RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13112
         (302 letters)



>d2uubq1 b.40.4.5 (Q:2-101) Ribosomal protein S17 {Thermus
           thermophilus [TaxId: 274]}
          Length = 100

 Score = 38.2 bits (89), Expect = 1e-04
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 173 LGKYFPKFTVMYAHDPDKICKTGDIVLIEELPQKLTTLITHKVNKVV 219
            GK   +     AHDP++  K GD+V I E    ++     +V ++V
Sbjct: 31  YGKVIKRSKKYLAHDPEEKYKLGDVVEIIESR-PISKRKRFRVLRLV 76



 Score = 35.5 bits (82), Expect = 0.001
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 107 RYFPKFTVMYAHDPDKICKTGDIVLIEELPQKLTTLITHKVNKVV 151
           +   +     AHDP++  K GD+V I E    ++     +V ++V
Sbjct: 33  KVIKRSKKYLAHDPEEKYKLGDVVEIIESR-PISKRKRFRVLRLV 76


>d2gy9q1 b.40.4.5 (Q:5-82) Ribosomal protein S17 {Escherichia coli
           [TaxId: 562]}
          Length = 78

 Score = 36.2 bits (84), Expect = 4e-04
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 173 LGKYFPKFTVMYAHDPDKICKTGDIVLIEELPQKLTTLITHKVNKVV 219
            GK+  + T ++ HD +  C  GD+V I E    L+   +  + +VV
Sbjct: 29  YGKFIKRTTKLHVHDENNECGIGDVVEIRECR-PLSKTKSWTLVRVV 74



 Score = 33.1 bits (76), Expect = 0.005
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 107 RYFPKFTVMYAHDPDKICKTGDIVLIEELPQKLTTLITHKVNKVV 151
           ++  + T ++ HD +  C  GD+V I E    L+   +  + +VV
Sbjct: 31  KFIKRTTKLHVHDENNECGIGDVVEIRECR-PLSKTKSWTLVRVV 74


>d1ripa_ b.40.4.5 (A:) Ribosomal protein S17 {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 81

 Score = 35.4 bits (82), Expect = 8e-04
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 173 LGKYFPKFTVMYAHDPDKICKTGDIVLIEELPQKLTTLITHKVNKVV 219
            GK         AHD     K GDIV I E    L+     ++ ++V
Sbjct: 31  YGKRVKYSKKYKAHDEHNEAKVGDIVKIMETR-PLSATKRFRLVEIV 76



 Score = 32.3 bits (74), Expect = 0.010
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 107 RYFPKFTVMYAHDPDKICKTGDIVLIEELPQKLTTLITHKVNKVV 151
           +         AHD     K GDIV I E    L+     ++ ++V
Sbjct: 33  KRVKYSKKYKAHDEHNEAKVGDIVKIMETR-PLSATKRFRLVEIV 76


>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId:
           562]}
          Length = 174

 Score = 27.0 bits (60), Expect = 2.3
 Identities = 6/16 (37%), Positives = 8/16 (50%)

Query: 242 LTADFYKELYELYGKN 257
            T +F K + E YG  
Sbjct: 5   FTTEFLKSVSEKYGAK 20


>d2hv2a2 d.108.1.10 (A:2-286) Hypothetical protein EF1021
           {Enterococcus faecalis [TaxId: 1351]}
          Length = 285

 Score = 26.7 bits (58), Expect = 3.1
 Identities = 12/80 (15%), Positives = 26/80 (32%)

Query: 223 GDITDPITGKKVVGLRTAVLTADFYKELYELYGKNPQRKFDYKKAPRRGWQEDKKDFTHR 282
               D    K+V G    V  AD  + + ++Y +N +                    +  
Sbjct: 137 IKTEDWPRVKRVPGTIKRVSWADGKEVIKDVYLENQRAHSGGVIRETWWLDYTLNRASKP 196

Query: 283 ESYIRYHEFDDDDQPYAVYK 302
            +   Y+  +   + Y +Y+
Sbjct: 197 NNQAIYYSSEGKAEGYVIYR 216


>d1vkda_ b.67.2.4 (A:) Hypothetical protein TM1225 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 327

 Score = 26.1 bits (57), Expect = 6.3
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 99  VANTRNEVRYFPKFTVMYAHDPDK-ICKTGDIVLIEELPQKLTTLITHKVNKVVYPLGDI 157
           V  T N   Y     ++   DP K + ++   +L  E   +        V  VV+P   +
Sbjct: 234 VTLTCNGYVYSFGAALLDLDDPSKVLYRSRYYLLTPEEEYET----VGFVPNVVFPCAAL 289

Query: 158 TDPITGK 164
            D  TG+
Sbjct: 290 CDADTGR 296


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0642    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,181,974
Number of extensions: 57114
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 11
Length of query: 302
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 217
Effective length of database: 1,240,546
Effective search space: 269198482
Effective search space used: 269198482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.4 bits)