BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13113
(286 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q17QR8|HARB1_BOVIN Putative nuclease HARBI1 OS=Bos taurus GN=HARBI1 PE=2 SV=1
Length = 349
Score = 151 bits (382), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 147/292 (50%), Gaps = 30/292 (10%)
Query: 14 SPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAKCHQQWIHFPED--- 70
SP ++LA L FY +G+FQ D ISQ+++ R VA V+E L + Q+IHFP D
Sbjct: 68 SPETQILAALGFYTSGSFQTRMGDAIGISQASMSRCVANVTEALVERASQFIHFPADEAS 127
Query: 71 LQTAKNQFSGIAGFPRVVVGCIDGTHVPIELPSIENGEHYRNRKHFYSINVQVIGGPNLE 130
+Q K++F G+AG P V+G +D HV I+ P+ E+ Y NRK +S+N ++
Sbjct: 128 VQALKDEFYGLAGIPG-VIGVVDCMHVAIKAPNAEDLS-YVNRKGLHSLNCLMVCDIRGA 185
Query: 131 IYDVVASWPGSTHDSRIFQNSRVYSRFDR-REIRGLLLGDIGYAQNEFTFTPVRNPITPT 189
+ V SWPGS D + Q S + S+F+ LLGD + + TP+ P T
Sbjct: 186 LMTVETSWPGSLQDCVVLQQSSLSSQFEAGMHKESWLLGDSSFFLRTWLMTPLHIP--ET 243
Query: 190 PSQVAYNAAQIRTRNSVERLFGVLKRRFACL---RKKLANQPTTCSHIITACAVLHNIAI 246
P++ YN A T + +E+ F L RF CL + L P SHII AC VLHNI++
Sbjct: 244 PAEYRYNMAHSATHSVIEKTFRTLCSRFRCLDGSKGALQYSPEKSSHIILACCVLHNISL 303
Query: 247 ARR------------EAPPPENNELPVNVHIRDADDNRLGAAVREAFINEHF 286
E PP E E ++ D + +R +R+ + HF
Sbjct: 304 EHGMDVWSSPVTGPVEQPPEEEYE---HMESLDLEADR----IRQELMLTHF 348
>sp|Q8BR93|HARB1_MOUSE Putative nuclease HARBI1 OS=Mus musculus GN=Harbi1 PE=2 SV=1
Length = 349
Score = 151 bits (381), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 131/240 (54%), Gaps = 11/240 (4%)
Query: 14 SPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAKCHQQWIHFPED--- 70
SP ++LA L FY +G+FQ D ISQ+++ R VA V+E L + Q+IHFP D
Sbjct: 68 SPETQILAALGFYTSGSFQTRMGDAIGISQASMSRCVANVTEALVERASQFIHFPVDEAA 127
Query: 71 LQTAKNQFSGIAGFPRVVVGCIDGTHVPIELPSIENGEHYRNRKHFYSINVQVIGGPNLE 130
+Q+ K++F G+AG P V+G D HV I+ P+ E+ Y NRK +S+N V+
Sbjct: 128 VQSLKDEFYGLAGMPG-VIGVADCIHVAIKAPNAED-LSYVNRKGLHSLNCLVVCDIRGA 185
Query: 131 IYDVVASWPGSTHDSRIFQNSRVYSRFDRREIR-GLLLGDIGYAQNEFTFTPVRNPITPT 189
+ V SWPGS D + Q S + S+F+ + LLGD + + TP+ PI T
Sbjct: 186 LMTVETSWPGSLQDCAVLQRSSLTSQFETGMPKDSWLLGDSSFFLRSWLLTPL--PIPET 243
Query: 190 PSQVAYNAAQIRTRNSVERLFGVLKRRFACL---RKKLANQPTTCSHIITACAVLHNIAI 246
++ YN A T + +ER L RF CL + L P CSHII AC VLHNI++
Sbjct: 244 AAEYRYNRAHSATHSVIERTLQTLCCRFRCLDGSKGALQYSPEKCSHIILACCVLHNISL 303
>sp|B0BN95|HARB1_RAT Putative nuclease HARBI1 OS=Rattus norvegicus GN=Harbi1 PE=2 SV=1
Length = 349
Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 148/292 (50%), Gaps = 30/292 (10%)
Query: 14 SPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAKCHQQWIHFPED--- 70
SP ++LA L FY +G+FQ D ISQ+++ R VA V+E L + Q+IHFP D
Sbjct: 68 SPETQILAALGFYTSGSFQTRMGDAIGISQASMSRCVANVTEALVERASQFIHFPADEAA 127
Query: 71 LQTAKNQFSGIAGFPRVVVGCIDGTHVPIELPSIENGEHYRNRKHFYSINVQVIGGPNLE 130
+Q+ K++F G+AG P V+G +D HV I+ P+ E+ Y NRK +S+N V+
Sbjct: 128 IQSLKDEFYGLAGMPG-VIGAVDCIHVAIKAPNAED-LSYVNRKGLHSLNCLVVCDIRGA 185
Query: 131 IYDVVASWPGSTHDSRIFQNSRVYSRFDRREIR-GLLLGDIGYAQNEFTFTPVRNPITPT 189
+ V SWPGS D + Q S + S+F+ + LLGD + + + TP+ P T
Sbjct: 186 LMTVETSWPGSLQDCAVLQQSSLSSQFETGMPKDSWLLGDSSFFLHTWLLTPLHIP--ET 243
Query: 190 PSQVAYNAAQIRTRNSVERLFGVLKRRFACL---RKKLANQPTTCSHIITACAVLHNIAI 246
P++ YN A T + +E+ L RF CL + L P SHII AC VLHNI++
Sbjct: 244 PAEYRYNRAHSATHSVIEKTLRTLCCRFRCLDGSKGALQYSPEKSSHIILACCVLHNISL 303
Query: 247 ARR------------EAPPPENNELPVNVHIRDADDNRLGAAVREAFINEHF 286
E PP +E + D + +R +R+ I HF
Sbjct: 304 EHGMDVWSSPVTGPIEQPPEGEDE---QMESLDLEADR----IRQELILTHF 348
>sp|Q96MB7|HARB1_HUMAN Putative nuclease HARBI1 OS=Homo sapiens GN=HARBI1 PE=1 SV=1
Length = 349
Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 147/292 (50%), Gaps = 30/292 (10%)
Query: 14 SPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAKCHQQWIHFPED--- 70
SP ++LA L FY +G+FQ D ISQ+++ R VA V+E L + Q+I FP D
Sbjct: 68 SPETQVLAALGFYTSGSFQTRMGDAIGISQASMSRCVANVTEALVERASQFIRFPADEAS 127
Query: 71 LQTAKNQFSGIAGFPRVVVGCIDGTHVPIELPSIENGEHYRNRKHFYSINVQVIGGPNLE 130
+Q K++F G+AG P V+G +D HV I+ P+ E+ Y NRK +S+N ++
Sbjct: 128 IQALKDEFYGLAGMPG-VMGVVDCIHVAIKAPNAEDLS-YVNRKGLHSLNCLMVCDIRGT 185
Query: 131 IYDVVASWPGSTHDSRIFQNSRVYSRFDRREIR-GLLLGDIGYAQNEFTFTPVRNPITPT 189
+ V +WPGS D + Q S + S+F+ + LLGD + + TP+ P T
Sbjct: 186 LMTVETNWPGSLQDCAVLQQSSLSSQFEAGMHKDSWLLGDSSFFLRTWLMTPLHIP--ET 243
Query: 190 PSQVAYNAAQIRTRNSVERLFGVLKRRFACL---RKKLANQPTTCSHIITACAVLHNIAI 246
P++ YN A T + +E+ F L RF CL + L P SHII AC VLHNI++
Sbjct: 244 PAEYRYNMAHSATHSVIEKTFRTLCSRFRCLDGSKGALQYSPEKSSHIILACCVLHNISL 303
Query: 247 AR------------REAPPPENNELPVNVHIRDADDNRLGAAVREAFINEHF 286
E PP E E ++ D + +R +R+ + HF
Sbjct: 304 EHGMDVWSSPMTGPMEQPPEEEYE---HMESLDLEADR----IRQELMLTHF 348
>sp|Q6AZB8|HARB1_DANRE Putative nuclease HARBI1 OS=Danio rerio GN=harbi1 PE=2 SV=1
Length = 349
Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 146/290 (50%), Gaps = 26/290 (8%)
Query: 14 SPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAKCHQQWIHFPEDLQT 73
SP V++LA L FY +G+FQ D ISQ+++ R V+ V++ L + ++I F D T
Sbjct: 68 SPDVQILAALGFYTSGSFQSKMGDAIGISQASMSRCVSNVTKALIEKAPEFIGFTRDEAT 127
Query: 74 A---KNQFSGIAGFPRVVVGCIDGTHVPIELPSIENGEHYRNRKHFYSINVQVIGGPNLE 130
K++F IAG P V G +D H+ I+ P+ ++ Y N+K F+SIN Q++
Sbjct: 128 KQQFKDEFYRIAGIPN-VTGVVDCAHIAIKAPNADDSS-YVNKKGFHSINCQLVCDARGL 185
Query: 131 IYDVVASWPGSTHDSRIFQNSRVYSRFDRRE--IRGLLLGDIGYAQNEFTFTPVRNPITP 188
+ WPGS D +F+ S V F+ +E G LLGD Y ++ TPV++P
Sbjct: 186 LLSAETHWPGSLTDRAVFKQSNVAKLFEEQENDDEGWLLGDNRYPLKKWLMTPVQSP--E 243
Query: 189 TPSQVAYNAAQIRTRNSVERLFGVLKRRFACL---RKKLANQPTTCSHIITACAVLHNIA 245
+P+ YN A T V+R F ++ RF CL + L P CSHII AC VLHNI+
Sbjct: 244 SPADYRYNLAHTTTHEIVDRTFRAIQTRFRCLDGAKGYLQYSPEKCSHIIQACCVLHNIS 303
Query: 246 I---------ARREAPPPENNELPVNVHIRDADDNRLGAAVREAFINEHF 286
+ R EA ++ + D DD VR+ I HF
Sbjct: 304 LQSGLDAWTFERTEATDQSGEDIDPS----DTDDPE-ALRVRQELIQNHF 348
>sp|Q5U538|HARB1_XENLA Putative nuclease HARBI1 OS=Xenopus laevis GN=harbi1 PE=2 SV=1
Length = 347
Score = 119 bits (297), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 122/240 (50%), Gaps = 11/240 (4%)
Query: 14 SPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAKCHQQWIHFPED--- 70
SP +++A L FY +G+FQ D ISQ+++ R V V+E L + Q+I FP D
Sbjct: 68 SPETQIMAALGFYTSGSFQTRMGDTIGISQASMSRCVTNVTEALVERASQFISFPRDERS 127
Query: 71 LQTAKNQFSGIAGFPRVVVGCIDGTHVPIELPSIENGEHYRNRKHFYSINVQVIGGPNLE 130
+Q K++F +AG P V+G +D T V I+ P+ E+ Y N + +S+N ++
Sbjct: 128 VQGLKDEFYNLAGVPG-VLGVVDCTQVNIKAPNSEDLS-YVNSRGLHSLNCLLVCDARGS 185
Query: 131 IYDVVASWPGSTHDSRIFQNSRVYSRFD-RREIRGLLLGDIGYAQNEFTFTPVRNPITPT 189
+ S GS D+ + S + F+ + +G LL D + + TPV+ P +
Sbjct: 186 LLWAETSRLGSMQDNAVLHQSELSGLFETKMHKQGWLLADNAFILRPWLMTPVQIP--ES 243
Query: 190 PSQVAYNAAQIRTRNSVERLFGVLKRRFACL---RKKLANQPTTCSHIITACAVLHNIAI 246
PS YN A T + +ER L+ RF CL R L P + I+ AC +LHNIA+
Sbjct: 244 PSDYRYNMAHTATHSVMERTQRSLRLRFRCLDGSRATLQYSPEKSAQIVLACCILHNIAL 303
>sp|A9W685|RIMP_METEP Ribosome maturation factor RimP OS=Methylobacterium extorquens
(strain PA1) GN=rimP PE=3 SV=1
Length = 251
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 15/75 (20%)
Query: 38 YHDISQSTICRLVAKVSEELAKCHQQWIHFPEDLQTA-----KNQFSGIAGFPRVVVGCI 92
Y ++S I R + +VS+ ++W + ++ A + +F GI G P
Sbjct: 85 YLEVSSPGIDRPLVRVSD-----FERWAGYEAKVELAVPMDGRKRFRGIIGVP-----SA 134
Query: 93 DGTHVPIELPSIENG 107
DGT VPI+LP ++ G
Sbjct: 135 DGTTVPIDLPDVKPG 149
>sp|B7KQK1|RIMP_METC4 Ribosome maturation factor RimP OS=Methylobacterium
chloromethanicum (strain CM4 / NCIMB 13688) GN=rimP PE=3
SV=1
Length = 251
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 15/75 (20%)
Query: 38 YHDISQSTICRLVAKVSEELAKCHQQWIHFPEDLQTA-----KNQFSGIAGFPRVVVGCI 92
Y ++S I R + +VS+ ++W + ++ A + +F GI G P
Sbjct: 85 YLEVSSPGIDRPLVRVSD-----FERWAGYEAKVELAVPMDGRKRFRGIIGVP-----SA 134
Query: 93 DGTHVPIELPSIENG 107
DGT VPI+LP ++ G
Sbjct: 135 DGTTVPIDLPDVKPG 149
>sp|Q9W495|PGAP1_DROME GPI inositol-deacylase OS=Drosophila melanogaster GN=CG3160 PE=1
SV=3
Length = 980
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 200 IRTRNSVERLFGVLKRRFACLRKKLANQPTTCSHIITACAVLHNIAIARREAPPPENNEL 259
I R VE + V F LR + T +I+TAC +L + I+ R P PE +
Sbjct: 647 IVLRKQVETFYDV--GTFRSLRPYVGYLQYTSLYIVTACRLLKKLIISSRVFPEPEPLDY 704
Query: 260 PVNVHI 265
+NV I
Sbjct: 705 SINVSI 710
>sp|B1ZDR1|RIMP_METPB Ribosome maturation factor RimP OS=Methylobacterium populi (strain
ATCC BAA-705 / NCIMB 13946 / BJ001) GN=rimP PE=3 SV=1
Length = 255
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 15/75 (20%)
Query: 38 YHDISQSTICRLVAKVSEELAKCHQQWIHFPEDLQTA-----KNQFSGIAGFPRVVVGCI 92
Y +IS I R + +VS+ ++W + ++ A + +F GI G P
Sbjct: 85 YLEISSPGIDRPLVRVSD-----FERWAGYEAKVELAVPMDGRKRFRGILGVP-----SA 134
Query: 93 DGTHVPIELPSIENG 107
DG VPI+LP ++ G
Sbjct: 135 DGATVPIDLPDVKPG 149
>sp|Q60553|ERBB2_MESAU Receptor tyrosine-protein kinase erbB-2 OS=Mesocricetus auratus
GN=ERBB2 PE=2 SV=1
Length = 1254
Score = 33.5 bits (75), Expect = 2.0, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 8/42 (19%)
Query: 132 YDVVASWPGSTHDSRIFQNSRVYSRFDRREIRGLLLGDIGYA 173
Y +++WP S HD +FQN RV IRG +L D Y+
Sbjct: 409 YLYISAWPDSLHDLSVFQNLRV--------IRGRVLHDGAYS 442
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,711,819
Number of Sequences: 539616
Number of extensions: 4786210
Number of successful extensions: 9506
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 9470
Number of HSP's gapped (non-prelim): 11
length of query: 286
length of database: 191,569,459
effective HSP length: 116
effective length of query: 170
effective length of database: 128,974,003
effective search space: 21925580510
effective search space used: 21925580510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)