Query psy13112
Match_columns 302
No_of_seqs 201 out of 437
Neff 3.0
Searched_HMMs 29240
Date Fri Aug 16 19:54:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13112.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13112hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qd7_I S17 ribosomal protein; 99.9 2.3E-22 7.9E-27 159.7 8.0 62 94-156 20-81 (89)
2 3r8n_Q 30S ribosomal protein S 99.9 2.7E-22 9.2E-27 156.3 5.8 60 95-155 21-80 (80)
3 2vqe_Q 30S ribosomal protein S 99.8 1.6E-21 5.6E-26 158.9 8.1 62 94-156 21-82 (105)
4 3bbn_Q Ribosomal protein S17; 99.8 4.9E-21 1.7E-25 163.3 6.9 61 94-155 78-138 (142)
5 3j20_R 30S ribosomal protein S 99.8 3E-20 1E-24 153.2 8.3 61 94-155 49-110 (113)
6 1qd7_I S17 ribosomal protein; 99.8 7.5E-20 2.6E-24 145.3 6.5 54 169-223 27-80 (89)
7 3r8n_Q 30S ribosomal protein S 99.8 8.5E-20 2.9E-24 142.3 4.6 53 169-222 27-79 (80)
8 2xzm_Q Ribosomal protein S17 c 99.8 3.3E-19 1.1E-23 154.1 8.0 59 95-154 86-145 (157)
9 3u5c_L RP41, S18, YS12, 40S ri 99.8 3.8E-19 1.3E-23 153.6 7.4 60 95-155 87-147 (156)
10 2vqe_Q 30S ribosomal protein S 99.8 4.3E-19 1.5E-23 144.6 6.0 54 169-223 28-81 (105)
11 2zkq_q 40S ribosomal protein S 99.8 8E-19 2.7E-23 151.8 6.6 60 95-155 89-150 (158)
12 3bbn_Q Ribosomal protein S17; 99.7 1.4E-18 4.8E-23 148.2 4.9 81 139-223 55-138 (142)
13 3j20_R 30S ribosomal protein S 99.7 5E-18 1.7E-22 140.0 7.0 53 170-223 57-110 (113)
14 3iz6_P 40S ribosomal protein S 99.7 1.3E-18 4.5E-23 150.9 -1.4 59 95-154 88-147 (161)
15 2xzm_Q Ribosomal protein S17 c 99.7 2.8E-17 9.6E-22 142.1 6.7 51 171-222 94-145 (157)
16 3u5c_L RP41, S18, YS12, 40S ri 99.7 2.5E-17 8.4E-22 142.4 6.0 52 171-223 95-147 (156)
17 2zkq_q 40S ribosomal protein S 99.6 7.3E-17 2.5E-21 139.6 5.5 52 171-223 97-150 (158)
18 3iz6_P 40S ribosomal protein S 99.6 9.4E-17 3.2E-21 139.3 -1.1 51 171-222 96-147 (161)
19 3jxo_A TRKA-N domain protein; 65.1 26 0.00088 25.0 7.0 56 145-203 14-72 (86)
20 1p3h_A 10 kDa chaperonin; beta 56.6 31 0.0011 27.4 6.6 61 125-203 7-73 (99)
21 4he6_A Peptidase family U32; u 53.4 17 0.00057 27.2 4.3 45 187-234 25-71 (89)
22 1we3_O CPN10(groes); chaperoni 49.2 12 0.00042 29.9 3.1 66 125-203 10-75 (100)
23 2id0_A Exoribonuclease 2; RNAs 38.7 2.8E+02 0.0096 27.7 11.7 135 121-287 51-200 (644)
24 3l4b_C TRKA K+ channel protien 37.2 96 0.0033 25.3 6.9 25 179-203 180-204 (218)
25 1pcq_O Groes protein; chaperon 37.0 58 0.002 25.8 5.3 59 126-202 6-69 (97)
26 3nx6_A 10KDA chaperonin; bacte 32.1 73 0.0025 25.1 5.1 63 123-203 3-70 (95)
27 1g31_A GP31; chaperone, CO-cha 31.6 12 0.0004 30.6 0.4 64 122-203 8-74 (111)
28 2iie_A Integration HOST factor 29.4 29 0.00099 30.1 2.6 92 125-237 83-174 (204)
29 1hy7_A Stromelysin-1, MMP-3; m 23.8 40 0.0014 27.7 2.3 18 241-258 151-168 (173)
30 4he6_A Peptidase family U32; u 23.6 76 0.0026 23.5 3.6 42 115-159 21-62 (89)
31 4g65_A TRK system potassium up 22.4 3.1E+02 0.01 26.0 8.4 60 159-258 395-458 (461)
32 830c_A MMP-13, MMP-13; matrix 20.2 52 0.0018 27.5 2.3 18 241-258 150-167 (168)
33 3tiw_A Transitional endoplasmi 20.0 1.8E+02 0.006 25.0 5.7 94 123-236 93-186 (187)
No 1
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=99.87 E-value=2.3e-22 Score=159.70 Aligned_cols=62 Identities=19% Similarity=0.116 Sum_probs=59.3
Q ss_pred ceeeeeeeccccceEEeeeceEEeeCCCCCCCCCCEEEEeecCcccccceeEEEeeEEeecCC
Q psy13112 94 YMQPRVANTRNEVRYFPKFTVMYAHDPDKICKTGDIVLIEELPQKLTTLITHKVNKVVYPLGD 156 (302)
Q Consensus 94 ~~VeR~vkHp~YkKy~kKskKY~AHDe~N~cKiGDiVlI~E~PrPLSK~KtW~V~eIV~kaG~ 156 (302)
-.|+|+++||+|+||++++++|+||||+|+|++||+|+|.|| +||||+|+|.|.+|++++..
T Consensus 20 V~ve~~~~hp~Y~K~~kr~kk~~aHDe~n~~k~GD~V~I~E~-RPlSKtK~~~vv~iv~~a~~ 81 (89)
T 1qd7_I 20 VLVETYKKHPLYGKRVKYSKKYKAHDEHNEAKVGDIVKIMET-RPLSATKRFRLVEIVEKAVR 81 (89)
T ss_pred EEEEEEEEcCccceEEeccEEEEEeCCccCCCCCCEEEEEEc-ccCCCCEEEEEEEEEeecee
Confidence 368999999999999999999999999999999999999999 99999999999999998764
No 2
>3r8n_Q 30S ribosomal protein S17; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_Q 3fih_Q* 3iy8_Q 3j18_Q* 2wwl_Q 3oar_Q 3oaq_Q 3ofb_Q 3ofa_Q 3ofp_Q 3ofx_Q 3ofy_Q 3ofo_Q 3r8o_Q 4a2i_Q 4gd1_Q 4gd2_Q 3i1m_Q 1vs7_Q* 3e1a_J ...
Probab=99.86 E-value=2.7e-22 Score=156.34 Aligned_cols=60 Identities=22% Similarity=0.278 Sum_probs=57.6
Q ss_pred eeeeeeeccccceEEeeeceEEeeCCCCCCCCCCEEEEeecCcccccceeEEEeeEEeecC
Q psy13112 95 MQPRVANTRNEVRYFPKFTVMYAHDPDKICKTGDIVLIEELPQKLTTLITHKVNKVVYPLG 155 (302)
Q Consensus 95 ~VeR~vkHp~YkKy~kKskKY~AHDe~N~cKiGDiVlI~E~PrPLSK~KtW~V~eIV~kaG 155 (302)
.|+|+++||+|+||++++++|+||||+|+|++||+|+|.|| +||||+|+|.|.+|++++.
T Consensus 21 ~v~~~~~hp~Y~K~~kr~kk~~aHDe~n~~~~GD~V~I~e~-RPlSKtk~~~v~~i~~~~~ 80 (80)
T 3r8n_Q 21 AIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIREC-RPLSKTKSWTLVRVVEKAV 80 (80)
T ss_dssp ECCEEEEETTTEEEEEECCEEECBCGGGCCCTTCEEEEEEE-EEEETTEEEEEEEEECCCC
T ss_pred EEEEEEEcccccccEEecceEEEECCCCCCCCCCEEEEEEe-ccCCCcEeEEEEEEEEecC
Confidence 46899999999999999999999999999999999999999 9999999999999999863
No 3
>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: b.40.4.5 PDB: 1gix_T* 1hnw_Q* 1hnx_Q* 1hnz_Q* 1hr0_Q 1ibk_Q* 1ibl_Q* 1ibm_Q 1jgo_T* 1jgp_T* 1jgq_T* 1ml5_T* 1xmo_Q* 1xmq_Q* 1xnq_Q* 1xnr_Q* 1yl4_T 2b64_Q* 2b9m_Q* 2b9o_Q* ...
Probab=99.85 E-value=1.6e-21 Score=158.85 Aligned_cols=62 Identities=21% Similarity=0.176 Sum_probs=59.2
Q ss_pred ceeeeeeeccccceEEeeeceEEeeCCCCCCCCCCEEEEeecCcccccceeEEEeeEEeecCC
Q psy13112 94 YMQPRVANTRNEVRYFPKFTVMYAHDPDKICKTGDIVLIEELPQKLTTLITHKVNKVVYPLGD 156 (302)
Q Consensus 94 ~~VeR~vkHp~YkKy~kKskKY~AHDe~N~cKiGDiVlI~E~PrPLSK~KtW~V~eIV~kaG~ 156 (302)
..|+|+++||+|+||++++++|+||||+|+|++||+|+|.|| +||||+|+|.|.+|++++..
T Consensus 21 V~ver~~~hpkY~K~~kr~kk~~aHDe~n~~k~GD~V~I~E~-RPlSKtKr~~vv~iv~~a~~ 82 (105)
T 2vqe_Q 21 VLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIES-RPISKRKRFRVLRLVESGRM 82 (105)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEEEECTTCCCCTTCEEEEEEE-EEEETTEEEEEEEEEECCCH
T ss_pred EEEEEEEEcCccceEEecceEEEEECCCCCCCCCCEEEEEEc-ccCCCCEEEEEEEEeecccc
Confidence 358899999999999999999999999999999999999999 99999999999999998763
No 4
>3bbn_Q Ribosomal protein S17; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=99.83 E-value=4.9e-21 Score=163.33 Aligned_cols=61 Identities=23% Similarity=0.217 Sum_probs=58.8
Q ss_pred ceeeeeeeccccceEEeeeceEEeeCCCCCCCCCCEEEEeecCcccccceeEEEeeEEeecC
Q psy13112 94 YMQPRVANTRNEVRYFPKFTVMYAHDPDKICKTGDIVLIEELPQKLTTLITHKVNKVVYPLG 155 (302)
Q Consensus 94 ~~VeR~vkHp~YkKy~kKskKY~AHDe~N~cKiGDiVlI~E~PrPLSK~KtW~V~eIV~kaG 155 (302)
..|+|+++||+|+||++++++|+||||+|+|++||+|+|.|| +||||+|+|.|++|++++.
T Consensus 78 V~Ver~~~hpkY~K~vkr~kKy~AHDe~n~~kvGD~V~I~E~-RPLSKtKrw~VveIveka~ 138 (142)
T 3bbn_Q 78 VEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKS-RPISKTKSFVALPVIARAA 138 (142)
T ss_dssp EEEEEEEECSSSCSEEEEEEEEEEECTTCCCCTTEEEEEEEC-CCSSSSCCEEECCCSEEEC
T ss_pred EEEEEEEEcCccccEEecceEEEEECCCCCCCCCCEEEEEEc-cCCCCcEEEEEEEEEeccc
Confidence 468999999999999999999999999999999999999999 9999999999999999875
No 5
>3j20_R 30S ribosomal protein S17P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.81 E-value=3e-20 Score=153.21 Aligned_cols=61 Identities=25% Similarity=0.170 Sum_probs=58.5
Q ss_pred ceeeeeeeccccceEEeeeceEEeeCC-CCCCCCCCEEEEeecCcccccceeEEEeeEEeecC
Q psy13112 94 YMQPRVANTRNEVRYFPKFTVMYAHDP-DKICKTGDIVLIEELPQKLTTLITHKVNKVVYPLG 155 (302)
Q Consensus 94 ~~VeR~vkHp~YkKy~kKskKY~AHDe-~N~cKiGDiVlI~E~PrPLSK~KtW~V~eIV~kaG 155 (302)
..|+|+++||+|+||++++++|+|||| +|+|++||+|.|.|| +||||+|+|.|.+|+++|.
T Consensus 49 V~ve~~~~hpkY~K~~kr~kk~~aHDe~~n~~~vGD~V~I~E~-RPlSKtKr~~vv~i~~~a~ 110 (113)
T 3j20_R 49 VERQYYFYLNKYERYELRRSKIHAHNPPCINAKVGDKVLIAET-RPLSKTKHFVVVAVLERAE 110 (113)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEECCTTSCCCTTSEEEEEEC-SCSSSSEEEEEEEECCCCC
T ss_pred EEEEEEEEcCcccEEEECceEEEEECCCCCCCCCCCEEEEEec-ccCCCcEeEEEEEEEeccc
Confidence 467899999999999999999999999 899999999999999 9999999999999999874
No 6
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=99.79 E-value=7.5e-20 Score=145.30 Aligned_cols=54 Identities=26% Similarity=0.203 Sum_probs=51.1
Q ss_pred ceeecceeeeeeeeEEeeCCCCCCCCCCEEEEeecCCCcCcceeEEEEEeeecCC
Q psy13112 169 LRVDLGKYFPKFTVMYAHDPDKICKTGDIVLIEELPQKLTTLITHKVNKVVYPLG 223 (302)
Q Consensus 169 Lrp~y~K~ikRskKY~AHDenN~ckvGDiV~I~Ec~rPLSKtKtW~V~eIV~k~G 223 (302)
..|+|+||++++++|+||||+|+|++||+|+|.|| |||||+|+|.|++|++++.
T Consensus 27 ~hp~Y~K~~kr~kk~~aHDe~n~~k~GD~V~I~E~-RPlSKtK~~~vv~iv~~a~ 80 (89)
T 1qd7_I 27 KHPLYGKRVKYSKKYKAHDEHNEAKVGDIVKIMET-RPLSATKRFRLVEIVEKAV 80 (89)
T ss_pred EcCccceEEeccEEEEEeCCccCCCCCCEEEEEEc-ccCCCCEEEEEEEEEeece
Confidence 34699999999999999999999999999999999 7999999999999999865
No 7
>3r8n_Q 30S ribosomal protein S17; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_Q 3fih_Q* 3iy8_Q 3j18_Q* 2wwl_Q 3oar_Q 3oaq_Q 3ofb_Q 3ofa_Q 3ofp_Q 3ofx_Q 3ofy_Q 3ofo_Q 3r8o_Q 4a2i_Q 4gd1_Q 4gd2_Q 3i1m_Q 1vs7_Q* 3e1a_J ...
Probab=99.78 E-value=8.5e-20 Score=142.27 Aligned_cols=53 Identities=26% Similarity=0.382 Sum_probs=50.8
Q ss_pred ceeecceeeeeeeeEEeeCCCCCCCCCCEEEEeecCCCcCcceeEEEEEeeecC
Q psy13112 169 LRVDLGKYFPKFTVMYAHDPDKICKTGDIVLIEELPQKLTTLITHKVNKVVYPL 222 (302)
Q Consensus 169 Lrp~y~K~ikRskKY~AHDenN~ckvGDiV~I~Ec~rPLSKtKtW~V~eIV~k~ 222 (302)
..|.|+||++++++|+||||+|.|++||+|+|.|| |||||+|+|.|++|++++
T Consensus 27 ~hp~Y~K~~kr~kk~~aHDe~n~~~~GD~V~I~e~-RPlSKtk~~~v~~i~~~~ 79 (80)
T 3r8n_Q 27 KHPIYGKFIKRTTKLHVHDENNECGIGDVVEIREC-RPLSKTKSWTLVRVVEKA 79 (80)
T ss_dssp EETTTEEEEEECCEEECBCGGGCCCTTCEEEEEEE-EEEETTEEEEEEEEECCC
T ss_pred EcccccccEEecceEEEECCCCCCCCCCEEEEEEe-ccCCCcEeEEEEEEEEec
Confidence 45799999999999999999999999999999999 899999999999999986
No 8
>2xzm_Q Ribosomal protein S17 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Q
Probab=99.77 E-value=3.3e-19 Score=154.12 Aligned_cols=59 Identities=19% Similarity=0.191 Sum_probs=56.2
Q ss_pred eeeeeeeccccceEEeeeceEEeeC-CCCCCCCCCEEEEeecCcccccceeEEEeeEEeec
Q psy13112 95 MQPRVANTRNEVRYFPKFTVMYAHD-PDKICKTGDIVLIEELPQKLTTLITHKVNKVVYPL 154 (302)
Q Consensus 95 ~VeR~vkHp~YkKy~kKskKY~AHD-e~N~cKiGDiVlI~E~PrPLSK~KtW~V~eIV~ka 154 (302)
.|+++++||+|+||++++++|+||| |+|+|++||+|+|.|| |||||+|+|.|++|++++
T Consensus 86 ~ve~~~~hpkY~K~vkr~kKy~AHDee~n~~kvGD~V~I~Ec-RPLSKtKrw~Vv~I~~ka 145 (157)
T 2xzm_Q 86 RRDYLHYVRKYNRYEKRHRNIPVHISPCFSVKEGDILVAGQC-RPISKTVRFNALQVVPNE 145 (157)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEECCTTSCCCTTCEEEEEEC-CCCSSSCCEEEEEECCCC
T ss_pred EEEEEEecCccceEeecceeEEEECCCCCCCCCCCEEEEEEc-CCCCCcEEEEEEEEEecc
Confidence 3888999999999999999999999 6899999999999999 999999999999999875
No 9
>3u5c_L RP41, S18, YS12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_P 3o30_F 3o2z_F 3u5g_L 3jyv_Q* 1s1h_Q
Probab=99.77 E-value=3.8e-19 Score=153.63 Aligned_cols=60 Identities=18% Similarity=0.203 Sum_probs=57.3
Q ss_pred eeeeeeeccccceEEeeeceEEeeCC-CCCCCCCCEEEEeecCcccccceeEEEeeEEeecC
Q psy13112 95 MQPRVANTRNEVRYFPKFTVMYAHDP-DKICKTGDIVLIEELPQKLTTLITHKVNKVVYPLG 155 (302)
Q Consensus 95 ~VeR~vkHp~YkKy~kKskKY~AHDe-~N~cKiGDiVlI~E~PrPLSK~KtW~V~eIV~kaG 155 (302)
.|+++.+||+|+||++++++|+|||| +|+|++||+|+|.|| +||||+|+|.|++|++++|
T Consensus 87 ~ve~~~~hpkY~K~vkr~kKy~AHDe~~n~~kvGD~V~I~Ec-RPLSKtKrw~Vv~Iv~ka~ 147 (156)
T 3u5c_L 87 RRAYLHYIPKYNRYEKRHKNVPVHVSPAFRVQVGDIVTVGQC-RPISKTVRFNVVKVSAAAG 147 (156)
T ss_dssp EEEEEEEEGGGTEEEEEEEEEEEECCTTSCCCTTCEEEEEEE-EEEETTEEEEEEEECCCCS
T ss_pred EEEEEeecCccceEEECceEEEEECCCcCcCCCCCEEEEEec-ccCCCcEeEEEEEEEecCC
Confidence 47789999999999999999999998 689999999999999 9999999999999999986
No 10
>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: b.40.4.5 PDB: 1gix_T* 1hnw_Q* 1hnx_Q* 1hnz_Q* 1hr0_Q 1ibk_Q* 1ibl_Q* 1ibm_Q 1jgo_T* 1jgp_T* 1jgq_T* 1ml5_T* 1xmo_Q* 1xmq_Q* 1xnq_Q* 1xnr_Q* 1yl4_T 2b64_Q* 2b9m_Q* 2b9o_Q* ...
Probab=99.76 E-value=4.3e-19 Score=144.64 Aligned_cols=54 Identities=26% Similarity=0.282 Sum_probs=51.0
Q ss_pred ceeecceeeeeeeeEEeeCCCCCCCCCCEEEEeecCCCcCcceeEEEEEeeecCC
Q psy13112 169 LRVDLGKYFPKFTVMYAHDPDKICKTGDIVLIEELPQKLTTLITHKVNKVVYPLG 223 (302)
Q Consensus 169 Lrp~y~K~ikRskKY~AHDenN~ckvGDiV~I~Ec~rPLSKtKtW~V~eIV~k~G 223 (302)
..++|+||++++++|+||||+|+|++||+|+|.|| |||||+|+|.|++|++++.
T Consensus 28 ~hpkY~K~~kr~kk~~aHDe~n~~k~GD~V~I~E~-RPlSKtKr~~vv~iv~~a~ 81 (105)
T 2vqe_Q 28 PHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIES-RPISKRKRFRVLRLVESGR 81 (105)
T ss_dssp ECTTTCCEEEEEEEEEEECTTCCCCTTCEEEEEEE-EEEETTEEEEEEEEEECCC
T ss_pred EcCccceEEecceEEEEECCCCCCCCCCEEEEEEc-ccCCCCEEEEEEEEeeccc
Confidence 34699999999999999999999999999999999 8999999999999999865
No 11
>2zkq_q 40S ribosomal protein S11E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_Q* 1s1h_Q
Probab=99.75 E-value=8e-19 Score=151.84 Aligned_cols=60 Identities=23% Similarity=0.234 Sum_probs=52.9
Q ss_pred eeeeeeeccccceEEeeeceEEeeCCC-C-CCCCCCEEEEeecCcccccceeEEEeeEEeecC
Q psy13112 95 MQPRVANTRNEVRYFPKFTVMYAHDPD-K-ICKTGDIVLIEELPQKLTTLITHKVNKVVYPLG 155 (302)
Q Consensus 95 ~VeR~vkHp~YkKy~kKskKY~AHDe~-N-~cKiGDiVlI~E~PrPLSK~KtW~V~eIV~kaG 155 (302)
.|+++++||+|+||++++++|+||||+ | +|++||+|+|.|| |||||+|+|.|++|+..+|
T Consensus 89 ~ve~~~~hpkY~K~vkr~kKy~AHDe~~n~~~kvGD~V~I~E~-RPLSKtKrw~Vv~I~~~~~ 150 (158)
T 2zkq_q 89 RRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGEC-RPLSKTVRFNVLKVTKAAG 150 (158)
T ss_dssp EEEEECSSTTCCCEEEEEEEECCBCCSSCCCC-CCCEEEEECC-SCSSSCC-CEEEEEEEC--
T ss_pred EEEEEEecCccceeeecceeEEEECCcccCcCCCCCEEEEEEc-cccCCcEEEEEEEEecCCC
Confidence 388899999999999999999999986 4 8999999999999 9999999999999998665
No 12
>3bbn_Q Ribosomal protein S17; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=99.73 E-value=1.4e-18 Score=148.23 Aligned_cols=81 Identities=19% Similarity=0.101 Sum_probs=60.2
Q ss_pred cccceeEEEeeEEeecCCccCCccceeeec---ceeecceeeeeeeeEEeeCCCCCCCCCCEEEEeecCCCcCcceeEEE
Q psy13112 139 LTTLITHKVNKVVYPLGDITDPITGKKVVG---LRVDLGKYFPKFTVMYAHDPDKICKTGDIVLIEELPQKLTTLITHKV 215 (302)
Q Consensus 139 LSK~KtW~V~eIV~kaG~i~DPiTGK~VVG---Lrp~y~K~ikRskKY~AHDenN~ckvGDiV~I~Ec~rPLSKtKtW~V 215 (302)
++-.-+..+..+|-.. .| | .|....|. ..++|+||++++++|+||||+|+|++||+|+|.|| |||||+|+|.|
T Consensus 55 lsvrg~k~l~G~VVS~-KM-d-KTIvV~Ver~~~hpkY~K~vkr~kKy~AHDe~n~~kvGD~V~I~E~-RPLSKtKrw~V 130 (142)
T 3bbn_Q 55 PVIRAMKTMQGRVVCA-TS-D-KTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKS-RPISKTKSFVA 130 (142)
T ss_dssp -----CCEEEEEEEEC-CS-T-TEEEEEEEEEEECSSSCSEEEEEEEEEEECTTCCCCTTEEEEEEEC-CCSSSSCCEEE
T ss_pred ccccceEEEEEEEEEc-cC-C-ceEEEEEEEEEEcCccccEEecceEEEEECCCCCCCCCCEEEEEEc-cCCCCcEEEEE
Confidence 4444423444554442 22 3 55444443 34699999999999999999999999999999999 79999999999
Q ss_pred EEeeecCC
Q psy13112 216 NKVVYPLG 223 (302)
Q Consensus 216 ~eIV~k~G 223 (302)
++|++++.
T Consensus 131 veIveka~ 138 (142)
T 3bbn_Q 131 LPVIARAA 138 (142)
T ss_dssp CCCSEEEC
T ss_pred EEEEeccc
Confidence 99999865
No 13
>3j20_R 30S ribosomal protein S17P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.72 E-value=5e-18 Score=140.03 Aligned_cols=53 Identities=26% Similarity=0.236 Sum_probs=50.2
Q ss_pred eeecceeeeeeeeEEeeCC-CCCCCCCCEEEEeecCCCcCcceeEEEEEeeecCC
Q psy13112 170 RVDLGKYFPKFTVMYAHDP-DKICKTGDIVLIEELPQKLTTLITHKVNKVVYPLG 223 (302)
Q Consensus 170 rp~y~K~ikRskKY~AHDe-nN~ckvGDiV~I~Ec~rPLSKtKtW~V~eIV~k~G 223 (302)
.+.|+||++++++|+|||| +|+|++||+|+|.|| |||||+|+|.|++|++++.
T Consensus 57 hpkY~K~~kr~kk~~aHDe~~n~~~vGD~V~I~E~-RPlSKtKr~~vv~i~~~a~ 110 (113)
T 3j20_R 57 LNKYERYELRRSKIHAHNPPCINAKVGDKVLIAET-RPLSKTKHFVVVAVLERAE 110 (113)
T ss_dssp ETTTTEEEEEEEEEEEECCTTSCCCTTSEEEEEEC-SCSSSSEEEEEEEECCCCC
T ss_pred cCcccEEEECceEEEEECCCCCCCCCCCEEEEEec-ccCCCcEeEEEEEEEeccc
Confidence 3589999999999999999 899999999999999 7999999999999999864
No 14
>3iz6_P 40S ribosomal protein S11 (S17P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.68 E-value=1.3e-18 Score=150.90 Aligned_cols=59 Identities=22% Similarity=0.194 Sum_probs=33.7
Q ss_pred eeeeeeeccccceEEeeeceEEeeCC-CCCCCCCCEEEEeecCcccccceeEEEeeEEeec
Q psy13112 95 MQPRVANTRNEVRYFPKFTVMYAHDP-DKICKTGDIVLIEELPQKLTTLITHKVNKVVYPL 154 (302)
Q Consensus 95 ~VeR~vkHp~YkKy~kKskKY~AHDe-~N~cKiGDiVlI~E~PrPLSK~KtW~V~eIV~ka 154 (302)
.|+++++||+|+||++++++|+|||| +|+|++||+|+|.|| +||||+|+|.|++|++++
T Consensus 88 ~ve~~~~hpkY~K~vkr~kKy~AHDe~~n~~kvGD~V~I~Ec-RPLSKtKrw~Vv~Iv~~~ 147 (161)
T 3iz6_P 88 RRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQC-RPLSKTVRFNVLKVIPAG 147 (161)
T ss_dssp ECTTCCCCSSCEEEEEECCCSSSSCCEEEEECCCCCC------------------------
T ss_pred EEEEEEecCccceEEECceeEEEECCCCCcCCCCCEEEEEec-cCCCCcEeEEEEEEEecC
Confidence 46788999999999999999999998 799999999999999 999999999999999985
No 15
>2xzm_Q Ribosomal protein S17 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Q
Probab=99.68 E-value=2.8e-17 Score=142.08 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=48.6
Q ss_pred eecceeeeeeeeEEeeC-CCCCCCCCCEEEEeecCCCcCcceeEEEEEeeecC
Q psy13112 171 VDLGKYFPKFTVMYAHD-PDKICKTGDIVLIEELPQKLTTLITHKVNKVVYPL 222 (302)
Q Consensus 171 p~y~K~ikRskKY~AHD-enN~ckvGDiV~I~Ec~rPLSKtKtW~V~eIV~k~ 222 (302)
++|+||++|+++|+||| |+|+|++||+|+|.|| |||||+|+|.|++|+.++
T Consensus 94 pkY~K~vkr~kKy~AHDee~n~~kvGD~V~I~Ec-RPLSKtKrw~Vv~I~~ka 145 (157)
T 2xzm_Q 94 RKYNRYEKRHRNIPVHISPCFSVKEGDILVAGQC-RPISKTVRFNALQVVPNE 145 (157)
T ss_dssp TTTTEEEEEEEEEEEECCTTSCCCTTCEEEEEEC-CCCSSSCCEEEEEECCCC
T ss_pred CccceEeecceeEEEECCCCCCCCCCCEEEEEEc-CCCCCcEEEEEEEEEecc
Confidence 68999999999999999 6899999999999999 799999999999999874
No 16
>3u5c_L RP41, S18, YS12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_P 3o30_F 3o2z_F 3u5g_L 3jyv_Q* 1s1h_Q
Probab=99.68 E-value=2.5e-17 Score=142.36 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=49.9
Q ss_pred eecceeeeeeeeEEeeCC-CCCCCCCCEEEEeecCCCcCcceeEEEEEeeecCC
Q psy13112 171 VDLGKYFPKFTVMYAHDP-DKICKTGDIVLIEELPQKLTTLITHKVNKVVYPLG 223 (302)
Q Consensus 171 p~y~K~ikRskKY~AHDe-nN~ckvGDiV~I~Ec~rPLSKtKtW~V~eIV~k~G 223 (302)
+.|+||++++++|+|||| +|.|++||+|+|.|| |||||+|+|.|++|++++|
T Consensus 95 pkY~K~vkr~kKy~AHDe~~n~~kvGD~V~I~Ec-RPLSKtKrw~Vv~Iv~ka~ 147 (156)
T 3u5c_L 95 PKYNRYEKRHKNVPVHVSPAFRVQVGDIVTVGQC-RPISKTVRFNVVKVSAAAG 147 (156)
T ss_dssp GGGTEEEEEEEEEEEECCTTSCCCTTCEEEEEEE-EEEETTEEEEEEEECCCCS
T ss_pred CccceEEECceEEEEECCCcCcCCCCCEEEEEec-ccCCCcEeEEEEEEEecCC
Confidence 689999999999999998 689999999999999 7999999999999999986
No 17
>2zkq_q 40S ribosomal protein S11E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_Q* 1s1h_Q
Probab=99.65 E-value=7.3e-17 Score=139.62 Aligned_cols=52 Identities=23% Similarity=0.270 Sum_probs=45.3
Q ss_pred eecceeeeeeeeEEeeCCC-C-CCCCCCEEEEeecCCCcCcceeEEEEEeeecCC
Q psy13112 171 VDLGKYFPKFTVMYAHDPD-K-ICKTGDIVLIEELPQKLTTLITHKVNKVVYPLG 223 (302)
Q Consensus 171 p~y~K~ikRskKY~AHDen-N-~ckvGDiV~I~Ec~rPLSKtKtW~V~eIV~k~G 223 (302)
++|+||++|+++|+||||+ | +|++||+|+|.|| |||||+|+|.|++|+...|
T Consensus 97 pkY~K~vkr~kKy~AHDe~~n~~~kvGD~V~I~E~-RPLSKtKrw~Vv~I~~~~~ 150 (158)
T 2zkq_q 97 RKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGEC-RPLSKTVRFNVLKVTKAAG 150 (158)
T ss_dssp TTCCCEEEEEEEECCBCCSSCCCC-CCCEEEEECC-SCSSSCC-CEEEEEEEC--
T ss_pred CccceeeecceeEEEECCcccCcCCCCCEEEEEEc-cccCCcEEEEEEEEecCCC
Confidence 6899999999999999986 4 7999999999999 7999999999999998654
No 18
>3iz6_P 40S ribosomal protein S11 (S17P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.58 E-value=9.4e-17 Score=139.31 Aligned_cols=51 Identities=24% Similarity=0.234 Sum_probs=26.9
Q ss_pred eecceeeeeeeeEEeeCC-CCCCCCCCEEEEeecCCCcCcceeEEEEEeeecC
Q psy13112 171 VDLGKYFPKFTVMYAHDP-DKICKTGDIVLIEELPQKLTTLITHKVNKVVYPL 222 (302)
Q Consensus 171 p~y~K~ikRskKY~AHDe-nN~ckvGDiV~I~Ec~rPLSKtKtW~V~eIV~k~ 222 (302)
+.|+||++++++|+|||| +|.|++||+|+|.|| |||||+|+|.|++|++++
T Consensus 96 pkY~K~vkr~kKy~AHDe~~n~~kvGD~V~I~Ec-RPLSKtKrw~Vv~Iv~~~ 147 (161)
T 3iz6_P 96 KKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQC-RPLSKTVRFNVLKVIPAG 147 (161)
T ss_dssp SSCEEEEEECCCSSSSCCEEEEECCCCCC------------------------
T ss_pred CccceEEECceeEEEECCCCCcCCCCCEEEEEec-cCCCCcEeEEEEEEEecC
Confidence 689999999999999998 799999999999999 799999999999999984
No 19
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=65.05 E-value=26 Score=24.96 Aligned_cols=56 Identities=18% Similarity=0.137 Sum_probs=35.2
Q ss_pred EEEeeEEeecCCccCCccceeeecceeecc---eeeeeeeeEEeeCCCCCCCCCCEEEEeec
Q psy13112 145 HKVNKVVYPLGDITDPITGKKVVGLRVDLG---KYFPKFTVMYAHDPDKICKTGDIVLIEEL 203 (302)
Q Consensus 145 W~V~eIV~kaG~i~DPiTGK~VVGLrp~y~---K~ikRskKY~AHDenN~ckvGDiV~I~Ec 203 (302)
..+.++.-..+. |..||.+..++--.+ --+.|......-+.+.....||++.+.-.
T Consensus 14 ~~l~e~~v~~~s---~~~Gk~l~el~~~~~~~i~~I~R~~~~~~p~~~~~l~~GD~l~v~g~ 72 (86)
T 3jxo_A 14 IEFLSVNVEEDS---PVVGKKLKDLPLPRDSIIAAIVRGGVLVVPRGDTEILSGDKLYVIVS 72 (86)
T ss_dssp EEEEEEECCTTC---TTTTCBGGGSCCCSSEEEEEEEETTEEECCCTTCBCCTTCEEEEEEE
T ss_pred cEEEEEEECCCC---ccccCCHHHCCCCCCCEEEEEEECCEEECCCCCCEECCCCEEEEEEC
Confidence 455555555444 677777776652111 12345555556677888999999998866
No 20
>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A
Probab=56.61 E-value=31 Score=27.44 Aligned_cols=61 Identities=23% Similarity=0.220 Sum_probs=34.2
Q ss_pred CCCCEEEEeecCcccccceeEEEeeEEeecCCccCCccceeeecceeecceeeeeeeeEEeeCCC------CCCCCCCEE
Q psy13112 125 KTGDIVLIEELPQKLTTLITHKVNKVVYPLGDITDPITGKKVVGLRVDLGKYFPKFTVMYAHDPD------KICKTGDIV 198 (302)
Q Consensus 125 KiGDiVlI~E~PrPLSK~KtW~V~eIV~kaG~i~DPiTGK~VVGLrp~y~K~ikRskKY~AHDen------N~ckvGDiV 198 (302)
-.||.|+|+-. ..-.+++.= |+-+...-.-|.+|+.|..+.- .+ +++ ..+++||+|
T Consensus 7 PL~DRVlVk~~-e~e~kT~gG----I~LP~sakeKp~~G~VvAVG~G-----------~~--~~~G~~~~p~~VkvGD~V 68 (99)
T 1p3h_A 7 PLEDKILVQAN-EAETTTASG----LVIPDTAKEKPQEGTVVAVGPG-----------RW--DEDGEKRIPLDVAEGDTV 68 (99)
T ss_dssp ECTTEEEEEEC-CCCCBCTTS----CBCCCSSCCSEEEEEEEEECCC-----------EE--CSSSSCEECCSCCTTCEE
T ss_pred EeCCEEEEEEc-cccccccce----EEeCcccccCCceEEEEEECCC-----------cC--cCCCCEEEccccCCCCEE
Confidence 36999999877 433444322 2222111123555665555541 11 222 259999999
Q ss_pred EEeec
Q psy13112 199 LIEEL 203 (302)
Q Consensus 199 ~I~Ec 203 (302)
++.+-
T Consensus 69 lf~ky 73 (99)
T 1p3h_A 69 IYSKY 73 (99)
T ss_dssp EEECT
T ss_pred EECCc
Confidence 99875
No 21
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=53.37 E-value=17 Score=27.17 Aligned_cols=45 Identities=18% Similarity=0.058 Sum_probs=34.2
Q ss_pred CCCCCCCCCCEEEEeecCCCcCcceeEEEEEeeecCCCccC--CCCCcee
Q psy13112 187 DPDKICKTGDIVLIEELPQKLTTLITHKVNKVVYPLGDITD--PITGKKV 234 (302)
Q Consensus 187 DenN~ckvGDiV~I~Ec~rPLSKtKtW~V~eIV~k~G~iiD--PVTgK~v 234 (302)
...|...+||.|+|. .|=-.+..+.|.++....|+.+| |--|..|
T Consensus 25 e~rN~f~~GD~iEi~---~P~g~~~~~~v~~m~d~~G~~i~~A~~~~~~v 71 (89)
T 4he6_A 25 QQRNHFRPGDEVEFF---GPEIENFTQVIEKIWDEDGNELDAARHPLQIV 71 (89)
T ss_dssp EESSCBCTTCEEEEE---STTSCCEEEECCCEEETTSCEESCBCSTTCEE
T ss_pred EEcCCcCCCCEEEEE---cCCCCcEEEEeHHeEcCCCCEeeEcCCCCeEE
Confidence 445899999999987 35455677889899888899887 4455555
No 22
>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A
Probab=49.20 E-value=12 Score=29.91 Aligned_cols=66 Identities=20% Similarity=0.222 Sum_probs=37.0
Q ss_pred CCCCEEEEeecCcccccceeEEEeeEEeecCCccCCccceeeecceeecceeeeeeeeEEeeCCCCCCCCCCEEEEeec
Q psy13112 125 KTGDIVLIEELPQKLTTLITHKVNKVVYPLGDITDPITGKKVVGLRVDLGKYFPKFTVMYAHDPDKICKTGDIVLIEEL 203 (302)
Q Consensus 125 KiGDiVlI~E~PrPLSK~KtW~V~eIV~kaG~i~DPiTGK~VVGLrp~y~K~ikRskKY~AHDenN~ckvGDiV~I~Ec 203 (302)
-.||.|+|+-. ..-.+++.= |+-+..--.-|.+|+.|..+.- +.. ..-+.. ...+++||.|++.+-
T Consensus 10 PL~DRVlVk~~-e~e~kT~gG----I~LP~sakeKp~~G~VvAVG~G---~~~-~~G~~~----p~~VkvGD~Vlf~ky 75 (100)
T 1we3_O 10 PLGDRVVVKRI-EEEPKTKGG----IVLPDTAKEKPQKGKVIAVGTG---RVL-ENGQRV----PLEVKEGDIVVFAKY 75 (100)
T ss_dssp ECTTCEEEEEC-CCCSSCTTC----CCCCTTTSCCCSEEEESCCCCC---EEC-TTSCEE----CCSCCTTCEEEECTT
T ss_pred EeCCEEEEEEc-cccccccce----EEeCcccccCCcCCEEEEECCC---cCC-CCCCEE----eeecCCCCEEEECCC
Confidence 37999999977 444455432 3333222234677777776652 110 000000 135899999999875
No 23
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=38.71 E-value=2.8e+02 Score=27.75 Aligned_cols=135 Identities=12% Similarity=-0.063 Sum_probs=74.2
Q ss_pred CCCCCCCCEEEEeecCcccccceeEEEeeEEeecCCccCCccceeee--------cceeecceeeeeeeeEEeeCCCCCC
Q psy13112 121 DKICKTGDIVLIEELPQKLTTLITHKVNKVVYPLGDITDPITGKKVV--------GLRVDLGKYFPKFTVMYAHDPDKIC 192 (302)
Q Consensus 121 ~N~cKiGDiVlI~E~PrPLSK~KtW~V~eIV~kaG~i~DPiTGK~VV--------GLrp~y~K~ikRskKY~AHDenN~c 192 (302)
-|.+--||+|+++-++. ....-=+|++|++++-.- +-|.-.. -.++.+. .+..-...+.+
T Consensus 51 ~~~a~~GD~V~v~i~~~--~~~~eg~v~~iler~~~~---~vg~~~~~~~~~~v~pdd~~~~-------~~i~~~~~~~~ 118 (644)
T 2id0_A 51 MKKVMHGDRIIAVIHSE--KERESAEPEELVEPFLTR---FVGKVQGKNDRLAIVPDHPLLK-------DAIPCRAARGL 118 (644)
T ss_dssp HTTSCTTCEEEEEEECC--SSSCEEEEEEEEECSCSE---EEEEEEEETTEEEEEESSTTCC-------SCEECCBCSSC
T ss_pred HhcCCCCCEEEEEEecC--CCCeEEEEEEEEecCCCE---EEEEEEEeCCEEEEEECCCCcc-------ccccccccccc
Confidence 47788899999987732 122345788888875431 2332211 1111111 12222223344
Q ss_pred ----CCCCEEEEeecCCCcCcceeEEEEEeeecCCCccCCCCCceeeccccccccHHHHHHHHHHhcCCCCCCcccC--C
Q psy13112 193 ----KTGDIVLIEELPQKLTTLITHKVNKVVYPLGDITDPITGKKVVGLRTAVLTADFYKELYELYGKNPQRKFDYK--K 266 (302)
Q Consensus 193 ----kvGDiV~I~Ec~rPLSKtKtW~V~eIV~k~G~iiDPVTgK~vv~~~Y~~~~~D~i~~~~~l~g~~~~~~f~y~--k 266 (302)
+.||+|.++=.++|+....- -.-+|++..|..-||- -|++.+-..||-.. .|-=. +
T Consensus 119 ~~~~~~g~~v~v~i~~~p~~~~~p-~~g~i~~~LG~~~d~~---------------~e~~~~l~~~~l~~--~fp~~~~~ 180 (644)
T 2id0_A 119 NHEFKEGDWAVAEMRRHPLKGDRS-FYAELTQYITFGDDHF---------------VPWWVTLARHNLEK--EAPDGVAT 180 (644)
T ss_dssp CCCCCSSCEEEEEEEECGGGTCSS-CEEEEEEEEECTTCTT---------------HHHHHHHHHTTCCC--SCCCCCCC
T ss_pred cccCCCCCEEEEEEecCcCCCCCC-ceEEEEEEeCCCCCcc---------------chHHHHHHHcCCCC--CCChHHhh
Confidence 89999998766567653322 1566777777777774 45666666666443 22100 0
Q ss_pred -CCCCCcccccccCCCccceEe
Q psy13112 267 -APRRGWQEDKKDFTHRESYIR 287 (302)
Q Consensus 267 -a~~rg~~e~~~dfth~~~y~k 287 (302)
.+.- ..+-+||++...|.=
T Consensus 181 ~~~~~--~~~R~Dlr~l~~~TI 200 (644)
T 2id0_A 181 EMLDE--GLVREDLTALDFVTI 200 (644)
T ss_dssp CCCCS--CCCCCCCCSSCCBEE
T ss_pred cCCcc--cccceeccCCcEEEE
Confidence 1111 257789999877754
No 24
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=37.23 E-value=96 Score=25.33 Aligned_cols=25 Identities=16% Similarity=0.088 Sum_probs=18.7
Q ss_pred eeeeEEeeCCCCCCCCCCEEEEeec
Q psy13112 179 KFTVMYAHDPDKICKTGDIVLIEEL 203 (302)
Q Consensus 179 RskKY~AHDenN~ckvGDiV~I~Ec 203 (302)
|...+..-+++-....||++.+.-.
T Consensus 180 R~~~~~~p~~~~~l~~gD~l~v~g~ 204 (218)
T 3l4b_C 180 RGGVLVVPRGDTEILSGDKLYVIVS 204 (218)
T ss_dssp ESSCEECCCTTCBCCTTEEEEEEEE
T ss_pred ECCEEEcCCCCCEECCCCEEEEEEC
Confidence 4444555677888999999998866
No 25
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O
Probab=37.05 E-value=58 Score=25.78 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=35.5
Q ss_pred CCCEEEEeecCcccccceeEEEeeEEeecCCccCCccceeeecceeecceeeeeeeeEEeeCCC-----CCCCCCCEEEE
Q psy13112 126 TGDIVLIEELPQKLTTLITHKVNKVVYPLGDITDPITGKKVVGLRVDLGKYFPKFTVMYAHDPD-----KICKTGDIVLI 200 (302)
Q Consensus 126 iGDiVlI~E~PrPLSK~KtW~V~eIV~kaG~i~DPiTGK~VVGLrp~y~K~ikRskKY~AHDen-----N~ckvGDiV~I 200 (302)
.||.|+|+-. ..-.+++.= |+-+...-.-|.+|+.|..+.- +. +++ ..+++||+|++
T Consensus 6 L~DRVlVk~~-e~e~kT~gG----I~LP~sakeKp~~G~VvAVG~G---~~----------~~~G~~~p~~VkvGD~Vlf 67 (97)
T 1pcq_O 6 LHDRVIVKRK-EVETKSAGG----IVLTGSAAAKSTRGEVLAVGNG---RI----------LENGEVKPLDVKVGDIVIF 67 (97)
T ss_dssp CSSEEEEEEC-CTTCTTTTS----SCCCCCCSCCCCEEEEEEECSE---EC----------TTSSSCEECSCCTTCEEEE
T ss_pred cCCEEEEEEc-cccccccce----EEeCcccccCCcccEEEEEcCc---ee----------cCCCCEEecccCCCCEEEE
Confidence 6899999987 444555432 2222221223667777776662 11 222 24899999999
Q ss_pred ee
Q psy13112 201 EE 202 (302)
Q Consensus 201 ~E 202 (302)
.+
T Consensus 68 ~k 69 (97)
T 1pcq_O 68 ND 69 (97)
T ss_dssp CC
T ss_pred CC
Confidence 87
No 26
>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0
Probab=32.11 E-value=73 Score=25.11 Aligned_cols=63 Identities=19% Similarity=0.146 Sum_probs=31.6
Q ss_pred CCCCCCEEEEeecCcccccceeEEEeeEEeecCCccCCccceeeecceeecceeeeeeeeEEeeCCC-----CCCCCCCE
Q psy13112 123 ICKTGDIVLIEELPQKLTTLITHKVNKVVYPLGDITDPITGKKVVGLRVDLGKYFPKFTVMYAHDPD-----KICKTGDI 197 (302)
Q Consensus 123 ~cKiGDiVlI~E~PrPLSK~KtW~V~eIV~kaG~i~DPiTGK~VVGLrp~y~K~ikRskKY~AHDen-----N~ckvGDi 197 (302)
.--.||.|+|+-. ..=++++.= |+-+...-.-|.+|+.|..+.- +. +++ ...++||.
T Consensus 3 i~PL~DRVlVk~~-e~e~kT~gG----I~LP~~a~eK~~~G~VvAVG~G---~~----------~~~G~~~p~~VkvGD~ 64 (95)
T 3nx6_A 3 IKPLHDRVVVKPI-EADEVSAGG----IVIPDSAKEKSTKGEVVAIGAG---KP----------LDNGSLHAPVVKVGDK 64 (95)
T ss_dssp CCCCTTEEEEEEC------------------------CEEEEEEEECSC---EE----------CTTSCEECCSCCTTCE
T ss_pred eEEcCCEEEEEEc-cccccccce----EEeCccccCCccccEEEEECCC---eE----------CCCCCEEccccCCCCE
Confidence 3457999999977 444555443 3323222223777877777662 11 222 26899999
Q ss_pred EEEeec
Q psy13112 198 VLIEEL 203 (302)
Q Consensus 198 V~I~Ec 203 (302)
|++.+-
T Consensus 65 Vl~~ky 70 (95)
T 3nx6_A 65 VIYGQY 70 (95)
T ss_dssp EEECTT
T ss_pred EEECCc
Confidence 999875
No 27
>1g31_A GP31; chaperone, CO-chaperonin, groes, in VIVO protein folding, bacteriophage T4; 2.30A {Enterobacteria phage T4} SCOP: b.35.1.1 PDB: 2cgt_O
Probab=31.56 E-value=12 Score=30.65 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=37.7
Q ss_pred CCCCCCCEEEEeecCc---ccccceeEEEeeEEeecCCccCCccceeeecceeecceeeeeeeeEEeeCCCCCCCCCCEE
Q psy13112 122 KICKTGDIVLIEELPQ---KLTTLITHKVNKVVYPLGDITDPITGKKVVGLRVDLGKYFPKFTVMYAHDPDKICKTGDIV 198 (302)
Q Consensus 122 N~cKiGDiVlI~E~Pr---PLSK~KtW~V~eIV~kaG~i~DPiTGK~VVGLrp~y~K~ikRskKY~AHDenN~ckvGDiV 198 (302)
|.--.||.|+|+-... -=.++..+.+.---. ++. =|..|+.|..+.-. +...+++||.|
T Consensus 8 ~ikPL~drVlvk~~~~~~~~E~kT~sGIilp~~a-ake--kp~~g~VvAVG~g~---------------~~~~vKvGD~V 69 (111)
T 1g31_A 8 PIRAVGEYVILVSEPAQAGDEEVTESGLIIGKRV-QGE--VPELCVVHSVGPDV---------------PEGFCEVGDLT 69 (111)
T ss_dssp SCEECTTEEEEEECSSCGGGCTTSCTTCCCCHHH-HHH--SEEEEEEEEECTTS---------------CTTSCCTTCEE
T ss_pred CceecCCEEEEEEcccCCCcceEcCCcEEeCCCc-ccc--CCceEEEEEECCCC---------------ccccccCCCEE
Confidence 3445799999987621 124555543321100 122 26777777766621 44669999999
Q ss_pred EEeec
Q psy13112 199 LIEEL 203 (302)
Q Consensus 199 ~I~Ec 203 (302)
++.+-
T Consensus 70 l~~kg 74 (111)
T 1g31_A 70 SLPVG 74 (111)
T ss_dssp EEEGG
T ss_pred EECCC
Confidence 99753
No 28
>2iie_A Integration HOST factor; DNA kinking, bending, U-turn, intercalation, divalent, metal, recombination/DNA complex; HET: DNA; 2.41A {Escherichia coli} PDB: 2iif_A*
Probab=29.42 E-value=29 Score=30.13 Aligned_cols=92 Identities=15% Similarity=0.100 Sum_probs=54.2
Q ss_pred CCCCEEEEeecCcccccceeEEEeeEEeecCCccCCccceeeecceeecceeeeeeeeEEeeCCCCCCCCCCEEEEeecC
Q psy13112 125 KTGDIVLIEELPQKLTTLITHKVNKVVYPLGDITDPITGKKVVGLRVDLGKYFPKFTVMYAHDPDKICKTGDIVLIEELP 204 (302)
Q Consensus 125 KiGDiVlI~E~PrPLSK~KtW~V~eIV~kaG~i~DPiTGK~VVGLrp~y~K~ikRskKY~AHDenN~ckvGDiV~I~Ec~ 204 (302)
.-|+.|.|... =+|.+..--.+-|. +|.||+.|.-- +-..=.|+=++.+ -+.-|...-|+.|.|...
T Consensus 83 ~~G~~V~L~Gf-------GtF~v~~r~aR~gr--NP~Tge~i~Ip-a~~~v~Fkp~k~L--k~~vnaL~~G~~V~l~gF- 149 (204)
T 2iie_A 83 ENGEQVKLSGF-------GNFDLRDKNQRPGR--NPKTGEDIPIT-ARRVVTFRPGQKL--KSRVENAGGGERIEIRGF- 149 (204)
T ss_dssp HTTCEEEETTT-------EEEEEEEECCBCCB--CTTTCCBCCBC-CEEEEEEEECHHH--HHHHHHHCCCCCEEETTT-
T ss_pred hCCCeEEecCC-------EEEEEEEecCcccc--CCCCCCeEEec-CcceEEEEecchh--hhhhhhhhhcccceeccc-
Confidence 45888888877 36777654444444 89999977631 1111112212211 122345677999999876
Q ss_pred CCcCcceeEEEEEeeecCCCccCCCCCceeecc
Q psy13112 205 QKLTTLITHKVNKVVYPLGDITDPITGKKVVGL 237 (302)
Q Consensus 205 rPLSKtKtW~V~eIV~k~G~iiDPVTgK~vv~~ 237 (302)
=+|.+.+- ++..-.+|-||..|...
T Consensus 150 ------G~F~~~~r--~~r~grNP~Tge~i~i~ 174 (204)
T 2iie_A 150 ------GSFSLHYR--APRTGRNPKTGDKVELE 174 (204)
T ss_dssp ------EEEEEEEE--CCEEEECTTTCCEEEEC
T ss_pred ------cceeEeec--ccccccCCCCCCEEeec
Confidence 25555543 33344689999998654
No 29
>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP: d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A 1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A* 1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A* 1ciz_A* ...
Probab=23.80 E-value=40 Score=27.74 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=16.6
Q ss_pred cccHHHHHHHHHHhcCCC
Q psy13112 241 VLTADFYKELYELYGKNP 258 (302)
Q Consensus 241 ~~~~D~i~~~~~l~g~~~ 258 (302)
.|+.|||..++.|||.++
T Consensus 151 ~l~~~Di~~iq~lYg~~~ 168 (173)
T 1hy7_A 151 RLSQDDINGIQSLYGPPP 168 (173)
T ss_dssp CCCHHHHHHHHHHHCSCC
T ss_pred CCCHHHHHHHHHHhCcCC
Confidence 689999999999999885
No 30
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=23.63 E-value=76 Score=23.49 Aligned_cols=42 Identities=17% Similarity=0.090 Sum_probs=27.8
Q ss_pred EEeeCCCCCCCCCCEEEEeecCcccccceeEEEeeEEeecCCccC
Q psy13112 115 MYAHDPDKICKTGDIVLIEELPQKLTTLITHKVNKVVYPLGDITD 159 (302)
Q Consensus 115 Y~AHDe~N~cKiGDiVlI~E~PrPLSK~KtW~V~eIV~kaG~i~D 159 (302)
...-.-.|...+||.|+|. .|=-....+.|.++....|..+|
T Consensus 21 ~~~ie~rN~f~~GD~iEi~---~P~g~~~~~~v~~m~d~~G~~i~ 62 (89)
T 4he6_A 21 IATVQQRNHFRPGDEVEFF---GPEIENFTQVIEKIWDEDGNELD 62 (89)
T ss_dssp EEEEEESSCBCTTCEEEEE---STTSCCEEEECCCEEETTSCEES
T ss_pred EEEEEEcCCcCCCCEEEEE---cCCCCcEEEEeHHeEcCCCCEee
Confidence 3334568999999999987 23233556777777656666444
No 31
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=22.41 E-value=3.1e+02 Score=25.96 Aligned_cols=60 Identities=12% Similarity=0.289 Sum_probs=42.5
Q ss_pred CCccceeeeccee----ecceeeeeeeeEEeeCCCCCCCCCCEEEEeecCCCcCcceeEEEEEeeecCCCccCCCCCcee
Q psy13112 159 DPITGKKVVGLRV----DLGKYFPKFTVMYAHDPDKICKTGDIVLIEELPQKLTTLITHKVNKVVYPLGDITDPITGKKV 234 (302)
Q Consensus 159 DPiTGK~VVGLrp----~y~K~ikRskKY~AHDenN~ckvGDiV~I~Ec~rPLSKtKtW~V~eIV~k~G~iiDPVTgK~v 234 (302)
-|++||++..++- .+.- |.|-.+...=+.+.....||.|.|--+.
T Consensus 395 S~~vGk~l~dl~lp~g~~I~a-I~R~~~~iiP~gdt~i~~gD~vivf~~~------------------------------ 443 (461)
T 4g65_A 395 SKVVGRAVGDIKLPPGTTIGA-IVRGEEVLIAHDRTVIEQDDHVVMFLVD------------------------------ 443 (461)
T ss_dssp CSSTTSBGGGSCCCTTEEEEE-EEETTEEEECCTTCBCCTTCEEEEEESC------------------------------
T ss_pred CccCCcCHHHCCCCCCcEEEE-EEECCEEEcCCCCCEECCCCEEEEEEcC------------------------------
Confidence 4789999888762 2333 3455556666678889999988775442
Q ss_pred eccccccccHHHHHHHHHHhcCCC
Q psy13112 235 VGLRTAVLTADFYKELYELYGKNP 258 (302)
Q Consensus 235 v~~~Y~~~~~D~i~~~~~l~g~~~ 258 (302)
.+.++++.+||....
T Consensus 444 ---------~~~i~~ve~lF~~~~ 458 (461)
T 4g65_A 444 ---------KKYVPDVEALFQPSP 458 (461)
T ss_dssp ---------GGGHHHHHHHHCCSS
T ss_pred ---------HHHHHHHHHHcCCCc
Confidence 678999999997765
No 32
>830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo sapiens} SCOP: d.92.1.11 PDB: 456c_A* 1you_A* 4a7b_A* 3tvc_A* 1eub_A* 1xuc_A* 1xud_A* 1xur_A* 2yig_A* 3elm_A* 3i7g_A* 3i7i_A* 3zxh_A* 2ow9_A* 2ozr_A* 3kek_A* 3kej_A* 3kec_A* 2d1n_A* 1fls_A* ...
Probab=20.16 E-value=52 Score=27.52 Aligned_cols=18 Identities=28% Similarity=0.445 Sum_probs=16.5
Q ss_pred cccHHHHHHHHHHhcCCC
Q psy13112 241 VLTADFYKELYELYGKNP 258 (302)
Q Consensus 241 ~~~~D~i~~~~~l~g~~~ 258 (302)
.|+.|||.-++.|||+.+
T Consensus 150 ~l~~dDi~~i~~lYg~~~ 167 (168)
T 830c_A 150 MLPDDDVQGIQSLYGPGD 167 (168)
T ss_dssp CCCHHHHHHHHHHHCCCC
T ss_pred CCCHHHHHHHHHHcCCCC
Confidence 799999999999999765
No 33
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=20.05 E-value=1.8e+02 Score=25.02 Aligned_cols=94 Identities=26% Similarity=0.299 Sum_probs=47.6
Q ss_pred CCCCCCEEEEeecCcccccceeEEEeeEEeecCCccCCccceeeecceeecceeeeeeeeEEeeCCCCCCCCCCEEEEee
Q psy13112 123 ICKTGDIVLIEELPQKLTTLITHKVNKVVYPLGDITDPITGKKVVGLRVDLGKYFPKFTVMYAHDPDKICKTGDIVLIEE 202 (302)
Q Consensus 123 ~cKiGDiVlI~E~PrPLSK~KtW~V~eIV~kaG~i~DPiTGK~VVGLrp~y~K~ikRskKY~AHDenN~ckvGDiV~I~E 202 (302)
...+||+|.|+.++ .+..-++=.| .+..+-+..++|. .+..+++.++.. ..--...||+|.|.-
T Consensus 93 gV~iGD~V~V~~~~-~v~~A~~V~L----aP~~~~i~~i~~~---~~~~~lk~~l~~--------~~rpV~~GD~i~v~~ 156 (187)
T 3tiw_A 93 RVRLGDVISIQPCP-DVKYGKRIHV----LPIDDTVEGITGN---LFEVYLKPYFLE--------AYRPIRKGDIFLVRG 156 (187)
T ss_dssp TCCTTCEEEEEECT-TCEECSEEEE----EECCCC-----CC---HHHHTHHHHHTT--------TCCEEETTCEEEEEC
T ss_pred CCCCCCEEEEEECC-CCCCceEEEE----eccccchhhccch---hHHHHHHHHhcc--------CCceeeCCCEEEEcc
Confidence 46789999999983 2222222112 2322211112221 123334444321 112335799998873
Q ss_pred cCCCcCcceeEEEEEeeecCCCccCCCCCceeec
Q psy13112 203 LPQKLTTLITHKVNKVVYPLGDITDPITGKKVVG 236 (302)
Q Consensus 203 c~rPLSKtKtW~V~eIV~k~G~iiDPVTgK~vv~ 236 (302)
. .+...++|+++-=..-.+|.|-|--.|.|
T Consensus 157 ~----~~~v~f~Vv~t~P~~~v~V~~~T~I~~eg 186 (187)
T 3tiw_A 157 G----MRAVEFKVVETDPSPYCIVAPDTVIHCEG 186 (187)
T ss_dssp S----SSEEEEEEEEEESSSEEECCTTCEEECCC
T ss_pred C----CCEEEEEEEEecCCCCEEECCCcEEEecC
Confidence 2 45677888886433336777777665544
Done!