RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13110
(183 letters)
>1f3m_A Serine/threonine-protein kinase PAK-alpha; kinase domain,
autoinhibitory fragment, homodimer, transferase; 2.30A
{Homo sapiens} SCOP: j.66.1.1 PDB: 1e0a_B* 1ees_B
Length = 80
Score = 101 bits (253), Expect = 5e-29
Identities = 54/77 (70%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 104 EKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQKKNPQAVLDVLNW 163
E+P IS P++FEHT+HVGFDA TGEFTGMPE WARLL +SNI+K EQKKNPQAVLDVL
Sbjct: 2 ERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKSEQKKNPQAVLDVLE- 60
Query: 164 FDNSTKEAKGSKYMTTT 180
F NS K + KYM+ T
Sbjct: 61 FYNSKKTSNSQKYMSFT 77
>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB,
protein-protein complex, structu genomics, structural
genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens}
Length = 35
Score = 67.0 bits (164), Expect = 5e-16
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 108 ISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLL 140
IS P NF+H VH FD G+F G+P W +L
Sbjct: 2 ISAPQNFQHRVHTSFDPKEGKFVGLPPQWQNIL 34
>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3,
small GTP binding protein, P21 RAC, RAS-related
botulinum toxin substrate 3; HET: GCP; 1.75A {Homo
sapiens}
Length = 36
Score = 67.0 bits (164), Expect = 5e-16
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 108 ISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMS 142
IS P++FEHT+HVGFDA TGEFTGMPE WARLL +
Sbjct: 2 ISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQT 36
>2ov2_I Serine/threonine-protein kinase PAK 4; GTPase RAC3, small GTP
binding protein, P21 RAC, RAS-related botulinum toxin
substrate 3, signalling protein; HET: GCP; 2.10A {Homo
sapiens}
Length = 35
Score = 66.7 bits (163), Expect = 7e-16
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 108 ISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLL 140
IS P+NFEH VH GFD H +FTG+P W L+
Sbjct: 2 ISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLI 34
>1cee_B Wiskott-aldrich syndrome protein WAsp; CDC42 actin regulator GTPase
and the GTPase binding domain of ITS effector WAsp; HET:
GCP; NMR {Homo sapiens}
Length = 59
Score = 65.2 bits (159), Expect = 5e-15
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 100 RPEAEKPVISNPTNFEHTVHVGFDAHTG-EFTGMPEAWARLLMSSNISKLEQKKN 153
+ + K I P+ F+H HVG+D G + + L + IS+ +
Sbjct: 1 KKKISKADIGAPSGFKHVSHVGWDPQNGFDVNNLDPDLRSLFSRAGISEAQLTDA 55
>1ej5_A WAsp, wiskott-aldrich syndrome protein; alpha helix, beta-hairpin
turn, blood clotting; NMR {Homo sapiens} SCOP: a.68.1.1
PDB: 1t84_A* 2k42_A
Length = 107
Score = 44.7 bits (105), Expect = 1e-06
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 112 TNFEHTVHVGFDAHTG-EFTGMPEAWARLLMSSNISK--LEQKKNPQAVLDVLN 162
+ F+H HVG+D G + + L + IS+ L + + + D +
Sbjct: 1 SGFKHVSHVGWDPQNGFDVNNLDPDLRSLFSRAGISEAQLTDAETSKLIYDFIE 54
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 2.4
Identities = 34/229 (14%), Positives = 56/229 (24%), Gaps = 65/229 (28%)
Query: 2 SVDISALYHQRA--LW------CGGTTKAIMSDEEDKPPAPPVRLTSNNSFRGVRGDPPP 53
+ + A L T+ +D+E P P L F G
Sbjct: 19 VLLVPTASFFIASQLQEQFNKILPEPTEGFAADDE---PTTPAELVG--KFLGYVSSLVE 73
Query: 54 PHHHYAPSPVDLKPLPKEPEPEERTGKK-HSKSAKHSGAPKGSRSTR----------RPE 102
P V L E E G H+ +AK + R
Sbjct: 74 PSKVGQFDQV-LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIM 132
Query: 103 AEKPVISNPTN--FEHTVHVGFDAHTGEFT--------GMPEAW---------------- 136
A++P + F G G + +
Sbjct: 133 AKRPFDKKSNSALFRA-------VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG 185
Query: 137 ------ARLLMSSNISKLEQKKNPQAVLDVLNWFDNSTKEAKGSKYMTT 179
A L + L+ +K L++L W +N + Y+ +
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN-TPDKDYLLS 233
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation,
ADP, nucleotide binding, CARD, apoptosis; HET: ADP;
2.21A {Homo sapiens}
Length = 591
Score = 27.5 bits (61), Expect = 3.0
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 17/56 (30%)
Query: 139 LLMSSNISKLEQKKNPQA-----VLD------VLNWFDNSTKEAKGSKYMTTTRMM 183
L + +L + +LD VL FD+ + + TTR
Sbjct: 218 LNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDS------QCQILLTTRDK 267
>2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A
{Nicotiana tabacum}
Length = 453
Score = 27.2 bits (60), Expect = 3.4
Identities = 8/91 (8%), Positives = 23/91 (25%), Gaps = 5/91 (5%)
Query: 25 SDEEDKPPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPEPEERTGKKHSK 84
+++ A + S + + + P ++
Sbjct: 186 FGGDEQFLANEFIPFYDRSVIKDPNGVGMSIWNEMKKYKHMMKMSDVVTPPDKVRGTFII 245
Query: 85 SAKHSGAPKGSRSTRRPEAEKPVISNPTNFE 115
+ G K +P +++ T+F
Sbjct: 246 TRHDIGKLK-----NLVLTRRPKLTHVTSFT 271
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase;
HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP:
c.37.1.20 PDB: 1s9h_A
Length = 267
Score = 26.8 bits (59), Expect = 3.7
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 16 CGGTTKAIMSDEEDKPPA----PPVRLTSNNSFRGVRGDPPPPHHHYAP 60
GG+ + D++ K A PV +TSN + V H P
Sbjct: 171 LGGSK--VRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQP 217
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel,
cold shock domain, ssDNA binding, DNA B protein; 2.80A
{Homo sapiens}
Length = 147
Score = 26.1 bits (57), Expect = 5.7
Identities = 13/43 (30%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 24 MSDEEDKPPAPPVRLTSNNSFRGVRGDPPPP---HHHYAPSPV 63
MS E PP PP S R P + PSP+
Sbjct: 1 MSSEPPPPPQPPTHQASVGLLDTPRSRERSPSPLRGNVVPSPL 43
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding,
ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Length = 543
Score = 26.4 bits (59), Expect = 7.2
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 107 VISNPTNFEHTVHVGFDAHTGEFTGMPEA 135
++ GF+A TGEF M EA
Sbjct: 464 IVQQILAETKNPRYGFNAATGEFVDMVEA 492
>2ali_A Hypothetical protein PA2801; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.75A {Pseudomonas aeruginosa} SCOP:
d.38.1.1 PDB: 3qy3_A
Length = 158
Score = 25.5 bits (56), Expect = 9.0
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 116 HTVHVGFDAHTGEFTGMPEAWARLLMSS 143
H V T +P++ + S
Sbjct: 131 HCKLVWVRHAENRSTPVPDSIRAAIAGS 158
>3sbt_B A1 cistron-splicing factor AAR2; rnaseh like domain, VHS like
domain, U5 snRNP assembly; 1.80A {Saccharomyces
cerevisiae} PDB: 3sbs_A
Length = 363
Score = 25.9 bits (56), Expect = 9.0
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 38 LTSNNSFRGVRGDPPPPHH--HYAPS 61
+ N F G++ P H H+ +
Sbjct: 24 VKENQPFHGIKDIPIGHVHVIHFQHA 49
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.128 0.390
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,886,184
Number of extensions: 162037
Number of successful extensions: 385
Number of sequences better than 10.0: 1
Number of HSP's gapped: 376
Number of HSP's successfully gapped: 31
Length of query: 183
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 95
Effective length of database: 4,244,745
Effective search space: 403250775
Effective search space used: 403250775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (24.7 bits)