AmiGO: BLAST Results


BLAST match view associations BLAST with Rpb7 Rpb7 Rpb7	protein from Drosophila melanogaster	4.2e-79
BLAST match view associations BLAST with polr2gl polr2gl polr2gl polymerase (RNA) II (DNA directed) polypeptide G-like	gene_product from Danio rerio	2.1e-75
BLAST match view associations BLAST with POLR2G POLR2G POLR2G DNA-directed RNA polymerase II subunit RPB7	protein from Bos taurus	5.7e-75
BLAST match view associations BLAST with POLR2G POLR2G POLR2G DNA-directed RNA polymerase II subunit RPB7	protein from Homo sapiens	5.7e-75
BLAST match view associations BLAST with LOC100620235 LOC100620235 LOC100620235 Uncharacterized protein	protein from Sus scrofa	5.7e-75
BLAST match view associations BLAST with Polr2g Polr2g Polr2g polymerase (RNA) II (DNA directed) polypeptide G	protein from Mus musculus	5.7e-75
BLAST match view associations BLAST with Polr2g Polr2g Polr2g polymerase (RNA) II (DNA directed) polypeptide G	gene from Rattus norvegicus	5.7e-75
BLAST match view associations BLAST with rpb-7 rpb-7 rpb-7	gene from Caenorhabditis elegans	1.5e-67
BLAST match view associations BLAST with NRPB7 NRPB7 NRPB7 AT5G59180	protein from Arabidopsis thaliana	2.2e-50
BLAST match view associations BLAST with rpb7 rpb7 rpb7 DNA-directed RNA polymerase II subunit 7	gene from Dictyostelium discoideum	2.3e-48
BLAST match view associations BLAST with RPB7 RPB7 RPB7	gene_product from Candida albicans	5.7e-43
BLAST match view associations BLAST with RPB7 RPB7 RPB7 Likely RNA Pol II core complex subunit	protein from Candida albicans SC5314	5.7e-43
BLAST match view associations BLAST with POLR2G POLR2G POLR2G Uncharacterized protein	protein from Canis lupus familiaris	7.3e-43
BLAST match view associations BLAST with RPB7 RPB7 RPB7 RNA polymerase II subunit B16	gene from Saccharomyces cerevisiae	3.2e-33
BLAST match view associations BLAST with PF10_0269 PF10_0269 PF10_0269 DNA-directed RNA polymerase II, putative	gene from Plasmodium falciparum	9.8e-32
BLAST match view associations BLAST with PF10_0269 PF10_0269 PF10_0269 DNA-directed RNA polymerase II, putative	protein from Plasmodium falciparum 3D7	9.8e-32
BLAST match view associations BLAST with MGG_17442 MGG_17442 MGG_17442 Uncharacterized protein	protein from Magnaporthe oryzae 70-15	1.7e-27
BLAST match view associations BLAST with NRPE7 NRPE7 NRPE7 AT4G14660	protein from Arabidopsis thaliana	3.7e-16
BLAST match view associations BLAST with POLR2G POLR2G POLR2G DNA-directed RNA polymerase II subunit RPB7	protein from Homo sapiens	6.0e-16
BLAST match view associations BLAST with POLR2G POLR2G POLR2G DNA-directed RNA polymerase II subunit RPB7	protein from Homo sapiens	6.0e-16
BLAST match view associations BLAST with POLR2G POLR2G POLR2G DNA-directed RNA polymerase II subunit RPB7	protein from Homo sapiens	3.4e-13
BLAST match view associations BLAST with NRPD7 NRPD7 NRPD7 AT3G22900	protein from Arabidopsis thaliana	3.1e-12
BLAST match view associations BLAST with AT1G06790 AT1G06790 AT1G06790	protein from Arabidopsis thaliana	1.4e-09
BLAST match view associations BLAST with orf19.443 orf19.443 orf19.443	gene_product from Candida albicans	1.2e-08
BLAST match view associations BLAST with rpc25-2 rpc25-2 rpc25-2 RNA polymerase III subunit	gene from Dictyostelium discoideum	6.1e-08
BLAST match view associations BLAST with rpc25-1 rpc25-1 rpc25-1 RNA polymerase III subunit	gene from Dictyostelium discoideum	6.1e-08
BLAST match view associations BLAST with rpc-25 rpc-25 rpc-25	gene from Caenorhabditis elegans	2.3e-06
BLAST match view associations BLAST with POLR3H POLR3H POLR3H DNA-directed RNA polymerase III subunit RPC8	protein from Homo sapiens	0.00013

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy13107
        (170 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

FB|FBgn0051155 - symbol:Rpb7 "Rpb7" species:7227 "Drosoph...   795  4.2e-79   1
ZFIN|ZDB-GENE-030131-2808 - symbol:polr2gl "polymerase (R...   760  2.1e-75   1
UNIPROTKB|Q5E9B8 - symbol:POLR2G "DNA-directed RNA polyme...   756  5.7e-75   1
UNIPROTKB|P62487 - symbol:POLR2G "DNA-directed RNA polyme...   756  5.7e-75   1
UNIPROTKB|I3LJZ9 - symbol:POLR2G "Uncharacterized protein...   756  5.7e-75   1
MGI|MGI:1914960 - symbol:Polr2g "polymerase (RNA) II (DNA...   756  5.7e-75   1
RGD|621284 - symbol:Polr2g "polymerase (RNA) II (DNA dire...   756  5.7e-75   1
WB|WBGene00021845 - symbol:rpb-7 species:6239 "Caenorhabd...   686  1.5e-67   1
TAIR|locus:2168514 - symbol:NRPB7 species:3702 "Arabidops...   524  2.2e-50   1
DICTYBASE|DDB_G0284891 - symbol:rpb7 "DNA-directed RNA po...   505  2.3e-48   1
POMBASE|SPACUNK4.06c - symbol:rpb7 "DNA-directed RNA poly...   463  6.4e-44   1
CGD|CAL0004143 - symbol:RPB7 species:5476 "Candida albica...   454  5.7e-43   1
UNIPROTKB|Q5A8Y7 - symbol:RPB7 "Likely RNA Pol II core co...   454  5.7e-43   1
UNIPROTKB|F1PT38 - symbol:POLR2G "Uncharacterized protein...   453  7.3e-43   1
ASPGD|ASPL0000041983 - symbol:AN1521 species:162425 "Emer...   373  2.2e-34   1
SGD|S000002812 - symbol:RPB7 "RNA polymerase II subunit B...   362  3.2e-33   1
GENEDB_PFALCIPARUM|PF10_0269 - symbol:PF10_0269 "DNA-dire...   348  9.8e-32   1
UNIPROTKB|Q8IJC9 - symbol:PF10_0269 "DNA-directed RNA pol...   348  9.8e-32   1
UNIPROTKB|G4NBQ8 - symbol:MGG_17442 "Uncharacterized prot...   308  1.7e-27   1
TAIR|locus:2130060 - symbol:NRPE7 species:3702 "Arabidops...   201  3.7e-16   1
UNIPROTKB|E9PIU7 - symbol:POLR2G "DNA-directed RNA polyme...   199  6.0e-16   1
UNIPROTKB|E9PKH3 - symbol:POLR2G "DNA-directed RNA polyme...   199  6.0e-16   1
UNIPROTKB|H0YEE4 - symbol:POLR2G "DNA-directed RNA polyme...   173  3.4e-13   1
TAIR|locus:2084573 - symbol:NRPD7 species:3702 "Arabidops...   164  3.1e-12   1
TAIR|locus:2033077 - symbol:AT1G06790 species:3702 "Arabi...   139  1.4e-09   1
CGD|CAL0005692 - symbol:orf19.443 species:5476 "Candida a...   130  1.2e-08   1
POMBASE|SPBC2G5.07c - symbol:rpc25 "DNA-directed RNA poly...   125  4.2e-08   1
DICTYBASE|DDB_G0273523 - symbol:rpc25-2 "RNA polymerase I...   127  6.1e-08   1
DICTYBASE|DDB_G0273425 - symbol:rpc25-1 "RNA polymerase I...   127  6.1e-08   1
WB|WBGene00014111 - symbol:rpc-25 species:6239 "Caenorhab...   120  2.3e-06   1
UNIPROTKB|F8WDV1 - symbol:POLR3H "DNA-directed RNA polyme...    93  0.00013   1


>FB|FBgn0051155 [details] [associations]
            symbol:Rpb7 "Rpb7" species:7227 "Drosophila melanogaster"
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase II, core
            complex" evidence=ISS;IPI] [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
            InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 EMBL:AE014297
            GO:GO:0003723 GO:GO:0006366 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 GO:GO:0003899
            KO:K03015 GO:GO:0005665 eggNOG:COG1095 OMA:TRVDAND
            Gene3D:3.30.1490.120 SUPFAM:SSF88798 GeneTree:ENSGT00390000008975
            EMBL:BT023312 EMBL:BT029405 RefSeq:NP_731983.1 UniGene:Dm.35954
            UniGene:Dm.4143 SMR:Q9VFB5 STRING:Q9VFB5 EnsemblMetazoa:FBtr0083137
            GeneID:261631 KEGG:dme:Dmel_CG31155 UCSC:CG31155-RA CTD:261631
            FlyBase:FBgn0051155 InParanoid:Q9VFB5 OrthoDB:EOG46Q58R
            GenomeRNAi:261631 NextBio:843782 Uniprot:Q9VFB5
        Length = 173

 Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
 Identities = 150/170 (88%), Positives = 158/170 (92%)

Query:     1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
             MFYHISLE EILLHPRYFGPQL ETVKQKLYSEVEGTCTGKYGFVIAVTTID IG+G+IQ
Sbjct:     1 MFYHISLEQEILLHPRYFGPQLLETVKQKLYSEVEGTCTGKYGFVIAVTTIDQIGSGVIQ 60

Query:    61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
             PGQGFVVYPVKY+AIVFRPFKGEVLDAVV Q+NKVGMFAEIGPLSCFISHHSIP DMQFC
Sbjct:    61 PGQGFVVYPVKYKAIVFRPFKGEVLDAVVKQINKVGMFAEIGPLSCFISHHSIPADMQFC 120

Query:   121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
             PN NP CYKS   +VVI  +D+IRLKIVGTRVDA+GIFAIGTLMDDYLGL
Sbjct:   121 PNGNPPCYKSKDEDVVISGEDKIRLKIVGTRVDATGIFAIGTLMDDYLGL 170


>ZFIN|ZDB-GENE-030131-2808 [details] [associations]
            symbol:polr2gl "polymerase (RNA) II (DNA directed)
            polypeptide G-like" species:7955 "Danio rerio" [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
            complex" evidence=ISS] [GO:0004672 "protein kinase activity"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876
            ZFIN:ZDB-GENE-030131-2808 GO:GO:0006468 GO:GO:0003723 GO:GO:0006366
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 GO:GO:0003899 KO:K03015
            GO:GO:0005665 eggNOG:COG1095 HOGENOM:HOG000158201 OMA:TRVDAND
            Gene3D:3.30.1490.120 SUPFAM:SSF88798 GeneTree:ENSGT00390000008975
            HOVERGEN:HBG055233 OrthoDB:EOG451DRZ EMBL:BC045299 IPI:IPI00493928
            RefSeq:NP_955963.1 UniGene:Dr.2883 ProteinModelPortal:Q7ZW41
            SMR:Q7ZW41 STRING:Q7ZW41 PRIDE:Q7ZW41 Ensembl:ENSDART00000078557
            GeneID:324088 KEGG:dre:324088 CTD:324088 InParanoid:Q7ZW41
            NextBio:20808583 Bgee:Q7ZW41 Uniprot:Q7ZW41
        Length = 172

 Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
 Identities = 141/170 (82%), Positives = 159/170 (93%)

Query:     1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
             MFYHISLEHEILLHPRYFGP L  TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct:     1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query:    61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
             PG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F 
Sbjct:    61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query:   121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
             PNSNP CYK+V  +VVIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct:   121 PNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 170


>UNIPROTKB|Q5E9B8 [details] [associations]
            symbol:POLR2G "DNA-directed RNA polymerase II subunit RPB7"
            species:9913 "Bos taurus" [GO:0005665 "DNA-directed RNA polymerase
            II, core complex" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0004672 "protein kinase activity" evidence=ISS] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
            InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 GO:GO:0003723
            GO:GO:0004672 GO:GO:0006366 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 GO:GO:0003899
            KO:K03015 GO:GO:0005665 eggNOG:COG1095 HOGENOM:HOG000158201
            OMA:TRVDAND Gene3D:3.30.1490.120 SUPFAM:SSF88798 EMBL:BT021002
            IPI:IPI00688959 RefSeq:NP_001015633.1 UniGene:Bt.9092
            ProteinModelPortal:Q5E9B8 SMR:Q5E9B8 STRING:Q5E9B8
            Ensembl:ENSBTAT00000012481 GeneID:526320 KEGG:bta:526320 CTD:5436
            GeneTree:ENSGT00390000008975 HOVERGEN:HBG055233 InParanoid:Q5E9B8
            OrthoDB:EOG451DRZ NextBio:20874346 Uniprot:Q5E9B8
        Length = 172

 Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
 Identities = 139/170 (81%), Positives = 159/170 (93%)

Query:     1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
             MFYHISLEHEILLHPRYFGP L  TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct:     1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query:    61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
             PG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F 
Sbjct:    61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query:   121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
             PNSNP CYK++  ++VIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct:   121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 170


>UNIPROTKB|P62487 [details] [associations]
            symbol:POLR2G "DNA-directed RNA polymerase II subunit RPB7"
            species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0006915 "apoptotic process" evidence=IEA] [GO:0004672 "protein
            kinase activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=IDA;TAS] [GO:0005665 "DNA-directed RNA polymerase II, core
            complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281
            "DNA repair" evidence=TAS] [GO:0006283 "transcription-coupled
            nucleotide-excision repair" evidence=TAS] [GO:0006289
            "nucleotide-excision repair" evidence=TAS] [GO:0006367
            "transcription initiation from RNA polymerase II promoter"
            evidence=TAS] [GO:0006368 "transcription elongation from RNA
            polymerase II promoter" evidence=TAS] [GO:0006370
            "7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
            splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
            [GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
            "positive regulation of viral transcription" evidence=TAS]
            [GO:0006468 "protein phosphorylation" evidence=IDA]
            Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR003029
            InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 Reactome:REACT_116125
            GO:GO:0006915 GO:GO:0016032 EMBL:CH471076 Reactome:REACT_1675
            GO:GO:0006468 GO:GO:0003723 GO:GO:0006368 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006367 GO:GO:0000398
            Reactome:REACT_1788 GO:GO:0006370 GO:GO:0050434 GO:GO:0006283
            Reactome:REACT_1892 InterPro:IPR022967 SMART:SM00316 GO:GO:0003899
            KO:K03015 GO:GO:0005665 PDB:2C35 PDBsum:2C35 eggNOG:COG1095
            HOGENOM:HOG000158201 OMA:TRVDAND Gene3D:3.30.1490.120
            SUPFAM:SSF88798 CTD:5436 HOVERGEN:HBG055233 OrthoDB:EOG451DRZ
            EMBL:U20659 EMBL:U52427 EMBL:AK312131 EMBL:BC112162 EMBL:BC112164
            IPI:IPI00218895 RefSeq:NP_002687.1 UniGene:Hs.14839
            ProteinModelPortal:P62487 SMR:P62487 DIP:DIP-32663N IntAct:P62487
            MINT:MINT-1033626 STRING:P62487 PhosphoSite:P62487 DMDM:50403601
            PaxDb:P62487 PeptideAtlas:P62487 PRIDE:P62487
            Ensembl:ENST00000301788 GeneID:5436 KEGG:hsa:5436 UCSC:uc001nva.3
            GeneCards:GC11P062529 HGNC:HGNC:9194 MIM:602013 neXtProt:NX_P62487
            PharmGKB:PA33514 InParanoid:P62487 PhylomeDB:P62487
            EvolutionaryTrace:P62487 GenomeRNAi:5436 NextBio:21033
            ArrayExpress:P62487 Bgee:P62487 CleanEx:HS_POLR2G
            Genevestigator:P62487 GermOnline:ENSG00000168002 Uniprot:P62487
        Length = 172

 Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
 Identities = 139/170 (81%), Positives = 159/170 (93%)

Query:     1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
             MFYHISLEHEILLHPRYFGP L  TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct:     1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query:    61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
             PG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F 
Sbjct:    61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query:   121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
             PNSNP CYK++  ++VIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct:   121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 170


>UNIPROTKB|I3LJZ9 [details] [associations]
            symbol:POLR2G "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
            complex" evidence=IEA] [GO:0004672 "protein kinase activity"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876
            GO:GO:0003723 GO:GO:0004672 GO:GO:0006366 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
            GO:GO:0003899 KO:K03015 GO:GO:0005665 OMA:TRVDAND
            Gene3D:3.30.1490.120 SUPFAM:SSF88798 GeneTree:ENSGT00390000008975
            EMBL:FP312617 RefSeq:XP_003353863.1 ProteinModelPortal:I3LJZ9
            SMR:I3LJZ9 Ensembl:ENSSSCT00000022560 GeneID:100620235
            KEGG:ssc:100620235 Uniprot:I3LJZ9
        Length = 172

 Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
 Identities = 139/170 (81%), Positives = 159/170 (93%)

Query:     1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
             MFYHISLEHEILLHPRYFGP L  TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct:     1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query:    61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
             PG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F 
Sbjct:    61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query:   121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
             PNSNP CYK++  ++VIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct:   121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 170


>MGI|MGI:1914960 [details] [associations]
            symbol:Polr2g "polymerase (RNA) II (DNA directed)
            polypeptide G" species:10090 "Mus musculus" [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005665 "DNA-directed RNA polymerase II, core complex"
            evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
            evidence=ISO] [GO:0016740 "transferase activity" evidence=IEA]
            [GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
            InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876
            MGI:MGI:1914960 GO:GO:0006915 GO:GO:0003723 GO:GO:0004672
            GO:GO:0006366 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 GO:GO:0003899 KO:K03015
            GO:GO:0005665 eggNOG:COG1095 HOGENOM:HOG000158201 OMA:TRVDAND
            Gene3D:3.30.1490.120 SUPFAM:SSF88798 CTD:5436
            GeneTree:ENSGT00390000008975 HOVERGEN:HBG055233 OrthoDB:EOG451DRZ
            EMBL:AK010687 EMBL:AK011627 EMBL:AK013134 EMBL:AK017473
            EMBL:BC005580 EMBL:BC055278 IPI:IPI00263106 RefSeq:NP_080605.1
            UniGene:Mm.22117 ProteinModelPortal:P62488 SMR:P62488 STRING:P62488
            PhosphoSite:P62488 REPRODUCTION-2DPAGE:P62488 PaxDb:P62488
            PRIDE:P62488 Ensembl:ENSMUST00000096261 GeneID:67710 KEGG:mmu:67710
            UCSC:uc008gna.1 InParanoid:P62488 NextBio:325333 Bgee:P62488
            CleanEx:MM_POLR2G Genevestigator:P62488
            GermOnline:ENSMUSG00000071662 Uniprot:P62488
        Length = 172

 Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
 Identities = 139/170 (81%), Positives = 159/170 (93%)

Query:     1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
             MFYHISLEHEILLHPRYFGP L  TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct:     1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query:    61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
             PG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F 
Sbjct:    61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query:   121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
             PNSNP CYK++  ++VIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct:   121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 170


>RGD|621284 [details] [associations]
            symbol:Polr2g "polymerase (RNA) II (DNA directed) polypeptide G"
            species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0004672
            "protein kinase activity" evidence=ISO;ISS] [GO:0005575
            "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=ISO;ISS] [GO:0005665 "DNA-directed RNA polymerase II, core
            complex" evidence=ISO;ISS] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=ISO;ISS] [GO:0006468 "protein
            phosphorylation" evidence=ISO] [GO:0006915 "apoptotic process"
            evidence=IEP] InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575
            Pfam:PF03876 RGD:621284 GO:GO:0006915 GO:GO:0003723 GO:GO:0004672
            GO:GO:0006366 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 GO:GO:0003899 KO:K03015
            GO:GO:0005665 eggNOG:COG1095 HOGENOM:HOG000158201 OMA:TRVDAND
            Gene3D:3.30.1490.120 SUPFAM:SSF88798 CTD:5436
            GeneTree:ENSGT00390000008975 HOVERGEN:HBG055233 OrthoDB:EOG451DRZ
            EMBL:Z71925 EMBL:BC060550 EMBL:BC060595 IPI:IPI00326378
            RefSeq:NP_446400.1 UniGene:Rn.106248 ProteinModelPortal:P62489
            SMR:P62489 STRING:P62489 PRIDE:P62489 Ensembl:ENSRNOT00000026313
            GeneID:117017 KEGG:rno:117017 UCSC:RGD:621284 InParanoid:P62489
            NextBio:619759 Genevestigator:P62489 GermOnline:ENSRNOG00000019439
            Uniprot:P62489
        Length = 172

 Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
 Identities = 139/170 (81%), Positives = 159/170 (93%)

Query:     1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
             MFYHISLEHEILLHPRYFGP L  TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct:     1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query:    61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
             PG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F 
Sbjct:    61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query:   121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
             PNSNP CYK++  ++VIQ+DDEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct:   121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 170


>WB|WBGene00021845 [details] [associations]
            symbol:rpb-7 species:6239 "Caenorhabditis elegans"
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0004601 "peroxidase activity"
            evidence=IEA] [GO:0055114 "oxidation-reduction process"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0009790 "embryo development"
            evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
            evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
            "nematode larval development" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0006898 "receptor-mediated
            endocytosis" evidence=IMP] [GO:0043652 "engulfment of apoptotic
            cell" evidence=IMP] InterPro:IPR003029 InterPro:IPR005576
            Pfam:PF00575 Pfam:PF03876 PROSITE:PS50126 GO:GO:0009792
            GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0000003
            GO:GO:0006351 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 GO:GO:0043652 InterPro:IPR022967 SMART:SM00316
            GO:GO:0003899 GO:GO:0001703 KO:K03015 eggNOG:COG1095
            HOGENOM:HOG000158201 OMA:TRVDAND Gene3D:3.30.1490.120
            SUPFAM:SSF88798 GeneTree:ENSGT00390000008975 EMBL:FO081636
            RefSeq:NP_491093.1 HSSP:Q57840 ProteinModelPortal:Q9N3C9 SMR:Q9N3C9
            STRING:Q9N3C9 PaxDb:Q9N3C9 EnsemblMetazoa:Y54E10BR.6 GeneID:171877
            KEGG:cel:CELE_Y54E10BR.6 UCSC:Y54E10BR.6 CTD:171877
            WormBase:Y54E10BR.6 InParanoid:Q9N3C9 NextBio:873067 Uniprot:Q9N3C9
        Length = 197

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 124/170 (72%), Positives = 149/170 (87%)

Query:     1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
             MF+H+SL+HE+ LHP+YFGP L ET+K KL++EVEGTCTGKYGFVIAVTTID+IG GLIQ
Sbjct:    24 MFFHLSLDHEVCLHPKYFGPNLNETIKMKLFNEVEGTCTGKYGFVIAVTTIDTIGHGLIQ 83

Query:    61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
             PG+GFV+YPV+Y+AIVFRPFKG+V+D VVTQVNKVG+F +IGPLSCFIS H IP DM+F 
Sbjct:    84 PGRGFVIYPVRYKAIVFRPFKGQVVDGVVTQVNKVGIFCDIGPLSCFISRHCIPPDMEFD 143

Query:   121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
             PNS   CYK+     VI+ DDEIR+K++GTRVDA+ IFAIGTLMDD+LGL
Sbjct:   144 PNSEKPCYKTNDEANVIRNDDEIRVKLIGTRVDANDIFAIGTLMDDFLGL 193


>TAIR|locus:2168514 [details] [associations]
            symbol:NRPB7 species:3702 "Arabidopsis thaliana"
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA;ISS] [GO:0005665 "DNA-directed RNA polymerase II, core
            complex" evidence=IPI] [GO:0000394 "RNA splicing, via
            endonucleolytic cleavage and ligation" evidence=RCA] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=RCA]
            InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006351 GO:GO:0003723
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AB016890
            InterPro:IPR022967 SMART:SM00316 GO:GO:0003899 KO:K03015
            GO:GO:0005665 EMBL:M90505 EMBL:BT005667 IPI:IPI00518175 PIR:A44457
            RefSeq:NP_200726.1 UniGene:At.29242 ProteinModelPortal:P38421
            SMR:P38421 STRING:P38421 PaxDb:P38421 PRIDE:P38421
            EnsemblPlants:AT5G59180.1 GeneID:836036 KEGG:ath:AT5G59180
            TAIR:At5g59180 eggNOG:COG1095 HOGENOM:HOG000158201
            InParanoid:P38421 OMA:TRVDAND PhylomeDB:P38421
            ProtClustDB:CLSN2686299 Genevestigator:P38421 GermOnline:AT5G59180
            Gene3D:3.30.1490.120 SUPFAM:SSF88798 Uniprot:P38421
        Length = 176

 Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 97/170 (57%), Positives = 128/170 (75%)

Query:     1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
             MF+HI LE  + LHPR+FG  L E +  KL  +VEGTC+G++GFV+A+T ID+IG GLI+
Sbjct:     1 MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query:    61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
              G GFV +PVKY+ +VFRPFKGE+L+AVVT VNK+G FAE GP+  F+S H IP DM+F 
Sbjct:    61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query:   121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
                 P  Y +  G V IQ++ E+RLKI+GTRVDA+ IF +GT+ DD+LG+
Sbjct:   121 AGDMPN-YTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGV 169


>DICTYBASE|DDB_G0284891 [details] [associations]
            symbol:rpb7 "DNA-directed RNA polymerase II subunit
            7" species:44689 "Dictyostelium discoideum" [GO:0016591
            "DNA-directed RNA polymerase II, holoenzyme" evidence=ISS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=IGI] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;IGI] [GO:0003697 "single-stranded DNA binding"
            evidence=ISS] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
            evidence=RCA] InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575
            Pfam:PF03876 dictyBase:DDB_G0284891 GenomeReviews:CM000153_GR
            EMBL:AAFI02000073 GO:GO:0003723 GO:GO:0006366 GO:GO:0003697
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0016591
            InterPro:IPR022967 SMART:SM00316 GO:GO:0003899 KO:K03015
            eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798
            RefSeq:XP_639913.1 HSSP:P62487 ProteinModelPortal:Q54P04 SMR:Q54P04
            STRING:Q54P04 PRIDE:Q54P04 EnsemblProtists:DDB0216295
            GeneID:8624825 KEGG:ddi:DDB_G0284891 OMA:HAIGSIK
            ProtClustDB:PTZ00162 Uniprot:Q54P04
        Length = 172

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 91/170 (53%), Positives = 127/170 (74%)

Query:     1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
             MF+H++LE ++ +HP++ GP L+    Q+LYSEVEGTCTG+YGF+I +T++D +  G + 
Sbjct:     1 MFFHLTLEKDLHMHPKHCGPNLFTIATQQLYSEVEGTCTGRYGFIITITSVDFLSKGKVL 60

Query:    61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
                G+VV+ VKY+AI+F+PFKGEVLDA+VT+V  +G FAE GPLS F+S   IP+DM F 
Sbjct:    61 ESSGYVVFNVKYKAIIFKPFKGEVLDAIVTKVTNLGFFAEAGPLSIFVSTQLIPSDMIFD 120

Query:   121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
               S   C+ S  G   I +DDE+RL+I GTRVDA+ IFAIG++ +DYLG+
Sbjct:   121 AQSAVPCFVSEDGSSKISKDDEVRLQIKGTRVDATEIFAIGSIREDYLGV 170


>POMBASE|SPACUNK4.06c [details] [associations]
            symbol:rpb7 "DNA-directed RNA polymerase complex II
            subunit Rpb7" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=ISM] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006367 "transcription initiation from
            RNA polymerase II promoter" evidence=TAS] [GO:0016591 "DNA-directed
            RNA polymerase II, holoenzyme" evidence=IC] [GO:0031123 "RNA 3'-end
            processing" evidence=IPI] [GO:0097394 "telomeric RNA transcription
            from RNA pol II promoter" evidence=IMP] [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=IDA] InterPro:IPR003029
            InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 PomBase:SPACUNK4.06c
            GO:GO:0005829 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003723
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006367
            GO:GO:0016591 InterPro:IPR022967 SMART:SM00316 GO:GO:0003899
            KO:K03015 GO:GO:0031123 PDB:3H0G PDBsum:3H0G eggNOG:COG1095
            HOGENOM:HOG000158201 OMA:TRVDAND Gene3D:3.30.1490.120
            SUPFAM:SSF88798 EMBL:D89594 EMBL:D86554 EMBL:AF027821 EMBL:AF055916
            PIR:T39254 RefSeq:XP_001713072.1 ProteinModelPortal:O14459
            IntAct:O14459 MINT:MINT-1213963 STRING:O14459
            EnsemblFungi:SPACUNK4.06c.1 GeneID:2542097 KEGG:spo:SPACUNK4.06c
            OrthoDB:EOG4JT3FQ EvolutionaryTrace:O14459 NextBio:20803169
            GO:GO:0097394 Uniprot:O14459
        Length = 172

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 90/172 (52%), Positives = 123/172 (71%)

Query:     2 FYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAV---TTIDSIGAGL 58
             F+   L   I LHP YFGP++ + +K KL ++VEGTC+G+YG++I V    TID I  G 
Sbjct:     3 FFLKELSLTISLHPSYFGPRMQDYLKAKLLADVEGTCSGQYGYIICVLDSNTID-IDKGR 61

Query:    59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
             + PGQGF  + VKYRA+++RPF+GEV+DA+VT VNK+G FA IGPL+ F+S H +P DM+
Sbjct:    62 VVPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMK 121

Query:   119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
             F P +NP  Y     + VI++   +RLKIVGTR DA+ IFAI T+ +DYLG+
Sbjct:   122 FDPTANPPNYSGE--DQVIEKGSNVRLKIVGTRTDATEIFAIATMKEDYLGV 171


>CGD|CAL0004143 [details] [associations]
            symbol:RPB7 species:5476 "Candida albicans" [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA;IGI;ISS]
            [GO:0005665 "DNA-directed RNA polymerase II, core complex"
            evidence=IGI;ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IGI;ISS] [GO:0042493 "response to drug"
            evidence=IMP] [GO:0005829 "cytosol" evidence=IEA] [GO:0000932
            "cytoplasmic mRNA processing body" evidence=IEA] [GO:0031123 "RNA
            3'-end processing" evidence=IEA] [GO:0000291 "nuclear-transcribed
            mRNA catabolic process, exonucleolytic" evidence=IEA] [GO:0060213
            "positive regulation of nuclear-transcribed mRNA poly(A) tail
            shortening" evidence=IEA] [GO:0045948 "positive regulation of
            translational initiation" evidence=IEA] [GO:0006367 "transcription
            initiation from RNA polymerase II promoter" evidence=IEA]
            [GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0031369
            "translation initiation factor binding" evidence=IEA] [GO:0003968
            "RNA-directed RNA polymerase activity" evidence=IEA] [GO:0003727
            "single-stranded RNA binding" evidence=IEA] InterPro:IPR003029
            InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 PROSITE:PS50126
            CGD:CAL0004143 GO:GO:0042493 GO:GO:0003723 GO:GO:0006366
            Gene3D:2.40.50.140 InterPro:IPR012340 EMBL:AACQ01000045
            EMBL:AACQ01000042 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
            GO:GO:0003899 KO:K03015 GO:GO:0005665 eggNOG:COG1095
            Gene3D:3.30.1490.120 SUPFAM:SSF88798 RefSeq:XP_718170.1
            RefSeq:XP_718437.1 ProteinModelPortal:Q5A8Y7 SMR:Q5A8Y7
            STRING:Q5A8Y7 GeneID:3639930 GeneID:3640221 KEGG:cal:CaO19.10855
            KEGG:cal:CaO19.3347 Uniprot:Q5A8Y7
        Length = 173

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 87/172 (50%), Positives = 124/172 (72%)

Query:     1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVT---TIDSIGAG 57
             MF+   L   + LHP +FGPQ+ + +++KL S+VEGTCTG++G+++ V     ID +G G
Sbjct:     1 MFFLKDLSLNLTLHPSFFGPQMDQYLREKLLSDVEGTCTGQFGYIVCVLDSMNID-VGKG 59

Query:    58 LIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDM 117
              I P  G   + VKYRA+V++PFKGEV+DAVVT VNK+G FA++GPLS F+S H IP+DM
Sbjct:    60 RIIPSTGMAEFEVKYRAVVWKPFKGEVVDAVVTTVNKMGFFADVGPLSVFVSTHLIPSDM 119

Query:   118 QFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
             +F P++NP  Y  V  +  I++   +RLKIVGTR D + I+AIG++ +DYLG
Sbjct:   120 KFNPSANPPAY--VSPDENIEKGSRVRLKIVGTRTDVNEIYAIGSIKEDYLG 169


>UNIPROTKB|Q5A8Y7 [details] [associations]
            symbol:RPB7 "Likely RNA Pol II core complex subunit"
            species:237561 "Candida albicans SC5314" [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=IGI] [GO:0005665 "DNA-directed
            RNA polymerase II, core complex" evidence=IGI] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=IGI]
            [GO:0042493 "response to drug" evidence=IMP] InterPro:IPR003029
            InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 PROSITE:PS50126
            CGD:CAL0004143 GO:GO:0042493 GO:GO:0003723 GO:GO:0006366
            Gene3D:2.40.50.140 InterPro:IPR012340 EMBL:AACQ01000045
            EMBL:AACQ01000042 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
            GO:GO:0003899 KO:K03015 GO:GO:0005665 eggNOG:COG1095
            Gene3D:3.30.1490.120 SUPFAM:SSF88798 RefSeq:XP_718170.1
            RefSeq:XP_718437.1 ProteinModelPortal:Q5A8Y7 SMR:Q5A8Y7
            STRING:Q5A8Y7 GeneID:3639930 GeneID:3640221 KEGG:cal:CaO19.10855
            KEGG:cal:CaO19.3347 Uniprot:Q5A8Y7
        Length = 173

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 87/172 (50%), Positives = 124/172 (72%)

Query:     1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVT---TIDSIGAG 57
             MF+   L   + LHP +FGPQ+ + +++KL S+VEGTCTG++G+++ V     ID +G G
Sbjct:     1 MFFLKDLSLNLTLHPSFFGPQMDQYLREKLLSDVEGTCTGQFGYIVCVLDSMNID-VGKG 59

Query:    58 LIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDM 117
              I P  G   + VKYRA+V++PFKGEV+DAVVT VNK+G FA++GPLS F+S H IP+DM
Sbjct:    60 RIIPSTGMAEFEVKYRAVVWKPFKGEVVDAVVTTVNKMGFFADVGPLSVFVSTHLIPSDM 119

Query:   118 QFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
             +F P++NP  Y  V  +  I++   +RLKIVGTR D + I+AIG++ +DYLG
Sbjct:   120 KFNPSANPPAY--VSPDENIEKGSRVRLKIVGTRTDVNEIYAIGSIKEDYLG 169


>UNIPROTKB|F1PT38 [details] [associations]
            symbol:POLR2G "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] InterPro:IPR005576 Pfam:PF03876 GO:GO:0006351
            GO:GO:0003899 Gene3D:3.30.1490.120 SUPFAM:SSF88798
            GeneTree:ENSGT00390000008975 EMBL:AAEX03011662
            Ensembl:ENSCAFT00000024524 Uniprot:F1PT38
        Length = 118

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 84/98 (85%), Positives = 93/98 (94%)

Query:     1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
             MFYHISLEHEILLHPRYFGP L  TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct:     1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query:    61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMF 98
             PG+GFV+YPVKY+AIVFRPFKGEV+DAVVTQVNKV  +
Sbjct:    61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVSPY 98


>ASPGD|ASPL0000041983 [details] [associations]
            symbol:AN1521 species:162425 "Emericella nidulans"
            [GO:0005665 "DNA-directed RNA polymerase II, core complex"
            evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000932
            "cytoplasmic mRNA processing body" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003697
            "single-stranded DNA binding" evidence=IEA] [GO:0031369
            "translation initiation factor binding" evidence=IEA] [GO:0003968
            "RNA-directed RNA polymerase activity" evidence=IEA] [GO:0003727
            "single-stranded RNA binding" evidence=IEA] [GO:0031123 "RNA 3'-end
            processing" evidence=IEA] [GO:0097394 "telomeric RNA transcription
            from RNA pol II promoter" evidence=IEA] [GO:0000291
            "nuclear-transcribed mRNA catabolic process, exonucleolytic"
            evidence=IEA] [GO:0060213 "positive regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
            [GO:0045948 "positive regulation of translational initiation"
            evidence=IEA] [GO:0006367 "transcription initiation from RNA
            polymerase II promoter" evidence=IEA] InterPro:IPR003029
            InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 EMBL:BN001307
            GO:GO:0006351 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 GO:GO:0003899
            KO:K03015 eggNOG:COG1095 HOGENOM:HOG000158201 Gene3D:3.30.1490.120
            SUPFAM:SSF88798 OMA:HAIGSIK OrthoDB:EOG4JT3FQ EMBL:AACD01000024
            RefSeq:XP_659125.1 STRING:Q5BD59 EnsemblFungi:CADANIAT00008149
            GeneID:2875079 KEGG:ani:AN1521.2 Uniprot:Q5BD59
        Length = 169

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 76/169 (44%), Positives = 107/169 (63%)

Query:     1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
             MF+       I LHP YFGP + E +  +L  E EG CTG + FVI V  +  IG G + 
Sbjct:     1 MFFLKEETKVITLHPSYFGPNVREYLINRLNEEEEGRCTGDH-FVICVMDMVDIGEGRVL 59

Query:    61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
             PG G   Y +KYRAI+++PF+GE +DA+VT V   G+F   GPLS FI+  +IP+D+++ 
Sbjct:    60 PGNGQAEYTIKYRAIIWKPFRGETVDALVTSVKPTGIFTLAGPLSVFIARKNIPSDIRWE 119

Query:   121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
             PN+ P  Y   H + VI++   +RLKI+G + D + I AIGT+ +DYLG
Sbjct:   120 PNTVPPQYTD-HADQVIEKGTSLRLKILGVKPDVAAINAIGTIKEDYLG 167


>SGD|S000002812 [details] [associations]
            symbol:RPB7 "RNA polymerase II subunit B16" species:4932
            "Saccharomyces cerevisiae" [GO:0003727 "single-stranded RNA
            binding" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
            evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0045948 "positive regulation of
            translational initiation" evidence=IMP] [GO:0031369 "translation
            initiation factor binding" evidence=IPI] [GO:0006366 "transcription
            from RNA polymerase II promoter" evidence=IGI] [GO:0003697
            "single-stranded DNA binding" evidence=IMP;IDA] [GO:0006367
            "transcription initiation from RNA polymerase II promoter"
            evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=IEA;IDA] [GO:0060213 "positive regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP]
            [GO:0000291 "nuclear-transcribed mRNA catabolic process,
            exonucleolytic" evidence=IGI] [GO:0003968 "RNA-directed RNA
            polymerase activity" evidence=IDA] [GO:0005665 "DNA-directed RNA
            polymerase II, core complex" evidence=IDA] InterPro:IPR003029
            InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 SGD:S000002812
            GO:GO:0003727 EMBL:BK006938 GO:GO:0003697 GO:GO:0000932
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006367
            EMBL:U32274 GO:GO:0045948 GO:GO:0060213 InterPro:IPR022967
            SMART:SM00316 GO:GO:0003899 GO:GO:0000291 RefSeq:NP_010692.3
            GeneID:852013 KEGG:sce:YDR404C KO:K03015 GO:GO:0005665 KO:K00601
            RefSeq:NP_010696.3 GeneID:852017 KEGG:sce:YDR408C PDB:1NT9 PDB:1PQV
            PDB:1WCM PDB:1Y1V PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63 PDB:2B8K
            PDB:2JA5 PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2R7Z PDB:2R92 PDB:2R93
            PDB:2VUM PDB:3FKI PDB:3H3V PDB:3HOU PDB:3HOV PDB:3HOW PDB:3HOX
            PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F PDB:3PO2 PDB:3PO3
            PDB:3QT1 PDB:4A3B PDB:4A3C PDB:4A3D PDB:4A3E PDB:4A3F PDB:4A3G
            PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L PDB:4A3M PDB:4A93 PDB:4BBR
            PDB:4BBS PDBsum:1NT9 PDBsum:1PQV PDBsum:1WCM PDBsum:1Y1V
            PDBsum:1Y1W PDBsum:1Y1Y PDBsum:1Y77 PDBsum:2B63 PDBsum:2B8K
            PDBsum:2JA5 PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8 PDBsum:2R7Z
            PDBsum:2R92 PDBsum:2R93 PDBsum:2VUM PDBsum:3FKI PDBsum:3H3V
            PDBsum:3HOU PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX PDBsum:3HOY
            PDBsum:3HOZ PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F PDBsum:3PO2
            PDBsum:3PO3 PDBsum:3QT1 PDBsum:4A3B PDBsum:4A3C PDBsum:4A3D
            PDBsum:4A3E PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I PDBsum:4A3J
            PDBsum:4A3K PDBsum:4A3L PDBsum:4A3M PDBsum:4A93 PDBsum:4BBR
            PDBsum:4BBS PDB:1Y14 PDBsum:1Y14 eggNOG:COG1095
            HOGENOM:HOG000158201 Gene3D:3.30.1490.120 SUPFAM:SSF88798
            GeneTree:ENSGT00390000008975 OMA:HAIGSIK OrthoDB:EOG4JT3FQ
            EMBL:S59775 PIR:S30140 ProteinModelPortal:P34087 SMR:P34087
            DIP:DIP-725N IntAct:P34087 MINT:MINT-539630 STRING:P34087
            PaxDb:P34087 PeptideAtlas:P34087 EnsemblFungi:YDR404C CYGD:YDR404c
            EvolutionaryTrace:P34087 NextBio:970216 Genevestigator:P34087
            GermOnline:YDR404C Uniprot:P34087
        Length = 171

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 74/171 (43%), Positives = 104/171 (60%)

Query:     1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGA--GL 58
             MF+   L   I LHP +FGP++ + +K KL  EVEG+CTGK+G+++ V   D+I    G 
Sbjct:     1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGR 60

Query:    59 IQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQ 118
             I P  G   + VKYRA+VF+PFKGEV+D  V   ++ G   ++GP+  F++ H +P D+ 
Sbjct:    61 ILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLT 120

Query:   119 FCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
             F   SNP  Y+S   E VI     IR+KI G     S I AIG++ +DYLG
Sbjct:   121 FNAGSNPPSYQS--SEDVITIKSRIRVKIEGCISQVSSIHAIGSIKEDYLG 169


>GENEDB_PFALCIPARUM|PF10_0269 [details] [associations]
            symbol:PF10_0269 "DNA-directed RNA polymerase
            II, putative" species:5833 "Plasmodium falciparum" [GO:0005665
            "DNA-directed RNA polymerase II, core complex" evidence=ISS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISS] InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575
            Pfam:PF03876 GO:GO:0003723 GO:GO:0006366 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AE014185 GO:GO:0003899
            KO:K03015 GO:GO:0005665 HOGENOM:HOG000158201 Gene3D:3.30.1490.120
            SUPFAM:SSF88798 OMA:HAIGSIK ProtClustDB:PTZ00162
            RefSeq:XP_001347553.1 ProteinModelPortal:Q8IJC9
            EnsemblProtists:PF10_0269:mRNA GeneID:810426 KEGG:pfa:PF10_0269
            EuPathDB:PlasmoDB:PF3D7_1027400 Uniprot:Q8IJC9
        Length = 177

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 70/169 (41%), Positives = 104/169 (61%)

Query:     1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
             M++ I     +++ P   GP+  + ++  L + VEG C+ KYG+VI V  I     G +Q
Sbjct:     1 MYFVIEEWKNVIIKPSQLGPRYQQYIEDMLRNSVEGQCSVKYGYVICVIRIIHSEPGRVQ 60

Query:    61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
              G G +V  VKY+AIVF+PFK EVLDA+VT VNK+G FA+ GPL  FIS  +IP   ++ 
Sbjct:    61 DGTGMIVVKVKYQAIVFKPFKDEVLDAIVTDVNKLGFFAQAGPLKIFISRTAIPKYFEYS 120

Query:   121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
              + +  C+ S  G+  I+    +R+K+ G R D S +FAI T+ ++YLG
Sbjct:   121 EDLHYPCFSS--GDYNIKPQTTVRIKLQGIRYDLSNMFAIATINNEYLG 167


>UNIPROTKB|Q8IJC9 [details] [associations]
            symbol:PF10_0269 "DNA-directed RNA polymerase II, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0005665 "DNA-directed
            RNA polymerase II, core complex" evidence=ISS] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=ISS]
            InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876
            GO:GO:0003723 GO:GO:0006366 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 EMBL:AE014185 GO:GO:0003899 KO:K03015 GO:GO:0005665
            HOGENOM:HOG000158201 Gene3D:3.30.1490.120 SUPFAM:SSF88798
            OMA:HAIGSIK ProtClustDB:PTZ00162 RefSeq:XP_001347553.1
            ProteinModelPortal:Q8IJC9 EnsemblProtists:PF10_0269:mRNA
            GeneID:810426 KEGG:pfa:PF10_0269 EuPathDB:PlasmoDB:PF3D7_1027400
            Uniprot:Q8IJC9
        Length = 177

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 70/169 (41%), Positives = 104/169 (61%)

Query:     1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
             M++ I     +++ P   GP+  + ++  L + VEG C+ KYG+VI V  I     G +Q
Sbjct:     1 MYFVIEEWKNVIIKPSQLGPRYQQYIEDMLRNSVEGQCSVKYGYVICVIRIIHSEPGRVQ 60

Query:    61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
              G G +V  VKY+AIVF+PFK EVLDA+VT VNK+G FA+ GPL  FIS  +IP   ++ 
Sbjct:    61 DGTGMIVVKVKYQAIVFKPFKDEVLDAIVTDVNKLGFFAQAGPLKIFISRTAIPKYFEYS 120

Query:   121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
              + +  C+ S  G+  I+    +R+K+ G R D S +FAI T+ ++YLG
Sbjct:   121 EDLHYPCFSS--GDYNIKPQTTVRIKLQGIRYDLSNMFAIATINNEYLG 167


>UNIPROTKB|G4NBQ8 [details] [associations]
            symbol:MGG_17442 "Uncharacterized protein" species:242507
            "Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
            evidence=ND] InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575
            Pfam:PF03876 EMBL:CM001235 GO:GO:0006351 GO:GO:0003723
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003899
            Gene3D:3.30.1490.120 SUPFAM:SSF88798 RefSeq:XP_003718550.1
            ProteinModelPortal:G4NBQ8 EnsemblFungi:MGG_17442T0 GeneID:12984117
            KEGG:mgr:MGG_17442 Uniprot:G4NBQ8
        Length = 172

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 61/169 (36%), Positives = 98/169 (57%)

Query:     1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
             MF+  +LE  + LHP +FG  ++E V Q+L ++ EGTC G + ++I+V     I  G I 
Sbjct:     1 MFFLHNLERVVSLHPSFFGKNMHEIVVQRLLADTEGTCQGDF-YIISVMDAVDISPGKIV 59

Query:    61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
             PG     + V YRA+V+RPFKG+ +D +V  VN+ G F  +GPL  FI+    P D+ + 
Sbjct:    60 PGNAMAEFTVNYRAVVWRPFKGQTVDGIVDSVNQHGFFIAVGPLRVFITKQMCPPDVIYD 119

Query:   121 PNSNPVCYKSVHGEVVIQEDDEIRLKIVGTRVDASGIFAIGTLMDDYLG 169
              N++P  +       ++      R +I+G R +   ++AIGT+ +D+LG
Sbjct:   120 ANASPPVFTD-KDTWLVDVGTLCRARIIGLRSEVDTMWAIGTVNEDFLG 167


>TAIR|locus:2130060 [details] [associations]
            symbol:NRPE7 species:3702 "Arabidopsis thaliana"
            [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA;ISS] [GO:0000419
            "DNA-directed RNA polymerase V complex" evidence=IPI]
            InterPro:IPR005576 Pfam:PF03876 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0006351 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003899 GO:GO:0000419
            Gene3D:3.30.1490.120 SUPFAM:SSF88798 EMBL:BT030624 IPI:IPI00536833
            RefSeq:NP_193202.2 UniGene:At.49694 ProteinModelPortal:A6QRA1
            STRING:A6QRA1 PaxDb:A6QRA1 PRIDE:A6QRA1 EnsemblPlants:AT4G14660.1
            GeneID:827116 KEGG:ath:AT4G14660 TAIR:At4g14660 eggNOG:NOG264504
            HOGENOM:HOG000241228 InParanoid:A6QRA1 KO:K16253 OMA:KVQLPWN
            PhylomeDB:A6QRA1 ProtClustDB:CLSN2688679 Genevestigator:A6QRA1
            Uniprot:A6QRA1
        Length = 178

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 45/134 (33%), Positives = 78/134 (58%)

Query:    39 TGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMF 98
             T + G+ +AVTT+D IG G I+   G V++PV +  + F+ FKGE++  VV +V K G+F
Sbjct:    43 TKELGYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVF 102

Query:    99 AEIGPL-SCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGTR-VDASG 156
                GP+ + ++S+  +P D ++ P  NP+          IQ +  +R+ ++G + ++   
Sbjct:   103 MRCGPIENVYLSYTKMP-DYKYIPGENPIFMNEKTSR--IQVETTVRVVVIGIKWMEVER 159

Query:   157 IF-AIGTLMDDYLG 169
              F A+ +L  DYLG
Sbjct:   160 EFQALASLEGDYLG 173


>UNIPROTKB|E9PIU7 [details] [associations]
            symbol:POLR2G "DNA-directed RNA polymerase II subunit RPB7"
            species:9606 "Homo sapiens" [GO:0003899 "DNA-directed RNA
            polymerase activity" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
            evidence=IEA] InterPro:IPR005576 GO:GO:0006915 EMBL:AP001160
            GO:GO:0006351 GO:GO:0003899 Gene3D:3.30.1490.120 SUPFAM:SSF88798
            HGNC:HGNC:9194 IPI:IPI00977348 SMR:E9PIU7 Ensembl:ENST00000524819
            Ensembl:ENST00000531944 Uniprot:E9PIU7
        Length = 41

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 36/41 (87%), Positives = 38/41 (92%)

Query:     1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGK 41
             MFYHISLEHEILLHPRYFGP L  TVKQKL++EVEGTCTGK
Sbjct:     1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGK 41


>UNIPROTKB|E9PKH3 [details] [associations]
            symbol:POLR2G "DNA-directed RNA polymerase II subunit RPB7"
            species:9606 "Homo sapiens" [GO:0003899 "DNA-directed RNA
            polymerase activity" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] InterPro:IPR005576 EMBL:AP001160
            GO:GO:0006351 GO:GO:0003899 Gene3D:3.30.1490.120 SUPFAM:SSF88798
            HGNC:HGNC:9194 IPI:IPI00983669 ProteinModelPortal:E9PKH3 SMR:E9PKH3
            Ensembl:ENST00000525455 ArrayExpress:E9PKH3 Bgee:E9PKH3
            Uniprot:E9PKH3
        Length = 64

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 36/41 (87%), Positives = 38/41 (92%)

Query:     1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGK 41
             MFYHISLEHEILLHPRYFGP L  TVKQKL++EVEGTCTGK
Sbjct:     1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGK 41


>UNIPROTKB|H0YEE4 [details] [associations]
            symbol:POLR2G "DNA-directed RNA polymerase II subunit RPB7"
            species:9606 "Homo sapiens" [GO:0003899 "DNA-directed RNA
            polymerase activity" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] InterPro:IPR005576 EMBL:AP001160
            GO:GO:0006351 GO:GO:0003899 Gene3D:3.30.1490.120 HGNC:HGNC:9194
            Ensembl:ENST00000531996 Bgee:H0YEE4 Uniprot:H0YEE4
        Length = 60

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 32/37 (86%), Positives = 34/37 (91%)

Query:     5 ISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGK 41
             ISLEHEILLHPRYFGP L  TVKQKL++EVEGTCTGK
Sbjct:     1 ISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGK 37


>TAIR|locus:2084573 [details] [associations]
            symbol:NRPD7 species:3702 "Arabidopsis thaliana"
            [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA;ISS] [GO:0000418
            "DNA-directed RNA polymerase IV complex" evidence=IPI]
            InterPro:IPR005576 Pfam:PF03876 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0006351 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003899 GO:GO:0000418
            Gene3D:3.30.1490.120 SUPFAM:SSF88798 HOGENOM:HOG000241228 KO:K16253
            ProtClustDB:CLSN2688679 EMBL:AY085637 IPI:IPI00522501
            RefSeq:NP_566719.1 UniGene:At.37797 ProteinModelPortal:Q8LE42
            STRING:Q8LE42 PaxDb:Q8LE42 PRIDE:Q8LE42 EnsemblPlants:AT3G22900.1
            GeneID:821862 KEGG:ath:AT3G22900 TAIR:At3g22900 eggNOG:NOG327805
            InParanoid:Q8LE42 OMA:RIQIGAR PhylomeDB:Q8LE42
            Genevestigator:Q8LE42 Uniprot:Q8LE42
        Length = 174

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 41/134 (30%), Positives = 67/134 (50%)

Query:    39 TGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMF 98
             T   G++I  T +++IG G I+   G + +PV +  I F+ FKGE++  VV +V+K G+F
Sbjct:    42 TKDLGYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVF 101

Query:    99 AEIGPLSC-FISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDDEIRLKIVGT--RVDAS 155
              + GP    ++SH  +P   +F P  NP           IQ    +R  ++ T  R    
Sbjct:   102 LKSGPYEIIYLSHMKMP-GYEFIPGENPFFMNQYMSR--IQIGARVRFVVLDTEWREAEK 158

Query:   156 GIFAIGTLMDDYLG 169
                A+ ++  D LG
Sbjct:   159 DFMALASIDGDNLG 172


>TAIR|locus:2033077 [details] [associations]
            symbol:AT1G06790 species:3702 "Arabidopsis thaliana"
            [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0009062 "fatty acid catabolic
            process" evidence=RCA] InterPro:IPR005576 Pfam:PF03876
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006351
            InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC011001 GO:GO:0003899
            UniGene:At.26438 UniGene:At.48160 eggNOG:COG1095
            Gene3D:3.30.1490.120 SUPFAM:SSF88798 HOGENOM:HOG000157370 KO:K03022
            InterPro:IPR013238 Pfam:PF08292 OMA:NVGLCIA EMBL:AY065288
            EMBL:AY142661 IPI:IPI00527075 PIR:G86202 RefSeq:NP_172164.1
            ProteinModelPortal:Q9M9Y6 SMR:Q9M9Y6 IntAct:Q9M9Y6 STRING:Q9M9Y6
            PaxDb:Q9M9Y6 PRIDE:Q9M9Y6 DNASU:837190 EnsemblPlants:AT1G06790.1
            GeneID:837190 KEGG:ath:AT1G06790 TAIR:At1g06790 InParanoid:Q9M9Y6
            PhylomeDB:Q9M9Y6 ProtClustDB:CLSN2682503 ArrayExpress:Q9M9Y6
            Genevestigator:Q9M9Y6 Uniprot:Q9M9Y6
        Length = 204

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 35/122 (28%), Positives = 53/122 (43%)

Query:     1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
             MFY   LEH + + P      L + +K  L +          G  +++  I S+  G + 
Sbjct:     1 MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query:    61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFC 120
             PG G   Y V  R +VFRPF GEV+ A   + +  G+   +G    F     +P  +   
Sbjct:    61 PGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGLRLTLG----FFDDIYVPAPLMPK 116

Query:   121 PN 122
             PN
Sbjct:   117 PN 118


>CGD|CAL0005692 [details] [associations]
            symbol:orf19.443 species:5476 "Candida albicans" [GO:0005829
            "cytosol" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase
            III complex" evidence=IEA] [GO:0006384 "transcription initiation
            from RNA polymerase III promoter" evidence=IEA] [GO:0042797 "tRNA
            transcription from RNA polymerase III promoter" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            InterPro:IPR004519 InterPro:IPR005576 Pfam:PF03876 CGD:CAL0005692
            GO:GO:0003677 GO:GO:0006351 InterPro:IPR012340 SUPFAM:SSF50249
            GO:GO:0003899 EMBL:AACQ01000078 EMBL:AACQ01000077 eggNOG:COG1095
            Gene3D:3.30.1490.120 SUPFAM:SSF88798 HOGENOM:HOG000157370 KO:K03022
            InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448
            RefSeq:XP_715878.1 RefSeq:XP_715928.1 ProteinModelPortal:Q5A298
            SMR:Q5A298 STRING:Q5A298 GeneID:3642414 GeneID:3642463
            KEGG:cal:CaO19.443 KEGG:cal:CaO19.8073 Uniprot:Q5A298
        Length = 195

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 40/152 (26%), Positives = 66/152 (43%)

Query:     1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
             MF    +   I + P  F   +  ++  +L  +         G VI +  I  I  GL++
Sbjct:     1 MFILSEISDLIRIPPSAFNVPIQHSISDELNKKYANKIIANLGLVITIWDILDIKDGLLK 60

Query:    61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQF- 119
             PG G     V++R+IV++PF+GE+L   VT+    G+   +     F     IP D  F 
Sbjct:    61 PGDGGSYVEVRFRSIVWKPFRGEILTGWVTECTAKGIKVRME----FFDEIWIPKDFLFE 116

Query:   120 -CPNSNPV---CYKSVHGEVVIQEDDEIRLKI 147
              C  S       Y     E+ I  +++IR ++
Sbjct:   117 NCKYSESEQAWIYLLDENELFIDVNEKIRFRV 148


>POMBASE|SPBC2G5.07c [details] [associations]
            symbol:rpc25 "DNA-directed RNA polymerase III complex
            subunit Rpc25" species:4896 "Schizosaccharomyces pombe" [GO:0003677
            "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
            polymerase activity" evidence=IMP] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005666 "DNA-directed RNA polymerase III complex"
            evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006384
            "transcription initiation from RNA polymerase III promoter"
            evidence=IMP] InterPro:IPR004519 InterPro:IPR005576 Pfam:PF03876
            PomBase:SPBC2G5.07c GO:GO:0005829 GO:GO:0003677 EMBL:CU329671
            GenomeReviews:CU329671_GR InterPro:IPR012340 SUPFAM:SSF50249
            GO:GO:0005666 GO:GO:0003899 eggNOG:COG1095 Gene3D:3.30.1490.120
            SUPFAM:SSF88798 GO:GO:0006384 HOGENOM:HOG000157370 KO:K03022
            InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448 OMA:NVGLCIA
            EMBL:DQ156221 PIR:T40164 RefSeq:NP_596068.1 PDB:3AYH PDBsum:3AYH
            ProteinModelPortal:O94285 STRING:O94285 EnsemblFungi:SPBC2G5.07c.1
            GeneID:2540510 KEGG:spo:SPBC2G5.07c OrthoDB:EOG4NCQP8
            NextBio:20801637 Uniprot:O94285
        Length = 203

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 33/111 (29%), Positives = 50/111 (45%)

Query:    11 ILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPV 70
             I +HP  F     E + ++++ +         G  I V     IG G+I+ G G     V
Sbjct:    11 ISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIKYGDGSSYMNV 70

Query:    71 KYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCP 121
              +R I+FRPF+GEV+   +   ++ G+   I     F     IP DM F P
Sbjct:    71 VFRLIIFRPFRGEVMLGKIKSCSEEGIRVTIS----FFDDIFIPKDMLFDP 117


>DICTYBASE|DDB_G0273523 [details] [associations]
            symbol:rpc25-2 "RNA polymerase III subunit"
            species:44689 "Dictyostelium discoideum" [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA;ISS]
            [GO:0006384 "transcription initiation from RNA polymerase III
            promoter" evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase
            III complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR005576 Pfam:PF03876 dictyBase:DDB_G0273523
            dictyBase:DDB_G0273425 GenomeReviews:CM000151_GR InterPro:IPR012340
            SUPFAM:SSF50249 EMBL:AAFI02000010 GO:GO:0005666 GO:GO:0003899
            eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798 GO:GO:0006384
            InterPro:IPR013238 Pfam:PF08292 RefSeq:XP_644608.1
            RefSeq:XP_644642.1 ProteinModelPortal:Q557J3 STRING:Q557J3
            EnsemblProtists:DDB0216296 EnsemblProtists:DDB0304862
            GeneID:8618972 GeneID:8619005 KEGG:ddi:DDB_G0273425
            KEGG:ddi:DDB_G0273523 OMA:WEWNENQ ProtClustDB:CLSZ2729227
            Uniprot:Q557J3
        Length = 252

 Score = 127 (49.8 bits), Expect = 6.1e-08, P = 6.1e-08
 Identities = 30/148 (20%), Positives = 70/148 (47%)

Query:     1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
             MF+ I++E ++ + P  F  ++ +T++ ++  +         G  +A+  I   G   + 
Sbjct:     1 MFHLITIEDKVRIAPSQFNNEV-QTIEDEIEKKYTSKVVLNAGLFVALYDILGTGDSYVH 59

Query:    61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQF 119
              G G     V++R +VF+PFKGEVL+ V+ + ++  +   +G     +++   +P    +
Sbjct:    60 SGDGGAHLMVRFRMVVFKPFKGEVLEGVIKKSSRQSIQISLGFFHEIYLNPIELPNPSNY 119

Query:   120 CPNSNPVCYKSVHGEVVIQEDDEIRLKI 147
                     ++    ++  ++   +R KI
Sbjct:   120 NQEEGLWYWEWNENQLFFEDGGRVRFKI 147


>DICTYBASE|DDB_G0273425 [details] [associations]
            symbol:rpc25-1 "RNA polymerase III subunit"
            species:44689 "Dictyostelium discoideum" [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA;ISS]
            [GO:0006384 "transcription initiation from RNA polymerase III
            promoter" evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase
            III complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR005576 Pfam:PF03876 dictyBase:DDB_G0273523
            dictyBase:DDB_G0273425 GenomeReviews:CM000151_GR InterPro:IPR012340
            SUPFAM:SSF50249 EMBL:AAFI02000010 GO:GO:0005666 GO:GO:0003899
            eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798 GO:GO:0006384
            InterPro:IPR013238 Pfam:PF08292 RefSeq:XP_644608.1
            RefSeq:XP_644642.1 ProteinModelPortal:Q557J3 STRING:Q557J3
            EnsemblProtists:DDB0216296 EnsemblProtists:DDB0304862
            GeneID:8618972 GeneID:8619005 KEGG:ddi:DDB_G0273425
            KEGG:ddi:DDB_G0273523 OMA:WEWNENQ ProtClustDB:CLSZ2729227
            Uniprot:Q557J3
        Length = 252

 Score = 127 (49.8 bits), Expect = 6.1e-08, P = 6.1e-08
 Identities = 30/148 (20%), Positives = 70/148 (47%)

Query:     1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
             MF+ I++E ++ + P  F  ++ +T++ ++  +         G  +A+  I   G   + 
Sbjct:     1 MFHLITIEDKVRIAPSQFNNEV-QTIEDEIEKKYTSKVVLNAGLFVALYDILGTGDSYVH 59

Query:    61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPTDMQF 119
              G G     V++R +VF+PFKGEVL+ V+ + ++  +   +G     +++   +P    +
Sbjct:    60 SGDGGAHLMVRFRMVVFKPFKGEVLEGVIKKSSRQSIQISLGFFHEIYLNPIELPNPSNY 119

Query:   120 CPNSNPVCYKSVHGEVVIQEDDEIRLKI 147
                     ++    ++  ++   +R KI
Sbjct:   120 NQEEGLWYWEWNENQLFFEDGGRVRFKI 147


>WB|WBGene00014111 [details] [associations]
            symbol:rpc-25 species:6239 "Caenorhabditis elegans"
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0040010 "positive regulation of growth rate" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
            genitalia development" evidence=IMP] [GO:0040007 "growth"
            evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
            evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
            [GO:0016477 "cell migration" evidence=IMP] InterPro:IPR005576
            Pfam:PF03876 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
            GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0006351
            GO:GO:0040035 InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967
            SMART:SM00316 GO:GO:0003899 EMBL:Z70783 eggNOG:COG1095
            Gene3D:3.30.1490.120 SUPFAM:SSF88798 HOGENOM:HOG000157370 KO:K03022
            InterPro:IPR013238 Pfam:PF08292 OMA:NVGLCIA
            GeneTree:ENSGT00390000004383 PIR:T28049 RefSeq:NP_505625.1
            ProteinModelPortal:Q23645 SMR:Q23645 STRING:Q23645 PaxDb:Q23645
            EnsemblMetazoa:ZK856.10 GeneID:179418 KEGG:cel:CELE_ZK856.10
            UCSC:ZK856.10 CTD:179418 WormBase:ZK856.10 InParanoid:Q23645
            NextBio:905302 Uniprot:Q23645
        Length = 239

 Score = 120 (47.3 bits), Expect = 2.3e-06, P = 2.3e-06
 Identities = 32/98 (32%), Positives = 48/98 (48%)

Query:     1 MFYHISLEHE-ILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLI 59
             MF  +SL H+ + + P          +K++L   +        G  I V  I+ IG   I
Sbjct:     1 MFI-LSLLHDTVAIQPHQLSSDQQIVIKKRLNERLANKIIPDLGLCICVYDINEIGDSYI 59

Query:    60 QPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGM 97
              PG+G     VK+R IVFRPF  EV++A V   ++ G+
Sbjct:    60 LPGEGDCRARVKFRMIVFRPFVDEVIEAKVIGSSRQGL 97


>UNIPROTKB|F8WDV1 [details] [associations]
            symbol:POLR3H "DNA-directed RNA polymerase III subunit
            RPC8" species:9606 "Homo sapiens" [GO:0003899 "DNA-directed RNA
            polymerase activity" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] InterPro:IPR005576 Pfam:PF03876
            GO:GO:0006351 EMBL:AL023553 GO:GO:0003899 Gene3D:3.30.1490.120
            SUPFAM:SSF88798 HGNC:HGNC:30349 IPI:IPI00604415
            ProteinModelPortal:F8WDV1 SMR:F8WDV1 PRIDE:F8WDV1
            Ensembl:ENST00000431534 ArrayExpress:F8WDV1 Bgee:F8WDV1
            Uniprot:F8WDV1
        Length = 123

 Score = 93 (37.8 bits), Expect = 0.00013, P = 0.00013
 Identities = 23/103 (22%), Positives = 44/103 (42%)

Query:     1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
             MF  + +   + + P  F  +L +++ ++L  ++        G  I +  I  +    + 
Sbjct:     1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60

Query:    61 PGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGP 103
             PG G     V +R +VF PF  E+L   +   +  G+    GP
Sbjct:    61 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHGNSGP 103


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.143   0.434    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      170       170   0.00086  108 3  11 22  0.36    32
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  31
  No. of states in DFA:  565 (60 KB)
  Total size of DFA:  145 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.24u 0.09s 14.33t   Elapsed:  00:00:01
  Total cpu time:  14.24u 0.09s 14.33t   Elapsed:  00:00:01
  Start:  Thu Aug 15 17:09:36 2013   End:  Thu Aug 15 17:09:37 2013

the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with Rpb7 Rpb7 Rpb7	protein from Drosophila melanogaster	4.2e-79
BLAST match view associations BLAST with polr2gl polr2gl polr2gl polymerase (RNA) II (DNA directed) polypeptide G-like	gene_product from Danio rerio	2.1e-75
BLAST match view associations BLAST with POLR2G POLR2G POLR2G DNA-directed RNA polymerase II subunit RPB7	protein from Bos taurus	5.7e-75
BLAST match view associations BLAST with POLR2G POLR2G POLR2G DNA-directed RNA polymerase II subunit RPB7	protein from Homo sapiens	5.7e-75
BLAST match view associations BLAST with LOC100620235 LOC100620235 LOC100620235 Uncharacterized protein	protein from Sus scrofa	5.7e-75
BLAST match view associations BLAST with Polr2g Polr2g Polr2g polymerase (RNA) II (DNA directed) polypeptide G	protein from Mus musculus	5.7e-75
BLAST match view associations BLAST with Polr2g Polr2g Polr2g polymerase (RNA) II (DNA directed) polypeptide G	gene from Rattus norvegicus	5.7e-75
BLAST match view associations BLAST with rpb-7 rpb-7 rpb-7	gene from Caenorhabditis elegans	1.5e-67
BLAST match view associations BLAST with NRPB7 NRPB7 NRPB7 AT5G59180	protein from Arabidopsis thaliana	2.2e-50
BLAST match view associations BLAST with rpb7 rpb7 rpb7 DNA-directed RNA polymerase II subunit 7	gene from Dictyostelium discoideum	2.3e-48
BLAST match view associations BLAST with RPB7 RPB7 RPB7	gene_product from Candida albicans	5.7e-43
BLAST match view associations BLAST with RPB7 RPB7 RPB7 Likely RNA Pol II core complex subunit	protein from Candida albicans SC5314	5.7e-43
BLAST match view associations BLAST with POLR2G POLR2G POLR2G Uncharacterized protein	protein from Canis lupus familiaris	7.3e-43
BLAST match view associations BLAST with RPB7 RPB7 RPB7 RNA polymerase II subunit B16	gene from Saccharomyces cerevisiae	3.2e-33
BLAST match view associations BLAST with PF10_0269 PF10_0269 PF10_0269 DNA-directed RNA polymerase II, putative	gene from Plasmodium falciparum	9.8e-32
BLAST match view associations BLAST with PF10_0269 PF10_0269 PF10_0269 DNA-directed RNA polymerase II, putative	protein from Plasmodium falciparum 3D7	9.8e-32
BLAST match view associations BLAST with MGG_17442 MGG_17442 MGG_17442 Uncharacterized protein	protein from Magnaporthe oryzae 70-15	1.7e-27
BLAST match view associations BLAST with NRPE7 NRPE7 NRPE7 AT4G14660	protein from Arabidopsis thaliana	3.7e-16
BLAST match view associations BLAST with POLR2G POLR2G POLR2G DNA-directed RNA polymerase II subunit RPB7	protein from Homo sapiens	6.0e-16
BLAST match view associations BLAST with POLR2G POLR2G POLR2G DNA-directed RNA polymerase II subunit RPB7	protein from Homo sapiens	6.0e-16
BLAST match view associations BLAST with POLR2G POLR2G POLR2G DNA-directed RNA polymerase II subunit RPB7	protein from Homo sapiens	3.4e-13
BLAST match view associations BLAST with NRPD7 NRPD7 NRPD7 AT3G22900	protein from Arabidopsis thaliana	3.1e-12
BLAST match view associations BLAST with AT1G06790 AT1G06790 AT1G06790	protein from Arabidopsis thaliana	1.4e-09
BLAST match view associations BLAST with orf19.443 orf19.443 orf19.443	gene_product from Candida albicans	1.2e-08
BLAST match view associations BLAST with rpc25-2 rpc25-2 rpc25-2 RNA polymerase III subunit	gene from Dictyostelium discoideum	6.1e-08
BLAST match view associations BLAST with rpc25-1 rpc25-1 rpc25-1 RNA polymerase III subunit	gene from Dictyostelium discoideum	6.1e-08
BLAST match view associations BLAST with rpc-25 rpc-25 rpc-25	gene from Caenorhabditis elegans	2.3e-06
BLAST match view associations BLAST with POLR3H POLR3H POLR3H DNA-directed RNA polymerase III subunit RPC8	protein from Homo sapiens	0.00013