RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13110
         (183 letters)



>d1ej5a_ a.68.1.1 (A:) Wiscott-Aldrich syndrome protein, WASP,
           C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 107

 Score = 69.0 bits (169), Expect = 2e-16
 Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 112 TNFEHTVHVGFDAHTG-EFTGMPEAWARLLMSSNISKLEQKKNPQAVLDVLNWFDNSTKE 170
           + F+H  HVG+D   G +   +      L   + IS+  Q  + +    + ++ ++    
Sbjct: 1   SGFKHVSHVGWDPQNGFDVNNLDPDLRSLFSRAGISE-AQLTDAETSKLIYDFIEDQGGL 59

Query: 171 AKGSKYM 177
               + M
Sbjct: 60  EAVRQEM 66


>d3eipa_ d.26.2.1 (A:) Colicin E3 immunity protein {Escherichia coli
           [TaxId: 562]}
          Length = 84

 Score = 25.5 bits (56), Expect = 1.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 161 LNWFDNSTKEAKGSKY 176
           L WFD ST++ KG +Y
Sbjct: 6   LTWFDKSTEDFKGEEY 21


>d2hx5a1 d.38.1.1 (A:1-144) Hypothetical protein PMT2055
           {Prochlorococcus marinus [TaxId: 1219]}
          Length = 144

 Score = 24.8 bits (53), Expect = 5.7
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 116 HTVHVGFDAHTGEFTGMPEAWARLLMSS 143
              H+  +A T     +PE   R L +S
Sbjct: 116 LIRHLAINAQTRHRCALPEGIDRWLEAS 143


>d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b,
           C-domain {Pseudomonas putida [TaxId: 303]}
          Length = 134

 Score = 24.3 bits (52), Expect = 7.2
 Identities = 8/48 (16%), Positives = 13/48 (27%), Gaps = 5/48 (10%)

Query: 15  WCGGTTKAIMSDEEDKPPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSP 62
           +       +         AP  R+T  ++       P      Y P P
Sbjct: 79  FGAELVSLVQEHCFHHLEAPIERVTGWDTPY-----PHAQEWAYFPGP 121


>d2alia1 d.38.1.1 (A:5-134) Hypothetical protein PA2801 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 130

 Score = 24.0 bits (51), Expect = 8.5
 Identities = 4/25 (16%), Positives = 8/25 (32%)

Query: 116 HTVHVGFDAHTGEFTGMPEAWARLL 140
           H   V         T +P++    +
Sbjct: 105 HCKLVWVRHAENRSTPVPDSIRAAI 129


>d1hqla_ b.29.1.1 (A:) Legume lectin {Griffonia simplicifolia,
           lectin I-b4 [TaxId: 3850]}
          Length = 236

 Score = 24.2 bits (52), Expect = 9.6
 Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 4/34 (11%)

Query: 101 PEAEKPVISNP----TNFEHTVHVGFDAHTGEFT 130
           P+    ++S+      N   +V VG  A TG   
Sbjct: 188 PDGSDYILSHSVDMRQNLPESVRVGISASTGNNQ 221


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.128    0.390 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 695,918
Number of extensions: 31404
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 8
Length of query: 183
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,309,196
Effective search space: 134847188
Effective search space used: 134847188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.2 bits)