii Elongation Complex
pdb|3PO3|G Chain G, Arrested Rna Polymerase Ii Reactivation Intermediate
pdb|3QT1|G Chain G, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
pdb|3J0K|G Chain G, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
pdb|4A3C|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
pdb|4A3B|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
pdb|4A3D|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
pdb|4A3E|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3F|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3J|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
pdb|4A3K|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
pdb|4A3L|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3M|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3G|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
pdb|4A3I|G Chain G, Rna Polymerase Ii Binary Complex With Dna
pdb|4A93|G Chain G, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
pdb|4BBR|G Chain G, Structure Of Rna Polymerase Ii-tfiib Complex
pdb|4BBS|G Chain G, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
Length = 171
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 104/171 (60%), Gaps = 4/171 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIG--AGL 58
MF+ L I LHP +FGP++ + +K KL EVEG+CTGK+G+++ V D+I G
Sbjct: 1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGR 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
I P G + VKYRA+VF+PFKGEV+D V ++ G ++GP+ F++ H +P D+
Sbjct: 61 ILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLT 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
F SNP Y+S E VI IR+KI G S I AIG++ +DYLG
Sbjct: 121 FNAGSNPPSYQS--SEDVITIKSRIRVKIEGCISQVSSIHAIGSIKEDYLG 169
>pdb|1GO3|E Chain E, Structure Of An Archeal Homolog Of The Eukaryotic Rna
Polymerase Ii Rpb4RPB7 COMPLEX
pdb|1GO3|M Chain M, Structure Of An Archeal Homolog Of The Eukaryotic Rna
Polymerase Ii Rpb4RPB7 COMPLEX
Length = 187
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 3/156 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + + + + P FG L ETVK+ L + EG GFV+++ + IG G +
Sbjct: 1 MYKILEIADVVKVPPEEFGKDLKETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGEGKVV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
G G +PV + +V+ P E+++ V V + G F +GPL I I D + +
Sbjct: 61 HGDGSAYHPVVFETLVYIPEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSY 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDAS 155
P + K V++ D +R +IV + A
Sbjct: 121 DPKREAIIGKETGK--VLEIGDYVRARIVAISLKAE 154
>pdb|3AYH|B Chain B, Crystal Structure Of The C1725 SUBCOMPLEX FROM S. POMBE
RNA Polymerase Iii
Length = 203
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 15/158 (9%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF I +HP F E + ++++ + G I V IG G+I+
Sbjct: 1 MFLLSRFSDIISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQF- 119
G G V +R I+FRPF+GEV+ + ++ G+ I F IP DM F
Sbjct: 61 YGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEEGIRVTIS----FFDDIFIPKDMLFD 116
Query: 120 -C---PNSNPVCYK------SVHGEVVIQEDDEIRLKI 147
C P+ +K S E+ D+EIR +I
Sbjct: 117 PCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQI 154
>pdb|2Y0S|E Chain E, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|2Y0S|T Chain T, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|4AYB|E Chain E, Rnap At 3.2ang
pdb|4B1O|E Chain E, Archaeal Rnap-Dna Binary Complex At 4.32ang
pdb|4B1P|T Chain T, Archaeal Rnap-Dna Binary Complex At 4.32ang
Length = 180
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 1/156 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ I + + P FG L E +L + + G V+A+ + + G++
Sbjct: 1 MYKLIKARSIVRIPPNEFGKPLNEIALNELRQQYQEKILKDLGLVLAILNVKTSEEGMLV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + V++ I + P EV++ V QV+ G+F +GP+ + I D
Sbjct: 61 FGDGATYHEVEFDMITYVPVVQEVVEGEVLQVDNYGVFVNLGPMDGLVHISQITDDTLKY 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASG 156
N + + + VIQ+ D++R +++ +G
Sbjct: 121 DNVRGIIFGE-KSKKVIQKGDKVRARVISVASTVTG 155
>pdb|2PMZ|E Chain E, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|2PMZ|T Chain T, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|3HKZ|E Chain E, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
pdb|3HKZ|Q Chain Q, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
Length = 180
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 1/156 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ I + + P FG L E +L + + G V+A+ + + G++
Sbjct: 1 MYKLIKARSIVRIPPNEFGKPLNEIALNELRQQYQEKILKDLGLVLAILNVKTSEEGILV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + V++ I + P EV++ V QV+ G+F +GP+ + I D
Sbjct: 61 FGDGATYHEVEFDMITYVPVVQEVVEGEVLQVDNYGIFVNLGPMDGLVHISQITDDTLKY 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASG 156
N + + + VIQ+ D++R +++ +G
Sbjct: 121 DNVRGIIFGE-KSKKVIQKGDKVRARVISVASTVTG 155
>pdb|2WAQ|E Chain E, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|E Chain E, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|T Chain T, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
Length = 180
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 1/156 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ I + + P FG L E +L + + G V+A+ + + G++
Sbjct: 1 MYKLIKARSIVRIPPNEFGKPLNEIALNELRQQYQEKILKDLGLVLAILNVKTSEEGILV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + V++ I + P EV++ V QV+ G+F +GP+ + I D
Sbjct: 61 FGDGATYHEVEFDMITYVPVVQEVVEGEVLQVDNYGIFVNLGPMDGLVHISQITDDTLKY 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASG 156
N + + + VIQ+ D++R +++ +G
Sbjct: 121 DNVRGIIFGE-KSKKVIQKGDKVRARVISVASTVTG 155
>pdb|2CKZ|B Chain B, X-Ray Structure Of Rna Polymerase Iii Subcomplex
C17-C25.
pdb|2CKZ|D Chain D, X-Ray Structure Of Rna Polymerase Iii Subcomplex C17-C25
Length = 218
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 43/97 (44%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F + +L ++ G I + + ++ G ++
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
PG G V +RA+VF+PF GE++ +++ G+
Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGI 97
>pdb|1IDU|A Chain A, Crystal Structure Of The Peroxide Form Of The Vanadium-
Containing Chloroperoxidase From Curvularia Inaequalis
Length = 609
Score = 28.9 bits (63), Expect = 1.5, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 132 HGEVVIQEDDEIRLKIVGTRVDASGIFAIG 161
+G V Q ++IR GTR D G+F IG
Sbjct: 522 NGATVFQNVEDIRYTTRGTREDEEGLFPIG 551
>pdb|1VNG|A Chain A, Chloroperoxidase From The Fungus Curvularia Inaequalis:
Mutant H404a
Length = 609
Score = 28.9 bits (63), Expect = 1.5, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 132 HGEVVIQEDDEIRLKIVGTRVDASGIFAIG 161
+G V Q ++IR GTR D G+F IG
Sbjct: 522 NGATVFQNVEDIRYTTRGTREDEEGLFPIG 551
>pdb|1VNH|A Chain A, Chloroperoxidase From The Fungus Curvularia Inaequalis:
Mutant H496a
Length = 609
Score = 28.9 bits (63), Expect = 1.5, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 132 HGEVVIQEDDEIRLKIVGTRVDASGIFAIG 161
+G V Q ++IR GTR D G+F IG
Sbjct: 522 NGATVFQNVEDIRYTTRGTREDEEGLFPIG 551
>pdb|1IDQ|A Chain A, Crystal Structure Of Native Vanadium-Containing
Chloroperoxidase From Curvularia Inaequalis
pdb|1VNC|A Chain A, Chloroperoxidase From The Fungus Curvularia Inaequalis
pdb|1VNI|A Chain A, Chloroperoxidase From The Fungus Curvularia Inaequalis:
Recombinant Holo-Chloroperoxidase
pdb|1VNS|A Chain A, Recombinant Apo-chloroperoxidase From Curvularia
Inaequalis
Length = 609
Score = 28.9 bits (63), Expect = 1.5, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 132 HGEVVIQEDDEIRLKIVGTRVDASGIFAIG 161
+G V Q ++IR GTR D G+F IG
Sbjct: 522 NGATVFQNVEDIRYTTRGTREDEEGLFPIG 551
>pdb|1VNE|A Chain A, Chloroperoxidase From The Fungus Curvularia Inaequalis:
Mutant D292a
Length = 609
Score = 28.9 bits (63), Expect = 1.5, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 132 HGEVVIQEDDEIRLKIVGTRVDASGIFAIG 161
+G V Q ++IR GTR D G+F IG
Sbjct: 522 NGATVFQNVEDIRYTTRGTREDEEGLFPIG 551
>pdb|1VNF|A Chain A, Chloroperoxidase From The Fungus Curvularia Inaequalis:
Mutant R360a
Length = 609
Score = 28.9 bits (63), Expect = 1.5, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 132 HGEVVIQEDDEIRLKIVGTRVDASGIFAIG 161
+G V Q ++IR GTR D G+F IG
Sbjct: 522 NGATVFQNVEDIRYTTRGTREDEEGLFPIG 551
>pdb|3BB0|A Chain A, Crystal Structure Of A Trapped Phosphate-Intermediate In
Vanadium Apochloroperoxidase Catalyzing A
Dephosphorylation Reaction
Length = 609
Score = 28.5 bits (62), Expect = 1.8, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 132 HGEVVIQEDDEIRLKIVGTRVDASGIFAIG 161
+G V Q ++IR GTR D G+F IG
Sbjct: 522 NGATVFQNVEDIRYTTRGTREDREGLFPIG 551
>pdb|2QTX|A Chain A, Crystal Structure Of An Hfq-Like Protein From
Methanococcus Jannaschii
pdb|2QTX|B Chain B, Crystal Structure Of An Hfq-Like Protein From
Methanococcus Jannaschii
pdb|2QTX|C Chain C, Crystal Structure Of An Hfq-Like Protein From
Methanococcus Jannaschii
pdb|2QTX|D Chain D, Crystal Structure Of An Hfq-Like Protein From
Methanococcus Jannaschii
pdb|2QTX|E Chain E, Crystal Structure Of An Hfq-Like Protein From
Methanococcus Jannaschii
pdb|2QTX|F Chain F, Crystal Structure Of An Hfq-Like Protein From
Methanococcus Jannaschii
pdb|2QTX|G Chain G, Crystal Structure Of An Hfq-Like Protein From
Methanococcus Jannaschii
pdb|2QTX|H Chain H, Crystal Structure Of An Hfq-Like Protein From
Methanococcus Jannaschii
pdb|2QTX|I Chain I, Crystal Structure Of An Hfq-Like Protein From
Methanococcus Jannaschii
pdb|2QTX|J Chain J, Crystal Structure Of An Hfq-Like Protein From
Methanococcus Jannaschii
pdb|2QTX|K Chain K, Crystal Structure Of An Hfq-Like Protein From
Methanococcus Jannaschii
pdb|2QTX|L Chain L, Crystal Structure Of An Hfq-Like Protein From
Methanococcus Jannaschii
Length = 71
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 81 KGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSI 113
GEVLDA VT V+ + ++G + + H+I
Sbjct: 34 NGEVLDAEVTGVSNYEIMVKVGDRNLLVFKHAI 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.143 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,281,848
Number of Sequences: 62578
Number of extensions: 209278
Number of successful extensions: 389
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 365
Number of HSP's gapped (non-prelim): 19
length of query: 170
length of database: 14,973,337
effective HSP length: 92
effective length of query: 78
effective length of database: 9,216,161
effective search space: 718860558
effective search space used: 718860558
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)