RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13107
(170 letters)
>d2c35b2 d.230.1.1 (B:1-77) N-terminal, heterodimerisation domain
of RBP7 (RpoE) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 99.7 bits (249), Expect = 7e-29
Identities = 67/77 (87%), Positives = 74/77 (96%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
MFYHISLEHEILLHPRYFGP L TVKQKL++EVEGTCTGKYGFVIAVTTID+IGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGQGFVVYPVKYRAIVF 77
PG+GFV+YPVKY+AIVF
Sbjct: 61 PGRGFVLYPVKYKAIVF 77
>d1y14b2 d.230.1.1 (B:1-80) N-terminal, heterodimerisation domain
of RBP7 (RpoE) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 80
Score = 97.9 bits (244), Expect = 4e-28
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTID--SIGAGL 58
MF+ L I LHP +FGP++ + +K KL EVEG+CTGK+G+++ V D I G
Sbjct: 1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGR 60
Query: 59 IQPGQGFVVYPVKYRAIVFR 78
I P G + VKYRA+VF+
Sbjct: 61 ILPTDGSAEFNVKYRAVVFK 80
>d1y14b1 b.40.4.5 (B:81-171) C-terminal domain of RNA polymerase II
subunit RBP7 (RpoE) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 91
Score = 96.8 bits (241), Expect = 2e-27
Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 79 PFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQ 138
PFKGEV+D V ++ G ++GP+ F++ H +P D+ F SNP Y+S VI
Sbjct: 1 PFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSE--DVIT 58
Query: 139 EDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
IR+KI G S I AIG++ +DYLG
Sbjct: 59 IKSRIRVKIEGCISQVSSIHAIGSIKEDYLGA 90
>d2c35b1 b.40.4.5 (B:78-171) C-terminal domain of RNA polymerase II
subunit RBP7 (RpoE) {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 96.1 bits (239), Expect = 3e-27
Identities = 72/93 (77%), Positives = 85/93 (91%)
Query: 78 RPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVI 137
RPFKGEV+DAVVTQVNKVG+F EIGP+SCFIS HSIP++M+F PNSNP CYK++ ++VI
Sbjct: 1 RPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVI 60
Query: 138 QEDDEIRLKIVGTRVDASGIFAIGTLMDDYLGL 170
Q+DDEIRLKIVGTRVD + IFAIG+LMDDYLGL
Sbjct: 61 QQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGL 93
>d1go3e2 d.230.1.1 (E:1-78) N-terminal, heterodimerisation domain
of RBP7 (RpoE) {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 78
Score = 94.3 bits (235), Expect = 1e-26
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 1 MFYHISLEHEILLHPRYFGPQLYETVKQKLYSEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
M+ + + + + P FG L ETVK+ L + EG GFV+++ + IG G +
Sbjct: 1 MYKILEIADVVKVPPEEFGKDLKETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGEGKVV 60
Query: 61 PGQGFVVYPVKYRAIVF 77
G G +PV + +V+
Sbjct: 61 HGDGSAYHPVVFETLVY 77
>d1go3e1 b.40.4.5 (E:79-184) C-terminal domain of RNA polymerase II
subunit RBP7 (RpoE) {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 106
Score = 44.3 bits (104), Expect = 3e-07
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 79 PFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQ 138
P E+++ V V + G F +GPL I H S D + V++
Sbjct: 1 PEMYELIEGEVVDVVEFGSFVRLGPLDGLI-HVSQIMDDYVSYDPKREAIIGKETGKVLE 59
Query: 139 EDDEIRLKIVGTRVDA 154
D +R +IV + A
Sbjct: 60 IGDYVRARIVAISLKA 75
>d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 94
Score = 35.2 bits (81), Expect = 6e-04
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 81 KGEVLDAVVTQVNKVGMFAEIGP-LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQE 139
G VL+ VVT V G F +IG + ++ P V +V + E
Sbjct: 18 PGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIV--KVKVME 75
Query: 140 DDEIRLKI 147
D R ++
Sbjct: 76 VDIPRNRV 83
>d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha,
eIF2alpha, N-terminal domain {Sulfolobus solfataricus
[TaxId: 2287]}
Length = 84
Score = 31.9 bits (72), Expect = 0.009
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 79 PFKGEVLDAVVTQVNKVGMFAEIGP---LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEV 135
P +GE+L A V QV G + + L F+ + + + V V
Sbjct: 9 PSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKV--IV 66
Query: 136 VIQEDDEIRLKI 147
+ D + +
Sbjct: 67 KVIRVDRRKGTV 78
>d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha,
eIF2alpha, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 86
Score = 31.5 bits (71), Expect = 0.013
Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 5/72 (6%)
Query: 79 PFKGEVLDAVVTQVNKVGMFAEIGP---LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEV 135
P +V+ V + ++G + + + I + N ++ V
Sbjct: 11 PEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNE--CV 68
Query: 136 VIQEDDEIRLKI 147
V+ D+ + I
Sbjct: 69 VVIRVDKEKGYI 80
>d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex
RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 83
Score = 31.1 bits (70), Expect = 0.015
Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 77 FRPFKGEVLDAVVTQVNKVGMFAEIGP-LSCFISHHSIPTDMQFCPNSNPVCYKSVHGEV 135
+ P G+V+ ++ +V G +I F+ P + +
Sbjct: 1 YTPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAK 60
Query: 136 VIQEDDEIRLK 146
V+ D ++++
Sbjct: 61 VLNIDPKMKVT 71
>d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex
RNA-binding protein 1, ECR1 {Sulfolobus solfataricus
[TaxId: 2287]}
Length = 87
Score = 31.1 bits (70), Expect = 0.016
Identities = 10/76 (13%), Positives = 20/76 (26%), Gaps = 5/76 (6%)
Query: 77 FRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVV 136
+ P +++ +V V G +I S + Y V V+
Sbjct: 3 YYPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVI 62
Query: 137 -----IQEDDEIRLKI 147
+ L +
Sbjct: 63 ARIENFDRSIDPVLSV 78
>d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex
RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId:
56636]}
Length = 88
Score = 27.9 bits (62), Expect = 0.18
Identities = 9/78 (11%), Positives = 22/78 (28%), Gaps = 6/78 (7%)
Query: 76 VFRPFKGEVLDAVVTQVNKVGMFAEIGP-LSCFISHHSIPTDMQFCPNSNPVCYKSVHGE 134
++ P G+V+ ++ V + F +I +S + V
Sbjct: 2 IYVPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDY 61
Query: 135 VV-----IQEDDEIRLKI 147
+ + L +
Sbjct: 62 IKAKVVAFDKTRSPLLTV 79
>d1ff4a_ g.7.1.1 (A:) Muscarinic toxin {Green mamba (Dendroaspis
angusticeps) [TaxId: 8618]}
Length = 65
Score = 25.9 bits (57), Expect = 0.72
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 104 LSCFISHHSIPTDMQFCPNSNPVCYK 129
L+C + + CP VC+K
Sbjct: 1 LTCVTTKSIGGVTTEDCPAGQNVCFK 26
>d1mr6a_ g.7.1.1 (A:) Bungarotoxin {Many-banded krait (Bungarus
multicinctus), gamma-bungarotoxin [TaxId: 8616]}
Length = 68
Score = 25.5 bits (56), Expect = 1.2
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 104 LSCFISHHSIPTDMQFCPNSNPVCYK 129
+ C + + CP+ +C K
Sbjct: 1 MQCKTCSFYTCPNSETCPDGKNICVK 26
>d1v6pa_ g.7.1.1 (A:) Cobrotoxin II (ct2) {Taiwan cobra (Naja naja
atra) [TaxId: 8656]}
Length = 62
Score = 25.1 bits (55), Expect = 1.3
Identities = 7/26 (26%), Positives = 7/26 (26%)
Query: 104 LSCFISHHSIPTDMQFCPNSNPVCYK 129
L C S C CYK
Sbjct: 1 LECHNQQSSQTPTTTGCSGGETNCYK 26
>d1zpsa1 b.168.1.1 (A:8-131) Phosphoribosyl-AMP cyclohydrolase HisI
{Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 124
Score = 25.7 bits (56), Expect = 2.0
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 86 DAVVTQVNKVGMFAEIGPLSCFISHHSIPTD 116
DAVV +V + G G SCF + SI D
Sbjct: 82 DAVVLKVEQEGGACHTGYRSCF--YRSIDGD 110
>d1ov2a_ a.13.1.1 (A:) alpha-2-Macroglobulin receptor associated
protein (RAP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 25.1 bits (55), Expect = 2.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 125 PVCYKSVHGEVVIQEDDEIRLK 146
PV +H ++ IQE DE+ K
Sbjct: 23 PVRLAELHADLKIQERDELAWK 44
>d3ebxa_ g.7.1.1 (A:) Erabutoxin B (also neurotoxin B) {Sea snake
(Laticauda semifasciata) [TaxId: 8631]}
Length = 62
Score = 24.4 bits (53), Expect = 2.7
Identities = 7/24 (29%), Positives = 8/24 (33%)
Query: 106 CFISHHSIPTDMQFCPNSNPVCYK 129
CF S P + C CY
Sbjct: 3 CFNHQSSQPQTTKTCSPGESSCYH 26
>d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide
phosphorylase, PNPase {Escherichia coli [TaxId: 562]}
Length = 76
Score = 24.3 bits (53), Expect = 3.0
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 11/68 (16%)
Query: 82 GEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPTDMQFCPNSNPVCYKSVHGEVVIQEDD 141
G V VT++ G F IG + H + + +Q
Sbjct: 6 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHI---SQIADKRVEKV--------TDYLQMGQ 54
Query: 142 EIRLKIVG 149
E+ +K++
Sbjct: 55 EVPVKVLE 62
>d1jgka_ g.7.1.1 (A:) Candoxin {Malayan krait (Bungarus candidus)
[TaxId: 92438]}
Length = 66
Score = 23.6 bits (51), Expect = 4.7
Identities = 5/28 (17%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 104 LSCFISHH--SIPTDMQFCPNSNPVCYK 129
+ C I + +++ C + C+K
Sbjct: 1 MKCKICNFDTCRAGELKVCASGEKYCFK 28
>d1hh2p1 b.40.4.5 (P:127-198) S1 domain of NusA {Thermotoga maritima
[TaxId: 2336]}
Length = 72
Score = 23.8 bits (52), Expect = 4.7
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 77 FRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISH-HSIPTDM 117
+ KG V A V +V IG L + IP +
Sbjct: 4 YSELKGTVTTAEVIRVMGEWADIRIGKLETRLPKKEWIPGEE 45
>d2h8ua1 g.7.1.1 (A:1-65) Bucain {Malaysian krait (Bungarus
candidus) [TaxId: 92438]}
Length = 65
Score = 23.6 bits (51), Expect = 5.6
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 106 CFISHHSIPTDMQFCPNSNPVCYK 129
C I + + CP+ +C K
Sbjct: 3 CLIKYSQANESSKTCPSGQLLCLK 26
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.143 0.434
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 658,990
Number of extensions: 29444
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 27
Length of query: 170
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,322,926
Effective search space: 120386266
Effective search space used: 120386266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.2 bits)