BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13107
(170 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7ZW41|RPB7_DANRE DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio
GN=polr2g PE=2 SV=1
Length = 172
Score = 299 bits (766), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 141/170 (82%), Positives = 159/170 (93%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CYK+V +VVIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct: 121 PNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 170
>sp|P62489|RPB7_RAT DNA-directed RNA polymerase II subunit RPB7 OS=Rattus norvegicus
GN=Polr2g PE=2 SV=1
Length = 172
Score = 298 bits (762), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 139/170 (81%), Positives = 159/170 (93%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CYK++ ++VIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 170
>sp|P62488|RPB7_MOUSE DNA-directed RNA polymerase II subunit RPB7 OS=Mus musculus
GN=Polr2g PE=2 SV=1
Length = 172
Score = 298 bits (762), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 139/170 (81%), Positives = 159/170 (93%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CYK++ ++VIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 170
>sp|P62487|RPB7_HUMAN DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens
GN=POLR2G PE=1 SV=1
Length = 172
Score = 298 bits (762), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 139/170 (81%), Positives = 159/170 (93%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CYK++ ++VIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 170
>sp|Q5E9B8|RPB7_BOVIN DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus GN=POLR2G
PE=2 SV=1
Length = 172
Score = 298 bits (762), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 139/170 (81%), Positives = 159/170 (93%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
PG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
PNSNP CYK++ ++VIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 170
>sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2
SV=1
Length = 176
Score = 210 bits (534), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 99/170 (58%), Positives = 129/170 (75%), Gaps = 1/170 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+HI LE + LHPRYFG L + + KL +VEGTC+G++GFV+AVT I++IG GLI+
Sbjct: 1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G GFV +PVKY+ +VFRPFKGE+L+AVVT VNK+G FAE GP+ F+S+H IP DM+F
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
P Y + G V IQ+D E+RLKI+GTRVDA+ IF IGT+ DD+LG+
Sbjct: 121 SGDMP-NYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGV 169
>sp|P38421|RPB7_ARATH DNA-directed RNA polymerase II subunit RPB7 OS=Arabidopsis thaliana
GN=RPB19 PE=1 SV=1
Length = 176
Score = 206 bits (525), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 97/170 (57%), Positives = 128/170 (75%), Gaps = 1/170 (0%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+HI LE + LHPR+FG L E + KL +VEGTC+G++GFV+A+T ID+IG GLI+
Sbjct: 1 MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G GFV +PVKY+ +VFRPFKGE+L+AVVT VNK+G FAE GP+ F+S H IP DM+F
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
P Y + G V IQ++ E+RLKI+GTRVDA+ IF +GT+ DD+LG+
Sbjct: 121 AGDMP-NYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGV 169
>sp|Q54P04|RPB7_DICDI DNA-directed RNA polymerase II subunit rpb7 OS=Dictyostelium
discoideum GN=polr2g PE=3 SV=1
Length = 172
Score = 201 bits (510), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 91/170 (53%), Positives = 127/170 (74%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF+H++LE ++ +HP++ GP L+ Q+LYSEVEGTCTG+YGF+I +T++D + G +
Sbjct: 1 MFFHLTLEKDLHMHPKHCGPNLFTIATQQLYSEVEGTCTGRYGFIITITSVDFLSKGKVL 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G+VV+ VKY+AI+F+PFKGEVLDA+VT+V +G FAE GPLS F+S IP+DM F
Sbjct: 61 ESSGYVVFNVKYKAIIFKPFKGEVLDAIVTKVTNLGFFAEAGPLSIFVSTQLIPSDMIFD 120
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
S C+ S G I +DDE+RL+I GTRVDA+ IFAIG++ +DYLG+
Sbjct: 121 AQSAVPCFVSEDGSSKISKDDEVRLQIKGTRVDATEIFAIGSIREDYLGV 170
>sp|O14459|RPB7_SCHPO DNA-directed RNA polymerase II subunit rpb7 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb7 PE=1 SV=1
Length = 172
Score = 182 bits (463), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 90/172 (52%), Positives = 123/172 (71%), Gaps = 6/172 (3%)
Query: 2 FYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAV---TTIDSIGAGL 58
F+ L I LHP YFGP++ + +K KL ++VEGTC+G+YG++I V TID I G
Sbjct: 3 FFLKELSLTISLHPSYFGPRMQDYLKAKLLADVEGTCSGQYGYIICVLDSNTID-IDKGR 61
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
+ PGQGF + VKYRA+++RPF+GEV+DA+VT VNK+G FA IGPL+ F+S H +P DM+
Sbjct: 62 VVPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMK 121
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
F P +NP Y + VI++ +RLKIVGTR DA+ IFAI T+ +DYLG+
Sbjct: 122 FDPTANPPNYSG--EDQVIEKGSNVRLKIVGTRTDATEIFAIATMKEDYLGV 171
>sp|P34087|RPB7_YEAST DNA-directed RNA polymerase II subunit RPB7 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPB7 PE=1
SV=1
Length = 171
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 104/171 (60%), Gaps = 4/171 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIG--AGL 58
MF+ L I LHP +FGP++ + +K KL EVEG+CTGK+G+++ V D+I G
Sbjct: 1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGR 60
Query: 59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
I P G + VKYRA+VF+PFKGEV+D V ++ G ++GP+ F++ H +P D+
Sbjct: 61 ILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLT 120
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
F SNP Y+S E VI IR+KI G S I AIG++ +DYLG
Sbjct: 121 FNAGSNPPSYQS--SEDVITIKSRIRVKIEGCISQVSSIHAIGSIKEDYLG 169
>sp|Q57840|RPOE1_METJA DNA-directed RNA polymerase subunit E' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoE1 PE=1 SV=1
Length = 187
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 3/156 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + + + + P FG L ETVK+ L + EG GFV+++ + IG G +
Sbjct: 1 MYKILEIADVVKVPPEEFGKDLKETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGEGKVV 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQF 119
G G +PV + +V+ P E+++ V V + G F +GPL I I D + +
Sbjct: 61 HGDGSAYHPVVFETLVYIPEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSY 120
Query: 120 CPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDAS 155
P + K V++ D +R +IV + A
Sbjct: 121 DPKREAIIGKETGK--VLEIGDYVRARIVAISLKAE 154
>sp|O94285|RPC8_SCHPO DNA-directed RNA polymerase III subunit rpc8 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc25 PE=1 SV=1
Length = 203
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 15/158 (9%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF I +HP F E + ++++ + G I V IG G+I+
Sbjct: 1 MFLLSRFSDIISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQF- 119
G G V +R I+FRPF+GEV+ + ++ G+ I F IP DM F
Sbjct: 61 YGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEEGIRVTIS----FFDDIFIPKDMLFD 116
Query: 120 -C---PNSNPVCYK------SVHGEVVIQEDDEIRLKI 147
C P+ +K S E+ D+EIR +I
Sbjct: 117 PCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQI 154
>sp|P39466|RPOE_SULAC DNA-directed RNA polymerase subunit E OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoE PE=1 SV=2
Length = 183
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 2/170 (1%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P YFG + E + L E + G V+ + + G I
Sbjct: 1 MFKLVRAKGIVRIPPEYFGQSVDEIAIKILRQEYQEKLIKDIGVVLGIVNAKASEEGFII 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
G G + V++ +V+ P EV++ V+QV+ G++ +GP+ + H S TD
Sbjct: 61 FGDGATYHEVEFDMLVYTPIIHEVIEGEVSQVDNYGVYVNMGPVDGLV-HISQITDDNLK 119
Query: 121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIG-TLMDDYLG 169
+SN + IQ+ D +R I+ + + + I T+ YLG
Sbjct: 120 FDSNRGILIGEKSKKSIQKGDRVRAMIISASMSSGRLPRIALTMKQPYLG 169
>sp|Q557J3|RPC8_DICDI DNA-directed RNA polymerase III subunit rpc8 OS=Dictyostelium
discoideum GN=polr3h-1 PE=2 SV=1
Length = 252
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 20/157 (12%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGK----YGFVIAVTTIDSIGA 56
MF+ I++E ++ + P F ++ Q + E+E T K G +A+ I G
Sbjct: 1 MFHLITIEDKVRIAPSQFNNEV-----QTIEDEIEKKYTSKVVLNAGLFVALYDILGTGD 55
Query: 57 GLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNK------VGMFAEIGPLSCFISH 110
+ G G V++R +VF+PFKGEVL+ V+ + ++ +G F EI +++
Sbjct: 56 SYVHSGDGGAHLMVRFRMVVFKPFKGEVLEGVIKKSSRQSIQISLGFFHEI-----YLNP 110
Query: 111 HSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKI 147
+P + ++ ++ ++ +R KI
Sbjct: 111 IELPNPSNYNQEEGLWYWEWNENQLFFEDGGRVRFKI 147
>sp|Q5UQW1|YL376_MIMIV Putative DNA-directed RNA polymerase subunit L376 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_L376 PE=1 SV=1
Length = 199
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 78/169 (46%), Gaps = 8/169 (4%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
+++ LE ++ L P + + + L ++V+ T ++G V+ V I G+I
Sbjct: 6 LYFQTKLEDKVSLLPSQMVGNMENYLLENLEAKVKDKVT-EHGIVLKVNRIIEYDYGIIS 64
Query: 61 PGQ--GFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
G +Y VKY ++ P K + +V + K + A+ GP+ I ++I +D
Sbjct: 65 KNNFSGTAIYRVKYECLICSPVKNLSIICLVENIVKGYIIAKNGPVIVAIPFNNIDSDKF 124
Query: 119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVG--TRVDASGIFAIGTLMD 165
N N + YK+ IQ+ D +++ I+ T ++ I I L+D
Sbjct: 125 QLTNGN-IVYKNNSNN--IQKGDYVKVSIINIKTNLNEKKITTIAKLLD 170
>sp|P35718|RPC8_YEAST DNA-directed RNA polymerase III subunit RPC8 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPC25 PE=1
SV=1
Length = 212
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 43/97 (44%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + P F + +L ++ G I + + ++ G ++
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
PG G V +RA+VF+PF GE++ +++ G+
Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGI 97
>sp|Q9Y535|RPC8_HUMAN DNA-directed RNA polymerase III subunit RPC8 OS=Homo sapiens
GN=POLR3H PE=1 SV=1
Length = 204
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L +++ ++L ++ G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + + G+ +G
Sbjct: 61 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLG 102
>sp|Q2T9X1|RPC8_BOVIN DNA-directed RNA polymerase III subunit RPC8 OS=Bos taurus
GN=POLR3H PE=2 SV=1
Length = 204
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L +++ ++L ++ G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIDEELNKKLANKVMYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + + G+ +G
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLG 102
>sp|Q9D2C6|RPC8_MOUSE DNA-directed RNA polymerase III subunit RPC8 OS=Mus musculus
GN=Polr3h PE=2 SV=2
Length = 204
Score = 37.0 bits (84), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 44/102 (43%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MF + + + + P F +L +++ ++L ++ G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102
PG G V +R +VF PF E+L + + G+ +G
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLG 102
>sp|B5RQE3|PNP_BORRA Polyribonucleotide nucleotidyltransferase OS=Borrelia recurrentis
(strain A1) GN=pnp PE=3 SV=1
Length = 717
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 70 VKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLS-CFISHHSIPTDMQFCPNSNPVCY 128
K +IV P GE+ D +V ++N G F E+ P F+S+ S D ++ + Y
Sbjct: 610 AKIESIVREPKVGEIYDGIVKKINSFGAFIELTPTKEGFLSNRSRSRDDRYGSDIRHSRY 669
Query: 129 KSVH 132
+ H
Sbjct: 670 SNRH 673
>sp|Q55FA4|RPA43_DICDI Probable DNA-directed RNA polymerase I subunit RPA43
OS=Dictyostelium discoideum GN=rpa43 PE=2 SV=1
Length = 356
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 73 RAIVFRPFKGEVLDAVVTQVNKVGM-FAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSV 131
+ +VF+PFK ++L+ VV +V+ + G +S I +IP F +SN K
Sbjct: 90 KFLVFKPFKDQILNGVVKRVSTTHISLLVFGTISASIPKSNIPKSFAFDHSSNMFMNKQT 149
Query: 132 HGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMD 165
+ + +I K++ D I G + D
Sbjct: 150 KATISV--GTKIAFKVIDVSADRHNIGIQGDMTD 181
>sp|B5RMZ9|PNP_BORDL Polyribonucleotide nucleotidyltransferase OS=Borrelia duttonii
(strain Ly) GN=pnp PE=3 SV=1
Length = 717
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 70 VKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLS-CFISHHSIPTDMQF 119
K +IV P GE+ D +V ++N G F E+ P F+S+ S D ++
Sbjct: 610 AKIESIVREPKVGEIYDGIVKKINSFGAFIELTPTKEGFLSNRSRSRDDRY 660
>sp|B2S1E9|PNP_BORHD Polyribonucleotide nucleotidyltransferase OS=Borrelia hermsii
(strain DAH) GN=pnp PE=3 SV=2
Length = 717
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 70 VKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLS-CFISHHSIPTDMQF 119
K +IV P GE+ D +V ++N G F E+ P+ F+S+ + D ++
Sbjct: 610 AKIESIVREPKIGEIYDGIVKKINSFGAFIELTPIKEGFLSNRARSRDDRY 660
>sp|P31925|SUSY_SACOF Sucrose synthase (Fragment) OS=Saccharum officinarum GN=SUS1 PE=2
SV=1
Length = 218
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 14/64 (21%)
Query: 3 YHISLEHEILLH--------PRYF------GPQLYETVKQKLYSEVEGTCTGKYGFVIAV 48
YH + +IL++ P Y+ G ++YE KLYSE T TG YGF V
Sbjct: 139 YHSDKDADILVNFFDKCNADPSYWDEISQGGQRIYEKYTWKLYSERLMTLTGAYGFWNYV 198
Query: 49 TTID 52
+ ++
Sbjct: 199 SKLE 202
>sp|Q4L3I3|Y2485_STAHJ Putative ATP:guanido phosphotransferase SH2485 OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=SH2485 PE=3 SV=1
Length = 335
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 107 FISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDD 166
++ H I ++ P S + K ++I E+D IR++ +GT + ++ I + +DD
Sbjct: 77 LVAKHLISPELIKQPASAVLLNKDESISIMINEEDHIRIQAMGTDLSLQDLYNIASEIDD 136
Query: 167 YL 168
L
Sbjct: 137 TL 138
>sp|Q1GXH3|COBQ_METFK Cobyric acid synthase OS=Methylobacillus flagellatus (strain KT /
ATCC 51484 / DSM 6875) GN=cobQ PE=3 SV=1
Length = 483
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 49 TTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFI 108
TT D+ G + G V+Y R F+P + AV + ++G + +C +
Sbjct: 5 TTSDA-GKSTLVAGLCRVLYRRGVRVAPFKPQNMALNSAVTSDGGEIGRAQAVQAQACGL 63
Query: 109 SHHSIPTDMQFCPNSNPVCYKSVHGEVV 136
H+ + PN++ C +HG+V+
Sbjct: 64 LPHTDMNPVLLKPNTDTGCQVIIHGKVL 91
>sp|Q868N5|VIT_APIME Vitellogenin OS=Apis mellifera GN=Vg PE=1 SV=1
Length = 1770
Score = 29.6 bits (65), Expect = 9.7, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVN------KVGMFAEIGPLSCFISHHSIP 114
P +G ++ KY A+ F PF +LD + T ++ K G F + L + S HS P
Sbjct: 871 PLEGNLMINNKY-ALKFFPFDKHILDKLPTLISNYIEAVKEGKFMNVNMLDTYESVHSFP 929
Query: 115 TD 116
T+
Sbjct: 930 TE 931
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.143 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,614,768
Number of Sequences: 539616
Number of extensions: 2645017
Number of successful extensions: 5251
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 5220
Number of HSP's gapped (non-prelim): 29
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)