RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13110
(183 letters)
>gnl|CDD|144398 pfam00786, PBD, P21-Rho-binding domain. Small domains that bind
Cdc42p- and/or Rho-like small GTPases. Also known as the
Cdc42/Rac interactive binding (CRIB).
Length = 59
Score = 85.2 bits (211), Expect = 1e-22
Identities = 40/55 (72%), Positives = 43/55 (78%)
Query: 107 VISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQKKNPQAVLDVL 161
IS PTNF+H VHVGFD TG FTG+P W +LL SS ISK EQKKNPQAVLDVL
Sbjct: 1 EISTPTNFKHVVHVGFDGQTGFFTGLPPEWEKLLPSSGISKPEQKKNPQAVLDVL 55
>gnl|CDD|238526 cd01093, CRIB_PAK_like, PAK (p21 activated kinase) Binding Domain
(PBD), binds Cdc42p- and/or Rho-like small GTPases; also
known as the Cdc42/Rac interactive binding (CRIB) motif;
has been shown to inhibit transcriptional activation and
cell transformation mediated by the Ras-Rac pathway.
This subgroup of CRIB/PBD-domains is found N-terminal of
Serine/Threonine kinase domains in PAK and PAK-like
proteins.
Length = 46
Score = 84.6 bits (210), Expect = 1e-22
Identities = 33/46 (71%), Positives = 37/46 (80%)
Query: 106 PVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQK 151
P IS+PTNF+H VHVGFD TGEFTG+PE W RLL SS I+K EQK
Sbjct: 1 PEISSPTNFKHRVHVGFDPQTGEFTGLPEEWQRLLKSSGITKEEQK 46
>gnl|CDD|197628 smart00285, PBD, P21-Rho-binding domain. Small domains that bind
Cdc42p- and/or Rho-like small GTPases. Also known as the
Cdc42/Rac interactive binding (CRIB).
Length = 36
Score = 58.8 bits (143), Expect = 1e-12
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 108 ISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLL 140
IS PTNF+H HVGFD TG FTG+P W LL
Sbjct: 1 ISTPTNFKHIAHVGFDGQTGGFTGLPTEWKSLL 33
>gnl|CDD|238077 cd00132, CRIB, PAK (p21 activated kinase) Binding Domain (PBD),
binds Cdc42p- and/or Rho-like small GTPases; also known
as the Cdc42/Rac interactive binding (CRIB) motif; has
been shown to inhibit transcriptional activation and
cell transformation mediated by the Ras-Rac pathway.
CRIB-containing effector proteins are functionally
diverse and include serine/threonine kinases, tyrosine
kinases, actin-binding proteins, and adapter molecules.
Length = 42
Score = 42.4 bits (100), Expect = 2e-06
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 108 ISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISK 147
IS PT+F+H HVG+D + +P L ++ IS
Sbjct: 3 ISTPTDFKHISHVGWDGVGFDGANLPPDLQSLFQTAGISA 42
>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein
Serine/Threonine Kinases, Oxidative stress response
kinase and Ste20-related proline alanine-rich kinase.
Serine/threonine kinases (STKs), oxidative stress
response kinase (OSR1) and Ste20-related proline
alanine-rich kinase (SPAK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The OSR1 and SPAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. SPAK is also referred to as STK39 or PASK
(proline-alanine-rich STE20-related kinase). OSR1 and
SPAK regulate the activity of cation-chloride
cotransporters through direct interaction and
phosphorylation. They are also implicated in
cytoskeletal rearrangement, cell differentiation,
transformation and proliferation. OSR1 and SPAK contain
a conserved C-terminal (CCT) domain, which recognizes a
unique motif ([RK]FX[VI]) present in their activating
kinases (WNK1/WNK4) and their substrates.
Length = 267
Score = 29.2 bits (66), Expect = 1.1
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 53 PPHHHYAPSPVDLKPLPKEPE--PEERTGKKHSKSAK 87
P+ Y P V + L +P KK+SKS +
Sbjct: 205 APYSKYPPMKVLMLTLQNDPPSLETGADYKKYSKSFR 241
>gnl|CDD|172376 PRK13855, PRK13855, type IV secretion system protein VirB10;
Provisional.
Length = 376
Score = 28.3 bits (63), Expect = 2.4
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
Query: 14 LWCGGTTKAIMSDEEDKPPAPPVRLTSNNSFR----GVRGDPPPPH---HHYAPSPVDLK 66
+W GG +K + E PP+ + T+ F V DPP AP +
Sbjct: 47 IWLGGRSK---KENEPAPPSTMI-ATNTKPFHPAPIDVPPDPPAAQEAVQPTAPPSAQSE 102
Query: 67 PLPKEPEPEE 76
P EP PEE
Sbjct: 103 PERNEPRPEE 112
>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing
protein (DUF2360). This is the conserved 140 amino
acid region of a family of proteins conserved from
nematodes to humans. One C. elegans member is annotated
as a Daf-16-dependent longevity protein 1 but this
could not be confirmed. The function is unknown.
Length = 147
Score = 27.7 bits (62), Expect = 2.4
Identities = 13/45 (28%), Positives = 14/45 (31%), Gaps = 4/45 (8%)
Query: 31 PPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPEPE 75
P PP +N PPP A P P EPE
Sbjct: 58 TPPPPASAITNGG----PPPPPPARAEAASPPPPEAPAEPPAEPE 98
>gnl|CDD|234283 TIGR03623, TIGR03623, probable DNA repair protein. Members of this
protein family are bacterial proteins of about 900 amino
acids in length. Members show extended homology to
proteins in TIGR02786, the AddB protein of double-strand
break repair via homologous recombination. Members of
this family, therefore, may be DNA repair proteins.
Length = 874
Score = 28.1 bits (63), Expect = 2.9
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 115 EHTVHVGFDA-HTGEFTGMPEAWARLLMSSNISKLEQKKNPQAVLDV 160
E V + LL S I+ E+++ +A LD
Sbjct: 284 EPLVRTALLLLELLRGKLEQAEASALLRSPYIAGAEEERLARAQLDA 330
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional.
Length = 475
Score = 28.0 bits (62), Expect = 2.9
Identities = 20/88 (22%), Positives = 24/88 (27%), Gaps = 22/88 (25%)
Query: 21 KAIMSDEEDKPPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPEPEERTGK 80
K I E + PAP PPPP AP+ P P
Sbjct: 6 KKIFGKGEAEQPAPAPPS------PAAAPAPPPPAKTAAPATKAAAPAAAAP-------- 51
Query: 81 KHSKSAKHSGAPKGSRSTRRPEAEKPVI 108
+ PK + RR KP
Sbjct: 52 -------RAEKPKKDKP-RRERKPKPAS 71
>gnl|CDD|237257 PRK12902, secA, preprotein translocase subunit SecA; Reviewed.
Length = 939
Score = 27.7 bits (62), Expect = 3.9
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 21 KAIMSDEEDKPPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKP--LPKEPE 73
+ + +++ KPP P R +G P + S + P L +E E
Sbjct: 526 RLVKPEDDHKPPVPLQR--GLKGGQGFGPKAKKPKKTWKASSASIFPCELSEETE 578
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 27.8 bits (62), Expect = 4.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 70 KEPEPEERTGKKHSKSAKHSGAPKGSRSTRRPEAEK 105
E E + R KK +K+A S P G ++ P + K
Sbjct: 995 DERERQARKEKKLAKNATPSKRPSGRQANESPSSLK 1030
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 27.5 bits (62), Expect = 4.5
Identities = 27/149 (18%), Positives = 40/149 (26%), Gaps = 32/149 (21%)
Query: 25 SDEEDKPPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPEPEERTGKKHSK 84
+ + PA R NS P+P L+ P + E +
Sbjct: 436 TKAKKSEPAAASRARPVNS-------ALERLASVRPAPSALEKAPAKKEAYRWKATNPVE 488
Query: 85 SAKHSGAPKGSRSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSN 144
K A P+A K + EH A + WA L+
Sbjct: 489 VKKEPVA--------TPKALKKAL------EHEKTPELAAKLAAEAIERDPWAALVSQLG 534
Query: 145 ISKLEQKKNPQAVLDVLNWFDNSTKEAKG 173
+ L + Q L N+ KE
Sbjct: 535 LPGLVE----QLAL-------NAWKEEHD 552
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin. Chaperonins are
involved in productive folding of proteins. They share a
common general morphology, a double toroid of 2 stacked
rings, each composed of 7-9 subunits. The symmetry of
type I is seven-fold and they are found in eubacteria
(GroEL) and in organelles of eubacterial descent (hsp60
and RBP). With the aid of cochaperonin GroES, GroEL
encapsulates non-native substrate proteins inside the
cavity of the GroEL-ES complex and promotes folding by
using energy derived from ATP hydrolysis.
Length = 520
Score = 27.4 bits (62), Expect = 5.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 115 EHTVHVGFDAHTGEFTGMPEA 135
E G+DA TGE+ M EA
Sbjct: 468 ESPDGFGYDAATGEYVDMIEA 488
>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related
aminotransferases [Amino acid transport and metabolism].
Length = 447
Score = 27.2 bits (61), Expect = 5.6
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 38 LTSNNSFRGVRGDPPPPHHHYAPSP 62
LT + P PP ++ P P
Sbjct: 163 LTGSKPPYKAGFGPLPPGVYHVPYP 187
>gnl|CDD|221535 pfam12333, Ipi1_N, Rix1 complex component involved in 60S ribosome
maturation. This domain family is found in eukaryotes,
and is typically between 91 and 105 amino acids in
length. This family is the N terminal of Ipi1, a
component of the Rix1 complex which works in conjunction
with Rea1 to mature the 60S ribosome.
Length = 86
Score = 25.6 bits (57), Expect = 5.6
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 6/38 (15%)
Query: 133 PEAWARLL------MSSNISKLEQKKNPQAVLDVLNWF 164
W ++L + N + KK VL L F
Sbjct: 48 SGYWVKILNNFFDLLGWNRNGKTSKKARIKVLQALAQF 85
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein;
Provisional.
Length = 617
Score = 27.1 bits (60), Expect = 6.4
Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 7/70 (10%)
Query: 34 PPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPEPEERTGKKHSKSAKHSGAPK 93
P+R+ PPPPH P+ P P R + + P
Sbjct: 80 RPIRIAITVDPSAGEPAPPPPHARRTSE-------PELPRPGRRPYEGYGGPRADDRPPG 132
Query: 94 GSRSTRRPEA 103
R + P A
Sbjct: 133 LPRQDQLPTA 142
>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2);
Provisional.
Length = 576
Score = 26.9 bits (59), Expect = 7.0
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Query: 26 DEEDKPPAPP-VRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPE-PEERTGKKHS 83
DE + PP PP V SN+ F +PP P + P P E PE+ +
Sbjct: 356 DESNVPPNPPNVPGGSNSEFSSDVENPPNPPNPDIPEQEPNIPEDSNKEVPEDVPMEPED 415
Query: 84 KSAKHSGAPKGSRSTRRPEAEKPVISNPTNFE 115
+ PK + + E PVI P + E
Sbjct: 416 DRDNNFNEPKKPENKGDGQNE-PVIPKPLDNE 446
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 27.0 bits (60), Expect = 7.0
Identities = 20/93 (21%), Positives = 24/93 (25%), Gaps = 10/93 (10%)
Query: 31 PPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPEPEERTGKKHSKSAKHSG 90
P AP + PP P+ V + P P+ K K S
Sbjct: 411 PSAPQSATQPAGT--------PPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSK 462
Query: 91 APKGSRSTRRPEAEKPVISNPTNFEHTVHVGFD 123
ST RP EK T G
Sbjct: 463 VSSLGPSTLRPIQEK--AEQATGNIKEAPTGTQ 493
>gnl|CDD|140276 PTZ00249, PTZ00249, variable surface protein Vir28; Provisional.
Length = 516
Score = 26.9 bits (59), Expect = 7.2
Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 9/91 (9%)
Query: 31 PPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPEPEERTGKKHSKSAKHSG 90
PP + + ++ R + G+ PP H SP P E P S + G
Sbjct: 217 PPREEQKAVTAHAHRRISGEARPPKHISFSSPHAHGRPPVETRP---PNPVSVSSPQAHG 273
Query: 91 APKGSRSTRRPEAEKPVISNPTNFEHTVHVG 121
G T P+++ P++ H +
Sbjct: 274 RHPGETHTP------PLVTVPSSKAHDRNPV 298
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 26.6 bits (59), Expect = 8.2
Identities = 18/83 (21%), Positives = 23/83 (27%), Gaps = 10/83 (12%)
Query: 31 PPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPEPEERTGKKH-------- 82
P APP P AP+ V L P P E
Sbjct: 414 PAAPPAAAPPAPVAAPAAAAPAAAPAA-APAAVALAPAPPAQAAPETVAIPVRVAPEPAV 472
Query: 83 -SKSAKHSGAPKGSRSTRRPEAE 104
S + + AP +R T E +
Sbjct: 473 ASAAPAPAAAPAAARLTPTEEGD 495
>gnl|CDD|223079 PHA03419, PHA03419, E4 protein; Provisional.
Length = 200
Score = 26.1 bits (57), Expect = 9.5
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 51 PPPPHHHYAPSPVDLKPLPKEPEPEERTGKKHSKSAKHSGAPKGSRSTRRPEAE 104
PP P H + K L +P P + +K K A G + + PEA+
Sbjct: 67 PPSPGHPPQTNDTHEKDLALQPPPGGKKKEKK-KKETEKPAQGGEKPDQGPEAK 119
>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional.
Length = 511
Score = 26.6 bits (59), Expect = 9.7
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Query: 65 LKPLPKEPEPEERTGKKHSKSAKHSGAPKGSRSTRRPEAEKPVISNPTNFEHTVH--VGF 122
+ LP P +E G S+ +G PKG +RP E+P P + GF
Sbjct: 142 VAGLPATPIADESLGTDMLYSSGTTGRPKG---IKRPLPEQP-PDTPLPLTAFLQRLWGF 197
Query: 123 DAHT 126
+
Sbjct: 198 RSDM 201
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.128 0.390
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,322,831
Number of extensions: 831953
Number of successful extensions: 780
Number of sequences better than 10.0: 1
Number of HSP's gapped: 748
Number of HSP's successfully gapped: 64
Length of query: 183
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 92
Effective length of database: 6,901,388
Effective search space: 634927696
Effective search space used: 634927696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (25.2 bits)