Query psy13107
Match_columns 170
No_of_seqs 153 out of 1735
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 19:41:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13107.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13107hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_G DNA-directed RNA polyme 100.0 1.2E-49 4.2E-54 299.5 16.5 168 1-170 1-171 (172)
2 3ayh_B DNA-directed RNA polyme 100.0 7.4E-48 2.5E-52 296.6 23.3 170 1-170 1-198 (203)
3 2ckz_B C25, DNA-directed RNA p 100.0 4.4E-47 1.5E-51 294.6 24.3 170 1-170 1-207 (218)
4 2c35_B Human RPB7, DNA-directe 100.0 4.2E-46 1.4E-50 280.3 23.7 170 1-170 1-170 (172)
5 4ayb_E DNA-directed RNA polyme 100.0 2.2E-46 7.6E-51 283.6 19.8 168 1-170 1-171 (180)
6 1y14_B B16, RPB7, DNA-directed 100.0 1.8E-45 6.1E-50 276.6 20.2 168 1-170 1-170 (171)
7 2b8k_G B16, DNA-directed RNA p 100.0 1.9E-44 6.5E-49 279.2 19.6 168 1-170 1-170 (215)
8 1go3_E DNA-directed RNA polyme 100.0 3.9E-39 1.3E-43 245.1 22.5 168 1-170 1-172 (187)
9 2rf4_A DNA-directed RNA polyme 100.0 2E-31 6.7E-36 206.4 17.2 160 1-164 37-213 (214)
10 4aid_A Polyribonucleotide nucl 99.3 7.5E-15 2.6E-19 130.0 -7.1 137 9-158 555-702 (726)
11 2k52_A Uncharacterized protein 99.3 7.1E-12 2.4E-16 82.1 7.6 67 77-159 1-68 (80)
12 1kl9_A Eukaryotic translation 99.3 2.3E-11 7.8E-16 91.5 9.3 69 79-159 13-84 (182)
13 1luz_A Protein K3, protein K2; 99.3 5E-12 1.7E-16 84.4 5.1 67 77-158 7-78 (88)
14 3cdi_A Polynucleotide phosphor 99.3 1.8E-13 6E-18 121.6 -3.0 136 10-158 546-692 (723)
15 2khi_A 30S ribosomal protein S 99.2 3.5E-11 1.2E-15 84.1 8.7 77 72-159 21-98 (115)
16 2k4k_A GSP13, general stress p 99.2 2.7E-11 9.4E-16 86.4 7.9 70 78-159 4-74 (130)
17 2a19_A EIF-2- alpha, eukaryoti 99.2 5.3E-11 1.8E-15 89.0 9.2 69 79-159 13-84 (175)
18 2eqs_A ATP-dependent RNA helic 99.2 1.6E-11 5.6E-16 84.2 5.7 66 76-152 7-76 (103)
19 2cqo_A Nucleolar protein of 40 99.2 7E-12 2.4E-16 88.2 3.8 72 71-154 12-85 (119)
20 2khj_A 30S ribosomal protein S 99.1 6.7E-11 2.3E-15 81.8 6.1 71 77-159 27-98 (109)
21 1wi5_A RRP5 protein homolog; S 99.1 4.6E-11 1.6E-15 83.9 4.7 79 78-169 18-98 (119)
22 2id0_A Exoribonuclease 2; RNAs 99.0 2.1E-09 7E-14 94.8 10.7 84 72-158 549-639 (644)
23 3aev_A Translation initiation 99.0 1.3E-09 4.4E-14 86.9 8.3 70 78-159 8-80 (275)
24 1e3p_A Guanosine pentaphosphat 98.9 3.6E-12 1.2E-16 113.7 -8.8 128 16-158 590-736 (757)
25 1q8k_A Eukaryotic translation 98.9 2.3E-09 8E-14 86.5 8.1 69 79-159 11-82 (308)
26 2nn6_I 3'-5' exoribonuclease C 98.9 1.5E-09 5.3E-14 83.2 5.9 82 76-169 76-166 (209)
27 3bzc_A TEX; helix-turn-helix, 98.8 1.1E-09 3.9E-14 98.0 2.7 70 78-159 651-721 (785)
28 3m7n_A Putative uncharacterize 98.8 9.5E-09 3.3E-13 77.0 7.1 74 76-169 53-137 (179)
29 3psi_A Transcription elongatio 98.8 1.4E-08 4.7E-13 94.5 8.6 70 78-159 899-970 (1219)
30 2wp8_J Exosome complex exonucl 98.7 1.5E-08 5.1E-13 92.8 7.2 79 72-153 878-965 (977)
31 3cw2_C Translation initiation 98.7 2.3E-09 7.9E-14 85.0 1.7 70 78-159 8-80 (266)
32 2vnu_D Exosome complex exonucl 98.7 2.1E-08 7.1E-13 89.9 7.6 84 72-158 661-756 (760)
33 2je6_I RRP4, exosome complex R 98.7 1.9E-08 6.5E-13 79.1 6.0 82 76-169 69-151 (251)
34 2ba0_A Archeal exosome RNA bin 98.7 3.8E-08 1.3E-12 76.4 7.4 78 77-169 53-132 (229)
35 3psf_A Transcription elongatio 98.6 3.4E-09 1.1E-13 97.2 0.0 70 78-159 902-973 (1030)
36 2z0s_A Probable exosome comple 98.6 3.2E-08 1.1E-12 77.1 5.5 82 77-169 62-144 (235)
37 3go5_A Multidomain protein wit 98.5 2.8E-07 9.5E-12 73.7 8.4 64 80-165 151-216 (285)
38 2ja9_A Exosome complex exonucl 98.5 1.2E-07 4.1E-12 70.7 5.7 80 77-170 3-88 (175)
39 2nn6_H Exosome complex exonucl 98.3 3.5E-07 1.2E-11 73.8 4.3 88 77-170 91-180 (308)
40 2bh8_A 1B11; transcription, mo 98.3 3.4E-07 1.2E-11 62.3 3.3 60 55-114 29-95 (101)
41 1hh2_P NUSA, N utilization sub 98.2 6.2E-06 2.1E-10 67.4 9.6 67 78-162 131-197 (344)
42 1k0r_A NUSA; two component arr 97.9 1.8E-05 6.1E-10 65.0 6.7 69 76-162 125-201 (366)
43 2bx2_L Ribonuclease E, RNAse E 97.9 1.4E-05 5E-10 68.4 6.0 79 78-160 42-124 (517)
44 3go5_A Multidomain protein wit 97.9 2.3E-05 7.9E-10 62.6 6.4 56 80-152 68-126 (285)
45 2asb_A Transcription elongatio 97.8 5.7E-05 2E-09 59.0 6.7 68 77-162 3-78 (251)
46 2nn6_G Exosome complex exonucl 97.2 0.00061 2.1E-08 54.4 5.8 80 77-170 123-206 (289)
47 2r7d_A Ribonuclease II family 95.3 0.014 4.9E-07 49.4 4.3 65 72-159 394-458 (469)
48 2bh8_A 1B11; transcription, mo 95.2 0.054 1.9E-06 36.2 6.0 55 81-151 13-73 (101)
49 1wfq_A UNR protein; beta-barre 91.6 0.72 2.5E-05 30.0 6.5 52 82-150 16-69 (89)
50 1h95_A CSD, Y-box binding prot 90.8 0.63 2.1E-05 29.5 5.5 58 80-149 4-65 (79)
51 2yty_A Cold shock domain-conta 90.5 0.34 1.2E-05 31.5 4.1 52 81-149 15-68 (88)
52 3i2z_B RNA chaperone, negative 90.0 1.1 3.7E-05 27.7 6.0 51 84-150 5-59 (71)
53 3cam_A Cold-shock domain famil 87.3 1.4 4.6E-05 27.0 5.0 49 86-150 3-55 (67)
54 3aqq_A Calcium-regulated heat 85.1 2.8 9.5E-05 29.8 6.4 51 81-149 59-113 (147)
55 1c9o_A CSPB, cold-shock protei 84.8 3.5 0.00012 24.9 6.0 48 86-150 3-54 (66)
56 1g6p_A Cold shock protein TMCS 83.3 1.4 4.7E-05 26.8 3.6 48 86-149 2-52 (66)
57 2ytx_A Cold shock domain-conta 83.2 1.4 4.9E-05 29.0 3.9 50 82-148 16-67 (97)
58 3a0j_A Cold shock protein; OB- 80.1 3.7 0.00013 25.4 4.9 48 86-149 3-53 (73)
59 3ts2_A Protein LIN-28 homolog 78.7 6 0.0002 27.9 6.2 50 85-150 10-70 (148)
60 3d0f_A Penicillin-binding 1 tr 78.6 4.9 0.00017 26.5 5.4 61 79-146 31-93 (106)
61 3ulj_A LIN28B, DNA-binding pro 78.2 7.1 0.00024 25.2 5.9 50 85-150 9-69 (90)
62 2k5n_A Putative cold-shock pro 77.3 6.5 0.00022 24.4 5.4 47 85-149 3-52 (74)
63 2lss_A Cold shock-like protein 78.9 0.48 1.6E-05 29.3 0.0 51 84-150 4-58 (70)
64 2ytv_A Cold shock domain-conta 73.7 2.2 7.4E-05 27.0 2.4 48 84-149 8-58 (79)
65 2kcm_A Cold shock domain famil 73.6 3.4 0.00012 25.7 3.3 48 86-149 2-53 (74)
66 1x65_A UNR protein; cell-free 68.4 2 6.8E-05 27.9 1.4 49 83-149 7-57 (89)
67 2jk8_A BEPA, putative cell fil 49.8 23 0.00078 27.8 4.8 57 75-147 244-300 (302)
68 3ie4_A GRAM-negative binding p 44.6 39 0.0013 22.4 4.7 62 87-150 6-81 (107)
69 2qcp_X Cation efflux system pr 39.5 18 0.00062 22.6 2.2 55 85-150 10-67 (80)
70 2vb2_X Copper protein, cation 37.8 20 0.00067 22.9 2.2 55 85-150 18-75 (88)
71 2l55_A SILB,silver efflux prot 36.6 77 0.0026 19.7 5.6 55 85-150 6-61 (82)
72 2p9r_A Alpha-2-M, alpha-2-macr 35.5 48 0.0017 21.0 4.0 17 136-152 12-28 (102)
73 1iby_A Nitrosocyanin; RED copp 30.3 76 0.0026 20.3 4.3 19 133-151 38-56 (112)
74 3h8z_A FragIle X mental retard 29.3 1.4E+02 0.0047 20.4 5.7 58 80-149 13-73 (128)
75 2l74_A Putative uncharacterize 28.9 61 0.0021 22.3 3.8 33 68-102 34-66 (145)
76 1cyx_A CYOA; electron transpor 27.0 49 0.0017 24.6 3.1 20 133-152 41-60 (205)
77 2jpp_A Translational repressor 23.8 50 0.0017 20.2 2.2 19 133-151 8-26 (70)
78 4hci_A Cupredoxin 1; structura 22.9 55 0.0019 20.6 2.5 15 135-149 30-44 (100)
79 1ywu_A Hypothetical protein PA 21.0 66 0.0023 22.2 2.7 21 82-102 48-68 (149)
No 1
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-49 Score=299.45 Aligned_cols=168 Identities=51% Similarity=0.956 Sum_probs=159.9
Q ss_pred CeEEEEEEE-EEEEcCCCCCCCHHHHHHHHHHhhhcceEeCCeeEEEEEc--eeceeCCeeEecCCCceEEeEEEEEEEe
Q psy13107 1 MFYHISLEH-EILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVT--TIDSIGAGLIQPGQGFVVYPVKYRAIVF 77 (170)
Q Consensus 1 Mf~~~~~~~-~i~i~P~~l~~~~~~~i~~~l~~~~~gk~~~~~G~~i~i~--~i~~~~~g~I~~~~g~~~~~v~f~~i~f 77 (170)
||++.+|+| +|++||++|++++++++..+|+++|+|+|+++.|+||+++ ||.++++|+|.++||+++++|+|++++|
T Consensus 1 Mf~l~~l~d~~i~ipp~~~~~~~~~~i~~~l~~~~~g~vi~~~G~~I~i~~idi~~i~~G~I~~gdg~~~~~v~f~~ivf 80 (172)
T 3h0g_G 1 MPFFLKELSLTISLHPSYFGPRMQDYLKAKLLADVEGTCSGQYGYIICVLDSNTIDIDKGRVVPGQGFAEFEVKYRAVLW 80 (172)
T ss_dssp --CEEEEEEEEEECCGGGCTTTHHHHHHHHHHHHHTTCEETTTEEEEEECTTTSEEECCCEECTTTCCEEEEEEEEEEEE
T ss_pred CeEEEEEecCeEEeCHHHhCccHHHHHHHHHHHHhCCcCcCCccEEEEEEeeeeeEeeCCEEECCCCcEEEEEEEEEeee
Confidence 999999999 9999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred ecCCCCEEEEEEEEEecccEEEEecCeeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEEEecCCce
Q psy13107 78 RPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGI 157 (170)
Q Consensus 78 ~p~~gev~~g~V~~i~~~Gifv~lg~~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~i 157 (170)
+|++||+++|+|++++++|+||++++++||||.|+|+++|.||++++.|+| ++++..++.||+|||||.+++.+++++
T Consensus 81 ~p~~Gev~~G~V~~v~~fG~FV~l~~~~glVh~s~l~~~~~~d~~~~~~~~--~~~~~~~~~Gd~VrvkV~~vd~~~~~~ 158 (172)
T 3h0g_G 81 RPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKFDPTANPPNY--SGEDQVIEKGSNVRLKIVGTRTDATEI 158 (172)
T ss_dssp CCCTTCEEECCCCEEETTEEECCBTTBCCEEEGGGSCTTCCCBSSSSSCBE--ESSSCEECSSCCEEEEEEEEEESSSCE
T ss_pred ccCCCCEEEEEEEEEEcceEEEEeCCeEEEEEHHHCCCccccCcccccceE--ecCCcEECCCCEEEEEEEEEECCCCCc
Confidence 999999999999999999999999999999999999877999998777888 455679999999999999999999999
Q ss_pred EEEEEecCCCCCC
Q psy13107 158 FAIGTLMDDYLGL 170 (170)
Q Consensus 158 ~~ig~~~~~~LG~ 170 (170)
.+||||++|||||
T Consensus 159 ~~Igtm~~~~LG~ 171 (172)
T 3h0g_G 159 FAIATMKEDYLGV 171 (172)
T ss_dssp EEEEECCSTTCEE
T ss_pred eEEEEcCCCCCCC
Confidence 9999999999996
No 2
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.4e-48 Score=296.61 Aligned_cols=170 Identities=25% Similarity=0.381 Sum_probs=161.3
Q ss_pred CeEEEEEEEEEEEcCCCCCCCHHHHHHHHHHhhhcceEeCCeeEEEEEceeceeCCeeEecCCCceEEeEEEEEEEeecC
Q psy13107 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPF 80 (170)
Q Consensus 1 Mf~~~~~~~~i~i~P~~l~~~~~~~i~~~l~~~~~gk~~~~~G~~i~i~~i~~~~~g~I~~~~g~~~~~v~f~~i~f~p~ 80 (170)
||++++++|+|+|||++|++++.++|.++|+++|+||++++.|+||+++|+.++++|+|.+|||+++++|+|+|++|+|+
T Consensus 1 MF~l~~l~d~V~i~P~~f~~~~~~~i~~~L~~~~egkv~~~~Gl~I~v~di~~i~~g~I~~GdG~~~~~V~fk~~~f~p~ 80 (203)
T 3ayh_B 1 MFLLSRFSDIISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIKYGDGSSYMNVVFRLIIFRPF 80 (203)
T ss_dssp CEEEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHTTEEETTTEEEEEEEEEEEECCCEECTTTCCEEEEEEEEEEEECCC
T ss_pred CeEEEEEEEEEEECHHHcCChHHHHHHHHhhhhhCCEEeCCccEEEEEEEeeEecccEEeCCCCCEEEEEEEEEEEEccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEEEecccEEEEecCeeEEEEcCCCCCC-ceecCCCCCeEEEe------cCceeEEcCCCeEEEEEEEEEec
Q psy13107 81 KGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQFCPNSNPVCYKS------VHGEVVIQEDDEIRLKIVGTRVD 153 (170)
Q Consensus 81 ~gev~~g~V~~i~~~Gifv~lg~~~~~i~~~~l~~~-~~~d~~~~~~~~~~------~~~~~~~~~Gd~VrvrV~~v~~~ 153 (170)
+||+++|+|++++++|+||++|++++++|.+++.++ |.||++++.|.|.+ ++++.+|++||.|||||.+++++
T Consensus 81 ~GEv~~G~Vs~vt~~GifV~lg~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~ 160 (203)
T 3ayh_B 81 RGEVMLGKIKSCSEEGIRVTISFFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESEDFV 160 (203)
T ss_dssp TTCEEEEEEEEEETTEEEEECSSCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEEEEEEEC
T ss_pred CCCEEEEEEEEEeccEEEEEEeCceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEEEEEEcc
Confidence 999999999999999999999988999999998666 89999999988877 77788999999999999999994
Q ss_pred C---------------------CceEEEEEecCCCCCC
Q psy13107 154 A---------------------SGIFAIGTLMDDYLGL 170 (170)
Q Consensus 154 ~---------------------~~i~~ig~~~~~~LG~ 170 (170)
. ..+.++|||++||||+
T Consensus 161 ~~~p~~~~~~~~~~~~~~~~~~~~~~i~gs~~~~gLG~ 198 (203)
T 3ayh_B 161 DISPKRNKNATAITGTEALESVSPYTLIASCSRDGLGI 198 (203)
T ss_dssp C--------------------CCSEEEEEEBCSTTCBC
T ss_pred ccCCCCccccccccccccccCCCCeEEEEEecCCCCce
Confidence 3 2467999999999997
No 3
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-47 Score=294.61 Aligned_cols=170 Identities=18% Similarity=0.369 Sum_probs=159.2
Q ss_pred CeEEEEEEEEEEEcCCCCCCCHHHHHHHHHHhhhcceEeCCeeEEEEEceeceeCCeeEecCCCceEEeEEEEEEEeecC
Q psy13107 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPF 80 (170)
Q Consensus 1 Mf~~~~~~~~i~i~P~~l~~~~~~~i~~~l~~~~~gk~~~~~G~~i~i~~i~~~~~g~I~~~~g~~~~~v~f~~i~f~p~ 80 (170)
||++++++|+|+|||++|++++.++|.++|+++|+||++++.|+||+++||.++++|+|.+|||+++++|+|+|++|+|+
T Consensus 1 MF~l~~l~d~V~I~P~~f~~~l~~~i~~~L~~kyegkv~~~~Gl~I~v~di~~i~eG~I~~GdG~~~~~V~fk~~~f~p~ 80 (218)
T 2ckz_B 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLKPGDGSSYINVTFRAVVFKPF 80 (218)
T ss_dssp CEEEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHTTEEETTTEEEEEEEEEEEECCCEECSSSSCEEEEEEEEEEEECCC
T ss_pred CeEEEEEEEEEEECHHHcCchHHHHHHHHHHHHhcCcCcCCccEEEEEEEeeeccCcEEeCCCCCEEEEEEEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEEEecccEEEEe-cCeeEEEEcCCCCCC-ceecCCCCCeEEEe-cCceeEEcCCCeEEEEEEEEEecCC--
Q psy13107 81 KGEVLDAVVTQVNKVGMFAEI-GPLSCFISHHSIPTD-MQFCPNSNPVCYKS-VHGEVVIQEDDEIRLKIVGTRVDAS-- 155 (170)
Q Consensus 81 ~gev~~g~V~~i~~~Gifv~l-g~~~~~i~~~~l~~~-~~~d~~~~~~~~~~-~~~~~~~~~Gd~VrvrV~~v~~~~~-- 155 (170)
+||+++|+|++++++|+||++ ++++|++|.+++.+| |.||++++.|.|.+ ++++.+|++||+|||||.+++++++
T Consensus 81 vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~~~~~~p 160 (218)
T 2ckz_B 81 LGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKP 160 (218)
T ss_dssp TTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEEECCCCC
T ss_pred CCCEEEEEEEEEccCcEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEEcccCCC
Confidence 999999999999999999999 878999999999766 89999999888876 6678899999999999999998643
Q ss_pred --------------------------------ceEEEEEecCCCCCC
Q psy13107 156 --------------------------------GIFAIGTLMDDYLGL 170 (170)
Q Consensus 156 --------------------------------~i~~ig~~~~~~LG~ 170 (170)
-+.++|||+++|||+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~gs~~~~GLG~ 207 (218)
T 2ckz_B 161 KSPKERELEERAQLENEIEGKNEETPQNEKPPAYALLGSCQTDGMGL 207 (218)
T ss_dssp -------------------------------CSEEEEEECCSTTCEE
T ss_pred CCccccccccccccccccccccccccccCCCCCeEEEEEecCCCCch
Confidence 145899999999996
No 4
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=100.00 E-value=4.2e-46 Score=280.26 Aligned_cols=170 Identities=82% Similarity=1.385 Sum_probs=165.4
Q ss_pred CeEEEEEEEEEEEcCCCCCCCHHHHHHHHHHhhhcceEeCCeeEEEEEceeceeCCeeEecCCCceEEeEEEEEEEeecC
Q psy13107 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPF 80 (170)
Q Consensus 1 Mf~~~~~~~~i~i~P~~l~~~~~~~i~~~l~~~~~gk~~~~~G~~i~i~~i~~~~~g~I~~~~g~~~~~v~f~~i~f~p~ 80 (170)
||++.+|+++|++||++|++++++++..+|+++++|+++++.|++|+++||.++++|++.++||..++++.|++++|+|+
T Consensus 1 mfil~~m~~~I~~~p~~~~~~~~~~i~~~l~~~~~~~vi~~~G~~I~~~di~~i~~g~i~~~d~~~~~~~~~~~~~~~~~ 80 (172)
T 2c35_B 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPF 80 (172)
T ss_dssp CEEEEEEEEEEEECGGGCCSCHHHHHHHHHHHHHTTCEETTTEEEEEEEEEEEECCCBCCTTCSSEEEEEEEEEEEECCC
T ss_pred CcEEEEEeEEEEECHHHhCChHHHHHHHHHHHHHcCcCcCCceEEEEEEEeeecCCeEEeCCCCCEEEEEEEEEEEeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEEEecccEEEEecCeeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEEEecCCceEEE
Q psy13107 81 KGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAI 160 (170)
Q Consensus 81 ~gev~~g~V~~i~~~Gifv~lg~~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~i~~i 160 (170)
+||+++|+|++++++|+||++++++||||.|+|+++|.||+.+++|+|.+++++.+++.||.|||||.+++++++.+.++
T Consensus 81 ~Gev~~G~V~~v~~fG~fV~l~~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~~~~i 160 (172)
T 2c35_B 81 KGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAI 160 (172)
T ss_dssp TTCEEEEEEEEEETTEEEEEETTEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETTEEEEE
T ss_pred CCCEEEEEEEEEeCCEEEEEECCEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCCCCcEEE
Confidence 99999999999999999999999999999999987799999998899999988889999999999999999998888999
Q ss_pred EEecCCCCCC
Q psy13107 161 GTLMDDYLGL 170 (170)
Q Consensus 161 g~~~~~~LG~ 170 (170)
|||++||||+
T Consensus 161 gsm~~~~LG~ 170 (172)
T 2c35_B 161 GSLMDDYLGL 170 (172)
T ss_dssp EECCSTTCEE
T ss_pred EEecCCCCCC
Confidence 9999999996
No 5
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=100.00 E-value=2.2e-46 Score=283.60 Aligned_cols=168 Identities=22% Similarity=0.377 Sum_probs=156.2
Q ss_pred CeEEEEEEEEEEEcCCCCCCCHHHHHHHHHHhhhcceEeCCeeEEEEEceeceeCCeeEecCCCceEEeEEEEEEEeecC
Q psy13107 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPF 80 (170)
Q Consensus 1 Mf~~~~~~~~i~i~P~~l~~~~~~~i~~~l~~~~~gk~~~~~G~~i~i~~i~~~~~g~I~~~~g~~~~~v~f~~i~f~p~ 80 (170)
||++++++|+|+|||++|++++.+++.++|+++|+|||+++.|+||+++||.++++|+|.++||.++++++|++++|+|+
T Consensus 1 Mf~l~~l~d~V~IpP~~f~~~~~~~i~~~L~~k~~~kv~~~~G~~I~v~di~~~~~g~I~~gdg~~~~~v~~~~iv~~p~ 80 (180)
T 4ayb_E 1 MYKLIKARSIVRIPPNEFGKPLNEIALNELRQQYQEKILKDLGLVLAILNVKTSEEGMLVFGDGATYHEVEFDMITYVPV 80 (180)
T ss_dssp CEEEEEEEEEEEECGGGTTSCHHHHHHHHHHHHTTTCBCSSSCEEEEEEEEEEEEEEEECSSCSSEEEEEEEEEEEECCC
T ss_pred CeEEEEEEEEEEECHHHhCccHHHHHHHHHHHHhcCeEcCCCcEEEEeeeEeecCceeEccCchHHHHHHhhheeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEEEecccEEEEecCeeEEEEcCCCCCC-ceecCCCCCeEEEecCceeEEcCCCeEEEEEEEEEecCC--ce
Q psy13107 81 KGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDAS--GI 157 (170)
Q Consensus 81 ~gev~~g~V~~i~~~Gifv~lg~~~~~i~~~~l~~~-~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~--~i 157 (170)
+||+++|+|++++++|+||+++|++|++|.++|++| +.||+.++. |.+++++.+++.||+|||||.+++.+.+ ..
T Consensus 81 ~Gev~~G~V~~v~~~G~fv~l~~~~glvh~s~l~~d~~~~d~~~~~--~~g~~~~~~~~~Gd~VrvkV~~v~~~~~~~~~ 158 (180)
T 4ayb_E 81 VQEVVEGEVLQVDNYGVFVNLGPMDGLVHISQITDDTLKYDNVRGI--IFGEKSKKVIQKGDKVRARVISVASTVTGRLP 158 (180)
T ss_dssp TTCEEEEEEEEEETTEEEEECSSSEEEEEGGGSCSSCEEECSSSCC--EEETTTCCCCCTTCEEEEEEEEECC-------
T ss_pred CCCEEEEEEeeeccceEEEEECCccceEEeeecCCCccccchhcce--EEEeccCeEECCCCEEEEEEEEEeCCCCcccC
Confidence 999999999999999999999999999999999999 889988874 5677778899999999999999997644 34
Q ss_pred EEEEEecCCCCCC
Q psy13107 158 FAIGTLMDDYLGL 170 (170)
Q Consensus 158 ~~ig~~~~~~LG~ 170 (170)
.+.+||++|||||
T Consensus 159 rI~ls~k~~gLG~ 171 (180)
T 4ayb_E 159 RIALTMRQPYLGK 171 (180)
T ss_dssp CEEEECCSTTCEE
T ss_pred cEEEEcCCCCCCC
Confidence 5778999999996
No 6
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=100.00 E-value=1.8e-45 Score=276.59 Aligned_cols=168 Identities=43% Similarity=0.814 Sum_probs=146.5
Q ss_pred CeEEEEEEEEEEEcCCCCCCCHHHHHHHHHHhhhcceEeCCeeEEEEEceec--eeCCeeEecCCCceEEeEEEEEEEee
Q psy13107 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTID--SIGAGLIQPGQGFVVYPVKYRAIVFR 78 (170)
Q Consensus 1 Mf~~~~~~~~i~i~P~~l~~~~~~~i~~~l~~~~~gk~~~~~G~~i~i~~i~--~~~~g~I~~~~g~~~~~v~f~~i~f~ 78 (170)
||++.+|+++|++||++|++++++++..+|+++++|+++++.|++|+++||. ++++|+|.++||.+++++.|++++|+
T Consensus 1 mfil~~m~~~i~~pp~~l~~~~p~~i~~~i~~~~i~~vig~~G~~I~~~di~~~di~~g~i~~~d~~~~~~~~~~~~~~~ 80 (171)
T 1y14_B 1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFK 80 (171)
T ss_dssp CEEEEEEEEECCCCTTSCSTTHHHHHHHHHHHHHTTEEETTTEEEEEECCGGGCBCC------------CEEEEEEEEEC
T ss_pred CeEEEEEEEEEEECHHHhCChHHHHHHHHHHHHHcCcCcCCceEEEEEEEecccccCccEEeCCCCCEEEEEEEEEEEcc
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred cCCCCEEEEEEEEEecccEEEEecCeeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEEEecCCceE
Q psy13107 79 PFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIF 158 (170)
Q Consensus 79 p~~gev~~g~V~~i~~~Gifv~lg~~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~i~ 158 (170)
|++||+++|+|+++++||+||++++.+||||.|+|+++|.||+.+++|+|.+++ ..++.||.|||||.+++++++.+.
T Consensus 81 ~~~Gev~~G~V~~v~~fG~FV~l~~~dglvhis~l~~~~~~d~~~~~~~~~~~~--~~~~~Gd~V~vkV~~vd~~~~~~~ 158 (171)
T 1y14_B 81 PFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSE--DVITIKSRIRVKIEGCISQVSSIH 158 (171)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTEEEEEEGGGSCTTCEECC-----CEECSS--CEECTTCEEEEEEEEEEEETTEEE
T ss_pred CCCCCEEEEEEEEEecCEEEEEecCeEEEEEHHHCCCCceECcccCceEEeccc--eEECCCCEEEEEEEEEEcCCCCcE
Confidence 999999999999999999999999899999999999779999999999999876 479999999999999999999999
Q ss_pred EEEEecCCCCCC
Q psy13107 159 AIGTLMDDYLGL 170 (170)
Q Consensus 159 ~ig~~~~~~LG~ 170 (170)
++|||++||||+
T Consensus 159 ~igsm~~~~LG~ 170 (171)
T 1y14_B 159 AIGSIKEDYLGA 170 (171)
T ss_dssp EEEECCSTTCEE
T ss_pred EEEEcCCCCCCC
Confidence 999999999996
No 7
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=100.00 E-value=1.9e-44 Score=279.15 Aligned_cols=168 Identities=43% Similarity=0.814 Sum_probs=163.2
Q ss_pred CeEEEEEEEEEEEcCCCCCCCHHHHHHHHHHhhhcceEeCCeeEEEEEceec--eeCCeeEecCCCceEEeEEEEEEEee
Q psy13107 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTID--SIGAGLIQPGQGFVVYPVKYRAIVFR 78 (170)
Q Consensus 1 Mf~~~~~~~~i~i~P~~l~~~~~~~i~~~l~~~~~gk~~~~~G~~i~i~~i~--~~~~g~I~~~~g~~~~~v~f~~i~f~ 78 (170)
||++.+|+++|++||++|++++++++..+|+.+|+|+|++++|+||+++||. ++++|+|.++||.+++++.|++++|+
T Consensus 1 MfiL~~m~~~I~ipp~~~~~~~p~~i~~~I~~~~ig~vIg~~G~vI~~~dI~~~di~dG~I~~gdg~~~~~v~~~~i~~~ 80 (215)
T 2b8k_G 1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFK 80 (215)
T ss_dssp CEEEECCEEEEEECGGGCSSSHHHHHHHHHHHSSTTCEETTTEEEEEECCSTTCBCCCEEECSSSCCEEEEEECCEEEEC
T ss_pred CEEeHHHHhhhhcCHHHHChhHhHHHHhcCCHHHCCeEcCCCCEEEEEEEeeecccccceEeCCCHHHHHHHHhhhheec
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred cCCCCEEEEEEEEEecccEEEEecCeeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEEEecCCceE
Q psy13107 79 PFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIF 158 (170)
Q Consensus 79 p~~gev~~g~V~~i~~~Gifv~lg~~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~i~ 158 (170)
|++||+++|+|++++++|+||++++.+||||.|+|+++|.||+.+++|+|.+++ ..+++||.|||||.+++++++.+.
T Consensus 81 p~vGev~~G~V~~vt~fG~FVelg~~dGlVhiS~l~d~~~~d~~~~~w~~~~~~--~~~~~Gd~VrVkV~~vd~~~~~i~ 158 (215)
T 2b8k_G 81 PFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSE--DVITIKSRIRVKIEGCISQVSSIH 158 (215)
T ss_dssp CCTTEEEEEEEEEEETTEEEEECTTSEEEEEGGGSCSSCCCBSSCSSCEEECSS--CEEETTCEEEEEEEEEEEETTEEE
T ss_pred cCCCCEEEEEEEEEecceEEEEecCcEEEEEHHHCCccceeccccccceeeccc--cEECCCCEEEEEEEEEEcCCCccE
Confidence 999999999999999999999999899999999998779999999999999877 479999999999999999999999
Q ss_pred EEEEecCCCCCC
Q psy13107 159 AIGTLMDDYLGL 170 (170)
Q Consensus 159 ~ig~~~~~~LG~ 170 (170)
+||||+++||||
T Consensus 159 ~IgSmk~~~LG~ 170 (215)
T 2b8k_G 159 AIGSIKEDYLGA 170 (215)
T ss_dssp EEEECCSTTCEE
T ss_pred EEEEcCCCCCCC
Confidence 999999999996
No 8
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=100.00 E-value=3.9e-39 Score=245.14 Aligned_cols=168 Identities=28% Similarity=0.483 Sum_probs=154.5
Q ss_pred CeEEEEEEEEEEEcCCCCCCCHHHHHHHHHHhhhcceEeCCeeEEEEEceeceeCCeeEecCCCceEEeEEEEEEEeecC
Q psy13107 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPF 80 (170)
Q Consensus 1 Mf~~~~~~~~i~i~P~~l~~~~~~~i~~~l~~~~~gk~~~~~G~~i~i~~i~~~~~g~I~~~~g~~~~~v~f~~i~f~p~ 80 (170)
||++++++++++|||+.+++.+.++|++.|.++++||+.++.|+||+++||.+.++|+|.++||.+++++.|++++|+|+
T Consensus 1 Mf~~~~l~~~i~I~P~~~~~~i~~~I~~~L~~~~~gk~~~~~G~~i~~idi~~~g~~~I~~~d~~~~~~~~~~~i~~~~~ 80 (187)
T 1go3_E 1 MYKILEIADVVKVPPEEFGKDLKETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGEGKVVHGDGSAYHPVVFETLVYIPE 80 (187)
T ss_dssp CEEEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHTTCEETTTEEEEEEEEEEEECCCBCCTTCCSEEEEEEEEEEEECCC
T ss_pred CcEEEEEEEEEEECHHHhCccHHHHHHHHHHHHhCCeEcCCccEEEEEEEEeeccCCEEeCCCccEEEEEEEEEEEEccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEEEecccEEEEecCeeEEEEcCCCCCC-ceecCCCCCeEEEecCceeEEcCCCeEEEEEEEEEecCC---c
Q psy13107 81 KGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDAS---G 156 (170)
Q Consensus 81 ~gev~~g~V~~i~~~Gifv~lg~~~~~i~~~~l~~~-~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~---~ 156 (170)
+||+++|+|++++++|+||++++++|++|.|+++++ +.||+.++.|. +++.+.++++||.|||||.+++.+++ .
T Consensus 81 ~Gev~~G~V~~v~~~G~fV~l~~~eglvhis~l~~~~~~~d~~~~~~~--~~~~~~~~~~Gd~V~vkV~~vd~~~~~p~~ 158 (187)
T 1go3_E 81 MYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPKREAII--GKETGKVLEIGDYVRARIVAISLKAERKRG 158 (187)
T ss_dssp TTCEEEEEEEEEETTEEEEECSSSEEEEEGGGSCSSCEEECCC--CEE--ETTTCCEECTTCEEEEEEEEEECCC-----
T ss_pred CCCEEEEEEEEEeCcEEEEEEcCccEEEEhHHhCCCcceECCccceEE--ecCCCeEEcCCCEEEEEEEEEEcccCCCCc
Confidence 999999999999999999999999999999999877 88999888654 56666799999999999999998776 3
Q ss_pred eEEEEEecCCCCCC
Q psy13107 157 IFAIGTLMDDYLGL 170 (170)
Q Consensus 157 i~~ig~~~~~~LG~ 170 (170)
..+..|+.+++|||
T Consensus 159 ~~I~lS~k~~~LG~ 172 (187)
T 1go3_E 159 SKIALTMRQPYLGK 172 (187)
T ss_dssp CEEEEECCSTTCEE
T ss_pred cEEEEEEcCCCCCc
Confidence 46778999999996
No 9
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2e-31 Score=206.37 Aligned_cols=160 Identities=20% Similarity=0.255 Sum_probs=130.7
Q ss_pred CeEEEEEEEEEEEcCCCCCCCHHHHHHHHHHhhhcceEeCC-eeEEEEEceeceeCC------------eeEecCCCceE
Q psy13107 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGK-YGFVIAVTTIDSIGA------------GLIQPGQGFVV 67 (170)
Q Consensus 1 Mf~~~~~~~~i~i~P~~l~~~~~~~i~~~l~~~~~gk~~~~-~G~~i~i~~i~~~~~------------g~I~~~~g~~~ 67 (170)
||++.++++.|+|+|++|+++...++.+.|+.. ..++..+ .|+|++++|+...++ |+|.+++|.++
T Consensus 37 mF~l~~~~~~V~L~P~~f~~~~~~i~~~~L~~l-l~ky~~~~~Gv~la~~di~~~~~~~~~~d~~~~~~g~I~~~~g~~~ 115 (214)
T 2rf4_A 37 CIVRVPIALYVSLAPMYLENPLQGVMKQHLNPL-VMKYNNKVGGVVLGYEGLKILDADPLSKEDTSEKLIKITPDTPFGF 115 (214)
T ss_dssp CEEEEEEEEEEECCGGGTTCHHHHHHHHHHHHH-BTSEETTTTEEEEEEEEEETTSCCC-----------------CCCE
T ss_pred cEEEEEEEEEEEECHHHhCChhHHHHHHHHHHH-HhcccCCCCEEEEEEECeEeccCCCcCccccccceeEEeCCCceEE
Confidence 999999999999999999987766666778886 5566665 599999999976654 79999999999
Q ss_pred EeEEEEEEEeecCCCCEEEEEEEEEecccEEEE-ecCeeEEEEcCCCCCCceecCCC---CCeEEEecCceeEEcCCCeE
Q psy13107 68 YPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAE-IGPLSCFISHHSIPTDMQFCPNS---NPVCYKSVHGEVVIQEDDEI 143 (170)
Q Consensus 68 ~~v~f~~i~f~p~~gev~~g~V~~i~~~Gifv~-lg~~~~~i~~~~l~~~~~~d~~~---~~~~~~~~~~~~~~~~Gd~V 143 (170)
++|+|++++|+|++||+++|+|+++++.|+.+. +|+|+++||.+.||+++.|++++ ..|+|..+++. ++|++|
T Consensus 116 ~~V~~~~iVFrPf~GevL~G~V~~~s~~~Ig~~~~G~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~---~ig~~I 192 (214)
T 2rf4_A 116 TWCHVNLYVWQPQVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGE---PIDGKL 192 (214)
T ss_dssp EEEEEEEEEECCCTTCEEEEEECCCCSSCEEEEETTTEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCC---BCCSEE
T ss_pred EEEEEEEEEEecCCCCEEEEEEEEECCCcEEEEEeCCEEEEEcHHHCCCcccccccccccCCCceEcCCCC---CCCCEE
Confidence 999999999999999999999999999999984 59999999999999999998776 23445544333 269999
Q ss_pred EEEEEEEEecCCceEEEEEec
Q psy13107 144 RLKIVGTRVDASGIFAIGTLM 164 (170)
Q Consensus 144 rvrV~~v~~~~~~i~~ig~~~ 164 (170)
||||.+++.+.+-+++.|||.
T Consensus 193 RFrV~~~~~~~~~lsI~Gsll 213 (214)
T 2rf4_A 193 RFTVRNVHTTGRVVSVDGTLI 213 (214)
T ss_dssp EEEEEEEECCSSSCEEEEECC
T ss_pred EEEEEEEEecCCEEEEEEEec
Confidence 999999998777788999985
No 10
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.34 E-value=7.5e-15 Score=130.05 Aligned_cols=137 Identities=15% Similarity=0.142 Sum_probs=16.3
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHHhhhcceEeCCeeEEE--------EEceeceeCCeeEecCCCceEEe--EEEEEEEee
Q psy13107 9 HEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVI--------AVTTIDSIGAGLIQPGQGFVVYP--VKYRAIVFR 78 (170)
Q Consensus 9 ~~i~i~P~~l~~~~~~~i~~~l~~~~~gk~~~~~G~~i--------~i~~i~~~~~g~I~~~~g~~~~~--v~f~~i~f~ 78 (170)
..+.-|..++++..++...-+++....+.+++++|..| +-+||.+-+..+|...++...-. ..++.++..
T Consensus 555 ~al~~~r~~~~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~ddG~v~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 555 KAMDAPRADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDINDDGVVKVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp TTCSSCCSSCCSSCCC-------------------------------------------CCSCHHHHHHHHHC-------
T ss_pred HHHHhhhhhhcccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEECCceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 34445667788888888889999999999999999988 34556553334444445433333 368888999
Q ss_pred cCCCCEEEEEEEEEecccEEEEecCe-eEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEEEecCCce
Q psy13107 79 PFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGI 157 (170)
Q Consensus 79 p~~gev~~g~V~~i~~~Gifv~lg~~-~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~i 157 (170)
|.+|++++|+|+++.+||+||++.+. +||+|.|+|++++. ++.+..+++||.|+|||.+++. ++++
T Consensus 635 ~~vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~~rv------------~~~~d~~kvGD~V~VkVi~iD~-~grI 701 (726)
T 4aid_A 635 AEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNERV------------AKPSDVLKEGQMVKVKLLGFDD-RGKT 701 (726)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcCCcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCcccc------------cCccccCCCCCEEEEEEEEECC-CCcE
Confidence 99999999999999999999999774 99999999985521 1223489999999999999986 4554
Q ss_pred E
Q psy13107 158 F 158 (170)
Q Consensus 158 ~ 158 (170)
.
T Consensus 702 ~ 702 (726)
T 4aid_A 702 K 702 (726)
T ss_dssp -
T ss_pred E
Confidence 3
No 11
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.30 E-value=7.1e-12 Score=82.10 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=57.8
Q ss_pred eecCCCCEEEEEEEEEecccEEEEecC-eeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEEEecCC
Q psy13107 77 FRPFKGEVLDAVVTQVNKVGMFAEIGP-LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDAS 155 (170)
Q Consensus 77 f~p~~gev~~g~V~~i~~~Gifv~lg~-~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~ 155 (170)
+.+..|++++|+|++++++|+||++++ .+|++|.|++++++. ..+++||.|+++|.+++.+++
T Consensus 1 m~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~~~----------------~~~~~Gd~V~v~V~~vd~~~~ 64 (80)
T 2k52_A 1 MDVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRL----------------ENLNVGDEIIVQAIDVRPEKR 64 (80)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSCCG----------------GGCCTTCEEEEEEEEEETTTT
T ss_pred CCCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCcccc----------------eeeCCCCEEEEEEEEEECCCC
Confidence 367899999999999999999999986 599999999974421 278999999999999998878
Q ss_pred ceEE
Q psy13107 156 GIFA 159 (170)
Q Consensus 156 ~i~~ 159 (170)
++..
T Consensus 65 ~i~l 68 (80)
T 2k52_A 65 EIDF 68 (80)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 12
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.26 E-value=2.3e-11 Score=91.52 Aligned_cols=69 Identities=10% Similarity=0.106 Sum_probs=52.7
Q ss_pred cCCCCEEEEEEEEEecccEEEEe---cCeeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEEEecCC
Q psy13107 79 PFKGEVLDAVVTQVNKVGMFAEI---GPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDAS 155 (170)
Q Consensus 79 p~~gev~~g~V~~i~~~Gifv~l---g~~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~ 155 (170)
|.+|+++.|+|++++++|+||++ +..+||||.|+|+.++. ++....+++||.|+|+|.+++.+++
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v------------~~~~~~~~vGd~V~VkVl~vD~~~~ 80 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRI------------RSINKLIRIGRNECVVVIRVDKEKG 80 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------------------CTTCEEEEEEEEEETTTT
T ss_pred CCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCccc------------CCHHHhcCCCCEEEEEEEEEECCCC
Confidence 68999999999999999999999 44699999999985421 1123489999999999999998888
Q ss_pred ceEE
Q psy13107 156 GIFA 159 (170)
Q Consensus 156 ~i~~ 159 (170)
++..
T Consensus 81 rI~L 84 (182)
T 1kl9_A 81 YIDL 84 (182)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7765
No 13
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.26 E-value=5e-12 Score=84.42 Aligned_cols=67 Identities=10% Similarity=0.141 Sum_probs=55.9
Q ss_pred eecCCCCEEEEEEEEEecccEEEEec---CeeEEEEcC-CCCCCc-eecCCCCCeEEEecCceeEEcCCCeEEEEEEEEE
Q psy13107 77 FRPFKGEVLDAVVTQVNKVGMFAEIG---PLSCFISHH-SIPTDM-QFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR 151 (170)
Q Consensus 77 f~p~~gev~~g~V~~i~~~Gifv~lg---~~~~~i~~~-~l~~~~-~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~ 151 (170)
..|.+|++++|+|+ ++++|+||+++ ..+|++|.| +|++++ .+. ...+ +||+|+|+|.+++
T Consensus 7 ~~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~-------------~~~~-~Gd~V~VkV~~vd 71 (88)
T 1luz_A 7 SLPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEY-------------RDKL-VGKTVKVKVIRVD 71 (88)
T ss_dssp CCCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHH-------------HHHH-TTCEEEEEEEEEE
T ss_pred cCCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCH-------------hHEe-CCCEEEEEEEEEE
Confidence 46899999999999 99999999995 359999999 998552 211 1255 9999999999999
Q ss_pred ecCCceE
Q psy13107 152 VDASGIF 158 (170)
Q Consensus 152 ~~~~~i~ 158 (170)
.+++++.
T Consensus 72 ~~~~kI~ 78 (88)
T 1luz_A 72 YTKGYID 78 (88)
T ss_dssp TTTTEEE
T ss_pred CCCCEEE
Confidence 8888875
No 14
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.26 E-value=1.8e-13 Score=121.60 Aligned_cols=136 Identities=18% Similarity=0.122 Sum_probs=1.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHhhhcceEeCCeeEEE--------EEceeceeCCeeEecCCCceEE--eEEEEEEEeec
Q psy13107 10 EILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVI--------AVTTIDSIGAGLIQPGQGFVVY--PVKYRAIVFRP 79 (170)
Q Consensus 10 ~i~i~P~~l~~~~~~~i~~~l~~~~~gk~~~~~G~~i--------~i~~i~~~~~g~I~~~~g~~~~--~v~f~~i~f~p 79 (170)
.+.-+..++++..++...-+++....+.+++++|..| +..||.+-+...|...+..... .-.++.+...+
T Consensus 546 al~~~~~~~~~~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~dg~v~I~~~~~~~~~~a~~~i~~i~~~~ 625 (723)
T 3cdi_A 546 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEI 625 (723)
T ss_dssp HCC-----------------------------------------------------------------------------
T ss_pred HhhhcchhccccCceEEEEEECHHHhcccccccceeeeeeehhhCceEEecCCccEEEecCCHHHHHHHHHHHHHHhhhh
Confidence 3444556677788888888999888899999999877 3344554223333333433322 22577788999
Q ss_pred CCCCEEEEEEEEEecccEEEEecCe-eEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEEEecCCceE
Q psy13107 80 FKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIF 158 (170)
Q Consensus 80 ~~gev~~g~V~~i~~~Gifv~lg~~-~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~i~ 158 (170)
.+|++++|+|+++.+||+||++++. +||+|.|+|++++. ++.+..+++||+|+|||.+++. ++++.
T Consensus 626 ~vG~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel~~~~v------------~~~~~~~~vGd~V~VkVi~vd~-~grI~ 692 (723)
T 3cdi_A 626 EVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV------------EKVTDYLQMGQEVPVKVLEVDR-QGRIR 692 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcCcEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCccc------------cCcccccCCCCEEEEEEEEECC-CCcEE
Confidence 9999999999999999999999875 99999999975421 1223489999999999999986 55543
No 15
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.24 E-value=3.5e-11 Score=84.09 Aligned_cols=77 Identities=19% Similarity=0.268 Sum_probs=61.5
Q ss_pred EEEEEeecCCCCEEEEEEEEEecccEEEEecC-eeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEE
Q psy13107 72 YRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGP-LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGT 150 (170)
Q Consensus 72 f~~i~f~p~~gev~~g~V~~i~~~Gifv~lg~-~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v 150 (170)
|..+..++.+|++++|+|++++++|+||++++ .+||+|.++|+.+.. .++....+++||.|+|+|.++
T Consensus 21 ~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~~-----------~~~~~~~~~vGd~V~vkV~~v 89 (115)
T 2khi_A 21 WVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNK-----------NIHPSKVVNVGDVVEVMVLDI 89 (115)
T ss_dssp CCCSSCSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSST-----------TCSSTTTCCTTCEEEEEEEEE
T ss_pred HHHHhhcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCcccc-----------ccCcccEECCCCEEEEEEEEE
Confidence 44445678999999999999999999999987 599999999974310 012234799999999999999
Q ss_pred EecCCceEE
Q psy13107 151 RVDASGIFA 159 (170)
Q Consensus 151 ~~~~~~i~~ 159 (170)
+.+.+++..
T Consensus 90 d~~~~rI~l 98 (115)
T 2khi_A 90 DEERRRISL 98 (115)
T ss_dssp ETTTTEEEE
T ss_pred ECCCCEEEE
Confidence 987777653
No 16
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.23 E-value=2.7e-11 Score=86.41 Aligned_cols=70 Identities=14% Similarity=0.174 Sum_probs=58.1
Q ss_pred ecCCCCEEEEEEEEEecccEEEEecC-eeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEEEecCCc
Q psy13107 78 RPFKGEVLDAVVTQVNKVGMFAEIGP-LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASG 156 (170)
Q Consensus 78 ~p~~gev~~g~V~~i~~~Gifv~lg~-~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~ 156 (170)
.+.+|+++.|+|++++++|+||+++. .+||||.++|++++..+ ....+++||.|+|+|.+++.+.++
T Consensus 4 ~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~~~~~------------~~~~~~vGd~V~vkV~~vd~~~~k 71 (130)
T 2k4k_A 4 KFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKD------------INEHLSVGDEVQVKVLAVDEEKGK 71 (130)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSCCSC------------GGGTCCTTCEEEEEEEEEETTTTE
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCcccccC------------ccccCCCCCEEEEEEEEEeCCCCE
Confidence 57899999999999999999999965 59999999998664321 123799999999999999976676
Q ss_pred eEE
Q psy13107 157 IFA 159 (170)
Q Consensus 157 i~~ 159 (170)
+..
T Consensus 72 I~L 74 (130)
T 2k4k_A 72 ISL 74 (130)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
No 17
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.22 E-value=5.3e-11 Score=89.02 Aligned_cols=69 Identities=10% Similarity=0.110 Sum_probs=52.9
Q ss_pred cCCCCEEEEEEEEEecccEEEEe---cCeeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEEEecCC
Q psy13107 79 PFKGEVLDAVVTQVNKVGMFAEI---GPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDAS 155 (170)
Q Consensus 79 p~~gev~~g~V~~i~~~Gifv~l---g~~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~ 155 (170)
|.+|+++.|+|++++++|+||++ +..+||||.|+|+.++. ++....+++||.|+|+|.+++.+++
T Consensus 13 p~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v------------~~~~~~~~vGd~V~vkVl~vd~~~~ 80 (175)
T 2a19_A 13 PEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRI------------RSIQKLIRVGKNDVAVVLRVDKEKG 80 (175)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------------------CCCCCCCTTSEEEEEEEEEETTTT
T ss_pred CCCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCccc------------CCHHHcCCCCCEEEEEEEEEECCCC
Confidence 45899999999999999999999 34699999999985421 1123489999999999999998877
Q ss_pred ceEE
Q psy13107 156 GIFA 159 (170)
Q Consensus 156 ~i~~ 159 (170)
++..
T Consensus 81 ~I~L 84 (175)
T 2a19_A 81 YIDL 84 (175)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 7765
No 18
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=1.6e-11 Score=84.18 Aligned_cols=66 Identities=12% Similarity=0.253 Sum_probs=54.6
Q ss_pred EeecCCCCEEEEEEEEEecccEEEEecC----eeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEEE
Q psy13107 76 VFRPFKGEVLDAVVTQVNKVGMFAEIGP----LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR 151 (170)
Q Consensus 76 ~f~p~~gev~~g~V~~i~~~Gifv~lg~----~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~ 151 (170)
.+.+.+|++++|+|+++.++|+||+++. .+||+|.|+|++++. .++....+++||.|+|+|.+++
T Consensus 7 ~~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~-----------~~~~~~~~~~Gd~V~VkV~~vd 75 (103)
T 2eqs_A 7 GEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGR-----------VANVADVVSKGQRVKVKVLSFT 75 (103)
T ss_dssp CSSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSC-----------CCCHHHHCCTTCEEEEEEEEEE
T ss_pred cccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcc-----------cCCcccEeCCCCEEEEEEEEEE
Confidence 3568999999999999999999999983 599999999965531 1222347999999999999997
Q ss_pred e
Q psy13107 152 V 152 (170)
Q Consensus 152 ~ 152 (170)
.
T Consensus 76 ~ 76 (103)
T 2eqs_A 76 G 76 (103)
T ss_dssp T
T ss_pred C
Confidence 5
No 19
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=7e-12 Score=88.21 Aligned_cols=72 Identities=13% Similarity=0.216 Sum_probs=60.2
Q ss_pred EEEEEEeecCCCCEEEEEEEEEecccEEEEecCe--eEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEE
Q psy13107 71 KYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL--SCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIV 148 (170)
Q Consensus 71 ~f~~i~f~p~~gev~~g~V~~i~~~Gifv~lg~~--~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~ 148 (170)
.++.+.+.|.+|+++.|+|+++.++|+||+++.. +||+|.++|++++. ++....+++||.|+|+|.
T Consensus 12 ~~~~~~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~------------~~~~~~~~~Gd~V~VkV~ 79 (119)
T 2cqo_A 12 RPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRV------------DKPSEIVDVGDKVWVKLI 79 (119)
T ss_dssp CCCCSCCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCC------------SCHHHHCCTTCEEEEEEE
T ss_pred chhhhhcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccc------------cChhhcCCCCCEEEEEEE
Confidence 4566678899999999999999999999999664 99999999985531 122347999999999999
Q ss_pred EEEecC
Q psy13107 149 GTRVDA 154 (170)
Q Consensus 149 ~v~~~~ 154 (170)
+++.++
T Consensus 80 ~vd~~~ 85 (119)
T 2cqo_A 80 GREMKN 85 (119)
T ss_dssp EEEECS
T ss_pred EEeccc
Confidence 999864
No 20
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.14 E-value=6.7e-11 Score=81.82 Aligned_cols=71 Identities=20% Similarity=0.268 Sum_probs=58.2
Q ss_pred eecCCCCEEEEEEEEEecccEEEEecC-eeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEEEecCC
Q psy13107 77 FRPFKGEVLDAVVTQVNKVGMFAEIGP-LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDAS 155 (170)
Q Consensus 77 f~p~~gev~~g~V~~i~~~Gifv~lg~-~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~ 155 (170)
..+.+|+++.|+|++++++|+||++++ .+||+|.+++++++. ++....+++||.|+|+|.+++.+.+
T Consensus 27 ~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~~~------------~~~~~~~~vGd~V~v~V~~vd~~~~ 94 (109)
T 2khj_A 27 ALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRV------------EDATLVLSVGDEVEAKFTGVDRKNR 94 (109)
T ss_dssp TTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSSSS------------SSGGGSCCTTCEEEEEEEEEETTTT
T ss_pred hcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCcccc------------cChhhccCCCCEEEEEEEEEECCCC
Confidence 356799999999999999999999986 599999999985531 1122379999999999999988766
Q ss_pred ceEE
Q psy13107 156 GIFA 159 (170)
Q Consensus 156 ~i~~ 159 (170)
++..
T Consensus 95 ki~L 98 (109)
T 2khj_A 95 AISL 98 (109)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
No 21
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.12 E-value=4.6e-11 Score=83.89 Aligned_cols=79 Identities=9% Similarity=0.107 Sum_probs=58.9
Q ss_pred ecCCCCEEEEEEEEEecccEEEEec-Ce-eEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEEEecCC
Q psy13107 78 RPFKGEVLDAVVTQVNKVGMFAEIG-PL-SCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDAS 155 (170)
Q Consensus 78 ~p~~gev~~g~V~~i~~~Gifv~lg-~~-~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~ 155 (170)
.+.+|++++|+|+++.++|+||+++ .. ++++|.+.+.+.+.++.. +..+++||.|+|+|.+++.+++
T Consensus 18 ~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~-----------~~~~~~Gd~V~vkV~~vd~~~~ 86 (119)
T 1wi5_A 18 ALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNK-----------GAKLKVGQYLNCIVEKVKGNGG 86 (119)
T ss_dssp TCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSS-----------SCCCCTTCEEEEEEEECCTTSC
T ss_pred cCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccccCc-----------cCEeCCCCEEEEEEEEEeCCCC
Confidence 4679999999999999999999999 34 555555443211333322 2389999999999999987777
Q ss_pred ceEEEEEecCCCCC
Q psy13107 156 GIFAIGTLMDDYLG 169 (170)
Q Consensus 156 ~i~~ig~~~~~~LG 169 (170)
++.. ++.++.||
T Consensus 87 ~i~L--slk~~~l~ 98 (119)
T 1wi5_A 87 VVSL--SVGHSEVS 98 (119)
T ss_dssp EEEE--ECCCCCSC
T ss_pred EEEE--EEchhhcc
Confidence 6655 67777776
No 22
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=98.99 E-value=2.1e-09 Score=94.82 Aligned_cols=84 Identities=19% Similarity=0.283 Sum_probs=70.3
Q ss_pred EEEEEeecCCCC--EEEEEEEEEecccEEEEec-C-eeEEEEcCCCCC--C-ceecCCCCCeEEEecCceeEEcCCCeEE
Q psy13107 72 YRAIVFRPFKGE--VLDAVVTQVNKVGMFAEIG-P-LSCFISHHSIPT--D-MQFCPNSNPVCYKSVHGEVVIQEDDEIR 144 (170)
Q Consensus 72 f~~i~f~p~~ge--v~~g~V~~i~~~Gifv~lg-~-~~~~i~~~~l~~--~-~~~d~~~~~~~~~~~~~~~~~~~Gd~Vr 144 (170)
+++.++++++|+ +++|+|++++++|+||++. . .+|+||.++|++ + |.||+... ++.. +++..|++||+|+
T Consensus 549 ~~~~~l~~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~--~l~~-~~~~~~~lGD~V~ 625 (644)
T 2id0_A 549 LYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENG--TVQI-KGETVYKVTDVID 625 (644)
T ss_dssp HHHHHHGGGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTT--EEEE-TTEEEEETTCEEE
T ss_pred HHHHHhhhccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEccccc--EEEe-cCCCEeCCCCEEE
Confidence 345567889999 9999999999999999995 4 499999999984 5 88988776 3423 5567999999999
Q ss_pred EEEEEEEecCCceE
Q psy13107 145 LKIVGTRVDASGIF 158 (170)
Q Consensus 145 vrV~~v~~~~~~i~ 158 (170)
|+|.+++.+++++.
T Consensus 626 VkV~~vd~~~~~I~ 639 (644)
T 2id0_A 626 VTIAEVRMETRSII 639 (644)
T ss_dssp EEEEEEETTTTEEE
T ss_pred EEEEEEeCCCCEEE
Confidence 99999998887765
No 23
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=98.98 E-value=1.3e-09 Score=86.86 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=57.9
Q ss_pred ecCCCCEEEEEEEEEecccEEEEec---CeeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEEEecC
Q psy13107 78 RPFKGEVLDAVVTQVNKVGMFAEIG---PLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDA 154 (170)
Q Consensus 78 ~p~~gev~~g~V~~i~~~Gifv~lg---~~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~ 154 (170)
.|.+|+++.|+|+++.++|+||+++ ..+||+|.|+|++++.. +....+++||.|+|+|.+++.+.
T Consensus 8 ~p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~------------~~~~~~kvGd~V~vkVi~vD~~~ 75 (275)
T 3aev_A 8 YPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVR------------NIRDYLKEGQKVVAKVIRVDPRK 75 (275)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCS------------CGGGTCCTTCEEEEEEEEEETTT
T ss_pred CCCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCccccc------------CHHhccCCCCEEEEEEEEEECCC
Confidence 3668999999999999999999997 35999999999855321 11237999999999999999877
Q ss_pred CceEE
Q psy13107 155 SGIFA 159 (170)
Q Consensus 155 ~~i~~ 159 (170)
+++..
T Consensus 76 ~~I~L 80 (275)
T 3aev_A 76 GHIDL 80 (275)
T ss_dssp TEEEE
T ss_pred CEEEE
Confidence 77654
No 24
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=98.94 E-value=3.6e-12 Score=113.68 Aligned_cols=128 Identities=18% Similarity=0.189 Sum_probs=47.3
Q ss_pred CCCCCCHHHHHHHHHHhhhcceEeCCeeEEE--------EEceeceeCCeeEec--CCCceEE--eEEEEEEE--eecCC
Q psy13107 16 RYFGPQLYETVKQKLYSEVEGTCTGKYGFVI--------AVTTIDSIGAGLIQP--GQGFVVY--PVKYRAIV--FRPFK 81 (170)
Q Consensus 16 ~~l~~~~~~~i~~~l~~~~~gk~~~~~G~~i--------~i~~i~~~~~g~I~~--~~g~~~~--~v~f~~i~--f~p~~ 81 (170)
.++++..++...-+++.+..+.++++.|..| +.+||.+ +|.+.- .+....- +-.++.+. ..+.+
T Consensus 590 ~~~~~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~--dG~v~Is~~~~~~~~~a~~~i~~i~~p~~~~v 667 (757)
T 1e3p_A 590 DEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED--DGTIYIGAADGPAAEAARATINGIANPTSPEV 667 (757)
T ss_dssp CCCCTTSCBCCCC------------------CTTCCCCCSCC----------CCCBSSHHHHCC----------------
T ss_pred ccccccCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC--CceEEEecCCHHHHHHHHHHHHHhcchhhccc
Confidence 4455555555555566666677777777777 3455654 555553 2322211 22456677 78999
Q ss_pred CCEEEEEEEEEecccEEEEecCe-eEEEEcCCC----CCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEEEecCCc
Q psy13107 82 GEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSI----PTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASG 156 (170)
Q Consensus 82 gev~~g~V~~i~~~Gifv~lg~~-~~~i~~~~l----~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~ 156 (170)
|++++|+|+++.+||+||++.+. +||+|.|+| ++++. ++....+++||+|+|||.+++. +++
T Consensus 668 G~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s~~rv------------~~~~~~~~vGd~V~VkVi~vd~-~gr 734 (757)
T 1e3p_A 668 GERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRV------------ENVEDVLGVGQKVQVEIAEIDS-RGK 734 (757)
T ss_dssp -----CBEEECC-CSCEECCC---CCCCC-------------------------------CCSSCBCCCCCCCCCS-SCC
T ss_pred ccEEEEEEEEccccEEEEEEcCCcEEEEEhHHhccccCCCcc------------cCcccccCCCCEEEEEEEEECC-CCC
Confidence 99999999999999999999775 999999999 54321 1223489999999999999986 566
Q ss_pred eE
Q psy13107 157 IF 158 (170)
Q Consensus 157 i~ 158 (170)
+.
T Consensus 735 I~ 736 (757)
T 1e3p_A 735 LS 736 (757)
T ss_dssp --
T ss_pred EE
Confidence 54
No 25
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=98.93 E-value=2.3e-09 Score=86.54 Aligned_cols=69 Identities=12% Similarity=0.121 Sum_probs=57.1
Q ss_pred cCCCCEEEEEEEEEecccEEEEec---CeeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEEEecCC
Q psy13107 79 PFKGEVLDAVVTQVNKVGMFAEIG---PLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDAS 155 (170)
Q Consensus 79 p~~gev~~g~V~~i~~~Gifv~lg---~~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~ 155 (170)
|.+|+++.|+|++++++|+||+++ ..+||+|.|+|+.++. ++-...+++||.|+|+|.+++.+++
T Consensus 11 ~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i------------~~~~~~~kvGd~V~VkVl~vD~~~~ 78 (308)
T 1q8k_A 11 PEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRI------------RSINKLIRIGRNECVKVIRVDKEKG 78 (308)
T ss_dssp CSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSC------------SCCTTTCSSSCEEEEEEEEEETTTT
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccc------------cCHHHhcCCCCEEEEEEEEEeCCCC
Confidence 458999999999999999999996 3599999999975421 1112379999999999999998777
Q ss_pred ceEE
Q psy13107 156 GIFA 159 (170)
Q Consensus 156 ~i~~ 159 (170)
++..
T Consensus 79 rI~L 82 (308)
T 1q8k_A 79 YIDL 82 (308)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7664
No 26
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=98.91 E-value=1.5e-09 Score=83.19 Aligned_cols=82 Identities=15% Similarity=0.104 Sum_probs=63.5
Q ss_pred EeecCCCCEEEEEEEEEecccEEEEec---------CeeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEE
Q psy13107 76 VFRPFKGEVLDAVVTQVNKVGMFAEIG---------PLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLK 146 (170)
Q Consensus 76 ~f~p~~gev~~g~V~~i~~~Gifv~lg---------~~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~Vrvr 146 (170)
.+.|.+|+++.|+|++++++|+||+++ +++|+||.+++..... +.. +-...+++||.|++|
T Consensus 76 ~y~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~-~~~---------~~~~~l~~GD~V~ak 145 (209)
T 2nn6_I 76 QLLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEK-DKV---------EIYKSFRPGDIVLAK 145 (209)
T ss_dssp CCCCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSS-CCC---------CGGGTCCSSSEEEEE
T ss_pred cCCCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccc-ccc---------chhhhcCCCCEEEEE
Confidence 368999999999999999999999985 4699999999874421 000 112379999999999
Q ss_pred EEEEEecCCceEEEEEecCCCCC
Q psy13107 147 IVGTRVDASGIFAIGTLMDDYLG 169 (170)
Q Consensus 147 V~~v~~~~~~i~~ig~~~~~~LG 169 (170)
|.+++-+..++.. |+.++.||
T Consensus 146 Visi~~~~~~i~L--S~k~~~lG 166 (209)
T 2nn6_I 146 VISLGDAQSNYLL--TTAENELG 166 (209)
T ss_dssp EEEEETTTTEEEE--ECCSSSCE
T ss_pred EEEEeCCCCeEEE--EEecCCCc
Confidence 9999644444555 78888888
No 27
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.82 E-value=1.1e-09 Score=97.95 Aligned_cols=70 Identities=21% Similarity=0.341 Sum_probs=60.1
Q ss_pred ecCCCCEEEEEEEEEecccEEEEecCe-eEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEEEecCCc
Q psy13107 78 RPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASG 156 (170)
Q Consensus 78 ~p~~gev~~g~V~~i~~~Gifv~lg~~-~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~ 156 (170)
...+|++++|+|+++++||+||+++.. +|+||.|+|++++.+++ +..+++||.|+|||.+++.++++
T Consensus 651 ~l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd~~v~d~------------~~~~~vGd~V~VkVi~VD~~~~r 718 (785)
T 3bzc_A 651 DLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDP------------YEVVKAGDIVKVKVMEVDIPRNR 718 (785)
T ss_dssp TCCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCSSCCSCH------------HHHCCTTCCCCCBEEEEETTTTE
T ss_pred hcCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCccccCCh------------hheeCCCCEEEEEEEEEECCCCE
Confidence 357999999999999999999999875 99999999986555432 23899999999999999988777
Q ss_pred eEE
Q psy13107 157 IFA 159 (170)
Q Consensus 157 i~~ 159 (170)
+..
T Consensus 719 I~L 721 (785)
T 3bzc_A 719 VGL 721 (785)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 28
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=98.81 E-value=9.5e-09 Score=76.97 Aligned_cols=74 Identities=9% Similarity=0.102 Sum_probs=58.8
Q ss_pred EeecCCCCEEEEEEEEEecccEEEEecC-----------eeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEE
Q psy13107 76 VFRPFKGEVLDAVVTQVNKVGMFAEIGP-----------LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIR 144 (170)
Q Consensus 76 ~f~p~~gev~~g~V~~i~~~Gifv~lg~-----------~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~Vr 144 (170)
-+.|. |+++.|+|+++.++|+||+++. ++|++|.|++.+... . +-...+++||.|+
T Consensus 53 ~y~p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~----~--------~~~~~~~~GD~V~ 119 (179)
T 3m7n_A 53 PEIVK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYV----K--------EISEAVGYLDILK 119 (179)
T ss_dssp CCCCT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCC----S--------SGGGTCCTTCEEE
T ss_pred cccCC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchh----h--------CHhhcCCCCCEEE
Confidence 36788 9999999999999999999964 599999999985421 1 1123899999999
Q ss_pred EEEEEEEecCCceEEEEEecCCCCC
Q psy13107 145 LKIVGTRVDASGIFAIGTLMDDYLG 169 (170)
Q Consensus 145 vrV~~v~~~~~~i~~ig~~~~~~LG 169 (170)
++|.+ +++.. |+.++.||
T Consensus 120 akVi~-----~~i~L--S~k~~~lG 137 (179)
T 3m7n_A 120 ARVIG-----DNLRL--STKEEEMG 137 (179)
T ss_dssp EEEEE-----TTTEE--ECCSTTCE
T ss_pred EEEEC-----CeEEE--EEecCCCC
Confidence 99998 55555 66677766
No 29
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=98.78 E-value=1.4e-08 Score=94.48 Aligned_cols=70 Identities=10% Similarity=0.112 Sum_probs=60.0
Q ss_pred ecCCCCEEEEEEEEEecccEEEEecCe-eEEEEcCCCCCCc-eecCCCCCeEEEecCceeEEcCCCeEEEEEEEEEecCC
Q psy13107 78 RPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDM-QFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDAS 155 (170)
Q Consensus 78 ~p~~gev~~g~V~~i~~~Gifv~lg~~-~~~i~~~~l~~~~-~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~ 155 (170)
...+|++++|+|+++++||+||+++.. +|+||.|+|++++ ..++.. .+++||.|+|||.+++.++.
T Consensus 899 ~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~------------v~kvGd~V~vkVl~VD~~~~ 966 (1219)
T 3psi_A 899 TFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANE------------IYEIGKTYPAKVIYIDYANI 966 (1219)
T ss_dssp TSCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSSTTSCSCSTT------------TSCTTCEEEEEEEEEEGGGT
T ss_pred hCCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCCcccCCHHH------------cCCCCCEEEEEEEEEECCCC
Confidence 356999999999999999999999875 9999999999774 444432 78999999999999998877
Q ss_pred ceEE
Q psy13107 156 GIFA 159 (170)
Q Consensus 156 ~i~~ 159 (170)
++..
T Consensus 967 rI~L 970 (1219)
T 3psi_A 967 TAEV 970 (1219)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
No 30
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=98.73 E-value=1.5e-08 Score=92.82 Aligned_cols=79 Identities=13% Similarity=0.088 Sum_probs=67.4
Q ss_pred EEEEEeecCCCCEEEEEEEEEecccEEEEecC--eeEEEEcCCCC--CC-ceecCCCCCeEEEecC----ceeEEcCCCe
Q psy13107 72 YRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGP--LSCFISHHSIP--TD-MQFCPNSNPVCYKSVH----GEVVIQEDDE 142 (170)
Q Consensus 72 f~~i~f~p~~gev~~g~V~~i~~~Gifv~lg~--~~~~i~~~~l~--~~-~~~d~~~~~~~~~~~~----~~~~~~~Gd~ 142 (170)
+++.++++. |++++|+|++++++|+||.+.. ++|+||.++|+ ++ |.||+..+ ++.+++ .+..|++||+
T Consensus 878 ~~~~~l~~~-ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~--~L~g~~~~g~~~~~~~lGD~ 954 (977)
T 2wp8_J 878 YVGQVMRNN-ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEY--KLTFVPTNSDKPRDVYVFDK 954 (977)
T ss_dssp HHHHHHHHT-TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTT--EEEECCTTCCSCEEEETTCE
T ss_pred HHhhhhccc-ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEccccc--EEEeecCCCccCcEEccCCE
Confidence 344556777 9999999999999999999986 49999999997 66 89998887 677775 3579999999
Q ss_pred EEEEEEEEEec
Q psy13107 143 IRLKIVGTRVD 153 (170)
Q Consensus 143 VrvrV~~v~~~ 153 (170)
|+|+|.+++.+
T Consensus 955 V~VkV~~vd~~ 965 (977)
T 2wp8_J 955 VEVQVRSVMDP 965 (977)
T ss_dssp EEEEECCCCCS
T ss_pred EEEEEEEEcCc
Confidence 99999999763
No 31
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=98.73 E-value=2.3e-09 Score=85.03 Aligned_cols=70 Identities=20% Similarity=0.322 Sum_probs=57.1
Q ss_pred ecCCCCEEEEEEEEEecccEEEEec--C-eeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEEEecC
Q psy13107 78 RPFKGEVLDAVVTQVNKVGMFAEIG--P-LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDA 154 (170)
Q Consensus 78 ~p~~gev~~g~V~~i~~~Gifv~lg--~-~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~ 154 (170)
.|.+|+++.|+|+++.++|+||+++ + .+||+|.|++++++. ++....+++||.|+|+|.+++.+.
T Consensus 8 ~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v------------~~~~~~~~vGd~V~VkVi~vd~~~ 75 (266)
T 3cw2_C 8 LPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWV------------KNIRDVLKENRKVIVKVIRVDRRK 75 (266)
T ss_dssp SCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSC------------CCHHHHSCTTCEEEEEECCCCSSS
T ss_pred cCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcccc------------cCHHHhCcCCCEEEEEEEEEeCCC
Confidence 4789999999999999999999996 4 599999999975521 122347999999999999998766
Q ss_pred CceEE
Q psy13107 155 SGIFA 159 (170)
Q Consensus 155 ~~i~~ 159 (170)
+++..
T Consensus 76 g~I~L 80 (266)
T 3cw2_C 76 GTVDV 80 (266)
T ss_dssp CCCBE
T ss_pred CEEEE
Confidence 66544
No 32
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=98.72 E-value=2.1e-08 Score=89.90 Aligned_cols=84 Identities=12% Similarity=0.065 Sum_probs=64.8
Q ss_pred EEEEEeecCCCCEEEEEEEEEecccEEEEecC--eeEEEEcCCCC--CC-ceecCCCCCeEEEecCc----eeEEcCCCe
Q psy13107 72 YRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGP--LSCFISHHSIP--TD-MQFCPNSNPVCYKSVHG----EVVIQEDDE 142 (170)
Q Consensus 72 f~~i~f~p~~gev~~g~V~~i~~~Gifv~lg~--~~~~i~~~~l~--~~-~~~d~~~~~~~~~~~~~----~~~~~~Gd~ 142 (170)
+.+.+++... ++++|+|++++++|+||.+.. ++|+||.++|. ++ |.||+..+ ++.++++ +..|++||+
T Consensus 661 ~~~~~l~~~~-~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~--~l~g~~~~~~~~~~~~lGD~ 737 (760)
T 2vnu_D 661 YVGQVMRNNE-STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEY--KLTFVPTNSDKPRDVYVFDK 737 (760)
T ss_dssp HHHHHHHTCC-SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTT--EEEECCTTCSSCEEEETTCE
T ss_pred HHHHHhhcCc-eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEccccc--EEEEecCCCccCcEEecCCE
Confidence 3444567777 999999999999999999976 49999999995 66 89998877 5666654 579999999
Q ss_pred EEEEEEEEEec---CCceE
Q psy13107 143 IRLKIVGTRVD---ASGIF 158 (170)
Q Consensus 143 VrvrV~~v~~~---~~~i~ 158 (170)
|+|+|.+++.+ ++++.
T Consensus 738 V~VkV~~vd~~~~~~~kI~ 756 (760)
T 2vnu_D 738 VEVQVRSVMDPITSKRKAE 756 (760)
T ss_dssp EEEEEC--------CCEEE
T ss_pred EEEEEEEEECccccCCcEE
Confidence 99999999876 35543
No 33
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.70 E-value=1.9e-08 Score=79.12 Aligned_cols=82 Identities=11% Similarity=0.138 Sum_probs=63.8
Q ss_pred EeecCCCCEEEEEEEEEecccEEEEecC-eeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEEEecC
Q psy13107 76 VFRPFKGEVLDAVVTQVNKVGMFAEIGP-LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDA 154 (170)
Q Consensus 76 ~f~p~~gev~~g~V~~i~~~Gifv~lg~-~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~ 154 (170)
.|.|.+|+++.|+|++++++|+||+++. ++|++|.+++.+... ++.. +-...+++||.|++||.+++-+
T Consensus 69 ~y~p~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~~~~-~~~~--------~~~~~l~vGD~V~arVi~v~~~- 138 (251)
T 2je6_I 69 FYYPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSI-NVGE--------DLRRYLDVGDYVIARIENFDRS- 138 (251)
T ss_dssp CCCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCC-CTTC--------CCSSSCCTTCEEEEEEEEEETT-
T ss_pred ccCCCCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcCCcc-cccc--------chhhcCCCCCEEEEEEEEECCC-
Confidence 3789999999999999999999999985 699999999975311 1101 1123899999999999999743
Q ss_pred CceEEEEEecCCCCC
Q psy13107 155 SGIFAIGTLMDDYLG 169 (170)
Q Consensus 155 ~~i~~ig~~~~~~LG 169 (170)
+++.. |+.+++||
T Consensus 139 ~~i~L--S~r~~~lG 151 (251)
T 2je6_I 139 IDPVL--SVKGKDLG 151 (251)
T ss_dssp EEEEE--ECCSTTCE
T ss_pred CcEEE--EEccccCC
Confidence 34444 67888887
No 34
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.69 E-value=3.8e-08 Score=76.44 Aligned_cols=78 Identities=18% Similarity=0.247 Sum_probs=63.1
Q ss_pred eecCCCCEEEEEEEEEecccEEEEecC-eeEEEEcCCCCCC-ceecCCCCCeEEEecCceeEEcCCCeEEEEEEEEEecC
Q psy13107 77 FRPFKGEVLDAVVTQVNKVGMFAEIGP-LSCFISHHSIPTD-MQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDA 154 (170)
Q Consensus 77 f~p~~gev~~g~V~~i~~~Gifv~lg~-~~~~i~~~~l~~~-~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~ 154 (170)
|.|.+|+++.|+|++++++|+||+++. .+|++|.+++... +. ++....+++||.|++||.+++-+
T Consensus 53 y~p~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev~~~~~~------------~~~~~~l~~GD~V~arVi~v~~~- 119 (229)
T 2ba0_A 53 YTPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPN------------KKPNEVLDIGDAIIAKVLNIDPK- 119 (229)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCTT------------SCGGGTCCTTCEEEEEEEEECTT-
T ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHccccccc------------cchhcccCCCCEEEEEEEEECCC-
Confidence 789999999999999999999999985 6999999999732 11 12223899999999999999643
Q ss_pred CceEEEEEecCCCCC
Q psy13107 155 SGIFAIGTLMDDYLG 169 (170)
Q Consensus 155 ~~i~~ig~~~~~~LG 169 (170)
+++.. |+.+++||
T Consensus 120 ~~i~L--S~r~~~lG 132 (229)
T 2ba0_A 120 MKVTL--TMKDRICR 132 (229)
T ss_dssp CCEEE--ECCSSSCE
T ss_pred CcEEE--EEccccCC
Confidence 44444 77888887
No 35
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=98.64 E-value=3.4e-09 Score=97.18 Aligned_cols=70 Identities=10% Similarity=0.102 Sum_probs=0.0
Q ss_pred ecCCCCEEEEEEEEEecccEEEEecCe-eEEEEcCCCCCCc-eecCCCCCeEEEecCceeEEcCCCeEEEEEEEEEecCC
Q psy13107 78 RPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDM-QFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDAS 155 (170)
Q Consensus 78 ~p~~gev~~g~V~~i~~~Gifv~lg~~-~~~i~~~~l~~~~-~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~ 155 (170)
...+|++++|+|+++++||+||.++.. +|+||.|+|++++ ..++. ..+++||.|+|||.+++.+++
T Consensus 902 ~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~~~------------~v~kvGd~V~vkVl~VD~~~~ 969 (1030)
T 3psf_A 902 TFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPAN------------EIYEIGKTYPAKVIYIDYANI 969 (1030)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCCCcccCCHH------------HcCCCCCEEEEEEEEEECCCC
Confidence 346899999999999999999999875 9999999998664 33322 389999999999999998777
Q ss_pred ceEE
Q psy13107 156 GIFA 159 (170)
Q Consensus 156 ~i~~ 159 (170)
++..
T Consensus 970 rI~L 973 (1030)
T 3psf_A 970 TAEV 973 (1030)
T ss_dssp ----
T ss_pred EEEE
Confidence 7653
No 36
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.63 E-value=3.2e-08 Score=77.12 Aligned_cols=82 Identities=20% Similarity=0.318 Sum_probs=63.1
Q ss_pred eecCCCCEEEEEEEEEecccEEEEecC-eeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEEEecCC
Q psy13107 77 FRPFKGEVLDAVVTQVNKVGMFAEIGP-LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDAS 155 (170)
Q Consensus 77 f~p~~gev~~g~V~~i~~~Gifv~lg~-~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~ 155 (170)
|.|.+|+++.|+|++++++|+||+++. ++|++|.+++.+. ..++.. .+-...+++||.|++||.+++-+ +
T Consensus 62 y~p~~GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei~~~-~~~~~~-------~~~~~~l~~GD~V~a~Vi~v~~~-~ 132 (235)
T 2z0s_A 62 YVPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGR-PFNPAV-------DDMQSLLKVGDYIKAKVVAFDKT-R 132 (235)
T ss_dssp CCCCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTS-CCCTTT-------TCCTTSSCTTCEEEEEEEEECTT-S
T ss_pred cCCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHhCCC-ccccch-------hhHhhcCCCCCEEEEEEEEECCC-C
Confidence 789999999999999999999999985 6999999999742 001111 11123899999999999999733 3
Q ss_pred ceEEEEEecCCCCC
Q psy13107 156 GIFAIGTLMDDYLG 169 (170)
Q Consensus 156 ~i~~ig~~~~~~LG 169 (170)
++.. |+.+++||
T Consensus 133 ~i~L--S~k~~~lG 144 (235)
T 2z0s_A 133 SPLL--TVQGEGLG 144 (235)
T ss_dssp CEEE--ECCSSSCE
T ss_pred cEEE--EEecccCc
Confidence 4555 67788887
No 37
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=98.53 E-value=2.8e-07 Score=73.72 Aligned_cols=64 Identities=14% Similarity=0.144 Sum_probs=55.2
Q ss_pred CCCCEEEEEEEEEecccEEE-EecC-eeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEEEecCCce
Q psy13107 80 FKGEVLDAVVTQVNKVGMFA-EIGP-LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGI 157 (170)
Q Consensus 80 ~~gev~~g~V~~i~~~Gifv-~lg~-~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~i 157 (170)
.+|++++|+|.+++++|+|| .+++ .+||||.|++.+ .+++||+|+++|.+++-+.+++
T Consensus 151 ~~G~~V~g~V~~i~~~G~fV~~i~~g~~Glih~SEl~~--------------------~l~~Gd~v~~~V~~id~~d~kI 210 (285)
T 3go5_A 151 MQNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERYA--------------------EPRLGQVLDARVIGFREVDRTL 210 (285)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTTTEEEEECGGGCSS--------------------CCCTTCEEEEEEEEEETTTTEE
T ss_pred CCCCEEEEEEEEEeCCcEEEEEeCCCeEEEEEHHHccc--------------------cCCCCCEEEEEEEEEECCCCeE
Confidence 58999999999999999999 9976 599999999851 4799999999999999777777
Q ss_pred EEEEEecC
Q psy13107 158 FAIGTLMD 165 (170)
Q Consensus 158 ~~ig~~~~ 165 (170)
.. |+.+
T Consensus 211 ~L--Slk~ 216 (285)
T 3go5_A 211 NL--SLKP 216 (285)
T ss_dssp EE--ECSC
T ss_pred EE--EeCh
Confidence 65 5553
No 38
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=98.52 E-value=1.2e-07 Score=70.67 Aligned_cols=80 Identities=14% Similarity=0.113 Sum_probs=63.1
Q ss_pred eecCCCCEEEEEEEEEecccEEEEecC--eeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEEEecC
Q psy13107 77 FRPFKGEVLDAVVTQVNKVGMFAEIGP--LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDA 154 (170)
Q Consensus 77 f~p~~gev~~g~V~~i~~~Gifv~lg~--~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~ 154 (170)
|.|..|+++.|+|+++..++++|++++ .++++|.++++.. . ++....+++||.|+.||.+++.+
T Consensus 3 Y~P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~g~------~-------k~~r~~l~~GDlV~ArV~~~~~~- 68 (175)
T 2ja9_A 3 YIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNA------S-------KKNRPTLQVGDLVYARVCTAEKE- 68 (175)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSSTTC------C-------SSSCCCCCTTCEEEEEEEECCTT-
T ss_pred ccCCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCCch------h-------hhhhccCCCCCEEEEEEEEecCC-
Confidence 789999999999999999999999988 4999999988622 1 22345899999999999998643
Q ss_pred CceEE--EE--EecCCCCCC
Q psy13107 155 SGIFA--IG--TLMDDYLGL 170 (170)
Q Consensus 155 ~~i~~--ig--~~~~~~LG~ 170 (170)
.++.. +. ++.+++||+
T Consensus 69 ~~~~Ltc~~~~~~r~~~lG~ 88 (175)
T 2ja9_A 69 LEAEIECFDSTTGRDAGFGI 88 (175)
T ss_dssp SCCEEESSCTTTCSCTTCEE
T ss_pred CceEEEecccccccccCCcC
Confidence 23433 22 277888884
No 39
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.33 E-value=3.5e-07 Score=73.83 Aligned_cols=88 Identities=13% Similarity=0.086 Sum_probs=61.9
Q ss_pred eecCCCCEEEEEEEEEecccEEEEecC-eeEEEEcCCCCCC-ceecCCCCCeEEEecCceeEEcCCCeEEEEEEEEEecC
Q psy13107 77 FRPFKGEVLDAVVTQVNKVGMFAEIGP-LSCFISHHSIPTD-MQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDA 154 (170)
Q Consensus 77 f~p~~gev~~g~V~~i~~~Gifv~lg~-~~~~i~~~~l~~~-~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~ 154 (170)
|.|.+|+++.|+|++++++++||+++. .++++|.+++..+ .... .+. .-...+....+++||.|++||.+++ +.
T Consensus 91 Y~P~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~f~gg~iR-~~~--~~D~~~m~~~l~vGDlV~ArVisv~-~~ 166 (308)
T 2nn6_H 91 YIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR-RRS--AEDELAMRGFLQEGDLISAEVQAVF-SD 166 (308)
T ss_dssp CCCCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC----------------CHHHHHHSCSSCEECCEEEEEE-TT
T ss_pred cCCCCCCEEEEEEEEEeCceEEEEECCCcCCceechhhccccceee-ccc--chhhhhhhccCCCCCEEEEEEEEcC-CC
Confidence 689999999999999999999999985 6999999988532 1110 000 0000112247999999999999998 33
Q ss_pred CceEEEEEecCCCCCC
Q psy13107 155 SGIFAIGTLMDDYLGL 170 (170)
Q Consensus 155 ~~i~~ig~~~~~~LG~ 170 (170)
..+.. |+.+++||+
T Consensus 167 ~~i~L--Str~~~LGk 180 (308)
T 2nn6_H 167 GAVSL--HTRSLKYGK 180 (308)
T ss_dssp TEEEE--ECCSSTTCE
T ss_pred CCEEE--EecCcCCcc
Confidence 34434 778899983
No 40
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=98.31 E-value=3.4e-07 Score=62.29 Aligned_cols=60 Identities=20% Similarity=0.391 Sum_probs=52.1
Q ss_pred CCeeEecCCCceEEeEEEEEEE------eecCCCCEEEEEEEEEecccEEEEecC-eeEEEEcCCCC
Q psy13107 55 GAGLIQPGQGFVVYPVKYRAIV------FRPFKGEVLDAVVTQVNKVGMFAEIGP-LSCFISHHSIP 114 (170)
Q Consensus 55 ~~g~I~~~~g~~~~~v~f~~i~------f~p~~gev~~g~V~~i~~~Gifv~lg~-~~~~i~~~~l~ 114 (170)
+-|.|.+.+|....-|.+.++. -+|..|++++++|++++++|+|+++.+ .+|++|.|+|+
T Consensus 29 GfGFI~~~~gg~dvfvH~s~l~~~~~~~~~l~~Ge~V~g~V~~i~~fG~fv~l~~~~eGlvhis~i~ 95 (101)
T 2bh8_A 29 GFGFITPDDGSKDVFVHFSAGSSGAAVRGNPQQGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDIS 95 (101)
T ss_dssp TEEEEEESSSSCEEEEECCCSCSSSCCCCCCCTTCEEEEEEEECCSEEEEECTTSCEEEEEEEEEEE
T ss_pred CCEEEEeCCCCcEEEEEEEEEecCCccccCCCCCCEEEEEEEEeCCcEEEEEcCCCceEEEEHHHCc
Confidence 3588888777777778888887 378999999999999999999999965 59999999986
No 41
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=98.23 E-value=6.2e-06 Score=67.40 Aligned_cols=67 Identities=21% Similarity=0.198 Sum_probs=55.6
Q ss_pred ecCCCCEEEEEEEEEecccEEEEecCeeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEEEecCCce
Q psy13107 78 RPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGI 157 (170)
Q Consensus 78 ~p~~gev~~g~V~~i~~~Gifv~lg~~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~i 157 (170)
+...|++++|+|.++++.|+||.+|..+|++|.+++. +. ..|++||+|++.|.+++-+.++.
T Consensus 131 ~~~~GeIV~G~V~ri~~~~v~VDlGk~EgiLp~sE~i------p~------------E~~~vGD~Vkv~V~~V~~~~kg~ 192 (344)
T 1hh2_P 131 SELKGTVTTAEVIRVMGEWADIRIGKLETRLPKKEWI------PG------------EEIKAGDLVKVYIIDVVKTTKGP 192 (344)
T ss_dssp TCCTTCEEEEEEEEECSSEEEEEETTEEEEEEGGGSC------TT------------CCCCTTCEEEEEEEEEEEETTEE
T ss_pred hhcCCCEEEEEEEEEecCcEEEEeCCeEEEEeHHHcC------CC------------cCCCCCCEEEEEEEEEEcCCCCc
Confidence 3457999999999999999999999779999999874 11 17899999999999999877666
Q ss_pred EEEEE
Q psy13107 158 FAIGT 162 (170)
Q Consensus 158 ~~ig~ 162 (170)
.++=|
T Consensus 193 ~I~LS 197 (344)
T 1hh2_P 193 KILVS 197 (344)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55433
No 42
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=97.92 E-value=1.8e-05 Score=65.02 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=56.9
Q ss_pred EeecCCCCEEEEEEEE----EecccEEEEecC----eeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEE
Q psy13107 76 VFRPFKGEVLDAVVTQ----VNKVGMFAEIGP----LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKI 147 (170)
Q Consensus 76 ~f~p~~gev~~g~V~~----i~~~Gifv~lg~----~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV 147 (170)
-|+...||++.|+|.+ +.+.++||.+|. .+|++|.+++.. . ..|+.||.|++-|
T Consensus 125 ef~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~EqiP------~------------E~~~~GDrVkvyV 186 (366)
T 1k0r_A 125 EFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVP------G------------ESYEHGNRLRCYV 186 (366)
T ss_dssp --CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSCT------T------------CCCCTTCEEEEEE
T ss_pred HHHhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcCC------C------------ccCCCCCEEEEEE
Confidence 3668899999999999 999999999997 799999998641 1 1789999999999
Q ss_pred EEEEecCCceEEEEE
Q psy13107 148 VGTRVDASGIFAIGT 162 (170)
Q Consensus 148 ~~v~~~~~~i~~ig~ 162 (170)
.+|+-+.+.+.++=|
T Consensus 187 ~~V~~~~kgpqI~LS 201 (366)
T 1k0r_A 187 VGVTRGAREPLITLS 201 (366)
T ss_dssp EEEECCSSSCEEEEE
T ss_pred EEEecCCCccEEEEE
Confidence 999987776665433
No 43
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=97.90 E-value=1.4e-05 Score=68.44 Aligned_cols=79 Identities=16% Similarity=0.249 Sum_probs=56.6
Q ss_pred ecCCCCEEEEEEEEEecc--cEEEEecCe-eEEEEcCCCCCCceecCCCCCeEEEe-cCceeEEcCCCeEEEEEEEEEec
Q psy13107 78 RPFKGEVLDAVVTQVNKV--GMFAEIGPL-SCFISHHSIPTDMQFCPNSNPVCYKS-VHGEVVIQEDDEIRLKIVGTRVD 153 (170)
Q Consensus 78 ~p~~gev~~g~V~~i~~~--Gifv~lg~~-~~~i~~~~l~~~~~~d~~~~~~~~~~-~~~~~~~~~Gd~VrvrV~~v~~~ 153 (170)
++.+|.+|.|+|+++.++ |+||++|+. +||+|.+++..++ +..... ... .+-...++.||+|.|+|......
T Consensus 42 ~~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~-~~~~~~---~~~~~~i~d~lk~Gq~VlVQV~Ke~~g 117 (517)
T 2bx2_L 42 EQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREY-FPANYS---AHGRPNIKDVLREGQEVIVQIDKEERG 117 (517)
T ss_dssp CCCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGG-CC----------CCCGGGTCCTTCEEEEEEEECCCT
T ss_pred cCCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhh-hccccc---cccccchhhhccCCCEEEEEEEeeccc
Confidence 467999999999999999 999999987 9999999996443 111000 000 01113689999999999998766
Q ss_pred CCceEEE
Q psy13107 154 ASGIFAI 160 (170)
Q Consensus 154 ~~~i~~i 160 (170)
+....+.
T Consensus 118 ~KGa~lT 124 (517)
T 2bx2_L 118 NKGAALT 124 (517)
T ss_dssp TCCCEEE
T ss_pred cCCceEE
Confidence 5554443
No 44
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=97.87 E-value=2.3e-05 Score=62.55 Aligned_cols=56 Identities=16% Similarity=0.260 Sum_probs=42.9
Q ss_pred CCCCEEEEEEEEEe-cccEEEEecC--eeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEEEe
Q psy13107 80 FKGEVLDAVVTQVN-KVGMFAEIGP--LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRV 152 (170)
Q Consensus 80 ~~gev~~g~V~~i~-~~Gifv~lg~--~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~ 152 (170)
.+|++..|+|++++ ++|+|+.+|. .++|+|.|+++.. .. ..+++||.+.|.+ .+|.
T Consensus 68 ~~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~sel~~~----~~------------~~~~~Gd~v~v~l-~iD~ 126 (285)
T 3go5_A 68 TQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDILPEL----KE------------LWPKKGDQLYIRL-EVDK 126 (285)
T ss_dssp CSSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGGSCSS----GG------------GSCCTTCEEEEEE-EECT
T ss_pred cCCCEEEEEEEEEccCceEEEEECCCCcEEEEEHHHCCcc----cc------------cccCCCCEEEEEE-EECC
Confidence 47999999999999 7999999995 5999999999732 10 1347788876553 4543
No 45
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=97.75 E-value=5.7e-05 Score=58.97 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=55.8
Q ss_pred eecCCCCEEEEEEEE----EecccEEEEecC----eeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEE
Q psy13107 77 FRPFKGEVLDAVVTQ----VNKVGMFAEIGP----LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIV 148 (170)
Q Consensus 77 f~p~~gev~~g~V~~----i~~~Gifv~lg~----~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~ 148 (170)
|+...||++.|+|.+ +++..++|.+|. .+|++|.+++. +. ..|+.||+|++-|.
T Consensus 3 ~~~r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqi------p~------------E~~~~GDrIkayV~ 64 (251)
T 2asb_A 3 FSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PG------------ESYEHGNRLRCYVV 64 (251)
T ss_dssp -CCCTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSC------TT------------CCCCTTCEEEEEEE
T ss_pred hhhcCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcC------CC------------ccCCCCCEEEEEEE
Confidence 788999999999999 899999999997 69999998764 11 17899999999999
Q ss_pred EEEecCCceEEEEE
Q psy13107 149 GTRVDASGIFAIGT 162 (170)
Q Consensus 149 ~v~~~~~~i~~ig~ 162 (170)
+++-+.+...++=|
T Consensus 65 ~V~~~~~gpqIiLS 78 (251)
T 2asb_A 65 GVTRGAREPLITLS 78 (251)
T ss_dssp EEECCSSSCEEEEE
T ss_pred EEEcCCCCCEEEEE
Confidence 99877665554433
No 46
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.16 E-value=0.00061 Score=54.36 Aligned_cols=80 Identities=19% Similarity=0.121 Sum_probs=59.2
Q ss_pred eecCCCCEEEEEEEEEecccEEEEecC-eeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEEEecCC
Q psy13107 77 FRPFKGEVLDAVVTQVNKVGMFAEIGP-LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDAS 155 (170)
Q Consensus 77 f~p~~gev~~g~V~~i~~~Gifv~lg~-~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~ 155 (170)
|.|.+|+++.|+|++++...+.|+++. .++.+|.++++... ++....|++||.|+.||.++.-+ .
T Consensus 123 YiP~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~f~Gat-------------k~~r~~f~~GDlV~ArV~s~~~~-~ 188 (289)
T 2nn6_G 123 YVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGAT-------------KRNRPNVQVGDLIYGQFVVANKD-M 188 (289)
T ss_dssp CCCCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSSCCS-------------SCSSSSSCTTCEEEEEEEECCTT-S
T ss_pred CCCCCCCEEEEEEEEEeCcEEEEEECCCceeEEehhhcCcch-------------hhhhhhcCCCCEEEEEEEEcCCC-C
Confidence 679999999999999999999999976 49999999876221 11123899999999999987522 2
Q ss_pred ceEE--EE-EecCCCCCC
Q psy13107 156 GIFA--IG-TLMDDYLGL 170 (170)
Q Consensus 156 ~i~~--ig-~~~~~~LG~ 170 (170)
.+.. +. +..+.+||+
T Consensus 189 ~~eLsc~~~~~k~~~lG~ 206 (289)
T 2nn6_G 189 EPEMVCIDSCGRANGMGV 206 (289)
T ss_dssp CCEEECSBTTTTBCCCCS
T ss_pred ceEEEecccccccccCCE
Confidence 2333 21 124677774
No 47
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=95.33 E-value=0.014 Score=49.43 Aligned_cols=65 Identities=11% Similarity=0.070 Sum_probs=48.9
Q ss_pred EEEEEeecCCCCEEEEEEEEEecccEEEEecCeeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEEE
Q psy13107 72 YRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR 151 (170)
Q Consensus 72 f~~i~f~p~~gev~~g~V~~i~~~Gifv~lg~~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~ 151 (170)
+++.+++...|++++|.|+.+. ..+|+|+.+.++.+ + .. +..|++||.|+|||.++|
T Consensus 394 ~~~~~l~~~~g~~f~g~vv~l~---------~~~glV~v~~l~~d--~---------~~---~~~~~lGd~V~V~v~~vd 450 (469)
T 2r7d_A 394 HTLRFIAAQPERVWDAVVVDRR---------GAQATLLIPDLAFD--V---------QV---NTPAAPGTALQVQFADID 450 (469)
T ss_dssp HHHHHHHTCTTCCEEEEEEEEE---------TTEEEEEEGGGTEE--E---------EE---ECCCCTTCEEEEEEEEEE
T ss_pred HHHHHHHhCCCCEEEEEEEEEe---------CcEEEEEECCCCeE--E---------ec---CCcCCCCCEEEEEEEEEc
Confidence 3444567899999999986543 33789999998744 1 11 237999999999999999
Q ss_pred ecCCceEE
Q psy13107 152 VDASGIFA 159 (170)
Q Consensus 152 ~~~~~i~~ 159 (170)
..++++..
T Consensus 451 ~~~~~i~f 458 (469)
T 2r7d_A 451 LPQMRVRA 458 (469)
T ss_dssp TTTTEEEE
T ss_pred cCCCEEEE
Confidence 98888754
No 48
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=95.18 E-value=0.054 Score=36.18 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=38.6
Q ss_pred CCCEEEEEEEEE---ecccEEEEecC--eeEEEEcCCCCCC-ceecCCCCCeEEEecCceeEEcCCCeEEEEEEEEE
Q psy13107 81 KGEVLDAVVTQV---NKVGMFAEIGP--LSCFISHHSIPTD-MQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR 151 (170)
Q Consensus 81 ~gev~~g~V~~i---~~~Gifv~lg~--~~~~i~~~~l~~~-~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~ 151 (170)
.++...|+|+.. ..+| |+.-+. -++|+|.+.|..+ + + ...++.|+.|+++|..+.
T Consensus 13 ~~~~~~G~Vk~fn~~kGfG-FI~~~~gg~dvfvH~s~l~~~~~-~--------------~~~l~~Ge~V~g~V~~i~ 73 (101)
T 2bh8_A 13 QSGKMTGIVKWFNADKGFG-FITPDDGSKDVFVHFSAGSSGAA-V--------------RGNPQQGDRVEGKIKSIT 73 (101)
T ss_dssp ---CEEEEEEEEEGGGTEE-EEEESSSSCEEEEECCCSCSSSC-C--------------CCCCCTTCEEEEEEEECC
T ss_pred ccccceeEEEEEECCCCCE-EEEeCCCCcEEEEEEEEEecCCc-c--------------ccCCCCCCEEEEEEEEeC
Confidence 457789999988 4578 776543 4999999999744 2 0 025688999999988764
No 49
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=91.64 E-value=0.72 Score=29.99 Aligned_cols=52 Identities=8% Similarity=0.139 Sum_probs=35.7
Q ss_pred CCEEEEEEEEEec-ccEEEEecC-eeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEE
Q psy13107 82 GEVLDAVVTQVNK-VGMFAEIGP-LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGT 150 (170)
Q Consensus 82 gev~~g~V~~i~~-~Gifv~lg~-~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v 150 (170)
.+...|+|+..++ +|+...-+. -|.|+|.+.|..+ + ..++.||+|+|.+..-
T Consensus 16 ~~~~~G~Vkwf~KGfGFI~~ddgg~DVFvH~s~i~~~--~---------------~~L~~G~~V~F~v~~~ 69 (89)
T 1wfq_A 16 ALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGN--L---------------QDLKVGDDVEFEVSSD 69 (89)
T ss_dssp CCEEEEEEEEECSSEEEEEETTTTEEEEEETTTCSSC--T---------------TTCCTTCCEEEEEEEC
T ss_pred ccccceEEEEEeCCeeEEecCCCCccEEEEhHHhhCc--c---------------CCCCCCCEEEEEEEEC
Confidence 4677899999874 343333333 4999999999743 1 1567888999888653
No 50
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=90.84 E-value=0.63 Score=29.50 Aligned_cols=58 Identities=10% Similarity=0.143 Sum_probs=38.6
Q ss_pred CCCCEEEEEEEEEec---ccEEEEecC-eeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEE
Q psy13107 80 FKGEVLDAVVTQVNK---VGMFAEIGP-LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149 (170)
Q Consensus 80 ~~gev~~g~V~~i~~---~Gifv~lg~-~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~ 149 (170)
...+...|+|+.-++ +|+...-+. -|.|+|.|.|..+-. +..-..++.|+.|+|.+..
T Consensus 4 ~~~~~~~G~Vkwfn~~kGfGFI~~~~gg~DvFvH~s~i~~~~~------------~~g~~~l~~G~~V~f~~~~ 65 (79)
T 1h95_A 4 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP------------RKYLRSVGDGETVEFDVVE 65 (79)
T ss_dssp CCEEEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCCC------------SCCSCSCCSSCEEEEEEEE
T ss_pred ccccccceEEEEEECCCCcEEEecCCCCccEEEEhHHcccccc------------ccccccCCCCCEEEEEEEE
Confidence 345567899999886 455444333 499999999973300 0001267899999999975
No 51
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=90.53 E-value=0.34 Score=31.46 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=35.7
Q ss_pred CCCEEEEEEEEEecccEEEEecC--eeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEE
Q psy13107 81 KGEVLDAVVTQVNKVGMFAEIGP--LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149 (170)
Q Consensus 81 ~gev~~g~V~~i~~~Gifv~lg~--~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~ 149 (170)
.++...|+|+.-++--=|++-.. -|.|+|.+.|..+ + ..++.|+.|+|.+..
T Consensus 15 ~~~~~~G~Vk~f~kGfGFI~~ddgg~DvFvH~S~i~~~--~---------------~~L~~G~~V~F~~~~ 68 (88)
T 2yty_A 15 NSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGD--V---------------DSLELGDMVEYSLSK 68 (88)
T ss_dssp SCCCEEEEEEEECSSEEEEECSSSSCEEEEETTTCCSC--T---------------TTCCTTCEEEECCCC
T ss_pred CCCceeEEEEEEECCccEEecCCCCceEEEEEhhhccc--c---------------CcCCCCCEEEEEEEE
Confidence 56889999999986222344432 3999999999744 1 145778888887753
No 52
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=90.01 E-value=1.1 Score=27.70 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=34.7
Q ss_pred EEEEEEEEEec---ccEEEEecC-eeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEE
Q psy13107 84 VLDAVVTQVNK---VGMFAEIGP-LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGT 150 (170)
Q Consensus 84 v~~g~V~~i~~---~Gifv~lg~-~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v 150 (170)
...|+|+.-++ +|+...-+. -|.|+|.+.|..+ . -..++.|+.|.|.+..-
T Consensus 5 ~~~G~Vk~fn~~kGfGFI~~~~g~~dvFvH~s~i~~~------g----------~~~l~~G~~V~f~~~~~ 59 (71)
T 3i2z_B 5 KIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTN------G----------FKTLAEGQRVEFEITNG 59 (71)
T ss_dssp CEEEEEEEEETTTTEEEEEETTCCCCEEEEGGGBCCS------S----------CCCCCTTCEEEEEEEEE
T ss_pred cccEEEEEEECCCCcEEEecCCCCccEEEEhHHcccc------c----------CcCCCCCCEEEEEEEEC
Confidence 35788888876 454333333 3899999998633 0 01568899999998763
No 53
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=87.26 E-value=1.4 Score=26.96 Aligned_cols=49 Identities=12% Similarity=0.210 Sum_probs=33.1
Q ss_pred EEEEEEEec---ccEEEEecC-eeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEE
Q psy13107 86 DAVVTQVNK---VGMFAEIGP-LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGT 150 (170)
Q Consensus 86 ~g~V~~i~~---~Gifv~lg~-~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v 150 (170)
.|+|+.-++ +|+...-+. -|.|+|.|.|..+ . -..++.|+.|+|.+..-
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~------g----------~~~l~~G~~V~f~~~~~ 55 (67)
T 3cam_A 3 TGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINME------G----------FKTLKEGQRVSFDVTTG 55 (67)
T ss_dssp EEEEEEEETTTTEEEEEETTSCCCEEEEGGGBCGG------G----------GSSCCTTCEEEEEEEEE
T ss_pred CEEEEEEECCCCeEEEecCCCCccEEEEHHHcccc------C----------CCCCCCCCEEEEEEEEC
Confidence 688888876 354443333 3899999998632 0 02568899999998653
No 54
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=85.14 E-value=2.8 Score=29.82 Aligned_cols=51 Identities=20% Similarity=0.297 Sum_probs=35.4
Q ss_pred CCCEEEEEEEEEec---ccEEEEecCe-eEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEE
Q psy13107 81 KGEVLDAVVTQVNK---VGMFAEIGPL-SCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149 (170)
Q Consensus 81 ~gev~~g~V~~i~~---~Gifv~lg~~-~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~ 149 (170)
.|+...|+|+.-+. ||+...-+.. |+|+|.+.|..+ ..++.|+.|+|.+..
T Consensus 59 ~g~m~~GtVKwFn~~KGfGFI~~ddGg~DVFVH~Sai~~~------------------~~L~eGq~V~Fev~~ 113 (147)
T 3aqq_A 59 QGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE------------------YVPVEGDEVTYKMCS 113 (147)
T ss_dssp HSCCEEEEEEEEETTTTEEEEEESSSCSCEEEEGGGEESS------------------BCCCTTCEEEEEEEE
T ss_pred cCCccceEEEEEeCCCCeEEeccCCCCccEEEEeeeecCC------------------CcCCCCCEEEEEEEe
Confidence 46678999999876 4554444443 899999988522 156778888888764
No 55
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=84.82 E-value=3.5 Score=24.86 Aligned_cols=48 Identities=21% Similarity=0.341 Sum_probs=32.8
Q ss_pred EEEEEEEecc---cEEEEecC-eeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEE
Q psy13107 86 DAVVTQVNKV---GMFAEIGP-LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGT 150 (170)
Q Consensus 86 ~g~V~~i~~~---Gifv~lg~-~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v 150 (170)
.|+|+.-++. |+. +-.. -|.|+|.|.|..+ . -..++.|+.|++.+..-
T Consensus 3 ~G~Vk~fn~~kGfGFI-~~~~g~dvFvH~s~i~~~------g----------~~~l~~G~~V~f~~~~~ 54 (66)
T 1c9o_A 3 RGKVKWFNNEKGYGFI-EVEGGSDVFVHFTAIQGE------G----------FKTLEEGQEVSFEIVQG 54 (66)
T ss_dssp EEEEEEEETTTTEEEE-EETTEEEEEEEGGGBCSS------S----------CCCCCTTCEEEEEEEEE
T ss_pred ceEEEEEECCCCeEEE-ecCCCccEEEEHHHcccc------C----------CCCCCCCCEEEEEEEEC
Confidence 6888888753 433 3333 4899999999733 1 02578899999998653
No 56
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=83.29 E-value=1.4 Score=26.78 Aligned_cols=48 Identities=13% Similarity=0.192 Sum_probs=30.6
Q ss_pred EEEEEEEec---ccEEEEecCeeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEE
Q psy13107 86 DAVVTQVNK---VGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149 (170)
Q Consensus 86 ~g~V~~i~~---~Gifv~lg~~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~ 149 (170)
.|+|+.-++ +|+...-+.-+.|+|.+.|..+ . -..++.|+.|++.+..
T Consensus 2 ~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~------g----------~~~l~~G~~V~f~~~~ 52 (66)
T 1g6p_A 2 RGKVKWFDSKKGYGFITKDEGGDVFVHWSAIEME------G----------FKTLKEGQVVEFEIQE 52 (66)
T ss_dssp CEEEEEEETTTTEEEEEETTSCBCBBCSSSSCCS------S----------CCCCCSSSEEEEEEEC
T ss_pred cEEEEEEECCCCEEEEecCCCceEEEEhHHcccc------C----------CCCCCCCCEEEEEEEE
Confidence 477887775 3443322224889999888633 0 0256889999988854
No 57
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=83.15 E-value=1.4 Score=28.97 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=33.7
Q ss_pred CCEEEEEEEEEec-ccEEEEecC-eeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEE
Q psy13107 82 GEVLDAVVTQVNK-VGMFAEIGP-LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIV 148 (170)
Q Consensus 82 gev~~g~V~~i~~-~Gifv~lg~-~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~ 148 (170)
.+...|+|+...+ ||+...-+. -|.|+|.+.|..+ + ..++.|+.|+|.+.
T Consensus 16 ~~~~~G~Vkwf~KGfGFI~~ddg~~DvFvH~s~i~~~--~---------------~~L~~G~~V~F~v~ 67 (97)
T 2ytx_A 16 QARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGD--L---------------ETLQPGDDVEFTIK 67 (97)
T ss_dssp CCCEEEEECCCCSSEEEEECSSSCCCEEEETTTCCSC--T---------------TSCCSCCEEEEEEC
T ss_pred CcceeEEEEEEeCCceEEecCCCCceEEEEehHhccc--c---------------CCCCCCCEEEEEEE
Confidence 5678999988833 333322222 3899999999744 1 15678888888884
No 58
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=80.12 E-value=3.7 Score=25.36 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=30.7
Q ss_pred EEEEEEEecc---cEEEEecCeeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEE
Q psy13107 86 DAVVTQVNKV---GMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149 (170)
Q Consensus 86 ~g~V~~i~~~---Gifv~lg~~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~ 149 (170)
.|+|+.-++. |+...-+.-|.|+|.|.|..+ . -..++.|+.|+|.+..
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~------g----------~~~l~~G~~V~f~~~~ 53 (73)
T 3a0j_A 3 KGRVKWFNAEKGYGFIEREGDTDVFVHYTAINAK------G----------FRTLNEGDIVTFDVEP 53 (73)
T ss_dssp EEEEEEEETTTTEEEEECTTSCCEEEEGGGBCSS------S----------CSSCCTTCEEEEEEEC
T ss_pred CEEEEEEECCCCEEEEecCCCCcEEEEhhhcccc------C----------CCCCCCCCEEEEEEEE
Confidence 6888888763 433221224899999998733 0 0156788888888754
No 59
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=78.66 E-value=6 Score=27.94 Aligned_cols=50 Identities=10% Similarity=0.268 Sum_probs=33.7
Q ss_pred EEEEEEEEec---ccEEEEe--------cCeeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEE
Q psy13107 85 LDAVVTQVNK---VGMFAEI--------GPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGT 150 (170)
Q Consensus 85 ~~g~V~~i~~---~Gifv~l--------g~~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v 150 (170)
..|+|+.-+. ||+...- +.-|+|||.+.|..+ . -..++.|+.|.|.+..-
T Consensus 10 ~~G~Vkwfn~~kGfGFI~~~~~~g~p~~~g~DvFvH~s~i~~~------g----------~~~l~eG~~V~f~~~~g 70 (148)
T 3ts2_A 10 GAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHME------G----------FRSLKEGEAVEFTFKKS 70 (148)
T ss_dssp EEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCSS------S----------SCCCCTTCEEEEEEEEE
T ss_pred ceeEEEEEECCCCeeEEeeCccccccCCCCccEEEEhHHhccc------C----------CccCCCCCEEEEEEEEc
Confidence 5688888775 4554433 123999999999633 0 02678899999998764
No 60
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=78.57 E-value=4.9 Score=26.47 Aligned_cols=61 Identities=23% Similarity=0.195 Sum_probs=42.8
Q ss_pred cCCCCEEEEEEEEEecccEEEEecC-eeEEEEcCCCCCCceecCCCCCeEEEecC-ceeEEcCCCeEEEE
Q psy13107 79 PFKGEVLDAVVTQVNKVGMFAEIGP-LSCFISHHSIPTDMQFCPNSNPVCYKSVH-GEVVIQEDDEIRLK 146 (170)
Q Consensus 79 p~~gev~~g~V~~i~~~Gifv~lg~-~~~~i~~~~l~~~~~~d~~~~~~~~~~~~-~~~~~~~Gd~Vrvr 146 (170)
|..|+.+-|.|+++++.++.+.+.. -.+.|+.+.|.---.|... .+. -...++.||.|+|+
T Consensus 31 ~~~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~~~~~WA~~~~~~-------~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 31 GNSDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAAHRFLSN-------DPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp CTTTTCEEEEEEEEETTEEEEEETTSCEEEECGGGGSTTGGGTTT-------CTTTGGGSCCTTEEEEEE
T ss_pred CccCCeEEEEEEEeCCCeEEEEEcCCCeEEEcHHHChhhhhcccc-------cccchhccCCCCCEEEEE
Confidence 5568899999999999999999965 4777888776522111100 011 12479999999998
No 61
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=78.24 E-value=7.1 Score=25.24 Aligned_cols=50 Identities=8% Similarity=0.165 Sum_probs=32.8
Q ss_pred EEEEEEEEec---ccEEEEe-------cC-eeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEE
Q psy13107 85 LDAVVTQVNK---VGMFAEI-------GP-LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGT 150 (170)
Q Consensus 85 ~~g~V~~i~~---~Gifv~l-------g~-~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v 150 (170)
..|+|+.-++ +|+...- .. -|.|+|.|.|..+ . -+.+..|+.|.|.+..-
T Consensus 9 ~tG~VKWFn~~KGfGFI~~~~~~~~p~dgg~DvFVH~s~i~~~------g----------~~~L~eG~~V~f~v~~g 69 (90)
T 3ulj_A 9 GSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYME------G----------FRSLKEGEPVEFTFKKS 69 (90)
T ss_dssp EEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCCS------S----------SCCCCTTCEEEEEEEEE
T ss_pred cceEEEEeeCCCCeEEeEecCcCcCCCCCCccEEEEeehhccc------C----------CCccCCCCEEEEEEEEC
Confidence 4678887765 3444321 11 3899999999633 1 02578899999988753
No 62
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=77.31 E-value=6.5 Score=24.38 Aligned_cols=47 Identities=11% Similarity=0.243 Sum_probs=31.6
Q ss_pred EEEEEEEEec---ccEEEEecCeeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEE
Q psy13107 85 LDAVVTQVNK---VGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149 (170)
Q Consensus 85 ~~g~V~~i~~---~Gifv~lg~~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~ 149 (170)
..|+|+.-++ +|+...-+.-+-|+|.|.|..+ + .++.|+.|+|.+..
T Consensus 3 ~~G~Vkwfn~~KGfGFI~~~dg~~dFvH~s~i~~~-----------------g-~l~~G~~V~F~~~~ 52 (74)
T 2k5n_A 3 MNGTITTWFKDKGFGFIKDENGDNRYFHVIKVANP-----------------D-LIKKDAAVTFEPTT 52 (74)
T ss_dssp EEEEEEEEETTTTEEEEEESSSCEEEEEGGGBSSG-----------------G-GCCTTCEEEEEEEE
T ss_pred cceEEEEEECCCCeEEEecCCCCceEEEHhHcccC-----------------C-CCCCCCEEEEEEEe
Confidence 5788888876 3544333333239999998622 1 56889999999865
No 63
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=78.89 E-value=0.48 Score=29.31 Aligned_cols=51 Identities=10% Similarity=0.188 Sum_probs=33.4
Q ss_pred EEEEEEEEEec---ccEEEEecC-eeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEEE
Q psy13107 84 VLDAVVTQVNK---VGMFAEIGP-LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGT 150 (170)
Q Consensus 84 v~~g~V~~i~~---~Gifv~lg~-~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v 150 (170)
.+.|+|+.-++ +|+...-+. -|.|+|.+.|..+ . -..++.|+.|+|.+..-
T Consensus 4 ~~~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~------g----------~~~l~~G~~V~f~~~~~ 58 (70)
T 2lss_A 4 NIVGKVKWYNSTKNFGFIEQDNGGKDVFVHKSAVDAA------G----------LHSLEEGQDVIFDLEEK 58 (70)
Confidence 46688887765 455443333 3899999998632 0 02568888888887553
No 64
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=73.66 E-value=2.2 Score=26.99 Aligned_cols=48 Identities=21% Similarity=0.320 Sum_probs=31.2
Q ss_pred EEEEEEEEEec-ccEEEEecC--eeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEE
Q psy13107 84 VLDAVVTQVNK-VGMFAEIGP--LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149 (170)
Q Consensus 84 v~~g~V~~i~~-~Gifv~lg~--~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~ 149 (170)
...|+|....+ ||+...-+. -|.|+|.+.|. + . ..++.||.|+|.+..
T Consensus 8 ~~~G~V~~~~KGfGFI~~ddg~g~DvFvH~s~i~-~----------------g-~~l~~G~~V~F~v~~ 58 (79)
T 2ytv_A 8 LRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQ-D----------------G-IELQAGDEVEFSVIL 58 (79)
T ss_dssp BCCEEEEECCSSEEEESCCCSSSSSEEEETTTCC-S----------------S-CCCCTTCEEECBCEE
T ss_pred cccEEEEEecccceeEeCCCCCCCcEEEEhHHcC-C----------------C-CcCCCCCEEEEEEEE
Confidence 34678887754 344332222 38999999886 2 0 256888999988865
No 65
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=73.62 E-value=3.4 Score=25.71 Aligned_cols=48 Identities=8% Similarity=0.017 Sum_probs=31.1
Q ss_pred EEEEEEEecc---cEEEEecCeeEEEEcCCCC-CCceecCCCCCeEEEecCceeEEcCCCeEEEEEEE
Q psy13107 86 DAVVTQVNKV---GMFAEIGPLSCFISHHSIP-TDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149 (170)
Q Consensus 86 ~g~V~~i~~~---Gifv~lg~~~~~i~~~~l~-~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~ 149 (170)
.|+|+.-++. |+...-+.-|.|+|.|.|. .+- | ..++.|+.|+|.+..
T Consensus 2 ~G~Vkwfn~~KGfGFI~~~dG~DvFvH~s~i~~~~g-~---------------~~l~~G~~V~F~~~~ 53 (74)
T 2kcm_A 2 KGKVVSYLAAKKYGFIQGDDGESYFLHFSELLDKKD-E---------------GKLVKGSMVHFDPTP 53 (74)
T ss_dssp EEEEEEEETTTTEEEEEETTSCEECCCGGGSSCSGG-G---------------TTCCTTSEEEEEEEC
T ss_pred CEEEEEEECCCCEEEEecCCCceEEEEhhhcccCCC-C---------------CCCCCCCEEEEEEEE
Confidence 5788887763 4433222248999999986 320 0 156889999998863
No 66
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=68.35 E-value=2 Score=27.86 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=32.1
Q ss_pred CEEEEEEEEEec-ccEEEEecC-eeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEE
Q psy13107 83 EVLDAVVTQVNK-VGMFAEIGP-LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149 (170)
Q Consensus 83 ev~~g~V~~i~~-~Gifv~lg~-~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~ 149 (170)
....|+|+..++ ||+.-.-+. -|.|+|.+.|+.. ..++.||+|+|.+..
T Consensus 7 ~r~~G~Vk~f~KGfGFI~~~~gg~DvFvH~s~i~~~------------------~~L~~G~~V~F~v~~ 57 (89)
T 1x65_A 7 GREMGVIAAMRDGFGFIKCVDRDVRMFFHFSEILDG------------------NQLHIADEVEFTVVP 57 (89)
T ss_dssp CCEEEEEEECCTTBCEEEESSSSSCCCCBTTGGGGS------------------CCCCTTCCEEECCBC
T ss_pred cceeEEEEEEeCCcceeecCCCCccEEEEhhhccCC------------------CCCCCCCEEEEEEEe
Confidence 356789988865 444433333 3899999888621 256778888887754
No 67
>2jk8_A BEPA, putative cell filamentation protein (BEPA protein; T4SS, OB fold, FIC domain, substrate protein, protein transl cell adhesion; 2.80A {Bartonella henselae} PDB: 2vy3_A 2vza_A*
Probab=49.76 E-value=23 Score=27.83 Aligned_cols=57 Identities=12% Similarity=0.163 Sum_probs=44.6
Q ss_pred EEeecCCCCEEEEEEEEEecccEEEEecCeeEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEE
Q psy13107 75 IVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKI 147 (170)
Q Consensus 75 i~f~p~~gev~~g~V~~i~~~Gifv~lg~~~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV 147 (170)
.+.-|..|..+.|...+.++.++-+.....-+..+...|+.+ . -+.++.||++.|++
T Consensus 244 ~i~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~pe------~----------~~~l~~~~~~~~~~ 300 (302)
T 2jk8_A 244 PVMVAKEGETYTGTYRGAGLEGFALNVKGAYIIGNIDHLPPE------Q----------LKILKPGDKITFTA 300 (302)
T ss_dssp CEEECCTTCEEEEEEEEECSSEEEEEBTTBEEEEEGGGSCHH------H----------HHTCCTTCEEEEEC
T ss_pred EEEeccCCCccceEEEecCCCeEEEEeCCcEEEEECCccCHH------H----------HhccCCCCEEEEEe
Confidence 455789999999999999999999988766677777777522 1 12678999998875
No 68
>3ie4_A GRAM-negative binding protein 3; immunoglobulin fold, immune system; 1.45A {Drosophila melanogaster}
Probab=44.59 E-value=39 Score=22.40 Aligned_cols=62 Identities=6% Similarity=-0.009 Sum_probs=35.6
Q ss_pred EEEEEEecccEEEEecC---e-----eEEEEcCC--CCC-Ccee---cCCCCCeEEEecCceeEEcCCCeEEEEEEEE
Q psy13107 87 AVVTQVNKVGMFAEIGP---L-----SCFISHHS--IPT-DMQF---CPNSNPVCYKSVHGEVVIQEDDEIRLKIVGT 150 (170)
Q Consensus 87 g~V~~i~~~Gifv~lg~---~-----~~~i~~~~--l~~-~~~~---d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v 150 (170)
++|.-..+.|+.|++.. + ++.|.... +.. ++-- ..... +|..++.+..++.||+|..++.-.
T Consensus 6 ~~ve~l~P~G~rvsipD~pgi~lf~fh~~iN~~~~~~~~g~~~~dit~~~~G--rW~~~d~~~~lk~GD~I~Ywv~V~ 81 (107)
T 3ie4_A 6 AKIDVFYPKGFEVSIPDEEGITLFAFHGKLNEEMEGLEAGTWARDIVKAKNG--RWTFRDRITALKPGDTLYYWTYVI 81 (107)
T ss_dssp CEEEECSSSCEEEEEECCTTEEEEEEEEEESSCCCSSCCCSEEEEECCCBTT--EEEEEESSCCCCTTCEEEEEEEEE
T ss_pred cEEEEeCCCCEEEEEcCCCCCEEEEEEEEeCCCCcCccccEeEEeEeEecCC--EEEEECCCceeCCCCEEEEEEEEE
Confidence 45666677888888842 2 34443222 111 1111 12333 455555567999999999998766
No 69
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=39.50 E-value=18 Score=22.61 Aligned_cols=55 Identities=16% Similarity=0.257 Sum_probs=32.0
Q ss_pred EEEEEEEEeccc--EEEEecCeeEEEEcCCCCCC-ceecCCCCCeEEEecCceeEEcCCCeEEEEEEEE
Q psy13107 85 LDAVVTQVNKVG--MFAEIGPLSCFISHHSIPTD-MQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGT 150 (170)
Q Consensus 85 ~~g~V~~i~~~G--ifv~lg~~~~~i~~~~l~~~-~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v 150 (170)
.+|+|+++++.. +-+.-+++. .-..|.- ..|.-... ..-..++.||.|+|.+...
T Consensus 10 ~~G~V~~id~~~~~iTi~H~pI~----~l~wpaMTM~F~v~~~-------~~l~~lk~Gd~V~F~~~~~ 67 (80)
T 2qcp_X 10 ATGVVKGIDLESKKITIHHDPIA----AVNWPEMTMRFTITPQ-------TKMSEIKTGDKVAFNFVQQ 67 (80)
T ss_dssp EEEEEEEEETTTTEEEEEECCBG----GGTBCSEEEEEECCTT-------CEECCCCTTCEEEEEEEEE
T ss_pred EEEEEEEEcCCCCEEEEEcCCcc----cCCCCceEEEEEccCh-------hhhhcCCCCCEEEEEEEEe
Confidence 689999999876 555545431 1122211 22321111 0113689999999999764
No 70
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=37.83 E-value=20 Score=22.90 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=31.9
Q ss_pred EEEEEEEEeccc--EEEEecCeeEEEEcCCCCCC-ceecCCCCCeEEEecCceeEEcCCCeEEEEEEEE
Q psy13107 85 LDAVVTQVNKVG--MFAEIGPLSCFISHHSIPTD-MQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGT 150 (170)
Q Consensus 85 ~~g~V~~i~~~G--ifv~lg~~~~~i~~~~l~~~-~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v 150 (170)
.+|+|+++++.. +-+.-+++. .-..|.= ..|.-.... .-..++.||.|+|.+...
T Consensus 18 ~~G~V~~id~~~~~iTi~H~pI~----~l~wpaMTM~F~v~~~~-------~l~~lk~Gd~V~F~~~~~ 75 (88)
T 2vb2_X 18 ATGVVKGIDLESKKITIHHDPIA----AVNWPEMTMRFTITPQT-------KMSEIKTGDKVAFNFVQQ 75 (88)
T ss_dssp EEEEEEEEETTTTEEEEEECCBG----GGTBCSEEEEEECCTTC-------EECCCCTTCEEEEEEEEE
T ss_pred EEEEEEEEcCCCCEEEEecCCcc----cCCCCceEEEEEcCChh-------hhhcCCCCCEEEEEEEEe
Confidence 789999999876 545545431 1122211 223211110 113689999999999765
No 71
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=36.60 E-value=77 Score=19.73 Aligned_cols=55 Identities=5% Similarity=0.053 Sum_probs=32.8
Q ss_pred EEEEEEEEecccEEEEecCeeEEEEcCCCCCC-ceecCCCCCeEEEecCceeEEcCCCeEEEEEEEE
Q psy13107 85 LDAVVTQVNKVGMFAEIGPLSCFISHHSIPTD-MQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGT 150 (170)
Q Consensus 85 ~~g~V~~i~~~Gifv~lg~~~~~i~~~~l~~~-~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v 150 (170)
.+|+|++++...+-++-+++ +.-.+|.= ..|.-... ..-..++.||+|+|.+...
T Consensus 6 ~~G~V~~vd~~~iTi~H~pI----~~l~wPaMTM~F~v~~~-------~~l~~lk~Gd~V~F~~~~~ 61 (82)
T 2l55_A 6 AVGRIQSIGERSLIIAHEAI----PSAQWGAMTMEFAAPPA-------GLPQGLKAGDRVAFSFRLD 61 (82)
T ss_dssp EEEEEEECCSSEEEEEECCC----TTTTCCCEEEEEECCTT-------CCCSSCSTTCEEEEEEEEE
T ss_pred EeEEEEEEccccEEEecCCc----cccCCCceEEEEEcCCh-------hHhhcCCCCCEEEEEEEEC
Confidence 48999999998855555543 11222211 33321111 0113689999999999765
No 72
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=35.45 E-value=48 Score=20.97 Aligned_cols=17 Identities=6% Similarity=0.372 Sum_probs=14.8
Q ss_pred EEcCCCeEEEEEEEEEe
Q psy13107 136 VIQEDDEIRLKIVGTRV 152 (170)
Q Consensus 136 ~~~~Gd~VrvrV~~v~~ 152 (170)
.|++||+|.+|+...+.
T Consensus 12 iYrPGetV~~~~~~~~~ 28 (102)
T 2p9r_A 12 IYKPGQTVKFRVVSMDE 28 (102)
T ss_dssp EECTTCEEEEEEEEECG
T ss_pred ccCCCCEEEEEEEEECC
Confidence 89999999999987764
No 73
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=30.32 E-value=76 Score=20.27 Aligned_cols=19 Identities=11% Similarity=0.392 Sum_probs=14.2
Q ss_pred ceeEEcCCCeEEEEEEEEE
Q psy13107 133 GEVVIQEDDEIRLKIVGTR 151 (170)
Q Consensus 133 ~~~~~~~Gd~VrvrV~~v~ 151 (170)
....++.|++|++++.+.+
T Consensus 38 ~~i~v~~G~~V~~~~~n~d 56 (112)
T 1iby_A 38 ETLVVKKGDAVKVVVENKS 56 (112)
T ss_dssp CEEEEETTCEEEEEEEECS
T ss_pred CEEEEeCCCEEEEEEEECC
Confidence 3467888888888887754
No 74
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=29.30 E-value=1.4e+02 Score=20.40 Aligned_cols=58 Identities=16% Similarity=0.117 Sum_probs=36.0
Q ss_pred CCCCEEEEEEEEEecccEEEEecCe---eEEEEcCCCCCCceecCCCCCeEEEecCceeEEcCCCeEEEEEEE
Q psy13107 80 FKGEVLDAVVTQVNKVGMFAEIGPL---SCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVG 149 (170)
Q Consensus 80 ~~gev~~g~V~~i~~~Gifv~lg~~---~~~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~ 149 (170)
..|.=+.|+|+.+.+..++|..... +--+|.+++--. +. ......+..||+|.|--.+
T Consensus 13 ~~G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlp----P~--------~~~~~~f~~gd~VEV~~~~ 73 (128)
T 3h8z_A 13 SNGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLP----PP--------ADYNKEITEGDEVEVYSRA 73 (128)
T ss_dssp TTSCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEECC----CC--------C----CCCTTCEEEEEECC
T ss_pred CCCCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEcC----CC--------cccccCCCCCCEEEEEecC
Confidence 4588899999999999999998542 345555554110 00 0112357788888776543
No 75
>2l74_A Putative uncharacterized protein PA4608; PILZ, C-DI-GMP, unknown function, C-DI-GMP binding P; HET: C2E; NMR {Pseudomonas aeruginosa}
Probab=28.91 E-value=61 Score=22.29 Aligned_cols=33 Identities=6% Similarity=0.124 Sum_probs=24.9
Q ss_pred EeEEEEEEEeecCCCCEEEEEEEEEecccEEEEec
Q psy13107 68 YPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIG 102 (170)
Q Consensus 68 ~~v~f~~i~f~p~~gev~~g~V~~i~~~Gifv~lg 102 (170)
+.+...+.+..+ |..+.|++..++..|+++.+.
T Consensus 34 v~~~~~~~l~~~--g~~~~~~~~DiSl~G~~I~~~ 66 (145)
T 2l74_A 34 IAFDADSEILQG--ERRWEVLLHDVSLHGILVGQP 66 (145)
T ss_dssp CCCCEEEEEEET--TEEEEEEEEEEETTEEEEECC
T ss_pred EEEeeEEEEEEC--CEEEEEEEEEeccCCCEEEcC
Confidence 333444444444 899999999999999999873
No 76
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=27.01 E-value=49 Score=24.62 Aligned_cols=20 Identities=15% Similarity=0.391 Sum_probs=17.2
Q ss_pred ceeEEcCCCeEEEEEEEEEe
Q psy13107 133 GEVVIQEDDEIRLKIVGTRV 152 (170)
Q Consensus 133 ~~~~~~~Gd~VrvrV~~v~~ 152 (170)
+...+..|+.|||+|.+.|.
T Consensus 41 n~l~lP~g~~V~~~lTS~DV 60 (205)
T 1cyx_A 41 NEIAFPANTPVYFKVTSNSV 60 (205)
T ss_dssp SEEEEETTSCEEEEEEESSS
T ss_pred ceEEEeCCCEEEEEEecCCc
Confidence 46789999999999998764
No 77
>2jpp_A Translational repressor; RNA recognition, protein/RNA, CSRA, RSMA, shine-dalgarno; NMR {Pseudomonas fluorescens}
Probab=23.76 E-value=50 Score=20.23 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=16.0
Q ss_pred ceeEEcCCCeEEEEEEEEE
Q psy13107 133 GEVVIQEDDEIRLKIVGTR 151 (170)
Q Consensus 133 ~~~~~~~Gd~VrvrV~~v~ 151 (170)
.+..+.+||.|+++|.+++
T Consensus 8 ~GEsI~IGd~I~ItVl~v~ 26 (70)
T 2jpp_A 8 VGESINIGDDITITILGVS 26 (70)
T ss_dssp TTCEEEETTTEEEEEEEEE
T ss_pred CCCeEEECCCEEEEEEEEe
Confidence 3458889999999999986
No 78
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=22.92 E-value=55 Score=20.58 Aligned_cols=15 Identities=13% Similarity=0.266 Sum_probs=8.7
Q ss_pred eEEcCCCeEEEEEEE
Q psy13107 135 VVIQEDDEIRLKIVG 149 (170)
Q Consensus 135 ~~~~~Gd~VrvrV~~ 149 (170)
..++.|++|++.+.+
T Consensus 30 i~v~~G~tV~~~~~n 44 (100)
T 4hci_A 30 ITIPINESTTLLLKN 44 (100)
T ss_dssp EEECTTSCEEEEEEE
T ss_pred EEECCCCEEEEEEEc
Confidence 356666666665544
No 79
>1ywu_A Hypothetical protein PA4608; PAT7, beta barrel, PILZ domain, structural genomics, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.45.2.1
Probab=21.01 E-value=66 Score=22.20 Aligned_cols=21 Identities=10% Similarity=0.177 Sum_probs=19.7
Q ss_pred CCEEEEEEEEEecccEEEEec
Q psy13107 82 GEVLDAVVTQVNKVGMFAEIG 102 (170)
Q Consensus 82 gev~~g~V~~i~~~Gifv~lg 102 (170)
|..+.|++..++..|+.+.+.
T Consensus 48 g~~~~~~~~DiS~~G~~I~~~ 68 (149)
T 1ywu_A 48 ERRWEVLLHDVSLHGILVGQP 68 (149)
T ss_dssp TEEEEEEEEEECSSEEEEECS
T ss_pred CEEEEEEEEEeccccCEEEcC
Confidence 899999999999999999874
Done!