BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13110
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F3M|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|B Chain B, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
Length = 80
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 63/77 (81%), Gaps = 1/77 (1%)
Query: 104 EKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQKKNPQAVLDVLNW 163
E+P IS P++FEHT+HVGFDA TGEFTGMPE WARLL +SNI+K EQKKNPQAVLDVL +
Sbjct: 2 ERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKSEQKKNPQAVLDVLEF 61
Query: 164 FDNSTKEAKGSKYMTTT 180
+ NS K + KYM+ T
Sbjct: 62 Y-NSKKTSNSQKYMSFT 77
>pdb|1E0A|B Chain B, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 46
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%)
Query: 108 ISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQK 151
IS P++FEHT+HVGFDA TGEFTGMPE WARLL +SNI+K EQK
Sbjct: 3 ISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKSEQK 46
>pdb|1EES|B Chain B, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 46
Score = 70.1 bits (170), Expect = 7e-13, Method: Composition-based stats.
Identities = 31/43 (72%), Positives = 38/43 (88%)
Query: 104 EKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNIS 146
E+P IS P++FEHT+HVGFDA TGEFTG+PE WARLL +SNI+
Sbjct: 4 ERPEISLPSDFEHTIHVGFDAVTGEFTGIPEQWARLLQTSNIT 46
>pdb|2QME|I Chain I, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 36
Score = 62.8 bits (151), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 108 ISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMS 142
IS P++FEHT+HVGFDA TGEFTGMPE WARLL +
Sbjct: 2 ISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQT 36
>pdb|4FIE|A Chain A, Full-Length Human Pak4
pdb|4FIE|B Chain B, Full-Length Human Pak4
Length = 423
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 108 ISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSS 143
IS P+NFEH VH GFD H +FTG+P W L+ S
Sbjct: 8 ISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLIEES 43
>pdb|2OV2|I Chain I, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|J Chain J, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|K Chain K, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|L Chain L, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|M Chain M, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|N Chain N, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|O Chain O, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|P Chain P, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
Length = 35
Score = 47.4 bits (111), Expect = 4e-06, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 108 ISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLL 140
IS P+NFEH VH GFD H +FTG+P W L+
Sbjct: 2 ISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLI 34
>pdb|2ODB|B Chain B, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 35
Score = 40.8 bits (94), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 108 ISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLL 140
IS P NF+H VH FD G+F G+P W +L
Sbjct: 2 ISAPQNFQHRVHTSFDPKEGKFVGLPPQWQNIL 34
>pdb|3MEP|A Chain A, Crystal Structure Of Eca2234 Protein From Erwinia
Carotovora, Northeast Structural Genomics Consortium
Target Ewr44
pdb|3MEP|B Chain B, Crystal Structure Of Eca2234 Protein From Erwinia
Carotovora, Northeast Structural Genomics Consortium
Target Ewr44
pdb|3MEP|C Chain C, Crystal Structure Of Eca2234 Protein From Erwinia
Carotovora, Northeast Structural Genomics Consortium
Target Ewr44
Length = 198
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 1 MSVDISALYHQRALWCGGTTKAIMS---DEEDKPPAPPVRLTSNNS 43
+ D SALY Q ++ GGT A + + D P+ +T+NNS
Sbjct: 60 VKADFSALYDQAGIFIGGTETAWIKAGIEFNDGQPSIGCVVTNNNS 105
>pdb|3NZQ|A Chain A, Crystal Structure Of Biosynthetic Arginine Decarboxylase
Adc (Spea) From Escherichia Coli, Northeast Structural
Genomics Consortium Target Er600
pdb|3NZQ|B Chain B, Crystal Structure Of Biosynthetic Arginine Decarboxylase
Adc (Spea) From Escherichia Coli, Northeast Structural
Genomics Consortium Target Er600
Length = 666
Score = 27.3 bits (59), Expect = 5.4, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 116 HTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQKKNPQ 155
H +H+G+ +G F+ AWA L S +++++ +PQ
Sbjct: 429 HDIHIGYS--SGIFSLQERAWAEQLYLSMCHEVQKQLDPQ 466
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.128 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,270,566
Number of Sequences: 62578
Number of extensions: 132810
Number of successful extensions: 283
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 276
Number of HSP's gapped (non-prelim): 10
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)