BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13112
(302 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P82916|RT17_BOVIN 28S ribosomal protein S17, mitochondrial OS=Bos taurus GN=MRPS17
PE=1 SV=3
Length = 130
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 173 LGKYFPKFTVMYAHDPDKICKTGDIVLIEELPQKLTTLITHKVNKVVYPLGDITDPITGK 232
L KYF K +AHD + C GDIVL++ LP T + H++ ++V+ +G + DP+TGK
Sbjct: 39 LLKYFNKRKTYFAHDALQQCTVGDIVLLKALPVPRTKHVKHELAEIVFKVGQVVDPVTGK 98
Query: 233 KVVG 236
+ G
Sbjct: 99 RCAG 102
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 89 RVARPYMQPRVANTRNEVRYFPKFTVMYAHDPDKICKTGDIVLIEELPQKLTTLITHKVN 148
RV R + P + ++YF K +AHD + C GDIVL++ LP T + H++
Sbjct: 29 RVTRLVLDPYL------LKYFNKRKTYFAHDALQQCTVGDIVLLKALPVPRTKHVKHELA 82
Query: 149 KVVYPLGDITDPITGKKVVG 168
++V+ +G + DP+TGK+ G
Sbjct: 83 EIVFKVGQVVDPVTGKRCAG 102
>sp|Q9CQE3|RT17_MOUSE 28S ribosomal protein S17, mitochondrial OS=Mus musculus GN=Mrps17
PE=2 SV=1
Length = 120
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 173 LGKYFPKFTVMYAHDPDKICKTGDIVLIEELPQKLTTLITHKVNKVVYPLGDITDPITGK 232
L KYF K +AHD + C GDIVL+ LP + + H++ ++++ +G + DP+TGK
Sbjct: 39 LLKYFNKRKTYFAHDALQQCSVGDIVLLRALPVPRSKHVKHELAEIIFKVGRVIDPVTGK 98
Query: 233 KVVG 236
G
Sbjct: 99 PCAG 102
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%)
Query: 106 VRYFPKFTVMYAHDPDKICKTGDIVLIEELPQKLTTLITHKVNKVVYPLGDITDPITGKK 165
++YF K +AHD + C GDIVL+ LP + + H++ ++++ +G + DP+TGK
Sbjct: 40 LKYFNKRKTYFAHDALQQCSVGDIVLLRALPVPRSKHVKHELAEIIFKVGRVIDPVTGKP 99
Query: 166 VVG 168
G
Sbjct: 100 CAG 102
>sp|Q9Y2R5|RT17_HUMAN 28S ribosomal protein S17, mitochondrial OS=Homo sapiens GN=MRPS17
PE=2 SV=1
Length = 130
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 173 LGKYFPKFTVMYAHDPDKICKTGDIVLIEELPQKLTTLITHKVNKVVYPLGDITDPITGK 232
L KYF K +AHD + C GDIVL+ LP + H++ ++V+ +G + DP+TGK
Sbjct: 39 LLKYFNKRKTYFAHDALQQCTVGDIVLLRALPVPRAKHVKHELAEIVFKVGKVIDPVTGK 98
Query: 233 KVVG 236
G
Sbjct: 99 PCAG 102
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 89 RVARPYMQPRVANTRNEVRYFPKFTVMYAHDPDKICKTGDIVLIEELPQKLTTLITHKVN 148
RV R + P + ++YF K +AHD + C GDIVL+ LP + H++
Sbjct: 29 RVTRLVLDPYL------LKYFNKRKTYFAHDALQQCTVGDIVLLRALPVPRAKHVKHELA 82
Query: 149 KVVYPLGDITDPITGKKVVG 168
++V+ +G + DP+TGK G
Sbjct: 83 EIVFKVGKVIDPVTGKPCAG 102
>sp|Q11189|YPDA_CAEEL Uncharacterized protein C05D11.10 OS=Caenorhabditis elegans
GN=C05D11.10 PE=4 SV=2
Length = 160
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 173 LGKYFPKFTVMYAHDPDKICKTGDIVLIEEL--PQKLTTLITHKVNKVVYPLGDITDPIT 230
L KYF + +A D + GD VLI+++ + ++H V++VV+ G+I DP+T
Sbjct: 47 LKKYFARSFDFWALDKTSLGNIGDTVLIKQIDGSSRPKANVSHAVDRVVFKFGNIVDPVT 106
Query: 231 GKKV 234
G+K+
Sbjct: 107 GRKI 110
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 107 RYFPKFTVMYAHDPDKICKTGDIVLIEEL--PQKLTTLITHKVNKVVYPLGDITDPITGK 164
+YF + +A D + GD VLI+++ + ++H V++VV+ G+I DP+TG+
Sbjct: 49 KYFARSFDFWALDKTSLGNIGDTVLIKQIDGSSRPKANVSHAVDRVVFKFGNIVDPVTGR 108
Query: 165 KV 166
K+
Sbjct: 109 KI 110
>sp|Q9PE67|RS17_XYLFA 30S ribosomal protein S17 OS=Xylella fastidiosa (strain 9a5c)
GN=rpsQ PE=3 SV=1
Length = 89
Score = 39.3 bits (90), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEELP 204
GKY + T ++AHD D +C GD+VL+ E+
Sbjct: 41 GKYIKRSTKLHAHDADDLCNEGDVVLMTEVA 71
Score = 35.4 bits (80), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 107 RYFPKFTVMYAHDPDKICKTGDIVLIEELP 136
+Y + T ++AHD D +C GD+VL+ E+
Sbjct: 42 KYIKRSTKLHAHDADDLCNEGDVVLMTEVA 71
>sp|Q87E73|RS17_XYLFT 30S ribosomal protein S17 OS=Xylella fastidiosa (strain Temecula1 /
ATCC 700964) GN=rpsQ PE=3 SV=1
Length = 89
Score = 36.2 bits (82), Expect = 0.29, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEEL 203
GKY + T ++AHD D +C GD+VL+ E+
Sbjct: 41 GKYIKRSTKLHAHDADDLCNEGDVVLMTEV 70
Score = 33.1 bits (74), Expect = 2.7, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 107 RYFPKFTVMYAHDPDKICKTGDIVLIEEL 135
+Y + T ++AHD D +C GD+VL+ E+
Sbjct: 42 KYIKRSTKLHAHDADDLCNEGDVVLMTEV 70
>sp|B2I8H8|RS17_XYLF2 30S ribosomal protein S17 OS=Xylella fastidiosa (strain M23)
GN=rpsQ PE=3 SV=1
Length = 88
Score = 36.2 bits (82), Expect = 0.32, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEEL 203
GKY + T ++AHD D +C GD+VL+ E+
Sbjct: 40 GKYIKRSTKLHAHDADDLCNEGDVVLMTEV 69
Score = 33.1 bits (74), Expect = 2.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 107 RYFPKFTVMYAHDPDKICKTGDIVLIEEL 135
+Y + T ++AHD D +C GD+VL+ E+
Sbjct: 41 KYIKRSTKLHAHDADDLCNEGDVVLMTEV 69
>sp|A7HM43|RS17_FERNB 30S ribosomal protein S17 OS=Fervidobacterium nodosum (strain ATCC
35602 / DSM 5306 / Rt17-B1) GN=rpsQ PE=3 SV=1
Length = 100
Score = 35.8 bits (81), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 173 LGKYFPKFTVMYAHDPDKICKTGDIVLIEE 202
GKY + YAHD + C+ GD+V IEE
Sbjct: 32 FGKYVKRTKKFYAHDENNACRVGDVVEIEE 61
Score = 32.0 bits (71), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 107 RYFPKFTVMYAHDPDKICKTGDIVLIEE 134
+Y + YAHD + C+ GD+V IEE
Sbjct: 34 KYVKRTKKFYAHDENNACRVGDVVEIEE 61
>sp|B0U5K8|RS17_XYLFM 30S ribosomal protein S17 OS=Xylella fastidiosa (strain M12)
GN=rpsQ PE=3 SV=1
Length = 89
Score = 35.4 bits (80), Expect = 0.45, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEEL 203
GKY + T ++AHD D +C GD+VL+ E+
Sbjct: 41 GKYIKRSTKIHAHDADDLCNEGDVVLMTEV 70
Score = 32.3 bits (72), Expect = 4.0, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 107 RYFPKFTVMYAHDPDKICKTGDIVLIEEL 135
+Y + T ++AHD D +C GD+VL+ E+
Sbjct: 42 KYIKRSTKIHAHDADDLCNEGDVVLMTEV 70
>sp|B4SKX2|RS17_STRM5 30S ribosomal protein S17 OS=Stenotrophomonas maltophilia (strain
R551-3) GN=rpsQ PE=3 SV=1
Length = 89
Score = 35.4 bits (80), Expect = 0.49, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEEL 203
GKY + T ++AHD D CK GD+V + E+
Sbjct: 40 GKYIKRSTKLHAHDADNACKEGDVVRVTEI 69
Score = 32.3 bits (72), Expect = 4.4, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 107 RYFPKFTVMYAHDPDKICKTGDIVLIEEL 135
+Y + T ++AHD D CK GD+V + E+
Sbjct: 41 KYIKRSTKLHAHDADNACKEGDVVRVTEI 69
>sp|B2FQJ3|RS17_STRMK 30S ribosomal protein S17 OS=Stenotrophomonas maltophilia (strain
K279a) GN=rpsQ PE=3 SV=1
Length = 89
Score = 35.0 bits (79), Expect = 0.65, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEEL 203
GKY + T ++AHD D CK GD+V + E+
Sbjct: 40 GKYIKRSTKLHAHDADNACKEGDVVRVTEI 69
Score = 32.0 bits (71), Expect = 5.6, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 107 RYFPKFTVMYAHDPDKICKTGDIVLIEEL 135
+Y + T ++AHD D CK GD+V + E+
Sbjct: 41 KYIKRSTKLHAHDADNACKEGDVVRVTEI 69
>sp|A6LLM2|RS17_THEM4 30S ribosomal protein S17 OS=Thermosipho melanesiensis (strain
BI429 / DSM 12029) GN=rpsQ PE=3 SV=1
Length = 99
Score = 34.7 bits (78), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 173 LGKYFPKFTVMYAHDPDKICKTGDIV-LIEELPQKLTTLITHKVNKVV 219
+GKY + YAHD + C+ GDIV ++E P L+ L KV ++V
Sbjct: 32 VGKYIKRTKKYYAHDENNECRVGDIVEIVESRP--LSKLKRWKVERIV 77
>sp|Q21M49|RS17_SACD2 30S ribosomal protein S17 OS=Saccharophagus degradans (strain 2-40
/ ATCC 43961 / DSM 17024) GN=rpsQ PE=3 SV=1
Length = 88
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 16/29 (55%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEE 202
GKY K T M AHD CK GD V I E
Sbjct: 38 GKYVSKSTKMKAHDEANDCKIGDTVTIAE 66
>sp|Q9HWE4|RS17_PSEAE 30S ribosomal protein S17 OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rpsQ PE=3
SV=1
Length = 88
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEE 202
GKY + T ++AHD C+ GD+V I E
Sbjct: 38 GKYVKRSTKLHAHDESNQCRIGDLVTIRE 66
>sp|Q02T71|RS17_PSEAB 30S ribosomal protein S17 OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=rpsQ PE=3 SV=1
Length = 88
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEE 202
GKY + T ++AHD C+ GD+V I E
Sbjct: 38 GKYVKRSTKLHAHDESNQCRIGDLVTIRE 66
>sp|B7V653|RS17_PSEA8 30S ribosomal protein S17 OS=Pseudomonas aeruginosa (strain LESB58)
GN=rpsQ PE=3 SV=1
Length = 88
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEE 202
GKY + T ++AHD C+ GD+V I E
Sbjct: 38 GKYVKRSTKLHAHDESNQCRIGDLVTIRE 66
>sp|A6UZJ7|RS17_PSEA7 30S ribosomal protein S17 OS=Pseudomonas aeruginosa (strain PA7)
GN=rpsQ PE=3 SV=1
Length = 88
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEE 202
GKY + T ++AHD C+ GD+V I E
Sbjct: 38 GKYVKRSTKLHAHDESNQCRIGDLVTIRE 66
>sp|Q3J8S3|RS17_NITOC 30S ribosomal protein S17 OS=Nitrosococcus oceani (strain ATCC
19707 / NCIMB 11848) GN=rpsQ PE=3 SV=1
Length = 86
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 175 KYFPKFTVMYAHDPDKICKTGDIVLI 200
KY +FT ++AHD + C+ GDIV I
Sbjct: 39 KYVRRFTKLHAHDENNECRMGDIVAI 64
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 107 RYFPKFTVMYAHDPDKICKTGDIVLI 132
+Y +FT ++AHD + C+ GDIV I
Sbjct: 39 KYVRRFTKLHAHDENNECRMGDIVAI 64
>sp|Q15YN0|RS17_PSEA6 30S ribosomal protein S17 OS=Pseudoalteromonas atlantica (strain
T6c / ATCC BAA-1087) GN=rpsQ PE=3 SV=1
Length = 83
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEEL 203
GK+ + T ++AHD C TGD+V + E
Sbjct: 36 GKFIKRTTKLHAHDETNQCNTGDVVTVREC 65
>sp|B3PK46|RS17_CELJU 30S ribosomal protein S17 OS=Cellvibrio japonicus (strain Ueda107)
GN=rpsQ PE=3 SV=1
Length = 88
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEE 202
GKYF K + ++AHD C+ GD V + E
Sbjct: 38 GKYFTKSSKVHAHDEKNECRIGDTVTVAE 66
>sp|Q5GWU3|RS17_XANOR 30S ribosomal protein S17 OS=Xanthomonas oryzae pv. oryzae (strain
KACC10331 / KXO85) GN=rpsQ PE=3 SV=1
Length = 89
Score = 33.5 bits (75), Expect = 1.7, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEEL 203
GKY + T ++AHD D C GD+V + E+
Sbjct: 40 GKYIKRSTKLHAHDADNACNEGDVVRVTEI 69
>sp|B2SQR9|RS17_XANOP 30S ribosomal protein S17 OS=Xanthomonas oryzae pv. oryzae (strain
PXO99A) GN=rpsQ PE=3 SV=1
Length = 89
Score = 33.5 bits (75), Expect = 1.7, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEEL 203
GKY + T ++AHD D C GD+V + E+
Sbjct: 40 GKYIKRSTKLHAHDADNACNEGDVVRVTEI 69
>sp|Q2NZZ4|RS17_XANOM 30S ribosomal protein S17 OS=Xanthomonas oryzae pv. oryzae (strain
MAFF 311018) GN=rpsQ PE=3 SV=1
Length = 89
Score = 33.5 bits (75), Expect = 1.7, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEEL 203
GKY + T ++AHD D C GD+V + E+
Sbjct: 40 GKYIKRSTKLHAHDADNACNEGDVVRVTEI 69
>sp|Q3BWX4|RS17_XANC5 30S ribosomal protein S17 OS=Xanthomonas campestris pv. vesicatoria
(strain 85-10) GN=rpsQ PE=3 SV=1
Length = 89
Score = 33.5 bits (75), Expect = 1.7, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEEL 203
GKY + T ++AHD D C GD+V + E+
Sbjct: 40 GKYIKRSTKLHAHDADNACNEGDVVRVTEI 69
>sp|Q8PNR6|RS17_XANAC 30S ribosomal protein S17 OS=Xanthomonas axonopodis pv. citri
(strain 306) GN=rpsQ PE=3 SV=1
Length = 89
Score = 33.5 bits (75), Expect = 1.7, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEEL 203
GKY + T ++AHD D C GD+V + E+
Sbjct: 40 GKYIKRSTKLHAHDADNACNEGDVVRVTEI 69
>sp|A8F4S0|RS17_THELT 30S ribosomal protein S17 OS=Thermotoga lettingae (strain ATCC
BAA-301 / DSM 14385 / TMO) GN=rpsQ PE=3 SV=1
Length = 95
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 175 KYFPKFTVMYAHDPDKICKTGDIVLIEE 202
KY + YAHD CK GD VLIEE
Sbjct: 34 KYIQRSKKYYAHDEKNECKAGDTVLIEE 61
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 107 RYFPKFTVMYAHDPDKICKTGDIVLIEE 134
+Y + YAHD CK GD VLIEE
Sbjct: 34 KYIQRSKKYYAHDEKNECKAGDTVLIEE 61
>sp|Q11HR1|RS17_MESSB 30S ribosomal protein S17 OS=Mesorhizobium sp. (strain BNC1)
GN=rpsQ PE=3 SV=1
Length = 80
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 89 RVARPYMQPRVANTRNEVRYFPKFTVMYAHDPDKICKTGDIVLIEE 134
RV R + P + T VR ++ AHD + +CK GD+VLI+E
Sbjct: 22 RVERRFAHPLLKKT---VRRSKRYK---AHDENNMCKVGDVVLIQE 61
>sp|Q1H4M8|RS17_METFK 30S ribosomal protein S17 OS=Methylobacillus flagellatus (strain KT
/ ATCC 51484 / DSM 6875) GN=rpsQ PE=3 SV=1
Length = 90
Score = 32.7 bits (73), Expect = 3.2, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 173 LGKYFPKFTVMYAHDPDKICKTGDIVLIEELPQKLTTLITHKVNKVV 219
+GK + +AHD + CK GD+V+IEE + L+ T +V+K+V
Sbjct: 39 IGKVVRRSNKFHAHDENNECKEGDLVMIEE-SRPLSKTKTWRVSKIV 84
>sp|A4XZ81|RS17_PSEMY 30S ribosomal protein S17 OS=Pseudomonas mendocina (strain ymp)
GN=rpsQ PE=3 SV=1
Length = 88
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEEL-PQKLT 208
GKY + T ++AHD CK GD V I E PQ T
Sbjct: 38 GKYVKRSTKLHAHDESNQCKIGDKVSIRETRPQSKT 73
>sp|Q0I096|RS17_SHESR 30S ribosomal protein S17 OS=Shewanella sp. (strain MR-7) GN=rpsQ
PE=3 SV=1
Length = 82
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEEL 203
GKY + T ++AHD C GD+V I E
Sbjct: 35 GKYIKRTTKIHAHDEANQCNEGDVVAIREC 64
>sp|Q0HNS8|RS17_SHESM 30S ribosomal protein S17 OS=Shewanella sp. (strain MR-4) GN=rpsQ
PE=3 SV=1
Length = 82
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEEL 203
GKY + T ++AHD C GD+V I E
Sbjct: 35 GKYIKRTTKIHAHDEANQCNEGDVVAIREC 64
>sp|A0KRN3|RS17_SHESA 30S ribosomal protein S17 OS=Shewanella sp. (strain ANA-3) GN=rpsQ
PE=3 SV=1
Length = 82
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEEL 203
GKY + T ++AHD C GD+V I E
Sbjct: 35 GKYIKRTTKIHAHDEANQCNEGDVVAIREC 64
>sp|Q8EK60|RS17_SHEON 30S ribosomal protein S17 OS=Shewanella oneidensis (strain MR-1)
GN=rpsQ PE=3 SV=1
Length = 82
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEEL 203
GKY + T ++AHD C GD+V I E
Sbjct: 35 GKYIKRTTKIHAHDEANQCNEGDVVAIREC 64
>sp|A8GYY5|RS17_SHEPA 30S ribosomal protein S17 OS=Shewanella pealeana (strain ATCC
700345 / ANG-SQ1) GN=rpsQ PE=3 SV=1
Length = 82
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEE 202
GK+ + T ++AHD C GDIV I E
Sbjct: 35 GKFIKRTTKIHAHDEQNQCNAGDIVTIRE 63
>sp|P39880|CUX1_HUMAN Homeobox protein cut-like 1 OS=Homo sapiens GN=CUX1 PE=1 SV=3
Length = 1505
Score = 32.7 bits (73), Expect = 3.8, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 5 LRLESRDYVLSFHFFETRLRDDISFQE---RSQGSAKCDLMPTPRSPR-----EREARPH 56
L L++ + FH + +R+R ++ +E SQG A P+ RS R E ++
Sbjct: 1281 LNLKTSTVINWFHNYRSRIRRELFIEEIQAGSQGQAGASDSPSARSGRAAPSSEGDSCDG 1340
Query: 57 AQPRKAPGSA--QRDRKQGSAKRDPMHNPTKPQE 88
+ + PGSA + + QG A+R+ + P + E
Sbjct: 1341 VEATEGPGSADTEEPKSQGEAEREEVPRPAEQTE 1374
>sp|A1REC3|RS17_SHESW 30S ribosomal protein S17 OS=Shewanella sp. (strain W3-18-1)
GN=rpsQ PE=3 SV=1
Length = 82
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEEL 203
GKY + T ++AHD C GD+V I E
Sbjct: 35 GKYIKRTTKIHAHDETNQCNEGDLVAIREC 64
>sp|A4YBX4|RS17_SHEPC 30S ribosomal protein S17 OS=Shewanella putrefaciens (strain CN-32
/ ATCC BAA-453) GN=rpsQ PE=3 SV=1
Length = 82
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEEL 203
GKY + T ++AHD C GD+V I E
Sbjct: 35 GKYIKRTTKIHAHDETNQCNEGDLVAIREC 64
>sp|A9KWB1|RS17_SHEB9 30S ribosomal protein S17 OS=Shewanella baltica (strain OS195)
GN=rpsQ PE=3 SV=1
Length = 82
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEEL 203
GKY + T ++AHD C GD+V I E
Sbjct: 35 GKYIKRTTKIHAHDETNQCNEGDLVAIREC 64
>sp|A6WHT7|RS17_SHEB8 30S ribosomal protein S17 OS=Shewanella baltica (strain OS185)
GN=rpsQ PE=3 SV=1
Length = 82
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEEL 203
GKY + T ++AHD C GD+V I E
Sbjct: 35 GKYIKRTTKIHAHDETNQCNEGDLVAIREC 64
>sp|A3DA63|RS17_SHEB5 30S ribosomal protein S17 OS=Shewanella baltica (strain OS155 /
ATCC BAA-1091) GN=rpsQ PE=3 SV=1
Length = 82
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEEL 203
GKY + T ++AHD C GD+V I E
Sbjct: 35 GKYIKRTTKIHAHDETNQCNEGDLVAIREC 64
>sp|B8EBJ6|RS17_SHEB2 30S ribosomal protein S17 OS=Shewanella baltica (strain OS223)
GN=rpsQ PE=3 SV=1
Length = 82
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEEL 203
GKY + T ++AHD C GD+V I E
Sbjct: 35 GKYIKRTTKIHAHDETNQCNEGDLVAIREC 64
>sp|A4VHN9|RS17_PSEU5 30S ribosomal protein S17 OS=Pseudomonas stutzeri (strain A1501)
GN=rpsQ PE=3 SV=1
Length = 88
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEEL-PQKLT 208
GKY + T ++AHD CK GD V I E PQ T
Sbjct: 38 GKYVKRSTKLHAHDETNQCKIGDKVSIRETRPQSKT 73
>sp|B1JDX5|RS17_PSEPW 30S ribosomal protein S17 OS=Pseudomonas putida (strain W619)
GN=rpsQ PE=3 SV=1
Length = 88
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEE 202
GKY + T ++AHD CK GD V I E
Sbjct: 38 GKYVKRSTKLHAHDESNQCKIGDKVSIRE 66
>sp|B0KK76|RS17_PSEPG 30S ribosomal protein S17 OS=Pseudomonas putida (strain GB-1)
GN=rpsQ PE=3 SV=1
Length = 88
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEE 202
GKY + T ++AHD CK GD V I E
Sbjct: 38 GKYVKRSTKLHAHDESNQCKIGDKVSIRE 66
>sp|Q1IFV7|RS17_PSEE4 30S ribosomal protein S17 OS=Pseudomonas entomophila (strain L48)
GN=rpsQ PE=3 SV=1
Length = 88
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEE 202
GKY + T ++AHD CK GD V I E
Sbjct: 38 GKYVKRSTKLHAHDESNQCKIGDKVSIRE 66
>sp|B1KMX4|RS17_SHEWM 30S ribosomal protein S17 OS=Shewanella woodyi (strain ATCC 51908 /
MS32) GN=rpsQ PE=3 SV=1
Length = 82
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEE 202
GK+ + T ++AHD C GD+V I E
Sbjct: 35 GKFLKRTTKIHAHDEQNQCNAGDVVTIRE 63
>sp|C1DKM2|RS17_AZOVD 30S ribosomal protein S17 OS=Azotobacter vinelandii (strain DJ /
ATCC BAA-1303) GN=rpsQ PE=3 SV=1
Length = 88
Score = 32.3 bits (72), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEE 202
GKY + T ++AHD C+ GD V I E
Sbjct: 38 GKYVKRSTKLHAHDETNQCRIGDTVTIRE 66
>sp|A3Q991|RS17_SHELP 30S ribosomal protein S17 OS=Shewanella loihica (strain ATCC
BAA-1088 / PV-4) GN=rpsQ PE=3 SV=1
Length = 82
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEE 202
GK+ + T ++AHD C GDIV I E
Sbjct: 35 GKFIKRTTKIHAHDETNQCNAGDIVTIRE 63
>sp|Q8PC41|RS17_XANCP 30S ribosomal protein S17 OS=Xanthomonas campestris pv. campestris
(strain ATCC 33913 / NCPPB 528 / LMG 568) GN=rpsQ PE=3
SV=1
Length = 89
Score = 32.3 bits (72), Expect = 4.6, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEEL 203
GKY + + ++AHD D C GD+V + E+
Sbjct: 40 GKYIKRSSKLHAHDADNACNEGDVVRVTEI 69
>sp|B0RU73|RS17_XANCB 30S ribosomal protein S17 OS=Xanthomonas campestris pv. campestris
(strain B100) GN=rpsQ PE=3 SV=1
Length = 89
Score = 32.3 bits (72), Expect = 4.6, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 174 GKYFPKFTVMYAHDPDKICKTGDIVLIEEL 203
GKY + + ++AHD D C GD+V + E+
Sbjct: 40 GKYIKRSSKLHAHDADNACNEGDVVRVTEI 69
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,475,606
Number of Sequences: 539616
Number of extensions: 5408552
Number of successful extensions: 16115
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 15899
Number of HSP's gapped (non-prelim): 255
length of query: 302
length of database: 191,569,459
effective HSP length: 117
effective length of query: 185
effective length of database: 128,434,387
effective search space: 23760361595
effective search space used: 23760361595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)