RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13111
         (127 letters)



>d1nnsa_ c.88.1.1 (A:) Asparaginase type II {Escherichia coli
           [TaxId: 562]}
          Length = 326

 Score = 25.9 bits (56), Expect = 1.5
 Identities = 5/22 (22%), Positives = 10/22 (45%)

Query: 9   QCQNGRVDPEYQKNLSKPGLVA 30
           +   G    + + + +K G VA
Sbjct: 272 RVPTGATTQDAEVDDAKYGFVA 293


>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 511

 Score = 24.9 bits (54), Expect = 3.5
 Identities = 11/47 (23%), Positives = 18/47 (38%)

Query: 44 PIPKVNNYHQTYSPWAFSVPGSSPHSPLKYMKLSYASAPGKLPSSPT 90
          P P   +Y  T+    +++  + P      MK    S    + S PT
Sbjct: 11 PTPNTVHYILTHFKGVWNIVNNIPFLRSLIMKYVLTSRSYLIDSPPT 57


>d1agxa_ c.88.1.1 (A:) Glutaminase-asparaginase {Acinetobacter
           glutaminasificans [TaxId: 474]}
          Length = 331

 Score = 24.7 bits (53), Expect = 3.9
 Identities = 5/22 (22%), Positives = 9/22 (40%)

Query: 9   QCQNGRVDPEYQKNLSKPGLVA 30
           +   G V    ++   K G +A
Sbjct: 277 RVAQGFVLRNAEQPDDKYGWIA 298


>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase
           {Salmonella typhi [TaxId: 90370]}
          Length = 252

 Score = 24.2 bits (52), Expect = 5.0
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 69  SPLKYMKLSYASAPGKLPSSPTRKV 93
           S   +  +  ASAPG++  +  R V
Sbjct: 221 SAATFGAVKQASAPGQIAVNDLRSV 245


>d1wsaa_ c.88.1.1 (A:) Asparaginase type II {Wolinella succinogenes
           [TaxId: 844]}
          Length = 328

 Score = 24.3 bits (52), Expect = 6.1
 Identities = 6/22 (27%), Positives = 10/22 (45%)

Query: 9   QCQNGRVDPEYQKNLSKPGLVA 30
           +  +G    E + +  K G VA
Sbjct: 274 RVGSGSTTQEAEVDDKKLGFVA 295


>d1epwa3 d.92.1.7 (A:1-533) Botulinum neurotoxin {Clostridium
           botulinum, serotype B [TaxId: 1491]}
          Length = 533

 Score = 23.7 bits (51), Expect = 8.8
 Identities = 10/47 (21%), Positives = 17/47 (36%)

Query: 11  QNGRVDPEYQKNLSKPGLVATAIGQNHSAAGPMPIPKVNNYHQTYSP 57
           QN  ++ +  + +SK  L    I    S   P     V+N    +  
Sbjct: 411 QNKAINKQAYEEISKEHLAVYKIQMCKSVKAPGICIDVDNEDLFFIA 457


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.129    0.422 

Gapped
Lambda     K      H
   0.267   0.0554    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 490,059
Number of extensions: 19288
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 9
Length of query: 127
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,377,846
Effective search space: 71647992
Effective search space used: 71647992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.7 bits)