Query psy13110
Match_columns 183
No_of_seqs 147 out of 334
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 19:52:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13110.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13110hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f3m_A Serine/threonine-protei 100.0 2E-29 6.7E-34 184.3 7.2 77 104-181 2-78 (80)
2 2lnh_A N-WAsp, neural wiskott- 99.8 1E-21 3.5E-26 138.9 2.6 55 112-167 2-57 (65)
3 1cee_B Wiskott-aldrich syndrom 99.8 2.3E-21 7.7E-26 134.2 3.3 51 103-154 4-56 (59)
4 1ej5_A WAsp, wiskott-aldrich s 99.7 7.5E-19 2.5E-23 134.6 4.6 54 112-166 1-58 (107)
5 2odb_B Serine/threonine-protei 99.7 1.1E-17 3.7E-22 105.0 3.4 34 107-140 1-34 (35)
6 2qme_I CRIB domain of the seri 99.7 7.6E-18 2.6E-22 106.4 1.5 35 107-141 1-35 (36)
7 2ov2_I Serine/threonine-protei 99.7 5E-18 1.7E-22 106.5 -0.2 34 107-140 1-34 (35)
8 4fie_A Serine/threonine-protei 99.6 6E-18 2E-22 152.4 -3.2 57 104-167 4-60 (423)
9 2jpw_A Troponin I, cardiac mus 59.1 4.6 0.00016 24.5 1.7 14 28-41 11-24 (32)
10 1b0n_B Protein (SINI protein); 48.9 15 0.00052 24.7 3.1 24 128-151 7-33 (57)
11 1qzm_A ATP-dependent protease 29.8 27 0.00093 25.4 2.1 31 136-166 17-47 (94)
12 2yj1_B Alpha-beta-PUMA BH3 fol 29.7 7.5 0.00025 22.7 -0.8 12 2-13 14-25 (26)
13 2o71_A Death domain-containing 29.3 42 0.0014 24.9 3.1 38 131-168 33-78 (115)
14 2of5_A Death domain-containing 29.1 34 0.0012 25.4 2.6 38 131-168 33-78 (114)
15 1ich_A TNF-1, tumor necrosis f 28.3 34 0.0012 25.8 2.5 37 130-166 21-66 (112)
16 3ezq_B Protein FADD; apoptosis 27.7 51 0.0017 24.7 3.4 38 131-168 15-60 (122)
17 2vof_B BCL-2-binding component 27.6 14 0.00047 21.6 0.1 11 2-12 16-26 (26)
18 1fad_A Protein (FADD protein); 26.9 69 0.0023 22.3 3.8 38 131-168 23-68 (99)
19 2hx5_A Hypothetical protein; t 26.1 65 0.0022 22.9 3.6 28 115-142 116-143 (152)
20 2of5_H Leucine-rich repeat and 26.0 65 0.0022 23.6 3.6 38 131-168 22-67 (118)
21 3r87_A Putative uncharacterize 24.3 59 0.002 22.7 3.1 26 115-141 108-133 (135)
22 2pzh_A Hypothetical protein HP 23.7 65 0.0022 22.1 3.2 27 115-141 107-133 (135)
23 2o5u_A Thioesterase; putative 21.4 91 0.0031 22.0 3.6 28 115-142 115-142 (148)
24 1whz_A Hypothetical protein; a 21.1 62 0.0021 21.2 2.5 19 134-152 51-69 (70)
No 1
>1f3m_A Serine/threonine-protein kinase PAK-alpha; kinase domain, autoinhibitory fragment, homodimer, transferase; 2.30A {Homo sapiens} SCOP: j.66.1.1 PDB: 1e0a_B* 1ees_B
Probab=99.96 E-value=2e-29 Score=184.33 Aligned_cols=77 Identities=65% Similarity=1.056 Sum_probs=65.5
Q ss_pred CCCccCCCCCCeeeeeeeeeCCCcccccCcHHHHHHHHHcCCCHHHHhhChHHHHHHHHhhcccccccCCCccccccc
Q psy13110 104 EKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQKKNPQAVLDVLNWFDNSTKEAKGSKYMTTTR 181 (183)
Q Consensus 104 ~k~~IS~PtNF~H~~HVg~D~~TGeftGLP~eW~~lL~~sGISk~E~k~NpqaVldVl~Fy~~~~~~~~~~K~m~~~~ 181 (183)
++++||.|+||+|++|||||+.||+|+|||++|++||.++|||++|+++||++|+|||+||+.... ...+|||++++
T Consensus 2 ~~~~Is~Ptnf~H~~HVg~D~~tG~~~GlP~eW~~ll~~sGIs~~e~~~np~~v~dvl~f~~~~~~-~~~~k~~~~~~ 78 (80)
T 1f3m_A 2 ERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKSEQKKNPQAVLDVLEFYNSKKT-SNSQKYMSFTD 78 (80)
T ss_dssp -------CCSSEEEEEEEEETTTTEEESCCHHHHHHHHTSCCCHHHHHHCHHHHHHHHHHHHHHHT-CCCCCCCEECC
T ss_pred CCCccCCCCCCCCeeecccCCCCCccCCCCHHHHHHHHHcCCCHHHHHHCHHHHHHHHHHhccccc-cCccccccCCC
Confidence 458899999999999999999999999999999999999999999999999999999999987664 34689999875
No 2
>2lnh_A N-WAsp, neural wiskott-aldrich syndrome protein; protein complex, signaling protein-protein binding complex; NMR {Homo sapiens}
Probab=99.83 E-value=1e-21 Score=138.88 Aligned_cols=55 Identities=24% Similarity=0.495 Sum_probs=51.4
Q ss_pred CCCeeeeeeeeeCCCc-ccccCcHHHHHHHHHcCCCHHHHhhChHHHHHHHHhhccc
Q psy13110 112 TNFEHTVHVGFDAHTG-EFTGMPEAWARLLMSSNISKLEQKKNPQAVLDVLNWFDNS 167 (183)
Q Consensus 112 tNF~H~~HVg~D~~TG-eftGLP~eW~~lL~~sGISk~E~k~NpqaVldVl~Fy~~~ 167 (183)
|||+|++|||||++|| +|+|||++|++||++||||++|++ ||+++.+|++||++.
T Consensus 2 tnF~Hv~HVG~D~~tGf~~~glp~eW~~ll~~sGIs~~~~k-~~et~~~I~~F~~~~ 57 (65)
T 2lnh_A 2 SNFQHIGHVGWDPNTGFDLNNLDPELKNLFDMCGISEAQLK-DRETSKVIYDFIEKT 57 (65)
T ss_dssp CCCSSCCSCCEETTTEECGGGCCTTHHHHHHHHTCCHHHHT-CTTTHHHHHHHHHHH
T ss_pred CCCEeeeeeeeCCCCCcCCcCCCHHHHHHHHHcCCCHHHHH-CHHHHHHHHHHHHHc
Confidence 7999999999999999 999999999999999999998884 999999999999764
No 3
>1cee_B Wiskott-aldrich syndrome protein WAsp; CDC42 actin regulator GTPase and the GTPase binding domain of ITS effector WAsp; HET: GCP; NMR {Homo sapiens}
Probab=99.82 E-value=2.3e-21 Score=134.18 Aligned_cols=51 Identities=27% Similarity=0.517 Sum_probs=48.2
Q ss_pred CCCCccCCCCCCeeeeeeeeeCCCcccc--cCcHHHHHHHHHcCCCHHHHhhCh
Q psy13110 103 AEKPVISNPTNFEHTVHVGFDAHTGEFT--GMPEAWARLLMSSNISKLEQKKNP 154 (183)
Q Consensus 103 ~~k~~IS~PtNF~H~~HVg~D~~TGeft--GLP~eW~~lL~~sGISk~E~k~Np 154 (183)
..+++||.|+||+|++|||||+++| |+ |||++|++||+.+|||++|+++|+
T Consensus 4 ~~k~~Is~Ptnf~Hv~HvG~d~~~g-f~~~g~pp~W~~ll~~sGIt~~e~k~n~ 56 (59)
T 1cee_B 4 ISKADIGAPSGFKHVSHVGWDPQNG-FDVNNLDPDLRSLFSRAGISEAQLTDAE 56 (59)
T ss_dssp CCTTTSCCCCCCEEEEEECCCTTTC-CCCSSCCHHHHHHHTTTTSCSSCCCSSC
T ss_pred CCCCcccCCCCCCCcceeccCCCCC-cccCCCCHHHHHHHHHcCCCHHHHhhcc
Confidence 3568999999999999999999999 77 999999999999999999999987
No 4
>1ej5_A WAsp, wiskott-aldrich syndrome protein; alpha helix, beta-hairpin turn, blood clotting; NMR {Homo sapiens} SCOP: a.68.1.1 PDB: 1t84_A* 2k42_A
Probab=99.74 E-value=7.5e-19 Score=134.65 Aligned_cols=54 Identities=22% Similarity=0.444 Sum_probs=51.6
Q ss_pred CCCeeeeeeeeeCCCcccc--cCcHHHHHHHHHcCCCHHHHhhCh--HHHHHHHHhhcc
Q psy13110 112 TNFEHTVHVGFDAHTGEFT--GMPEAWARLLMSSNISKLEQKKNP--QAVLDVLNWFDN 166 (183)
Q Consensus 112 tNF~H~~HVg~D~~TGeft--GLP~eW~~lL~~sGISk~E~k~Np--qaVldVl~Fy~~ 166 (183)
+||+|++|||||++|| |+ |||++|++||.++|||++|+++|+ ++|+|+|++.+.
T Consensus 1 tnF~Hv~HVG~D~~tG-F~~~glppeWk~LL~~aGITe~elkdn~t~~fI~dfie~~~g 58 (107)
T 1ej5_A 1 SGFKHVSHVGWDPQNG-FDVNNLDPDLRSLFSRAGISEAQLTDAETSKLIYDFIEDQGG 58 (107)
T ss_dssp CCCCCCCCCCCBTTTB-CCTTTCCHHHHHHHHHTTCCHHHHSCHHHHHHHHHHHHHTTH
T ss_pred CCCCcceecccCCCCC-cCCCCCCHHHHHHHHHcCCCHHHHHcCHHHHHHHHHHHHccc
Confidence 6999999999999999 87 999999999999999999999999 999999999874
No 5
>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens}
Probab=99.69 E-value=1.1e-17 Score=105.03 Aligned_cols=34 Identities=47% Similarity=1.023 Sum_probs=33.1
Q ss_pred ccCCCCCCeeeeeeeeeCCCcccccCcHHHHHHH
Q psy13110 107 VISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLL 140 (183)
Q Consensus 107 ~IS~PtNF~H~~HVg~D~~TGeftGLP~eW~~lL 140 (183)
+||.|+||+|++|||||++||+|+|||+||+++|
T Consensus 1 ~Is~Ptnf~H~~Hvg~d~~tG~f~Glp~eW~~ll 34 (35)
T 2odb_B 1 EISAPQNFQHRVHTSFDPKEGKFVGLPPQWQNIL 34 (35)
T ss_dssp CBCCCEEEEEEEEEEEETTTTEEESCCHHHHHHH
T ss_pred CCcCCCCCcCeeeeeECCCCCcccCCCHHHHHHh
Confidence 5999999999999999999999999999999998
No 6
>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3; HET: GCP; 1.75A {Homo sapiens}
Probab=99.67 E-value=7.6e-18 Score=106.38 Aligned_cols=35 Identities=77% Similarity=1.287 Sum_probs=23.3
Q ss_pred ccCCCCCCeeeeeeeeeCCCcccccCcHHHHHHHH
Q psy13110 107 VISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLM 141 (183)
Q Consensus 107 ~IS~PtNF~H~~HVg~D~~TGeftGLP~eW~~lL~ 141 (183)
+||.|+||+|++|||||++||.|+|||++|++||+
T Consensus 1 ~Is~Ptnf~H~~Hvg~d~~tG~~~glp~~W~~ll~ 35 (36)
T 2qme_I 1 EISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQ 35 (36)
T ss_dssp CBCCCEEEEEEEEECCBTTTTBCC-----------
T ss_pred CCcCCCCCCCeeEcccCCCCCcccCCCHHHHHHHh
Confidence 59999999999999999999999999999999995
No 7
>2ov2_I Serine/threonine-protein kinase PAK 4; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3, signalling protein; HET: GCP; 2.10A {Homo sapiens}
Probab=99.66 E-value=5e-18 Score=106.53 Aligned_cols=34 Identities=56% Similarity=1.118 Sum_probs=32.9
Q ss_pred ccCCCCCCeeeeeeeeeCCCcccccCcHHHHHHH
Q psy13110 107 VISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLL 140 (183)
Q Consensus 107 ~IS~PtNF~H~~HVg~D~~TGeftGLP~eW~~lL 140 (183)
+||.|+||+|++|||||++||+|+|||++|++||
T Consensus 1 ~IS~Ptnf~H~~Hvg~d~~tg~~~Glp~eW~~ll 34 (35)
T 2ov2_I 1 EISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLI 34 (35)
T ss_dssp CBCCCEEEEEEEEEEEETTTTEEESCCGGGTTTC
T ss_pred CCcCCCCCcCeeeeeeCCCCCcccCCCHHHHHHh
Confidence 5999999999999999999999999999999987
No 8
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=99.63 E-value=6e-18 Score=152.45 Aligned_cols=57 Identities=39% Similarity=0.746 Sum_probs=6.9
Q ss_pred CCCccCCCCCCeeeeeeeeeCCCcccccCcHHHHHHHHHcCCCHHHHhhChHHHHHHHHhhccc
Q psy13110 104 EKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQKKNPQAVLDVLNWFDNS 167 (183)
Q Consensus 104 ~k~~IS~PtNF~H~~HVg~D~~TGeftGLP~eW~~lL~~sGISk~E~k~NpqaVldVl~Fy~~~ 167 (183)
++++||.|+||+|++|||||++||+|+|||+||++||+ ++.+|||+|+|++.|+...
T Consensus 4 ~~~~is~p~n~~h~~hvg~d~~tg~f~glP~~W~~ll~-------~~~~~Pq~v~d~~~~~~~~ 60 (423)
T 4fie_A 4 KRVEISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLIE-------ESARRPKPLVDPACITSIQ 60 (423)
T ss_dssp -------------------------------------------------CCCCEEC--------
T ss_pred CCCcccCCCCCCceeecCccCCCCCcccCCHHHHHHHH-------HhccCCccccChhhcCCCC
Confidence 56889999999999999999999999999999999995 4568999999999998643
No 9
>2jpw_A Troponin I, cardiac muscle; poly (L-proline) II helix, contractIle protein; HET: SEP; NMR {Synthetic}
Probab=59.11 E-value=4.6 Score=24.55 Aligned_cols=14 Identities=43% Similarity=0.698 Sum_probs=10.9
Q ss_pred CCCCCCCCcccccC
Q psy13110 28 EDKPPAPPVRLTSN 41 (183)
Q Consensus 28 edkPPaPPvR~tS~ 41 (183)
+.+|-+||+|.-|+
T Consensus 11 ~~~PaP~p~RRrSS 24 (32)
T 2jpw_A 11 EPQPAPAPVRRRSS 24 (32)
T ss_dssp CCCCCCCCCCCTTH
T ss_pred CCCCCCcccccccc
Confidence 67888889997663
No 10
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=48.90 E-value=15 Score=24.70 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=18.9
Q ss_pred ccccCcHHHHHHHH---HcCCCHHHHh
Q psy13110 128 EFTGMPEAWARLLM---SSNISKLEQK 151 (183)
Q Consensus 128 eftGLP~eW~~lL~---~sGISk~E~k 151 (183)
+..-++.+|..|+. ..|+|.+|++
T Consensus 7 ~~~~~d~ewl~LI~~Ak~lGlsleEIr 33 (57)
T 1b0n_B 7 EHFELDQEWVELMVEAKEANISPEEIR 33 (57)
T ss_dssp --CCCCHHHHHHHHHHHHTTCCHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 35568999999987 5799999987
No 11
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=29.84 E-value=27 Score=25.37 Aligned_cols=31 Identities=10% Similarity=0.322 Sum_probs=26.7
Q ss_pred HHHHHHHcCCCHHHHhhChHHHHHHHHhhcc
Q psy13110 136 WARLLMSSNISKLEQKKNPQAVLDVLNWFDN 166 (183)
Q Consensus 136 W~~lL~~sGISk~E~k~NpqaVldVl~Fy~~ 166 (183)
|-+.|+.+|++..++.=..+|+..+|..|..
T Consensus 17 iPkql~~~GL~~~~~~i~d~al~~iI~~YTR 47 (94)
T 1qzm_A 17 LPKQIERNALKKGELTVDDSAIIGIIRYYTR 47 (94)
T ss_dssp HHHHHHHTTCCTTTEEECHHHHHHHHHHHCC
T ss_pred cHHHHHHhCCChhhceECHHHHHHHHHHhcc
Confidence 3466889999999998899999999999964
No 12
>2yj1_B Alpha-beta-PUMA BH3 foldamer; apoptosis, membrane protein, BH3 domain, autophagy; HET: HT7 B3E B3Q HR7; 2.24A {Synthetic construct}
Probab=29.69 E-value=7.5 Score=22.68 Aligned_cols=12 Identities=8% Similarity=0.210 Sum_probs=7.6
Q ss_pred ccchhhhhhhhh
Q psy13110 2 SVDISALYHQRA 13 (183)
Q Consensus 2 ~~~~~~~~~~~~ 13 (183)
.-|++|+|-||.
T Consensus 14 ~~DL~A~~~QR~ 25 (26)
T 2yj1_B 14 ADXLNXQYEXXX 25 (26)
T ss_dssp HHHHHHHHC---
T ss_pred hHHhcCCCCccc
Confidence 358999999985
No 13
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=29.32 E-value=42 Score=24.88 Aligned_cols=38 Identities=13% Similarity=0.383 Sum_probs=30.0
Q ss_pred cCcHHHHHHHHHcCCCHHHHhh----Ch----HHHHHHHHhhcccc
Q psy13110 131 GMPEAWARLLMSSNISKLEQKK----NP----QAVLDVLNWFDNST 168 (183)
Q Consensus 131 GLP~eW~~lL~~sGISk~E~k~----Np----qaVldVl~Fy~~~~ 168 (183)
.|..+|..|-...|+++.+|.. || +.++++|..+.+..
T Consensus 33 ~LG~~Wk~LAR~LGlse~dId~I~~~~p~dl~eq~~qmL~~W~~r~ 78 (115)
T 2o71_A 33 RLGPEWEPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRF 78 (115)
T ss_dssp HCCTTHHHHHHHTTCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 4668999999999999999874 66 67778887765543
No 14
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=29.14 E-value=34 Score=25.35 Aligned_cols=38 Identities=13% Similarity=0.383 Sum_probs=30.0
Q ss_pred cCcHHHHHHHHHcCCCHHHHhh----Ch----HHHHHHHHhhcccc
Q psy13110 131 GMPEAWARLLMSSNISKLEQKK----NP----QAVLDVLNWFDNST 168 (183)
Q Consensus 131 GLP~eW~~lL~~sGISk~E~k~----Np----qaVldVl~Fy~~~~ 168 (183)
.|..+|..|-...|+++.+|.. || +.++++|..+.+..
T Consensus 33 ~lG~~Wk~LAR~LGlse~dId~I~~~~p~~l~eq~~qmL~~W~~r~ 78 (114)
T 2of5_A 33 RLGPEWEPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRF 78 (114)
T ss_dssp TCCSTHHHHHHTTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 4668999999999999999874 66 67778887665543
No 15
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=28.30 E-value=34 Score=25.75 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=27.8
Q ss_pred ccCc-HHHHHHHHHcCCCHHHHhh----Ch----HHHHHHHHhhcc
Q psy13110 130 TGMP-EAWARLLMSSNISKLEQKK----NP----QAVLDVLNWFDN 166 (183)
Q Consensus 130 tGLP-~eW~~lL~~sGISk~E~k~----Np----qaVldVl~Fy~~ 166 (183)
..+| .+|.++....|+|+.+|.. || +.+++.|.-...
T Consensus 21 d~v~~~~WK~~aRkLGLse~~Id~Ie~~~~r~l~Eq~yqmLr~W~~ 66 (112)
T 1ich_A 21 ENVPPLRWKEFVKRLGLSDHEIDRLELQNGRCLREAQYSMLATWRR 66 (112)
T ss_dssp HHSCSTTHHHHHHHHTCCHHHHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHcCCCHHHHHHHHHHCcCChHHHHHHHHHHHHH
Confidence 3566 7999999999999988873 54 667777755433
No 16
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=27.66 E-value=51 Score=24.68 Aligned_cols=38 Identities=21% Similarity=0.405 Sum_probs=29.5
Q ss_pred cCcHHHHHHHHHcCCCHHHHhh----Ch----HHHHHHHHhhcccc
Q psy13110 131 GMPEAWARLLMSSNISKLEQKK----NP----QAVLDVLNWFDNST 168 (183)
Q Consensus 131 GLP~eW~~lL~~sGISk~E~k~----Np----qaVldVl~Fy~~~~ 168 (183)
.|+.+|..|....|++..+|.. || +.++++|..+.+..
T Consensus 15 ~lG~~Wk~LAR~LGlse~dId~Ie~~~p~dl~eq~~~mL~~W~~r~ 60 (122)
T 3ezq_B 15 NVGKDWRRLARQLKVSDTKIDSIEDRYPRNLTERVRESLRIWKNTE 60 (122)
T ss_dssp TCCTTHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHC
T ss_pred hhhhhHHHHHHHhCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHhh
Confidence 5678999999999999988873 54 56788887665443
No 17
>2vof_B BCL-2-binding component 3; BH3, apoptosis, Pro-surviVal, mitochondrion, protein- complex; 1.8A {Mus musculus} PDB: 2roc_B
Probab=27.59 E-value=14 Score=21.57 Aligned_cols=11 Identities=36% Similarity=0.661 Sum_probs=7.4
Q ss_pred ccchhhhhhhh
Q psy13110 2 SVDISALYHQR 12 (183)
Q Consensus 2 ~~~~~~~~~~~ 12 (183)
.-|++|+|-||
T Consensus 16 a~DLnA~y~qR 26 (26)
T 2vof_B 16 ADDLNAQYERR 26 (26)
T ss_dssp HHHHHHHTC--
T ss_pred chhhcccccCC
Confidence 34899999997
No 18
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=26.93 E-value=69 Score=22.27 Aligned_cols=38 Identities=21% Similarity=0.398 Sum_probs=29.7
Q ss_pred cCcHHHHHHHHHcCCCHHHHhh----Ch----HHHHHHHHhhcccc
Q psy13110 131 GMPEAWARLLMSSNISKLEQKK----NP----QAVLDVLNWFDNST 168 (183)
Q Consensus 131 GLP~eW~~lL~~sGISk~E~k~----Np----qaVldVl~Fy~~~~ 168 (183)
.|..+|..|-...|++..++.. || +.++++|.......
T Consensus 23 ~lg~~Wk~Lar~Lg~~~~~I~~I~~~~~~d~~eq~~~mL~~W~~~~ 68 (99)
T 1fad_A 23 NVGRDWKRLARELKVSEAKMDGIEEKYPRSLSERVRESLKVWKNAE 68 (99)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcc
Confidence 4568999999999999988863 55 67788887775543
No 19
>2hx5_A Hypothetical protein; thioesterase/thiol ester dehydrase-isomerase fold, structura genomics, joint center for structural genomics, JCSG; 1.50A {Prochlorococcus marinus} SCOP: d.38.1.1
Probab=26.08 E-value=65 Score=22.94 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=24.0
Q ss_pred eeeeeeeeeCCCcccccCcHHHHHHHHH
Q psy13110 115 EHTVHVGFDAHTGEFTGMPEAWARLLMS 142 (183)
Q Consensus 115 ~H~~HVg~D~~TGeftGLP~eW~~lL~~ 142 (183)
-..++|-+|.++|.-.-+|+++.+.|..
T Consensus 116 ~~~~~v~vd~~~~r~~~iP~~~~~~l~~ 143 (152)
T 2hx5_A 116 ALIRHLAINAQTRHRCALPEGIDRWLEA 143 (152)
T ss_dssp EEEEEECEETTTCCBCCCCHHHHHHHHH
T ss_pred EEEEEEEEeCCCCeEecCCHHHHHHHHh
Confidence 3667888999999888999999999864
No 20
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=25.97 E-value=65 Score=23.58 Aligned_cols=38 Identities=11% Similarity=0.193 Sum_probs=29.6
Q ss_pred cCcHHHHHHHHHcCCCHHHHhh----Ch----HHHHHHHHhhcccc
Q psy13110 131 GMPEAWARLLMSSNISKLEQKK----NP----QAVLDVLNWFDNST 168 (183)
Q Consensus 131 GLP~eW~~lL~~sGISk~E~k~----Np----qaVldVl~Fy~~~~ 168 (183)
.|-.+|..|-...|++..++.. || +.++++|.......
T Consensus 22 ~lg~dWk~LAr~Lg~s~~~I~~I~~~~~~~l~eq~~~mL~~W~~~~ 67 (118)
T 2of5_H 22 RLGLDWPAVALHLGVSYREVQRIRHEFRDDLDEQIRHMLFSWAERQ 67 (118)
T ss_dssp TCCTTHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcc
Confidence 5667999999999999998874 54 57788887775543
No 21
>3r87_A Putative uncharacterized protein; unknown function; 1.05A {Photobacterium profundum}
Probab=24.29 E-value=59 Score=22.68 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=22.7
Q ss_pred eeeeeeeeeCCCcccccCcHHHHHHHH
Q psy13110 115 EHTVHVGFDAHTGEFTGMPEAWARLLM 141 (183)
Q Consensus 115 ~H~~HVg~D~~TGeftGLP~eW~~lL~ 141 (183)
-..++|-+|.++ .-.-+|+++.+.|.
T Consensus 108 ~~~~~v~vd~~~-r~~~iP~~~~~~l~ 133 (135)
T 3r87_A 108 GDIEMVCLDKEK-RLQPVPADILASMM 133 (135)
T ss_dssp EEEEEEEECTTC-CEECCCHHHHHHHH
T ss_pred EEEEEEEECCCC-CEecCCHHHHHHhc
Confidence 467899999888 88999999999985
No 22
>2pzh_A Hypothetical protein HP_0496; lipid, acyl-COA, bacterial membrane, TOL-PAL system, thioest hot-DOG fold, hydrolase; 1.70A {Helicobacter pylori}
Probab=23.67 E-value=65 Score=22.06 Aligned_cols=27 Identities=15% Similarity=0.070 Sum_probs=23.1
Q ss_pred eeeeeeeeeCCCcccccCcHHHHHHHH
Q psy13110 115 EHTVHVGFDAHTGEFTGMPEAWARLLM 141 (183)
Q Consensus 115 ~H~~HVg~D~~TGeftGLP~eW~~lL~ 141 (183)
-..++|-+|..+|.-.-+|+++.+.|.
T Consensus 107 ~~~~~v~vd~~~~r~~~ip~~~~~~l~ 133 (135)
T 2pzh_A 107 SEIKFGFVNRSTYSPIAIPKLFKELLN 133 (135)
T ss_dssp EEEEEEEECTTTCCEECCCHHHHHHHH
T ss_pred EEEEEEEEECCCCcEecCCHHHHHHhh
Confidence 367788899989988899999998885
No 23
>2o5u_A Thioesterase; putative thioesterese,, hydrolase; 1.91A {Pseudomonas aeruginosa} SCOP: d.38.1.1 PDB: 2av9_A 2o6t_A 2o6b_A 2o6u_A
Probab=21.43 E-value=91 Score=21.96 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=24.1
Q ss_pred eeeeeeeeeCCCcccccCcHHHHHHHHH
Q psy13110 115 EHTVHVGFDAHTGEFTGMPEAWARLLMS 142 (183)
Q Consensus 115 ~H~~HVg~D~~TGeftGLP~eW~~lL~~ 142 (183)
-..++|-+|.++|.-.-+|+++...|..
T Consensus 115 ~~~~~v~vd~~~~r~~~ip~~~~~~l~~ 142 (148)
T 2o5u_A 115 GRFVHVFVERRSSRPVAIPQELRDALAA 142 (148)
T ss_dssp EEEEEEEEETTTCCBCCCCHHHHHHHHT
T ss_pred EEEEEEEEECCCCccccCCHHHHHHHHH
Confidence 4678899999999888999999998864
No 24
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=21.08 E-value=62 Score=21.22 Aligned_cols=19 Identities=16% Similarity=0.351 Sum_probs=16.1
Q ss_pred HHHHHHHHHcCCCHHHHhh
Q psy13110 134 EAWARLLMSSNISKLEQKK 152 (183)
Q Consensus 134 ~eW~~lL~~sGISk~E~k~ 152 (183)
-....+|+.+||+.+|+.+
T Consensus 51 g~lk~Ilkqagl~~eef~~ 69 (70)
T 1whz_A 51 GTFKRILRDAGLTEEEFHN 69 (70)
T ss_dssp HHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHhh
Confidence 4678999999999998753
Done!