Query psy13113
Match_columns 286
No_of_seqs 167 out of 1441
Neff 9.0
Searched_HMMs 29240
Date Fri Aug 16 19:55:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13113.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13113hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tc3_C Protein (TC3 transposas 97.2 0.0009 3.1E-08 40.8 5.7 44 8-52 1-44 (51)
2 2glo_A Brinker CG9653-PA; prot 97.1 0.0011 3.6E-08 42.6 5.3 47 8-55 1-51 (59)
3 1jko_C HIN recombinase, DNA-in 96.3 0.005 1.7E-07 37.7 4.2 43 9-52 2-44 (52)
4 2jn6_A Protein CGL2762, transp 96.3 0.0073 2.5E-07 42.7 5.5 45 10-54 3-48 (97)
5 1tty_A Sigma-A, RNA polymerase 95.9 0.022 7.5E-07 39.4 6.2 49 11-59 17-68 (87)
6 1ku3_A Sigma factor SIGA; heli 95.9 0.024 8.2E-07 37.7 6.2 48 11-58 9-59 (73)
7 2jrt_A Uncharacterized protein 95.8 0.019 6.5E-07 40.6 5.9 47 7-53 27-73 (95)
8 2p7v_B Sigma-70, RNA polymeras 95.8 0.016 5.3E-07 38.0 4.9 49 11-59 4-55 (68)
9 2elh_A CG11849-PA, LD40883P; s 95.7 0.021 7.3E-07 39.5 5.7 45 10-55 20-64 (87)
10 2o8x_A Probable RNA polymerase 95.6 0.034 1.2E-06 36.3 6.2 48 11-59 14-61 (70)
11 3hug_A RNA polymerase sigma fa 95.2 0.049 1.7E-06 38.0 6.3 48 12-60 37-84 (92)
12 3t72_q RNA polymerase sigma fa 95.1 0.048 1.6E-06 38.8 5.8 48 12-59 19-69 (99)
13 2x48_A CAG38821; archeal virus 95.0 0.016 5.4E-07 36.2 2.7 42 9-51 10-53 (55)
14 1u78_A TC3 transposase, transp 94.9 0.044 1.5E-06 41.1 5.7 45 8-53 2-46 (141)
15 1fse_A GERE; helix-turn-helix 94.7 0.099 3.4E-06 34.4 6.5 49 9-59 8-56 (74)
16 1k78_A Paired box protein PAX5 94.7 0.097 3.3E-06 39.8 7.2 45 10-55 30-74 (149)
17 2rn7_A IS629 ORFA; helix, all 94.7 0.029 9.9E-07 40.4 3.9 44 9-52 3-53 (108)
18 1hlv_A CENP-B, major centromer 94.6 0.071 2.4E-06 39.6 6.1 50 9-58 4-54 (131)
19 1jhg_A Trp operon repressor; c 94.5 0.039 1.3E-06 39.4 4.0 45 13-58 36-86 (101)
20 1pdn_C Protein (PRD paired); p 94.4 0.087 3E-06 38.5 6.1 44 10-54 15-58 (128)
21 3c57_A Two component transcrip 94.2 0.11 3.8E-06 36.4 6.0 47 11-59 26-72 (95)
22 1je8_A Nitrate/nitrite respons 94.1 0.087 3E-06 35.9 5.1 48 10-59 19-66 (82)
23 1j1v_A Chromosomal replication 94.1 0.07 2.4E-06 37.5 4.6 52 8-59 25-77 (94)
24 1p4w_A RCSB; solution structur 94.0 0.11 3.8E-06 36.8 5.8 50 8-59 30-79 (99)
25 1s7o_A Hypothetical UPF0122 pr 93.9 0.12 4.3E-06 37.6 5.9 48 12-60 22-69 (113)
26 2jpc_A SSRB; DNA binding prote 93.4 0.12 3.9E-06 32.7 4.5 34 26-59 10-43 (61)
27 2w7n_A TRFB transcriptional re 93.4 0.17 6E-06 36.0 5.7 42 17-58 22-63 (101)
28 1x3u_A Transcriptional regulat 93.1 0.14 4.7E-06 34.2 4.7 44 13-58 17-60 (79)
29 3ulq_B Transcriptional regulat 93.0 0.21 7.2E-06 34.7 5.6 49 8-58 25-73 (90)
30 1or7_A Sigma-24, RNA polymeras 92.8 0.22 7.4E-06 39.3 6.3 51 12-63 140-190 (194)
31 2k27_A Paired box protein PAX- 92.7 0.18 6.2E-06 38.8 5.5 43 9-52 22-64 (159)
32 1iuf_A Centromere ABP1 protein 92.7 0.074 2.5E-06 40.5 3.2 52 7-58 6-65 (144)
33 2rnj_A Response regulator prot 92.6 0.14 4.7E-06 35.5 4.3 47 11-59 28-74 (91)
34 1rp3_A RNA polymerase sigma fa 92.6 0.24 8.1E-06 40.3 6.4 49 11-60 186-234 (239)
35 1xsv_A Hypothetical UPF0122 pr 92.3 0.34 1.2E-05 35.2 6.1 49 12-61 25-73 (113)
36 3pvv_A Chromosomal replication 92.0 0.21 7.2E-06 35.6 4.6 51 9-59 30-80 (101)
37 2oa4_A SIR5; structure, struct 90.7 0.46 1.6E-05 33.7 5.2 42 13-54 34-75 (101)
38 3mzy_A RNA polymerase sigma-H 90.6 0.43 1.5E-05 36.1 5.6 47 12-60 109-155 (164)
39 4dyq_A Gene 1 protein; GP1, oc 90.5 0.36 1.2E-05 36.5 4.9 48 5-53 5-53 (140)
40 2q1z_A RPOE, ECF SIGE; ECF sig 90.1 0.41 1.4E-05 37.3 5.1 47 12-59 135-181 (184)
41 2dk5_A DNA-directed RNA polyme 89.9 0.67 2.3E-05 32.2 5.4 48 7-54 12-61 (91)
42 2cob_A LCOR protein; MLR2, KIA 89.7 0.65 2.2E-05 30.4 4.8 39 14-52 14-53 (70)
43 2d1h_A ST1889, 109AA long hypo 89.2 0.6 2.1E-05 32.7 5.0 28 27-54 34-61 (109)
44 1zx4_A P1 PARB, plasmid partit 89.2 0.64 2.2E-05 37.1 5.5 43 11-53 6-48 (192)
45 1qgp_A Protein (double strande 89.0 0.63 2.1E-05 31.2 4.6 39 16-54 16-56 (77)
46 2heo_A Z-DNA binding protein 1 88.7 0.66 2.3E-05 30.1 4.5 39 16-54 12-50 (67)
47 3frw_A Putative Trp repressor 88.6 0.5 1.7E-05 33.8 4.0 30 23-52 52-81 (107)
48 3mky_B Protein SOPB; partition 88.4 0.73 2.5E-05 36.5 5.3 44 10-53 21-66 (189)
49 3kor_A Possible Trp repressor; 88.3 0.7 2.4E-05 33.7 4.7 32 20-51 66-97 (119)
50 1qbj_A Protein (double-strande 88.2 0.95 3.2E-05 30.7 5.2 38 16-53 12-51 (81)
51 2l1p_A DNA-binding protein SAT 87.9 0.67 2.3E-05 31.3 4.1 34 18-51 21-54 (83)
52 2ao9_A Phage protein; structur 87.9 0.78 2.7E-05 35.3 5.0 42 10-51 21-70 (155)
53 2qvo_A Uncharacterized protein 87.8 0.67 2.3E-05 32.1 4.4 37 19-55 17-56 (95)
54 1uxc_A FRUR (1-57), fructose r 87.6 0.34 1.2E-05 31.4 2.4 21 31-51 2-22 (65)
55 2l0k_A Stage III sporulation p 87.1 0.66 2.2E-05 32.4 3.9 26 27-52 18-43 (93)
56 2cw1_A SN4M; lambda CRO fold, 87.1 0.64 2.2E-05 30.1 3.6 29 23-51 7-35 (65)
57 2p5k_A Arginine repressor; DNA 87.0 1.2 4.3E-05 28.0 5.0 36 16-51 4-46 (64)
58 1oyi_A Double-stranded RNA-bin 86.5 0.57 2E-05 31.9 3.2 38 15-54 18-55 (82)
59 3dv8_A Transcriptional regulat 86.4 1 3.5E-05 35.8 5.4 44 13-56 146-196 (220)
60 1y0u_A Arsenical resistance op 86.4 0.94 3.2E-05 31.4 4.5 28 27-54 41-68 (96)
61 3ech_A MEXR, multidrug resista 86.3 1.4 4.7E-05 32.6 5.7 45 11-55 33-77 (142)
62 2lfw_A PHYR sigma-like domain; 86.0 0.56 1.9E-05 35.8 3.4 49 11-60 92-140 (157)
63 2ia0_A Putative HTH-type trans 85.9 1.5 5.1E-05 34.2 5.8 49 7-55 9-57 (171)
64 2x4h_A Hypothetical protein SS 85.8 1 3.5E-05 33.4 4.7 40 16-55 15-57 (139)
65 3r0a_A Putative transcriptiona 85.8 0.75 2.6E-05 33.7 3.9 44 13-56 24-69 (123)
66 1sfx_A Conserved hypothetical 85.8 1.7 5.9E-05 30.2 5.8 30 27-56 32-61 (109)
67 1xn7_A Hypothetical protein YH 85.5 1.3 4.5E-05 29.7 4.6 31 22-52 7-39 (78)
68 2jt1_A PEFI protein; solution 85.4 1.5 5.2E-05 29.3 4.9 38 16-53 6-48 (77)
69 2pij_A Prophage PFL 6 CRO; tra 85.4 0.91 3.1E-05 28.9 3.7 26 25-51 10-35 (67)
70 4aik_A Transcriptional regulat 85.4 1.5 5E-05 33.3 5.5 42 12-53 28-70 (151)
71 4ham_A LMO2241 protein; struct 85.2 1.4 4.9E-05 32.7 5.2 44 8-51 8-60 (134)
72 1l9z_H Sigma factor SIGA; heli 85.2 1.3 4.4E-05 40.1 5.8 47 12-58 375-424 (438)
73 2e1c_A Putative HTH-type trans 85.0 1.7 5.9E-05 33.8 5.8 46 11-56 23-68 (171)
74 2pg4_A Uncharacterized protein 84.7 0.62 2.1E-05 32.2 2.8 41 16-56 14-58 (95)
75 1r71_A Transcriptional repress 84.6 1.4 4.8E-05 34.7 5.1 42 10-51 33-74 (178)
76 3ryp_A Catabolite gene activat 84.4 1.4 4.9E-05 34.7 5.3 43 13-55 138-193 (210)
77 2htj_A P fimbrial regulatory p 84.2 2.1 7.3E-05 28.5 5.3 27 28-54 13-39 (81)
78 1on2_A Transcriptional regulat 84.2 1.5 5E-05 32.6 5.0 38 17-54 7-47 (142)
79 1tbx_A ORF F-93, hypothetical 84.2 1.4 4.9E-05 30.5 4.6 28 28-55 21-52 (99)
80 2gxg_A 146AA long hypothetical 84.1 1.8 6.1E-05 32.0 5.4 43 11-54 33-75 (146)
81 2rdp_A Putative transcriptiona 83.9 2.2 7.6E-05 31.6 6.0 44 11-54 38-81 (150)
82 3g3z_A NMB1585, transcriptiona 83.8 2.3 7.8E-05 31.4 5.9 43 11-53 27-69 (145)
83 3bpv_A Transcriptional regulat 83.7 2.2 7.7E-05 31.1 5.8 43 12-54 26-68 (138)
84 2fmy_A COOA, carbon monoxide o 83.7 1.2 4.1E-05 35.5 4.6 43 13-55 137-193 (220)
85 2nnn_A Probable transcriptiona 83.6 2.3 7.8E-05 31.1 5.8 45 12-56 35-79 (140)
86 3b02_A Transcriptional regulat 83.6 2.2 7.6E-05 33.3 6.1 45 12-56 109-166 (195)
87 1jgs_A Multiple antibiotic res 83.5 2.5 8.6E-05 30.8 6.0 46 11-56 30-75 (138)
88 2oz6_A Virulence factor regula 83.5 1.7 5.7E-05 34.1 5.3 42 13-54 135-189 (207)
89 1ku9_A Hypothetical protein MJ 83.4 1 3.4E-05 33.5 3.7 40 12-52 23-64 (152)
90 3clo_A Transcriptional regulat 83.4 1.8 6E-05 36.0 5.6 47 11-59 196-242 (258)
91 1r1u_A CZRA, repressor protein 83.4 1.7 5.8E-05 30.7 4.8 29 27-55 37-65 (106)
92 3bro_A Transcriptional regulat 83.3 2.7 9.4E-05 30.7 6.2 44 12-55 31-76 (141)
93 3oop_A LIN2960 protein; protei 83.3 2 6.9E-05 31.7 5.4 46 10-55 32-77 (143)
94 2lkp_A Transcriptional regulat 83.2 2.4 8.1E-05 30.4 5.6 28 28-55 44-71 (119)
95 2zcw_A TTHA1359, transcription 83.2 2.1 7.2E-05 33.6 5.8 44 13-56 117-173 (202)
96 2pex_A Transcriptional regulat 83.0 2 7E-05 32.1 5.4 44 10-53 42-85 (153)
97 2fbi_A Probable transcriptiona 82.9 2 6.9E-05 31.5 5.3 44 12-55 33-76 (142)
98 3iwz_A CAP-like, catabolite ac 82.8 2.1 7.3E-05 34.1 5.8 42 13-54 158-212 (230)
99 3la7_A Global nitrogen regulat 82.5 1.9 6.4E-05 35.2 5.3 43 13-55 163-219 (243)
100 3cuo_A Uncharacterized HTH-typ 82.4 1.2 4.2E-05 30.6 3.7 27 29-55 38-64 (99)
101 2a61_A Transcriptional regulat 82.4 2.6 8.9E-05 31.0 5.7 43 12-54 30-72 (145)
102 3nrv_A Putative transcriptiona 82.4 2.4 8.2E-05 31.4 5.6 46 11-56 36-81 (148)
103 2l8n_A Transcriptional repress 82.3 0.42 1.4E-05 31.2 1.0 22 30-51 10-31 (67)
104 2fbh_A Transcriptional regulat 82.3 1.9 6.4E-05 31.8 4.9 43 12-54 34-77 (146)
105 2a6h_F RNA polymerase sigma fa 82.3 1.6 5.3E-05 39.4 5.1 47 12-58 360-409 (423)
106 3k0l_A Repressor protein; heli 82.2 2.6 9E-05 31.9 5.8 43 11-53 42-84 (162)
107 1l3l_A Transcriptional activat 82.2 2.9 9.9E-05 34.0 6.4 48 10-59 171-218 (234)
108 1z91_A Organic hydroperoxide r 82.1 2.2 7.4E-05 31.6 5.2 44 11-54 36-79 (147)
109 2q0o_A Probable transcriptiona 82.1 2.5 8.5E-05 34.5 6.0 48 10-59 173-220 (236)
110 1u78_A TC3 transposase, transp 81.9 3.5 0.00012 30.2 6.3 47 7-53 55-103 (141)
111 2frh_A SARA, staphylococcal ac 81.7 1.9 6.6E-05 31.4 4.7 45 11-56 33-80 (127)
112 4ev0_A Transcription regulator 81.6 1.7 5.7E-05 34.4 4.6 43 14-56 141-190 (216)
113 2cyy_A Putative HTH-type trans 81.5 3.6 0.00012 30.9 6.3 44 13-56 5-48 (151)
114 3bdd_A Regulatory protein MARR 81.5 2.8 9.6E-05 30.6 5.6 27 27-53 43-69 (142)
115 1zyb_A Transcription regulator 81.3 2.1 7.1E-05 34.5 5.2 45 10-54 159-211 (232)
116 2w48_A Sorbitol operon regulat 81.2 2.2 7.5E-05 36.7 5.5 37 19-55 11-47 (315)
117 1rzs_A Antirepressor, regulato 81.2 0.49 1.7E-05 30.1 1.0 24 27-50 8-31 (61)
118 2fa5_A Transcriptional regulat 81.0 3.1 0.00011 31.3 5.9 42 12-54 46-88 (162)
119 2k02_A Ferrous iron transport 81.0 1.4 4.8E-05 30.3 3.3 30 22-51 7-38 (87)
120 2oqg_A Possible transcriptiona 80.7 2.1 7.3E-05 30.3 4.5 29 27-55 32-60 (114)
121 2ofy_A Putative XRE-family tra 80.7 3.2 0.00011 27.7 5.2 34 18-51 16-49 (86)
122 3tgn_A ADC operon repressor AD 80.6 3.5 0.00012 30.3 5.9 44 10-54 33-76 (146)
123 2cfx_A HTH-type transcriptiona 80.5 3.5 0.00012 30.8 5.9 27 28-54 18-44 (144)
124 3cjn_A Transcriptional regulat 80.4 2.4 8.3E-05 32.0 5.0 43 12-54 49-91 (162)
125 4hbl_A Transcriptional regulat 80.4 2.5 8.5E-05 31.5 5.0 44 11-54 37-80 (149)
126 1ft9_A Carbon monoxide oxidati 80.4 1.8 6.3E-05 34.5 4.5 44 13-56 133-190 (222)
127 2eth_A Transcriptional regulat 80.4 2.9 9.9E-05 31.3 5.4 28 28-55 57-84 (154)
128 1sfu_A 34L protein; protein/Z- 80.2 3.1 0.00011 27.6 4.7 40 13-52 11-52 (75)
129 3szt_A QCSR, quorum-sensing co 80.2 2.8 9.6E-05 34.3 5.6 48 9-58 172-219 (237)
130 2hin_A GP39, repressor protein 80.1 1.1 3.9E-05 29.4 2.6 21 31-51 12-32 (71)
131 3eco_A MEPR; mutlidrug efflux 80.1 2.7 9.2E-05 30.8 5.1 44 12-55 28-73 (139)
132 2w25_A Probable transcriptiona 80.1 3.6 0.00012 30.9 5.8 27 28-54 20-46 (150)
133 1i1g_A Transcriptional regulat 80.1 3.1 0.00011 30.8 5.4 27 29-55 18-44 (141)
134 3bj6_A Transcriptional regulat 79.9 2.7 9.1E-05 31.3 5.0 42 12-53 37-78 (152)
135 3dkw_A DNR protein; CRP-FNR, H 79.8 2.2 7.6E-05 34.0 4.8 42 14-55 152-204 (227)
136 2qww_A Transcriptional regulat 79.6 2.7 9.4E-05 31.3 5.0 41 12-53 38-79 (154)
137 1lj9_A Transcriptional regulat 79.5 2.2 7.4E-05 31.5 4.4 42 12-53 26-67 (144)
138 1q1h_A TFE, transcription fact 79.5 2.9 0.0001 29.5 4.9 27 29-55 33-59 (110)
139 3e6c_C CPRK, cyclic nucleotide 79.4 3.2 0.00011 33.8 5.7 45 12-56 146-204 (250)
140 2cg4_A Regulatory protein ASNC 79.4 4.1 0.00014 30.7 6.0 29 28-56 21-49 (152)
141 3kcc_A Catabolite gene activat 79.4 2.7 9.3E-05 34.6 5.4 43 13-55 188-243 (260)
142 4ghj_A Probable transcriptiona 79.3 2.7 9.2E-05 29.6 4.5 36 16-51 34-71 (101)
143 2dbb_A Putative HTH-type trans 79.2 4.2 0.00014 30.5 6.0 44 13-56 7-50 (151)
144 1s3j_A YUSO protein; structura 79.1 2.5 8.6E-05 31.5 4.7 42 12-53 34-75 (155)
145 3fmy_A HTH-type transcriptiona 79.1 1.6 5.6E-05 28.4 3.1 28 24-51 19-46 (73)
146 2xi8_A Putative transcription 79.1 1.4 5E-05 27.5 2.8 26 26-51 11-36 (66)
147 3jw4_A Transcriptional regulat 79.0 2.8 9.4E-05 31.2 4.9 45 12-56 38-84 (148)
148 1fx7_A Iron-dependent represso 78.9 2.5 8.7E-05 34.4 4.9 43 14-56 6-51 (230)
149 2b5a_A C.BCLI; helix-turn-heli 78.9 2.8 9.5E-05 27.1 4.3 35 17-51 9-45 (77)
150 3d0s_A Transcriptional regulat 78.8 3.3 0.00011 33.0 5.6 43 13-55 147-203 (227)
151 1vz0_A PARB, chromosome partit 78.5 3.3 0.00011 33.9 5.5 42 10-51 115-156 (230)
152 2nyx_A Probable transcriptiona 78.5 3.4 0.00012 31.5 5.4 42 12-53 42-83 (168)
153 3bd1_A CRO protein; transcript 78.5 1.9 6.5E-05 28.5 3.4 24 27-51 10-33 (79)
154 1neq_A DNA-binding protein NER 78.5 1.9 6.7E-05 28.4 3.4 32 18-51 13-44 (74)
155 2fu4_A Ferric uptake regulatio 78.2 5.1 0.00017 26.6 5.6 27 29-55 33-64 (83)
156 3bja_A Transcriptional regulat 78.1 2.4 8.4E-05 30.9 4.3 44 12-55 30-73 (139)
157 3fm5_A Transcriptional regulat 78.0 2.6 8.8E-05 31.4 4.4 44 12-55 36-80 (150)
158 3pqk_A Biofilm growth-associat 78.0 2.1 7.2E-05 29.8 3.7 33 23-55 29-62 (102)
159 2p5v_A Transcriptional regulat 78.0 4.4 0.00015 30.9 5.8 44 13-56 8-51 (162)
160 2hr3_A Probable transcriptiona 77.7 2.4 8.1E-05 31.4 4.1 29 27-55 48-76 (147)
161 3e6m_A MARR family transcripti 77.6 3.1 0.0001 31.5 4.8 43 13-55 51-93 (161)
162 3kz3_A Repressor protein CI; f 77.6 2.5 8.6E-05 27.9 3.8 25 27-51 23-47 (80)
163 3qp6_A CVIR transcriptional re 77.6 5.4 0.00019 33.2 6.7 48 10-59 195-242 (265)
164 2kko_A Possible transcriptiona 77.5 1.3 4.6E-05 31.4 2.5 29 28-56 37-65 (108)
165 3kp7_A Transcriptional regulat 77.5 3.3 0.00011 30.8 4.9 42 12-54 35-76 (151)
166 3fx3_A Cyclic nucleotide-bindi 77.5 3.7 0.00013 32.9 5.6 45 11-55 150-204 (237)
167 1r69_A Repressor protein CI; g 77.4 2.2 7.4E-05 26.9 3.3 26 26-51 11-36 (69)
168 3jth_A Transcription activator 77.4 1.6 5.5E-05 30.2 2.8 34 23-56 29-63 (98)
169 3deu_A Transcriptional regulat 77.3 3.9 0.00013 31.2 5.4 45 10-54 48-93 (166)
170 1zug_A Phage 434 CRO protein; 77.2 2.2 7.5E-05 27.1 3.3 26 26-51 13-38 (71)
171 2bv6_A MGRA, HTH-type transcri 77.1 2.4 8.2E-05 31.2 4.0 44 12-55 34-77 (142)
172 3omt_A Uncharacterized protein 76.7 1.6 5.6E-05 28.2 2.6 26 26-51 18-43 (73)
173 2a6c_A Helix-turn-helix motif; 76.6 2.2 7.6E-05 28.5 3.3 26 26-51 28-53 (83)
174 3cdh_A Transcriptional regulat 76.6 3.5 0.00012 30.8 4.8 44 12-55 40-83 (155)
175 3f6o_A Probable transcriptiona 76.2 2.3 8E-05 30.6 3.6 30 27-56 29-58 (118)
176 3f3x_A Transcriptional regulat 76.2 3.8 0.00013 30.1 4.9 26 31-56 52-77 (144)
177 3qq6_A HTH-type transcriptiona 76.2 2.6 8.8E-05 27.8 3.5 28 24-51 18-45 (78)
178 3e97_A Transcriptional regulat 76.1 3.6 0.00012 32.9 5.1 42 15-56 147-202 (231)
179 2pn6_A ST1022, 150AA long hypo 76.0 3.9 0.00013 30.6 5.0 33 24-56 10-44 (150)
180 1r1t_A Transcriptional repress 75.9 4.3 0.00015 29.5 5.0 33 23-55 52-85 (122)
181 2ovg_A Phage lambda CRO; trans 75.7 1.3 4.4E-05 28.7 1.8 22 30-51 14-35 (66)
182 2wiu_B HTH-type transcriptiona 75.7 3 0.0001 27.8 3.8 34 18-51 12-47 (88)
183 1p6r_A Penicillinase repressor 75.7 5.4 0.00019 26.4 5.1 43 11-54 5-52 (82)
184 2hzt_A Putative HTH-type trans 75.7 3.8 0.00013 28.9 4.5 33 23-55 20-54 (107)
185 3eus_A DNA-binding protein; st 75.4 2.8 9.6E-05 28.2 3.6 35 17-51 13-49 (86)
186 2r1j_L Repressor protein C2; p 75.4 2.3 7.9E-05 26.7 3.0 26 26-51 15-40 (68)
187 2zkz_A Transcriptional repress 75.3 2.8 9.6E-05 29.1 3.7 41 16-56 27-68 (99)
188 1zs4_A Regulatory protein CII; 75.2 4.5 0.00015 27.4 4.4 34 19-53 15-48 (83)
189 3s2w_A Transcriptional regulat 75.2 2.7 9.3E-05 31.7 3.9 28 27-54 62-89 (159)
190 1ub9_A Hypothetical protein PH 74.9 4.1 0.00014 27.8 4.5 29 28-56 29-57 (100)
191 2bgc_A PRFA; bacterial infecti 74.7 3.1 0.00011 33.6 4.4 44 13-56 138-197 (238)
192 3nqo_A MARR-family transcripti 74.4 5.3 0.00018 31.2 5.5 40 13-52 39-80 (189)
193 2k9q_A Uncharacterized protein 74.1 2 6.8E-05 28.1 2.5 27 25-51 11-37 (77)
194 4b8x_A SCO5413, possible MARR- 74.1 3.2 0.00011 31.1 4.0 42 12-53 32-75 (147)
195 1okr_A MECI, methicillin resis 74.0 5.1 0.00017 28.7 5.0 45 11-56 6-55 (123)
196 1mkm_A ICLR transcriptional re 73.9 4.3 0.00015 33.4 5.0 44 13-56 4-50 (249)
197 1u2w_A CADC repressor, cadmium 73.9 3.7 0.00013 29.8 4.1 33 23-55 48-82 (122)
198 3bs3_A Putative DNA-binding pr 73.8 2.4 8.1E-05 27.4 2.8 26 26-51 20-45 (76)
199 3b7h_A Prophage LP1 protein 11 73.8 2.7 9.1E-05 27.3 3.1 33 19-51 8-42 (78)
200 3uj3_X DNA-invertase; helix-tu 73.8 0.67 2.3E-05 36.8 0.0 44 8-52 138-181 (193)
201 2h09_A Transcriptional regulat 73.7 5.1 0.00017 30.1 5.1 29 28-56 53-81 (155)
202 1y7y_A C.AHDI; helix-turn-heli 73.7 3 0.0001 26.6 3.3 35 17-51 12-48 (74)
203 3hsr_A HTH-type transcriptiona 73.6 2.3 7.9E-05 31.3 3.0 42 12-55 33-76 (140)
204 3iyd_F RNA polymerase sigma fa 73.4 2.4 8.2E-05 40.1 3.7 49 11-59 549-600 (613)
205 2gau_A Transcriptional regulat 73.1 5.4 0.00018 31.8 5.4 43 13-55 151-206 (232)
206 2jsc_A Transcriptional regulat 73.0 3.6 0.00012 29.6 3.8 29 27-55 32-60 (118)
207 3o9x_A Uncharacterized HTH-typ 72.9 2.6 8.9E-05 31.0 3.1 27 25-51 80-106 (133)
208 2ewt_A BLDD, putative DNA-bind 72.8 4.4 0.00015 25.6 4.0 34 18-51 8-45 (71)
209 1adr_A P22 C2 repressor; trans 72.7 2.9 9.8E-05 26.9 3.0 26 26-51 15-40 (76)
210 2wte_A CSA3; antiviral protein 72.4 6.5 0.00022 32.4 5.8 30 27-56 164-193 (244)
211 2ppx_A AGR_C_3184P, uncharacte 72.0 3.5 0.00012 28.5 3.5 26 26-51 40-65 (99)
212 2f2e_A PA1607; transcription f 71.9 5.3 0.00018 30.0 4.7 34 23-56 30-64 (146)
213 2fxa_A Protease production reg 71.9 5.8 0.0002 31.6 5.2 44 11-54 44-87 (207)
214 3s8q_A R-M controller protein; 71.7 3.8 0.00013 27.0 3.5 36 16-51 9-46 (82)
215 1x57_A Endothelial differentia 71.6 9.4 0.00032 25.6 5.6 27 25-51 22-48 (91)
216 3hot_A Transposable element ma 71.6 37 0.0013 28.8 10.8 125 8-137 67-209 (345)
217 3f6w_A XRE-family like protein 71.4 3.4 0.00012 27.3 3.2 34 18-51 14-49 (83)
218 2b0l_A GTP-sensing transcripti 71.4 3.1 0.00011 29.3 3.1 25 31-55 45-69 (102)
219 2qq9_A Diphtheria toxin repres 71.4 4.1 0.00014 33.1 4.3 41 16-56 8-51 (226)
220 3u2r_A Regulatory protein MARR 71.4 3.9 0.00013 31.1 4.0 44 11-54 42-87 (168)
221 2jvl_A TRMBF1; coactivator, he 71.2 7.4 0.00025 27.4 5.1 35 17-51 33-71 (107)
222 2vn2_A DNAD, chromosome replic 70.9 7.6 0.00026 28.4 5.3 47 10-56 27-78 (128)
223 1lmb_3 Protein (lambda repress 70.8 2.6 8.7E-05 28.6 2.5 26 26-51 27-52 (92)
224 3boq_A Transcriptional regulat 70.5 3.2 0.00011 31.1 3.3 44 12-55 44-88 (160)
225 2kpj_A SOS-response transcript 70.4 3.4 0.00011 28.2 3.1 35 17-51 8-44 (94)
226 3t76_A VANU, transcriptional r 70.4 3.9 0.00013 27.9 3.3 27 25-51 33-59 (88)
227 1yyv_A Putative transcriptiona 70.3 6.3 0.00021 29.0 4.7 35 22-56 40-76 (131)
228 1j5y_A Transcriptional regulat 70.2 5.9 0.0002 31.0 4.9 41 15-55 19-62 (187)
229 3vk0_A NHTF, transcriptional r 69.8 12 0.00041 26.4 6.1 39 13-51 16-56 (114)
230 2ef8_A C.ECOT38IS, putative tr 69.8 4.1 0.00014 26.8 3.3 34 18-51 10-45 (84)
231 1z4h_A TORI, TOR inhibition pr 69.7 3.2 0.00011 26.5 2.6 22 31-52 12-33 (66)
232 3hrs_A Metalloregulator SCAR; 69.4 6.1 0.00021 31.8 4.9 40 16-55 4-46 (214)
233 2o0y_A Transcriptional regulat 68.8 3.7 0.00013 34.2 3.5 47 10-56 16-65 (260)
234 2xrn_A HTH-type transcriptiona 68.4 5.6 0.00019 32.6 4.5 43 14-56 3-48 (241)
235 1qpz_A PURA, protein (purine n 68.1 2.5 8.6E-05 36.2 2.4 22 31-52 2-23 (340)
236 1z7u_A Hypothetical protein EF 68.1 7.2 0.00025 27.6 4.5 29 28-56 34-63 (112)
237 2ict_A Antitoxin HIGA; helix-t 67.9 5 0.00017 27.3 3.5 38 13-52 7-44 (94)
238 1j9i_A GPNU1 DBD;, terminase s 67.7 1.9 6.6E-05 27.8 1.2 22 31-52 4-25 (68)
239 4fx0_A Probable transcriptiona 67.1 9.2 0.00031 28.5 5.2 25 30-54 53-77 (148)
240 3tqn_A Transcriptional regulat 66.9 4.6 0.00016 28.8 3.3 45 12-56 7-60 (113)
241 3by6_A Predicted transcription 66.5 16 0.00054 26.6 6.2 44 11-54 8-60 (126)
242 2hsg_A Glucose-resistance amyl 66.5 2.5 8.5E-05 36.1 2.0 23 30-52 3-25 (332)
243 3oou_A LIN2118 protein; protei 66.4 11 0.00037 26.3 5.2 31 24-54 16-46 (108)
244 3f6v_A Possible transcriptiona 66.4 4.4 0.00015 30.7 3.2 34 23-56 64-98 (151)
245 3cec_A Putative antidote prote 66.2 3.5 0.00012 28.7 2.5 27 25-51 27-53 (104)
246 2g7u_A Transcriptional regulat 66.0 6.9 0.00024 32.3 4.7 46 11-56 8-56 (257)
247 2fsw_A PG_0823 protein; alpha- 66.0 8.2 0.00028 27.0 4.4 34 22-55 30-65 (107)
248 2l49_A C protein; P2 bacteriop 65.8 5.7 0.00019 27.1 3.5 27 25-51 13-39 (99)
249 2obp_A Putative DNA-binding pr 65.6 11 0.00038 26.2 4.9 45 11-55 12-62 (96)
250 3i4p_A Transcriptional regulat 65.6 9.2 0.00031 29.1 5.0 33 23-55 9-43 (162)
251 2g9w_A Conserved hypothetical 65.5 4.7 0.00016 29.8 3.2 43 12-54 6-53 (138)
252 3kxa_A NGO0477 protein, putati 65.2 6.5 0.00022 29.3 4.0 28 24-51 76-103 (141)
253 3f52_A CLP gene regulator (CLG 65.2 9.5 0.00033 27.0 4.8 39 13-51 23-63 (117)
254 3trb_A Virulence-associated pr 65.1 4.3 0.00015 28.6 2.8 40 11-51 10-49 (104)
255 2auw_A Hypothetical protein NE 65.0 4.5 0.00015 31.5 3.0 29 23-51 97-125 (170)
256 3g5g_A Regulatory protein; tra 64.5 6.2 0.00021 27.4 3.5 37 15-51 25-63 (99)
257 3neu_A LIN1836 protein; struct 64.2 5.1 0.00018 29.2 3.1 46 10-55 9-63 (125)
258 3mn2_A Probable ARAC family tr 64.2 12 0.0004 26.1 5.0 29 25-53 14-42 (108)
259 3k2z_A LEXA repressor; winged 64.2 11 0.00037 29.7 5.3 39 16-54 7-49 (196)
260 1xwr_A Regulatory protein CII; 64.2 5.3 0.00018 28.0 3.0 32 21-53 16-47 (97)
261 4a5n_A Uncharacterized HTH-typ 64.1 10 0.00035 28.0 4.8 35 22-56 31-67 (131)
262 2v79_A DNA replication protein 63.9 16 0.00055 27.0 5.9 29 28-56 50-78 (135)
263 2k4b_A Transcriptional regulat 63.9 5.8 0.0002 27.8 3.2 44 11-55 31-79 (99)
264 1o5l_A Transcriptional regulat 63.8 1.6 5.5E-05 34.7 0.3 43 13-55 141-190 (213)
265 3op9_A PLI0006 protein; struct 63.8 6.3 0.00022 27.8 3.5 26 26-51 19-44 (114)
266 1sd4_A Penicillinase repressor 63.7 11 0.00038 26.9 5.0 44 11-55 6-54 (126)
267 1a04_A Nitrate/nitrite respons 63.5 8.8 0.0003 30.1 4.7 45 12-58 154-198 (215)
268 3mlf_A Transcriptional regulat 63.4 7.5 0.00026 27.6 3.9 28 24-51 31-58 (111)
269 3df8_A Possible HXLR family tr 63.2 9.8 0.00033 27.0 4.4 35 22-56 32-70 (111)
270 1b0n_A Protein (SINR protein); 62.8 6.3 0.00021 27.5 3.3 27 25-51 10-36 (111)
271 3h5t_A Transcriptional regulat 62.6 3.2 0.00011 36.0 2.0 22 30-51 10-31 (366)
272 3kjx_A Transcriptional regulat 62.3 2.8 9.5E-05 36.0 1.6 23 30-52 11-33 (344)
273 1uly_A Hypothetical protein PH 62.1 7.3 0.00025 30.8 3.9 25 27-51 31-55 (192)
274 1rr7_A Middle operon regulator 61.9 5.7 0.00019 29.4 3.0 28 28-55 91-118 (129)
275 3plo_X DNA-invertase; resolvas 61.9 1.6 5.6E-05 34.5 0.0 35 22-56 151-185 (193)
276 2o38_A Hypothetical protein; a 61.6 6.7 0.00023 28.4 3.3 34 18-51 40-75 (120)
277 3cta_A Riboflavin kinase; stru 61.6 9.2 0.00031 30.9 4.5 26 30-55 28-53 (230)
278 3e7l_A Transcriptional regulat 60.9 16 0.00054 22.9 4.7 27 26-52 29-55 (63)
279 2fbk_A Transcriptional regulat 60.4 8.2 0.00028 29.7 3.9 45 12-56 66-113 (181)
280 3ivp_A Putative transposon-rel 60.3 7.2 0.00025 28.1 3.3 33 19-51 13-47 (126)
281 2r0q_C Putative transposon TN5 60.1 7.4 0.00025 31.0 3.7 29 23-51 169-197 (209)
282 3n0r_A Response regulator; sig 60.1 16 0.00055 30.6 5.9 49 12-61 111-159 (286)
283 1ntc_A Protein (nitrogen regul 59.4 14 0.00049 25.1 4.6 28 26-53 61-88 (91)
284 2eby_A Putative HTH-type trans 59.3 5.2 0.00018 28.3 2.3 26 26-51 21-46 (113)
285 3c3w_A Two component transcrip 59.1 9.5 0.00032 30.3 4.2 46 11-58 148-193 (225)
286 2ijl_A AGR_C_4647P, molybdenum 58.6 9 0.00031 28.5 3.6 39 21-59 30-68 (135)
287 2ia2_A Putative transcriptiona 58.4 7.7 0.00026 32.2 3.6 46 11-56 15-63 (265)
288 2p8t_A Hypothetical protein PH 58.3 15 0.0005 29.4 5.0 41 16-56 17-57 (200)
289 2ek5_A Predicted transcription 58.2 7.8 0.00027 28.4 3.2 23 31-53 30-52 (129)
290 1u8b_A ADA polyprotein; protei 58.1 15 0.0005 26.8 4.8 39 16-54 78-118 (133)
291 3bdn_A Lambda repressor; repre 58.0 11 0.00038 30.3 4.5 43 10-52 4-53 (236)
292 2opt_A Actii protein; helical 56.7 11 0.00036 30.6 4.1 51 9-59 2-56 (234)
293 3hhg_A Transcriptional regulat 56.4 14 0.00049 30.3 5.0 40 20-59 8-47 (306)
294 2k9s_A Arabinose operon regula 56.0 16 0.00055 25.3 4.5 27 28-54 19-45 (107)
295 1umq_A Photosynthetic apparatu 55.6 20 0.00068 24.0 4.6 35 18-52 43-77 (81)
296 2y75_A HTH-type transcriptiona 55.6 16 0.00054 26.4 4.6 34 19-52 11-49 (129)
297 3lsg_A Two-component response 55.5 23 0.0008 24.2 5.3 26 29-54 19-44 (103)
298 2fjr_A Repressor protein CI; g 55.4 15 0.0005 28.4 4.6 33 19-51 10-42 (189)
299 3ctp_A Periplasmic binding pro 55.2 2.5 8.6E-05 36.0 0.0 22 31-52 4-25 (330)
300 2wus_R RODZ, putative uncharac 55.2 9.1 0.00031 27.3 3.1 34 18-51 7-42 (112)
301 1v4r_A Transcriptional repress 55.1 4.1 0.00014 28.4 1.1 21 31-51 37-57 (102)
302 2o20_A Catabolite control prot 55.1 2.5 8.6E-05 36.0 0.0 23 30-52 6-28 (332)
303 1ic8_A Hepatocyte nuclear fact 55.1 9.4 0.00032 30.3 3.3 26 26-51 40-65 (194)
304 3bil_A Probable LACI-family tr 54.2 2.7 9.1E-05 36.3 0.0 23 30-52 9-31 (348)
305 1yio_A Response regulatory pro 54.0 13 0.00045 28.8 4.2 44 13-58 143-186 (208)
306 3h5o_A Transcriptional regulat 53.8 2.7 9.3E-05 35.9 0.0 23 30-52 5-27 (339)
307 3f8m_A GNTR-family protein tra 53.6 17 0.00058 29.8 4.9 44 11-54 11-61 (248)
308 3jvd_A Transcriptional regulat 53.5 2.8 9.5E-05 35.9 0.0 23 30-52 7-29 (333)
309 1ixc_A CBNR, LYSR-type regulat 53.2 14 0.00047 30.2 4.3 37 23-59 9-45 (294)
310 1jye_A Lactose operon represso 53.1 2.8 9.7E-05 36.1 0.0 24 30-53 4-27 (349)
311 3dbi_A Sugar-binding transcrip 52.8 2.9 9.9E-05 35.7 0.0 23 30-52 4-26 (338)
312 2h8r_A Hepatocyte nuclear fact 52.7 9.4 0.00032 31.0 3.0 31 21-51 36-66 (221)
313 3oio_A Transcriptional regulat 52.5 13 0.00044 26.2 3.5 36 18-53 8-47 (113)
314 2yu3_A DNA-directed RNA polyme 52.5 48 0.0016 22.9 6.3 48 8-55 30-79 (95)
315 3lfp_A CSP231I C protein; tran 52.1 14 0.00049 25.1 3.6 27 25-51 10-40 (98)
316 3e3m_A Transcriptional regulat 51.8 3.1 0.0001 35.9 0.0 23 30-52 13-35 (355)
317 3isp_A HTH-type transcriptiona 51.8 15 0.00052 30.2 4.4 40 20-59 11-50 (303)
318 1bia_A BIRA bifunctional prote 51.6 17 0.00057 31.2 4.7 37 19-55 7-45 (321)
319 1jhf_A LEXA repressor; LEXA SO 51.3 22 0.00076 27.8 5.1 42 13-54 4-51 (202)
320 3u1d_A Uncharacterized protein 51.2 26 0.00089 26.5 5.1 39 16-54 29-71 (151)
321 3r4k_A Transcriptional regulat 50.9 10 0.00034 31.4 3.1 43 14-56 3-48 (260)
322 3hot_A Transposable element ma 50.6 20 0.00069 30.5 5.1 39 17-55 10-55 (345)
323 1r7j_A Conserved hypothetical 50.4 35 0.0012 23.3 5.4 39 17-55 8-46 (95)
324 3klo_A Transcriptional regulat 50.1 16 0.00054 28.9 4.1 43 13-57 160-202 (225)
325 3szp_A Transcriptional regulat 49.9 17 0.00057 29.5 4.3 38 22-59 8-45 (291)
326 3fxq_A LYSR type regulator of 49.7 17 0.00059 30.0 4.4 37 23-59 10-46 (305)
327 2p4w_A Transcriptional regulat 49.5 18 0.00062 28.7 4.3 25 27-51 26-50 (202)
328 1y6u_A XIS, excisionase from t 49.1 11 0.00038 24.5 2.4 22 30-51 17-38 (70)
329 2gqq_A Leucine-responsive regu 49.1 7.5 0.00026 29.6 1.9 27 28-54 26-52 (163)
330 3m8j_A FOCB protein; all-alpha 48.9 48 0.0016 23.6 5.8 40 15-54 46-85 (111)
331 3mq0_A Transcriptional repress 48.3 8 0.00027 32.4 2.1 45 12-56 25-72 (275)
332 2esn_A Probable transcriptiona 48.2 16 0.00055 30.2 4.0 38 22-59 17-54 (310)
333 3b73_A PHIH1 repressor-like pr 48.1 26 0.00089 24.9 4.5 40 16-56 15-56 (111)
334 2hoe_A N-acetylglucosamine kin 47.9 8.5 0.00029 33.7 2.3 36 19-56 25-60 (380)
335 2hxi_A Putative transcriptiona 47.6 18 0.00062 29.2 4.1 52 8-59 24-79 (241)
336 1z05_A Transcriptional regulat 47.4 22 0.00074 31.7 5.0 28 28-55 52-79 (429)
337 2o0m_A Transcriptional regulat 47.2 4 0.00014 35.5 0.0 37 19-56 25-61 (345)
338 2o3f_A Putative HTH-type trans 46.9 20 0.00069 25.4 3.8 24 29-52 39-62 (111)
339 1z6r_A MLC protein; transcript 46.8 24 0.00081 31.1 5.1 35 22-56 21-57 (406)
340 3fym_A Putative uncharacterize 46.7 14 0.00048 27.0 3.0 27 25-51 12-38 (130)
341 1hw1_A FADR, fatty acid metabo 46.7 13 0.00045 30.0 3.1 23 31-53 33-55 (239)
342 1p4x_A Staphylococcal accessor 46.6 27 0.00091 28.8 5.0 27 30-56 175-201 (250)
343 1bl0_A Protein (multiple antib 46.4 21 0.00072 25.7 4.0 36 19-54 13-52 (129)
344 3mkl_A HTH-type transcriptiona 46.0 20 0.0007 25.4 3.8 27 27-53 21-47 (120)
345 3ic7_A Putative transcriptiona 45.7 7.8 0.00027 28.3 1.4 24 31-54 37-60 (126)
346 2fe3_A Peroxide operon regulat 45.6 24 0.00081 26.2 4.2 24 29-52 37-65 (145)
347 1y9q_A Transcriptional regulat 45.6 16 0.00054 28.3 3.4 35 17-51 10-46 (192)
348 1hsj_A Fusion protein consisti 44.6 19 0.00067 32.3 4.2 47 10-56 399-447 (487)
349 3fzv_A Probable transcriptiona 44.2 15 0.00052 30.1 3.2 40 20-59 9-48 (306)
350 3ppb_A Putative TETR family tr 43.9 13 0.00046 28.0 2.6 46 16-61 12-61 (195)
351 2fq4_A Transcriptional regulat 43.8 15 0.0005 28.1 2.9 30 29-58 32-61 (192)
352 1b4a_A Arginine repressor; hel 43.5 40 0.0014 25.4 5.1 34 18-51 6-46 (149)
353 1c9b_A General transcription f 43.0 21 0.00073 28.1 3.8 53 12-64 138-194 (207)
354 3t8r_A Staphylococcus aureus C 42.8 34 0.0012 25.4 4.6 41 12-52 5-51 (143)
355 2dg7_A Putative transcriptiona 42.6 23 0.00077 26.9 3.8 44 16-59 10-57 (195)
356 1g2h_A Transcriptional regulat 42.6 58 0.002 20.0 5.9 23 30-52 34-56 (61)
357 2wv0_A YVOA, HTH-type transcri 42.6 17 0.00057 29.7 3.1 45 11-55 7-60 (243)
358 1eto_A FIS, factor for inversi 42.5 40 0.0014 23.3 4.7 27 26-52 68-94 (98)
359 2o03_A Probable zinc uptake re 42.4 17 0.00058 26.5 2.9 22 30-51 27-53 (131)
360 3edp_A LIN2111 protein; APC883 41.9 19 0.00065 29.2 3.4 46 11-56 6-60 (236)
361 2p5t_A Putative transcriptiona 41.6 5.5 0.00019 30.2 0.0 25 27-51 12-36 (158)
362 4a0z_A Transcription factor FA 41.5 25 0.00085 27.7 3.9 40 12-51 7-48 (190)
363 1bja_A Transcription regulator 41.3 34 0.0012 23.7 4.0 34 19-53 21-55 (95)
364 3bwg_A Uncharacterized HTH-typ 40.8 19 0.00066 29.2 3.2 23 31-53 31-53 (239)
365 1xmk_A Double-stranded RNA-spe 40.6 30 0.001 23.0 3.6 36 16-52 13-49 (79)
366 2bnm_A Epoxidase; oxidoreducta 40.4 18 0.00063 28.0 3.0 34 18-51 10-45 (198)
367 3fiw_A Putative TETR-family tr 40.2 13 0.00044 29.4 2.0 52 8-59 20-75 (211)
368 3iwf_A Transcription regulator 40.1 22 0.00076 25.1 3.1 24 29-52 35-58 (107)
369 2qlz_A Transcription factor PF 39.2 19 0.00064 29.4 2.9 24 28-51 24-47 (232)
370 3eet_A Putative GNTR-family tr 39.1 21 0.00072 29.7 3.3 45 10-54 25-78 (272)
371 1ity_A TRF1; helix-turn-helix, 39.0 72 0.0025 20.1 5.8 53 6-58 6-59 (69)
372 2zcm_A Biofilm operon icaabcd 38.9 29 0.00098 26.2 3.9 48 14-61 8-59 (192)
373 3sxy_A Transcriptional regulat 38.8 21 0.00072 28.4 3.1 24 31-54 37-60 (218)
374 2qtq_A Transcriptional regulat 38.7 40 0.0014 25.6 4.8 33 29-61 36-68 (213)
375 3frq_A Repressor protein MPHR( 38.4 28 0.00097 26.3 3.8 49 13-61 8-60 (195)
376 1mzb_A Ferric uptake regulatio 38.4 30 0.001 25.3 3.7 24 30-53 35-63 (136)
377 2di3_A Bacterial regulatory pr 38.2 21 0.00073 28.8 3.1 24 31-54 30-53 (239)
378 3on4_A Transcriptional regulat 37.6 39 0.0013 25.1 4.5 33 29-61 30-62 (191)
379 2lnb_A Z-DNA-binding protein 1 37.5 58 0.002 21.6 4.4 39 15-53 20-58 (80)
380 2g7l_A TETR-family transcripti 37.4 21 0.00071 28.9 2.9 49 9-57 15-67 (243)
381 1l8q_A Chromosomal replication 37.0 37 0.0013 28.6 4.6 48 11-58 255-303 (324)
382 2qlz_A Transcription factor PF 36.9 25 0.00086 28.6 3.3 38 18-55 166-204 (232)
383 3c7j_A Transcriptional regulat 36.6 24 0.00081 28.7 3.1 23 31-53 51-73 (237)
384 1ais_B TFB TFIIB, protein (tra 36.5 51 0.0018 25.6 5.1 46 13-58 145-194 (200)
385 3rkx_A Biotin-[acetyl-COA-carb 36.5 52 0.0018 28.1 5.4 40 16-56 5-46 (323)
386 3ihu_A Transcriptional regulat 36.1 22 0.00077 28.3 2.9 44 10-53 12-63 (222)
387 3dew_A Transcriptional regulat 36.0 14 0.00047 28.2 1.5 32 29-60 28-59 (206)
388 2g7g_A RHA04620, putative tran 35.9 24 0.00083 27.7 3.1 49 11-59 9-59 (213)
389 3bqz_B HTH-type transcriptiona 35.8 14 0.00048 27.9 1.5 35 29-63 22-56 (194)
390 2xig_A Ferric uptake regulatio 35.5 44 0.0015 24.9 4.3 23 30-52 43-70 (150)
391 2hs5_A Putative transcriptiona 35.4 25 0.00087 28.5 3.1 24 31-54 53-76 (239)
392 3lwf_A LIN1550 protein, putati 35.0 70 0.0024 24.2 5.4 40 12-51 21-66 (159)
393 2i10_A Putative TETR transcrip 34.6 39 0.0013 25.9 4.1 44 16-59 14-61 (202)
394 3dcf_A Transcriptional regulat 34.5 17 0.00059 28.0 1.9 48 16-63 33-85 (218)
395 1k78_A Paired box protein PAX5 34.5 1E+02 0.0035 22.4 6.3 43 10-53 88-142 (149)
396 3qkx_A Uncharacterized HTH-typ 34.5 14 0.00046 27.8 1.2 32 29-60 28-59 (188)
397 3vpr_A Transcriptional regulat 34.1 23 0.0008 26.7 2.6 29 29-57 23-51 (190)
398 2guh_A Putative TETR-family tr 34.0 19 0.00065 28.2 2.1 46 19-64 45-94 (214)
399 1b9m_A Protein (mode); DNA-bin 33.4 39 0.0013 27.6 4.0 38 22-59 27-64 (265)
400 3lwj_A Putative TETR-family tr 33.3 14 0.00048 28.2 1.2 35 29-63 32-66 (202)
401 3gzi_A Transcriptional regulat 33.3 17 0.0006 28.0 1.8 34 30-63 38-71 (218)
402 2d6y_A Putative TETR family re 32.9 21 0.00072 27.5 2.2 32 29-60 28-59 (202)
403 2rae_A Transcriptional regulat 32.9 49 0.0017 25.1 4.4 43 16-58 20-66 (207)
404 2v57_A TETR family transcripti 32.8 15 0.0005 27.8 1.2 34 28-61 31-64 (190)
405 3lhq_A Acrab operon repressor 32.7 15 0.0005 28.4 1.2 35 29-63 34-68 (220)
406 3eyy_A Putative iron uptake re 32.6 1.2E+02 0.0042 22.2 6.4 16 121-136 89-104 (145)
407 2qko_A Possible transcriptiona 32.3 17 0.00059 28.2 1.6 42 19-60 34-79 (215)
408 3egq_A TETR family transcripti 32.3 31 0.0011 25.4 3.0 31 30-60 25-55 (170)
409 3col_A Putative transcription 32.1 21 0.00071 26.8 2.0 32 29-60 30-61 (196)
410 2jj7_A Hemolysin II regulatory 31.9 18 0.00061 27.2 1.6 32 29-60 27-58 (186)
411 3sjm_A Telomeric repeat-bindin 31.6 96 0.0033 19.4 5.3 51 5-55 6-57 (64)
412 3c2b_A Transcriptional regulat 31.3 19 0.00066 27.9 1.7 31 29-59 35-65 (221)
413 1o57_A PUR operon repressor; p 31.3 96 0.0033 26.0 6.2 45 15-59 5-53 (291)
414 2hxo_A Putative TETR-family tr 31.1 15 0.00052 29.6 1.1 52 8-59 11-66 (237)
415 2g7s_A Transcriptional regulat 30.8 16 0.00055 27.5 1.1 35 29-63 28-62 (194)
416 2yve_A Transcriptional regulat 30.6 17 0.00057 27.6 1.2 33 29-61 24-56 (185)
417 1pb6_A Hypothetical transcript 30.5 18 0.00061 27.8 1.4 32 29-60 38-69 (212)
418 3cwr_A Transcriptional regulat 30.4 15 0.00052 28.0 0.9 32 29-60 37-68 (208)
419 1ylf_A RRF2 family protein; st 30.3 54 0.0019 24.3 4.0 33 20-52 17-53 (149)
420 3bqy_A Putative TETR family tr 30.2 32 0.0011 27.0 2.8 46 14-59 3-52 (209)
421 4aci_A HTH-type transcriptiona 30.2 16 0.00053 27.7 0.9 33 29-61 34-66 (191)
422 3kz9_A SMCR; transcriptional r 30.0 17 0.00057 27.7 1.1 32 30-61 38-69 (206)
423 1fc3_A SPO0A; response regulat 30.0 52 0.0018 23.8 3.7 32 29-60 48-79 (120)
424 3f1b_A TETR-like transcription 29.9 18 0.0006 27.5 1.2 33 29-61 34-66 (203)
425 3knw_A Putative transcriptiona 29.9 17 0.00059 27.9 1.2 33 29-61 34-66 (212)
426 2hku_A A putative transcriptio 29.6 23 0.00079 27.4 1.9 33 29-61 39-71 (215)
427 4g6q_A Putative uncharacterize 29.4 56 0.0019 25.2 4.1 34 17-51 24-59 (182)
428 2eh3_A Transcriptional regulat 29.2 20 0.00069 26.8 1.5 32 29-60 22-53 (179)
429 2zb9_A Putative transcriptiona 28.8 16 0.00056 28.2 0.8 32 29-60 43-74 (214)
430 2dg8_A Putative TETR-family tr 28.6 15 0.00052 28.0 0.6 34 29-62 29-62 (193)
431 3vp5_A Transcriptional regulat 28.6 21 0.00072 27.2 1.5 32 29-60 32-63 (189)
432 2y2z_A SIM16, SIMR, putative r 28.5 29 0.00098 28.6 2.4 43 12-54 26-72 (267)
433 2pz9_A Putative regulatory pro 28.5 25 0.00084 27.6 1.9 47 14-60 31-81 (226)
434 3npi_A TETR family regulatory 28.2 35 0.0012 27.2 2.8 47 13-59 18-68 (251)
435 1p2f_A Response regulator; DRR 28.1 44 0.0015 25.9 3.4 46 11-58 144-196 (220)
436 3s5r_A Transcriptional regulat 28.0 22 0.00075 27.3 1.5 34 29-62 30-63 (216)
437 2qwt_A Transcriptional regulat 27.9 20 0.00067 27.5 1.2 33 29-61 32-64 (196)
438 1zk8_A Transcriptional regulat 27.8 21 0.00071 26.8 1.3 48 14-61 9-60 (183)
439 1al3_A Cys regulon transcripti 27.8 13 0.00043 31.3 0.0 38 22-59 9-46 (324)
440 2w57_A Ferric uptake regulatio 27.7 42 0.0014 25.0 3.0 23 30-52 34-61 (150)
441 3bru_A Regulatory protein, TET 27.5 20 0.00069 27.8 1.2 44 19-62 36-83 (222)
442 2xvc_A ESCRT-III, SSO0910; cel 27.5 96 0.0033 19.2 3.9 31 23-53 16-49 (59)
443 3l7w_A Putative uncharacterize 27.5 61 0.0021 22.5 3.7 37 20-56 12-53 (108)
444 1u3e_M HNH homing endonuclease 27.5 25 0.00084 27.1 1.6 26 26-51 132-157 (174)
445 3dpj_A Transcription regulator 27.3 23 0.00078 26.8 1.5 33 29-61 28-60 (194)
446 2wui_A MEXZ, transcriptional r 27.1 22 0.00074 27.6 1.3 30 29-58 31-60 (210)
447 2nx4_A Transcriptional regulat 27.0 27 0.00092 26.6 1.9 31 29-59 30-60 (194)
448 3bni_A Putative TETR-family tr 27.0 21 0.00071 28.2 1.2 33 29-61 63-95 (229)
449 1p4x_A Staphylococcal accessor 26.8 58 0.002 26.7 3.9 45 11-55 30-76 (250)
450 3vib_A MTRR; helix-turn-helix 26.8 21 0.00072 27.5 1.2 31 29-59 30-60 (210)
451 2id3_A Putative transcriptiona 26.5 25 0.00084 27.6 1.5 41 19-59 46-90 (225)
452 2o7t_A Transcriptional regulat 26.3 19 0.00066 27.5 0.8 33 30-62 29-61 (199)
453 3f0c_A TETR-molecule A, transc 26.3 22 0.00074 27.4 1.2 34 29-62 31-64 (216)
454 2rek_A Putative TETR-family tr 26.2 19 0.00065 27.5 0.8 33 29-61 35-67 (199)
455 3bhq_A Transcriptional regulat 26.1 32 0.0011 26.5 2.2 32 29-60 32-63 (211)
456 2hyt_A TETR-family transcripti 25.9 29 0.00099 26.4 1.8 32 29-60 32-63 (197)
457 3p7n_A Sensor histidine kinase 25.7 94 0.0032 24.6 5.1 38 21-58 205-242 (258)
458 2zcx_A SCO7815, TETR-family tr 25.7 37 0.0013 26.9 2.5 34 29-62 43-76 (231)
459 2ibd_A Possible transcriptiona 25.6 23 0.00079 27.2 1.2 32 29-60 34-65 (204)
460 3rh2_A Hypothetical TETR-like 25.5 20 0.00069 27.6 0.8 32 29-60 23-54 (212)
461 3anp_C Transcriptional repress 25.4 21 0.00073 27.4 0.9 32 29-60 29-60 (204)
462 3kkc_A TETR family transcripti 25.3 11 0.00036 28.2 -0.9 30 30-59 33-62 (177)
463 3o60_A LIN0861 protein; PSI, M 25.2 19 0.00066 27.6 0.7 45 16-60 21-71 (185)
464 3mnl_A KSTR, transcriptional r 25.2 17 0.0006 27.6 0.4 32 29-60 40-71 (203)
465 2f07_A YVDT; helix-turn-helix, 25.1 31 0.0011 26.3 1.9 27 29-55 30-56 (197)
466 3qbm_A TETR transcriptional re 25.1 18 0.00061 27.4 0.4 32 29-60 27-58 (199)
467 2qib_A TETR-family transcripti 24.9 21 0.00072 28.2 0.8 32 29-60 33-64 (231)
468 3cjd_A Transcriptional regulat 24.8 21 0.00073 27.4 0.8 33 29-61 32-64 (198)
469 2xpw_A Tetracycline repressor 24.7 32 0.0011 26.9 1.9 46 13-58 3-52 (207)
470 1z0x_A Transcriptional regulat 24.7 36 0.0012 26.8 2.3 44 14-57 6-54 (220)
471 3sqn_A Conserved domain protei 24.6 58 0.002 29.6 3.8 33 27-59 106-138 (485)
472 3b81_A Transcriptional regulat 24.6 17 0.00056 27.7 0.1 33 29-61 31-63 (203)
473 2hqr_A Putative transcriptiona 24.6 51 0.0017 25.6 3.1 46 12-59 143-197 (223)
474 3lsj_A DEST; transcriptional r 24.4 19 0.00065 28.0 0.5 43 19-61 17-64 (220)
475 3hta_A EBRA repressor; TETR fa 24.4 25 0.00086 27.4 1.2 34 29-62 48-81 (217)
476 3pas_A TETR family transcripti 24.4 22 0.00075 26.7 0.8 35 29-63 28-62 (195)
477 3ljl_A Transcriptional regulat 24.4 19 0.00065 26.5 0.4 31 30-60 35-65 (156)
478 3ilc_A BCL-2-like protein 1; a 24.4 29 0.001 27.5 1.5 51 9-59 77-133 (197)
479 1wi9_A Protein C20ORF116 homol 24.2 34 0.0011 22.4 1.5 26 21-46 11-38 (72)
480 2ras_A Transcriptional regulat 24.2 18 0.00061 27.9 0.3 35 29-63 31-65 (212)
481 1vi0_A Transcriptional regulat 24.1 22 0.00077 27.4 0.8 33 29-61 28-60 (206)
482 3e7q_A Transcriptional regulat 24.0 17 0.00059 27.8 0.2 35 29-63 34-68 (215)
483 3k69_A Putative transcription 24.0 62 0.0021 24.5 3.4 40 12-51 6-50 (162)
484 2w3l_A BCL2-XL, apoptosis regu 23.9 45 0.0016 24.7 2.5 46 14-59 26-77 (144)
485 3c19_A Uncharacterized protein 23.9 42 0.0015 26.3 2.3 28 89-127 38-65 (186)
486 2ra5_A Putative transcriptiona 23.8 17 0.00057 29.8 0.0 24 31-54 42-65 (247)
487 1sgm_A Putative HTH-type trans 23.8 19 0.00066 27.0 0.4 33 29-61 26-59 (191)
488 2q24_A Putative TETR family tr 23.6 23 0.0008 26.8 0.9 31 30-60 35-65 (194)
489 2h9b_A HTH-type transcriptiona 23.6 17 0.00058 30.2 0.0 38 22-59 8-45 (312)
490 3nxc_A HTH-type protein SLMA; 23.5 17 0.00059 27.9 0.0 48 14-61 24-77 (212)
491 3mwm_A ZUR, putative metal upt 23.5 44 0.0015 24.5 2.4 16 121-136 86-101 (139)
492 1t33_A Putative transcriptiona 23.5 34 0.0012 26.4 1.9 31 30-60 32-62 (224)
493 2xdn_A HTH-type transcriptiona 23.3 26 0.00088 27.0 1.1 32 29-60 31-62 (210)
494 2gen_A Probable transcriptiona 23.3 32 0.0011 26.2 1.6 32 29-60 27-58 (197)
495 3g1o_A Transcriptional regulat 23.3 52 0.0018 26.2 3.0 45 19-63 49-97 (255)
496 2dql_A PEX protein; circadian 23.2 1.5E+02 0.0052 20.7 5.2 45 10-54 15-67 (115)
497 2np5_A Transcriptional regulat 23.1 50 0.0017 25.2 2.7 45 16-60 12-60 (203)
498 3bjb_A Probable transcriptiona 23.1 25 0.00085 27.2 0.9 30 30-59 43-72 (207)
499 1ngr_A P75 low affinity neurot 22.8 50 0.0017 22.1 2.3 36 11-50 7-42 (85)
500 2h98_A HTH-type transcriptiona 22.7 18 0.00061 30.2 0.0 37 23-59 9-45 (313)
No 1
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=97.18 E-value=0.0009 Score=40.76 Aligned_cols=44 Identities=11% Similarity=-0.072 Sum_probs=35.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHH
Q psy13113 8 ARGVIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 8 ~~~~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
+|+..++.+++..+... +..|.+..++|..+|||.+||++++++
T Consensus 1 GR~~~l~~~~~~~i~~~-~~~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 1 PRGSALSDTERAQLDVM-KLLNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCSCCCCHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 45667888887666554 467899999999999999999998864
No 2
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=97.07 E-value=0.0011 Score=42.64 Aligned_cols=47 Identities=23% Similarity=0.219 Sum_probs=40.3
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCC----hHhhhhhccccHhHHHHHHHHHHH
Q psy13113 8 ARGVIHSPVVKLLAVLRFYATGNF----QIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 8 ~~~~~~~~~~~l~~~L~~L~~~~~----~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
+++...|++.++-+ +.++..+.+ ...+|..|||+.+|+++|++..-.
T Consensus 1 g~r~~ys~efK~~~-~~~~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~~~ 51 (59)
T 2glo_A 1 GSRRIFTPHFKLQV-LESYRNDNDCKGNQRATARKYNIHRRQIQKWLQCESN 51 (59)
T ss_dssp CCCCCCCHHHHHHH-HHHHHHCTTTTTCHHHHHHHTTSCHHHHHHHHTTHHH
T ss_pred CCCCcCCHHHHHHH-HHHHHcCCCcchHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45678999999988 778888888 999999999999999999875443
No 3
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=96.30 E-value=0.005 Score=37.67 Aligned_cols=43 Identities=16% Similarity=0.105 Sum_probs=31.8
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHH
Q psy13113 9 RGVIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 9 ~~~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
++..++.++.- .++.++..|.+..++|..+|||.+|+++++++
T Consensus 2 Rp~~~~~~~~~-~i~~l~~~g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 2 RPRAINKHEQE-QISRLLEKGHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp CCCSSCTTHHH-HHHHHHHTTCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCCCCCHHHHH-HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 44556665433 33344667899999999999999999998753
No 4
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=96.27 E-value=0.0073 Score=42.73 Aligned_cols=45 Identities=18% Similarity=0.049 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHhhc-CCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 10 GVIHSPVVKLLAVLRFYAT-GNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 10 ~~~~~~~~~l~~~L~~L~~-~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
+...|++.++.+.-.++.. |.+...+|..||||.+|+++|+++.-
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHHh
Confidence 4678999999888888877 89999999999999999999987653
No 5
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=95.85 E-value=0.022 Score=39.41 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHH-hh--cCCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 11 VIHSPVVKLLAVLRF-YA--TGNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~-L~--~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
..+|+.++-.+.|+| |. .+.++.++|..+|+|.+||...+.+....|-.
T Consensus 17 ~~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 17 KTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred HhCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 358999999999988 44 78899999999999999999999988887754
No 6
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=95.85 E-value=0.024 Score=37.70 Aligned_cols=48 Identities=13% Similarity=0.086 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHh-h--cCCChHhhhhhccccHhHHHHHHHHHHHHHH
Q psy13113 11 VIHSPVVKLLAVLRFY-A--TGNFQIDSEDYHDISQSTICRLVAKVSEELA 58 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~L-~--~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~ 58 (286)
..+|+.++-.+.|+|. . .|.++.++|..+|+|.+||.....+....|-
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4689999999999884 3 6799999999999999999999999988887
No 7
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=95.85 E-value=0.019 Score=40.57 Aligned_cols=47 Identities=11% Similarity=-0.093 Sum_probs=42.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHH
Q psy13113 7 DARGVIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKV 53 (286)
Q Consensus 7 ~~~~~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v 53 (286)
.......+.+.++.+++.++..+.+..++|..|+||.+++.+|.+.+
T Consensus 27 ~~~~rrWs~~~Kl~VV~~~~~g~~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 27 PLDTRRWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp CSSCCCCCHHHHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred hHhhhccCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 34566799999999999999999999999999999999999988765
No 8
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=95.75 E-value=0.016 Score=38.05 Aligned_cols=49 Identities=16% Similarity=0.136 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHH-h--hcCCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 11 VIHSPVVKLLAVLRF-Y--ATGNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~-L--~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
..+|+.++-.+.|+| + ..|.++.++|..+|+|.+||.....+....|-.
T Consensus 4 ~~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 4 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred HcCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 358999999988888 3 478999999999999999999999888777654
No 9
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=95.73 E-value=0.021 Score=39.53 Aligned_cols=45 Identities=16% Similarity=0.119 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 10 GVIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 10 ~~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
+...+.+.+..+.-.+ ..|.+...+|..||||.+|+++|+++.-.
T Consensus 20 ~~~ys~e~k~~~v~~~-~~g~s~~~iA~~~gIs~sTl~rW~k~~~~ 64 (87)
T 2elh_A 20 LRSLTPRDKIHAIQRI-HDGESKASVARDIGVPESTLRGWCKNEDK 64 (87)
T ss_dssp CSSCCHHHHHHHHHHH-HHTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-HCCCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 4578888876655544 57899999999999999999999876544
No 10
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=95.62 E-value=0.034 Score=36.29 Aligned_cols=48 Identities=17% Similarity=0.043 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 11 VIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
..+|+.++-++.|+|+ .|.++.++|..+|+|.+||.+.+++....|..
T Consensus 14 ~~L~~~~r~il~l~~~-~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 14 ADLTTDQREALLLTQL-LGLSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp TSSCHHHHHHHHHHHT-SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred HhCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4588888888777664 67999999999999999999999998888765
No 11
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=95.24 E-value=0.049 Score=37.98 Aligned_cols=48 Identities=13% Similarity=0.050 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 12 IHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
.++..++-++.|+|+ .|.++.++|..+|+|.+||...+.+....|-..
T Consensus 37 ~L~~~~r~vl~l~~~-~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 37 QLSAEHRAVIQRSYY-RGWSTAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp TSCHHHHHHHHHHHT-SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 477888888877765 678999999999999999999999888877653
No 12
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=95.06 E-value=0.048 Score=38.81 Aligned_cols=48 Identities=17% Similarity=0.115 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHh---hcCCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 12 IHSPVVKLLAVLRFY---ATGNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L---~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
.+|+.++-.+.|+|. ..+.++.++|..+|+|.+||.....+....|-.
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~ 69 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 69 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 589999999999886 367899999999999999999999988888765
No 13
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=94.97 E-value=0.016 Score=36.17 Aligned_cols=42 Identities=10% Similarity=-0.053 Sum_probs=30.5
Q ss_pred CCCCCC--HHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 9 RGVIHS--PVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 9 ~~~~~~--~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
++..++ ++..-.+... +..|.++.++|..+|+|.+||+++++
T Consensus 10 ~~~~l~~~~~~~~~i~~l-~~~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 10 VRYYVESEDDLVSVAHEL-AKMGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp EEEEECSHHHHHHHHHHH-HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHhcCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 333455 5444333333 56889999999999999999999875
No 14
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=94.94 E-value=0.044 Score=41.09 Aligned_cols=45 Identities=11% Similarity=-0.093 Sum_probs=37.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHH
Q psy13113 8 ARGVIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKV 53 (286)
Q Consensus 8 ~~~~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v 53 (286)
++...++.+++..+...+ ..|.+...+|..+|+|.+||++++++.
T Consensus 2 gr~~~~s~~~r~~i~~~~-~~G~s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 2 PRGSALSDTERAQLDVMK-LLNVSLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp CCSCCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHSG
T ss_pred CCcccCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHcc
Confidence 356778888887766554 688999999999999999999998753
No 15
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=94.74 E-value=0.099 Score=34.39 Aligned_cols=49 Identities=10% Similarity=0.033 Sum_probs=40.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 9 RGVIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 9 ~~~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
....+++.++-.+.+ +..|.++.++|..+|+|.+||...+.+....|..
T Consensus 8 ~~~~L~~~e~~il~~--~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 8 SKPLLTKREREVFEL--LVQDKTTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCCCHHHHHHHHH--HTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHH--HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 456688888877766 3788999999999999999999999988877753
No 16
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=94.70 E-value=0.097 Score=39.81 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 10 GVIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 10 ~~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
...++.+.+..+...+ ..|.+...+|..||||.+||++|+++...
T Consensus 30 ~~~~s~e~r~~iv~~~-~~G~s~~~iA~~lgis~~TV~rw~~~~~~ 74 (149)
T 1k78_A 30 GRPLPDVVRQRIVELA-HQGVRPCDISRQLRVSHGCVSKILGRYYE 74 (149)
T ss_dssp TSCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4578999888877666 57899999999999999999999987643
No 17
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=94.69 E-value=0.029 Score=40.37 Aligned_cols=44 Identities=16% Similarity=0.053 Sum_probs=37.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcC-------CChHhhhhhccccHhHHHHHHHH
Q psy13113 9 RGVIHSPVVKLLAVLRFYATG-------NFQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 9 ~~~~~~~~~~l~~~L~~L~~~-------~~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
++...|++.++.++-.++..+ .+...+|..||||.+|+++|++.
T Consensus 3 ~~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 3 KNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 356789999998888887765 78999999999999999998875
No 18
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=94.63 E-value=0.071 Score=39.60 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCChH-hhhhhccccHhHHHHHHHHHHHHHH
Q psy13113 9 RGVIHSPVVKLLAVLRFYATGNFQI-DSEDYHDISQSTICRLVAKVSEELA 58 (286)
Q Consensus 9 ~~~~~~~~~~l~~~L~~L~~~~~~~-~l~~~Fgvs~stv~~~~~~v~~~l~ 58 (286)
.+..++.+.++-+.-.+..+|.+.. ++|..||||.+|++++++.-...+.
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs~stl~~~~~~~~~~~~ 54 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILA 54 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHHHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcHHHHHHHhCCCHHHHHHHHhchhhhcc
Confidence 4678999999988877767776655 9999999999999999997665544
No 19
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=94.48 E-value=0.039 Score=39.36 Aligned_cols=45 Identities=16% Similarity=0.034 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHH-----hhcC-CChHhhhhhccccHhHHHHHHHHHHHHHH
Q psy13113 13 HSPVVKLLAVLRF-----YATG-NFQIDSEDYHDISQSTICRLVAKVSEELA 58 (286)
Q Consensus 13 ~~~~~~l~~~L~~-----L~~~-~~~~~l~~~Fgvs~stv~~~~~~v~~~l~ 58 (286)
+++.++-++.++| |..| .+|+++|...|+|.+||+|+ ++.+.-+.
T Consensus 36 LT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~~l~ 86 (101)
T 1jhg_A 36 LTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLKAAP 86 (101)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHHHcc
Confidence 5666665554443 3356 89999999999999999999 65554443
No 20
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=94.39 E-value=0.087 Score=38.47 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 10 GVIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 10 ~~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
...++.+.+..+...+ ..|.+...+|..||+|.+||++|+++..
T Consensus 15 ~~~~s~~~r~~i~~~~-~~g~s~~~ia~~lgis~~Tv~~w~~~~~ 58 (128)
T 1pdn_C 15 GRPLPNNIRLKIVEMA-ADGIRPCVISRQLRVSHGCVSKILNRYQ 58 (128)
T ss_dssp TSCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4568888887776655 5789999999999999999999998654
No 21
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=94.23 E-value=0.11 Score=36.42 Aligned_cols=47 Identities=15% Similarity=0.072 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 11 VIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
..++..++-++.|+ ..|.+++++|..+|+|.+||...+.+....|..
T Consensus 26 ~~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 26 SGLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp -CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred hcCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 46888888887774 889999999999999999999999988887764
No 22
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=94.10 E-value=0.087 Score=35.88 Aligned_cols=48 Identities=19% Similarity=0.062 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 10 GVIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 10 ~~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
-..++..++-++.| +..|.++.++|..+|+|.+||...+.+....|..
T Consensus 19 ~~~Lt~~e~~vl~l--~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 19 VNQLTPRERDILKL--IAQGLPNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GGGSCHHHHHHHHH--HTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred HccCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 34688888877777 3789999999999999999999999888777653
No 23
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=94.06 E-value=0.07 Score=37.55 Aligned_cols=52 Identities=12% Similarity=0.013 Sum_probs=45.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCChHhhhhhc-cccHhHHHHHHHHHHHHHHh
Q psy13113 8 ARGVIHSPVVKLLAVLRFYATGNFQIDSEDYH-DISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 8 ~~~~~~~~~~~l~~~L~~L~~~~~~~~l~~~F-gvs~stv~~~~~~v~~~l~~ 59 (286)
.|...+...-|+++.|.+--++.++..++..| |.+.+||...++.+...+..
T Consensus 25 ~R~~~i~~aRqiamyL~r~~t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~~~ 77 (94)
T 1j1v_A 25 RRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREE 77 (94)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 34556777889999999999999999999999 89999999999999887753
No 24
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=94.04 E-value=0.11 Score=36.84 Aligned_cols=50 Identities=18% Similarity=0.062 Sum_probs=41.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 8 ARGVIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 8 ~~~~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
.....+++.++-.+.| +..|.+++++|...|+|.+||...+.++...|..
T Consensus 30 ~~~~~Lt~re~~Vl~l--~~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 30 YGDKRLSPKESEVLRL--FAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp CSSSSCCHHHHHHHHH--HHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred cccCCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 3467789988876655 4589999999999999999999999988877753
No 25
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=93.90 E-value=0.12 Score=37.55 Aligned_cols=48 Identities=8% Similarity=0.054 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 12 IHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
.+|+.++-++.|+|+ .|.++.++|..+|+|.+||...+++....|...
T Consensus 22 ~L~~~~r~vl~l~y~-~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 22 LLTDKQMNYIELYYA-DDYSLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp GSCHHHHHHHHHHHH-TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 578888877766654 678999999999999999999999998888764
No 26
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=93.43 E-value=0.12 Score=32.72 Aligned_cols=34 Identities=15% Similarity=0.051 Sum_probs=30.4
Q ss_pred hhcCCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 26 YATGNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 26 L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
+..|.+++++|..+|+|.+||...+.++...|..
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 6889999999999999999999999988877653
No 27
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=93.40 E-value=0.17 Score=35.96 Aligned_cols=42 Identities=10% Similarity=0.094 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHH
Q psy13113 17 VKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELA 58 (286)
Q Consensus 17 ~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~ 58 (286)
..+-++-.|+-.|.++.++|..+|+|+++|++.+.+.-+...
T Consensus 22 ~~~~~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~ 63 (101)
T 2w7n_A 22 QTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVHRVWAAFE 63 (101)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 445567778889999999999999999999999998877754
No 28
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=93.10 E-value=0.14 Score=34.21 Aligned_cols=44 Identities=18% Similarity=0.016 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHH
Q psy13113 13 HSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELA 58 (286)
Q Consensus 13 ~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~ 58 (286)
+++.++-++.| + ..|.++.++|..+|+|.+||...+.+....|-
T Consensus 17 L~~~e~~vl~l-~-~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 17 LSERERQVLSA-V-VAGLPNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HCHHHHHHHHH-H-TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 56666666666 3 78999999999999999999999988877665
No 29
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=93.00 E-value=0.21 Score=34.67 Aligned_cols=49 Identities=14% Similarity=0.108 Sum_probs=37.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHH
Q psy13113 8 ARGVIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELA 58 (286)
Q Consensus 8 ~~~~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~ 58 (286)
.....++..++-.+.| +..|.++.++|...|+|.+||...+.++..-|.
T Consensus 25 ~~~~~Lt~rE~~Vl~l--~~~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 25 KEQDVLTPRECLILQE--VEKGFTNQEIADALHLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp ----CCCHHHHHHHHH--HHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred ccccCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 3456688877766555 449999999999999999999999998877664
No 30
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=92.85 E-value=0.22 Score=39.25 Aligned_cols=51 Identities=14% Similarity=0.070 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHhhccc
Q psy13113 12 IHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAKCHQQ 63 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~~~ 63 (286)
.+|+.++-++.|+++ .|.++.++|...|+|.+||...+.+....|-..+..
T Consensus 140 ~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l~~ 190 (194)
T 1or7_A 140 SLPEDLRMAITLREL-DGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQP 190 (194)
T ss_dssp HSCHHHHHHHHHHHT-TCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred hCCHHHHHHhHHHHH-cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777766 578999999999999999999999998888765443
No 31
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=92.71 E-value=0.18 Score=38.76 Aligned_cols=43 Identities=16% Similarity=0.143 Sum_probs=35.8
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHH
Q psy13113 9 RGVIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 9 ~~~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
+...++.+.+..+...+ ..|.+...+|..||||.+||++|+++
T Consensus 22 ~~~~~s~e~r~~ii~l~-~~G~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 22 NGRPLPEVVRQRIVDLA-HQGVRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp SSCSSCHHHHHHHHHHH-HHTCCHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34578888887776655 57899999999999999999998863
No 32
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=92.71 E-value=0.074 Score=40.53 Aligned_cols=52 Identities=17% Similarity=0.087 Sum_probs=42.8
Q ss_pred CCCCCCCCHHHHHHHHHHH--hhcCCChHhhhh----hc--cccHhHHHHHHHHHHHHHH
Q psy13113 7 DARGVIHSPVVKLLAVLRF--YATGNFQIDSED----YH--DISQSTICRLVAKVSEELA 58 (286)
Q Consensus 7 ~~~~~~~~~~~~l~~~L~~--L~~~~~~~~l~~----~F--gvs~stv~~~~~~v~~~l~ 58 (286)
...+..++.++++.+..++ -..+.++.+||. .| |||++||+++++.=-..+.
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~~~l~ 65 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKYSYLD 65 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHHHHTT
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHHHHhh
Confidence 4568899999999999998 335568889999 99 9999999999987555443
No 33
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=92.64 E-value=0.14 Score=35.52 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 11 VIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
..+++.++-++.| +..|.++.++|..+|+|.+||...+.+....|..
T Consensus 28 ~~Lt~~e~~vl~l--~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 28 EMLTEREMEILLL--IAKGYSNQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GGCCSHHHHHHHH--HHTTCCTTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 4578877777777 3789999999999999999999999888776653
No 34
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=92.60 E-value=0.24 Score=40.32 Aligned_cols=49 Identities=24% Similarity=0.184 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 11 VIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
..+|+.++-++.|+|+ .|.++.++|..+|+|.+||...+.+....|-..
T Consensus 186 ~~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 186 SKLPEREKLVIQLIFY-EELPAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp TTSCHHHHHHHHHHHT-SCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHh-cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 3588888888888886 579999999999999999999999988887653
No 35
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=92.27 E-value=0.34 Score=35.17 Aligned_cols=49 Identities=6% Similarity=0.087 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHhhc
Q psy13113 12 IHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAKCH 61 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~ 61 (286)
.+|+.++-++.|+| ..|.++.++|..+|+|.+||...+++....|-...
T Consensus 25 ~L~~~~r~vl~l~~-~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 25 LLTNKQRNYLELFY-LEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp GSCHHHHHHHHHHH-TSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 47777777776655 46799999999999999999999999988887643
No 36
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=91.97 E-value=0.21 Score=35.57 Aligned_cols=51 Identities=12% Similarity=-0.031 Sum_probs=44.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 9 RGVIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 9 ~~~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
|...+...-|++|.|.+=-++.++..++..||-+.+||...++.+.+.+.+
T Consensus 30 R~~~i~~aRqiAmYL~r~~t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~~ 80 (101)
T 3pvv_A 30 KTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAE 80 (101)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 444677788999999888899999999999999999999999999888774
No 37
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=90.70 E-value=0.46 Score=33.68 Aligned_cols=42 Identities=10% Similarity=-0.012 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 13 HSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 13 ~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
.....++.++........+..+.+..|+||.+++.+|.+.+.
T Consensus 34 Wva~rK~~VV~~v~~g~lS~~EAa~ry~Is~~ei~~W~r~y~ 75 (101)
T 2oa4_A 34 WVASRKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSALA 75 (101)
T ss_dssp CCHHHHHHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 334479999999999999999999999999999999887654
No 38
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=90.57 E-value=0.43 Score=36.13 Aligned_cols=47 Identities=9% Similarity=0.001 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 12 IHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
.+|+.++-++. + .-.|.++.++|..+|+|.+||...+.+....|-..
T Consensus 109 ~L~~~~r~v~~-~-~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 109 NFSKFEKEVLT-Y-LIRGYSYREIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp HSCHHHHHHHH-H-HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-H-HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 46777776666 4 45789999999999999999999999888877653
No 39
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=90.52 E-value=0.36 Score=36.47 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=35.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCChHhhhhhccc-cHhHHHHHHHHH
Q psy13113 5 SNDARGVIHSPVVKLLAVLRFYATGNFQIDSEDYHDI-SQSTICRLVAKV 53 (286)
Q Consensus 5 ~~~~~~~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgv-s~stv~~~~~~v 53 (286)
...||.+.++.+. .--.+.+++.|.+...++..+|| |.+|+++|+++-
T Consensus 5 ~k~GRPtk~t~e~-~e~I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~~ 53 (140)
T 4dyq_A 5 PKAGRPSDYMPEV-ADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKH 53 (140)
T ss_dssp -----CCSCCTTH-HHHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHHC
T ss_pred CCCCCCCCCCHHH-HHHHHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHcC
Confidence 4456777777653 34466778899999999999999 999999999863
No 40
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=90.07 E-value=0.41 Score=37.31 Aligned_cols=47 Identities=11% Similarity=0.045 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 12 IHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
.+|+.++-++.|+++ .|.++.++|..+|+|.+||...+.+....|-.
T Consensus 135 ~L~~~~r~vl~l~~~-~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 135 RLPEAQRALIERAFF-GDLTHRELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp TSCHHHHHHHHHHHH-SCCSSCCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 467777777777665 57899999999999999999999988877754
No 41
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=89.87 E-value=0.67 Score=32.21 Aligned_cols=48 Identities=13% Similarity=0.077 Sum_probs=37.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhc--CCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 7 DARGVIHSPVVKLLAVLRFYAT--GNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 7 ~~~~~~~~~~~~l~~~L~~L~~--~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
..+-..++.++.+.+.+.+-+. |..+++|+...+++++|+.+++++..
T Consensus 12 ~~k~~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE 61 (91)
T 2dk5_A 12 AGKMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLE 61 (91)
T ss_dssp CCCCCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HhhhcCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3456678887776666665533 78999999999999999999887653
No 42
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=89.69 E-value=0.65 Score=30.41 Aligned_cols=39 Identities=15% Similarity=0.050 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHhhcC-CChHhhhhhccccHhHHHHHHHH
Q psy13113 14 SPVVKLLAVLRFYATG-NFQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 14 ~~~~~l~~~L~~L~~~-~~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
=.+++|..++.-++.| .+....|..|||..+|+..-++.
T Consensus 14 Yte~~L~~Ai~aVr~g~mS~~~Aak~yGVP~sTL~~RVk~ 53 (70)
T 2cob_A 14 YNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKE 53 (70)
T ss_dssp CCHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCccHHHHHHHhCCChHHHHHHHHh
Confidence 4578999999999999 79999999999999999876653
No 43
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=89.22 E-value=0.6 Score=32.71 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=23.7
Q ss_pred hcCCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 27 ATGNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 27 ~~~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
..+.+..+++..+|+|++|++++++...
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~ 61 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLI 61 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4457999999999999999999887554
No 44
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=89.19 E-value=0.64 Score=37.12 Aligned_cols=43 Identities=23% Similarity=0.207 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHH
Q psy13113 11 VIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKV 53 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v 53 (286)
..+|..+.=.-+.+++..|.++.++|..+|||+++|++++...
T Consensus 6 ke~sl~eiG~ria~~y~~g~tQ~eIA~~lGiSr~~VSR~L~~A 48 (192)
T 1zx4_A 6 LQHSIREIGLRLMRMKNDGMSQKDIAAKEGLSQAKVTRALQAA 48 (192)
T ss_dssp CSSCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHHh
Confidence 3456655555555557889999999999999999999988653
No 45
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=88.96 E-value=0.63 Score=31.19 Aligned_cols=39 Identities=13% Similarity=0.128 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhc--CCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 16 VVKLLAVLRFYAT--GNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 16 ~~~l~~~L~~L~~--~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
+++++-+|.-.+. +.+..++|..+|+|++||.+.+.+..
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~ 56 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA 56 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3555555555552 45889999999999999998876553
No 46
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=88.69 E-value=0.66 Score=30.08 Aligned_cols=39 Identities=13% Similarity=0.085 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 16 VVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 16 ~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
+++++-.|.--....+..+||..+|+|++||++.+....
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~ 50 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLK 50 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455555554322346899999999999999999887544
No 47
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=88.59 E-value=0.5 Score=33.77 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=25.8
Q ss_pred HHHhhcCCChHhhhhhccccHhHHHHHHHH
Q psy13113 23 LRFYATGNFQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 23 L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
..+|..|.+|++++...|+|.+|++|+-+.
T Consensus 52 a~lL~~G~SyreIa~~tG~StaTIsRv~r~ 81 (107)
T 3frw_A 52 AKMLTDKRTYLDISEKTGASTATISRVNRS 81 (107)
T ss_dssp HHHHHTTCCHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHCccHHHHHHHHHH
Confidence 445889999999999999999999986553
No 48
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=88.40 E-value=0.73 Score=36.52 Aligned_cols=44 Identities=14% Similarity=-0.045 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHhhcC--CChHhhhhhccccHhHHHHHHHHH
Q psy13113 10 GVIHSPVVKLLAVLRFYATG--NFQIDSEDYHDISQSTICRLVAKV 53 (286)
Q Consensus 10 ~~~~~~~~~l~~~L~~L~~~--~~~~~l~~~Fgvs~stv~~~~~~v 53 (286)
...+|..++=.-.+..|..| .++..+|..+|||++.|+|+++-.
T Consensus 21 ~rplS~yErg~~y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L~~A 66 (189)
T 3mky_B 21 YRPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCINTA 66 (189)
T ss_dssp --CCCHHHHHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCcccCHHHHHHHHCCCHHHHHHHHHHh
Confidence 46799999999999999887 799999999999999999999744
No 49
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=88.31 E-value=0.7 Score=33.72 Aligned_cols=32 Identities=25% Similarity=0.240 Sum_probs=27.9
Q ss_pred HHHHHHhhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 20 LAVLRFYATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 20 ~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
.-.+..|+.|.+|++++...|+|..||+|+-+
T Consensus 66 ~eV~klL~~G~syreIA~~~g~S~aTIsRv~r 97 (119)
T 3kor_A 66 LQVAKMIKQGYTYATIEQESGASTATISRVKR 97 (119)
T ss_dssp HHHHHHHHHTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 44667789999999999999999999998654
No 50
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=88.21 E-value=0.95 Score=30.67 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhc--CCChHhhhhhccccHhHHHHHHHHH
Q psy13113 16 VVKLLAVLRFYAT--GNFQIDSEDYHDISQSTICRLVAKV 53 (286)
Q Consensus 16 ~~~l~~~L~~L~~--~~~~~~l~~~Fgvs~stv~~~~~~v 53 (286)
+++++-.|.-.+- ..+..+||..+|||++||.+.+.+.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~L 51 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSL 51 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4556655554442 3588999999999999999877644
No 51
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=87.95 E-value=0.67 Score=31.29 Aligned_cols=34 Identities=21% Similarity=0.096 Sum_probs=27.8
Q ss_pred HHHHHHHHhhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 18 KLLAVLRFYATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 18 ~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
-|-..|..+..|..+.+||...|||++|++.+++
T Consensus 21 ~~~~kLK~il~GikQ~eLAK~iGIsqsTLSaIen 54 (83)
T 2l1p_A 21 TVRNALKDLLKDMNQSSLAKECPLSQSMISSIVN 54 (83)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHSSSCHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHcCCCHHHHHHHHc
Confidence 3445556666699999999999999999998775
No 52
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=87.88 E-value=0.78 Score=35.25 Aligned_cols=42 Identities=12% Similarity=-0.056 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHHHHHhhc--------CCChHhhhhhccccHhHHHHHHH
Q psy13113 10 GVIHSPVVKLLAVLRFYAT--------GNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 10 ~~~~~~~~~l~~~L~~L~~--------~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
+..++.+.+.++.+.-... +.+..++|...|||++|+++|.+
T Consensus 21 ~r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 21 KQKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp HTTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHH
Confidence 4557888777776543222 57999999999999999999998
No 53
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=87.80 E-value=0.67 Score=32.12 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=28.0
Q ss_pred HHHHHHHhhcC---CChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 19 LLAVLRFYATG---NFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 19 l~~~L~~L~~~---~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
++.+|..-..+ .+..+++..++++++|+++++++...
T Consensus 17 iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 56 (95)
T 2qvo_A 17 ILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEE 56 (95)
T ss_dssp HHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34444444445 78999999999999999999886654
No 54
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=87.57 E-value=0.34 Score=31.41 Aligned_cols=21 Identities=10% Similarity=0.067 Sum_probs=19.1
Q ss_pred ChHhhhhhccccHhHHHHHHH
Q psy13113 31 FQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 31 ~~~~l~~~Fgvs~stv~~~~~ 51 (286)
+..++|...|||.+||+++++
T Consensus 2 T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHc
Confidence 578999999999999999886
No 55
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=87.08 E-value=0.66 Score=32.41 Aligned_cols=26 Identities=15% Similarity=0.064 Sum_probs=23.0
Q ss_pred hcCCChHhhhhhccccHhHHHHHHHH
Q psy13113 27 ATGNFQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 27 ~~~~~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
..+.+..++|..+|||.+||+++++.
T Consensus 18 ~~~~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 18 ETKKTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp HHCCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 34579999999999999999999875
No 56
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=87.06 E-value=0.64 Score=30.10 Aligned_cols=29 Identities=17% Similarity=0.133 Sum_probs=23.0
Q ss_pred HHHhhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 23 LRFYATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 23 L~~L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
|..+....++..+|..+|||+++|+++++
T Consensus 7 Lk~l~~~~sq~~~A~~Lgvsq~aVS~~~~ 35 (65)
T 2cw1_A 7 LKKFVEDKNQEYAARALGLSQKLIEEVLK 35 (65)
T ss_dssp HHHHHTTSCHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHhCCCHHHHHHHHH
Confidence 33334445999999999999999999873
No 57
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=87.02 E-value=1.2 Score=27.97 Aligned_cols=36 Identities=14% Similarity=0.136 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhc--CCChHhhhhhc-----cccHhHHHHHHH
Q psy13113 16 VVKLLAVLRFYAT--GNFQIDSEDYH-----DISQSTICRLVA 51 (286)
Q Consensus 16 ~~~l~~~L~~L~~--~~~~~~l~~~F-----gvs~stv~~~~~ 51 (286)
.++..+.+..+.. ..+..+++..+ +||.+||++.++
T Consensus 4 ~~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 4 GQRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp HHHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 3455544445543 35788999999 999999999887
No 58
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=86.46 E-value=0.57 Score=31.87 Aligned_cols=38 Identities=5% Similarity=0.116 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 15 PVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 15 ~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
..++++..|. ..+.+..+||..+|+|+++|.+.+....
T Consensus 18 ~~~~IL~lL~--~~g~sa~eLAk~LgiSk~aVr~~L~~Le 55 (82)
T 1oyi_A 18 IVCEAIKTIG--IEGATAAQLTRQLNMEKREVNKALYDLQ 55 (82)
T ss_dssp HHHHHHHHHS--SSTEEHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4455555444 4557999999999999999998876553
No 59
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=86.44 E-value=1 Score=35.81 Aligned_cols=44 Identities=11% Similarity=-0.010 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHhhc-------CCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 13 HSPVVKLLAVLRFYAT-------GNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 13 ~~~~~~l~~~L~~L~~-------~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
.+++++++..|..+.. ..+..++|...|+|+.|++|+++++.+.
T Consensus 146 ~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 196 (220)
T 3dv8_A 146 KSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVE 196 (220)
T ss_dssp SCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 5788999999988875 5689999999999999999999877543
No 60
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=86.42 E-value=0.94 Score=31.39 Aligned_cols=28 Identities=7% Similarity=0.045 Sum_probs=23.7
Q ss_pred hcCCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 27 ATGNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 27 ~~~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
....+..+++..+|+|++|+++.++...
T Consensus 41 ~~~~~~~eLa~~l~is~~tv~~~L~~L~ 68 (96)
T 1y0u_A 41 DKGRSEEEIMQTLSLSKKQLDYHLKVLE 68 (96)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5567999999999999999999876543
No 61
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=86.25 E-value=1.4 Score=32.62 Aligned_cols=45 Identities=13% Similarity=-0.053 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 11 VIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
..+++.+-..+...+-..+.+..+++..+|++++|+++.+++...
T Consensus 33 ~~lt~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 77 (142)
T 3ech_A 33 LDLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEG 77 (142)
T ss_dssp CCCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 456766544444433345679999999999999999998886654
No 62
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=86.01 E-value=0.56 Score=35.81 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 11 VIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
..+|+.++-++.|.++ .|.++.++|...|+|.+||...+.+....|-..
T Consensus 92 ~~Lp~~~r~vl~L~~~-~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~ 140 (157)
T 2lfw_A 92 ARMTPLSRQALLLTAM-EGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQ 140 (157)
T ss_dssp TTSCTTHHHHHTTTSS-SCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 4688888888777655 468999999999999999999999888888764
No 63
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=85.86 E-value=1.5 Score=34.15 Aligned_cols=49 Identities=12% Similarity=-0.012 Sum_probs=31.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 7 DARGVIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 7 ~~~~~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
++....++..++-++.+..-....++.++|..+|+|++|+.+.+++..+
T Consensus 9 ~~~~~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~ 57 (171)
T 2ia0_A 9 GSSEIHLDDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQE 57 (171)
T ss_dssp -----CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCcCCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3445556665543333322233469999999999999999998876643
No 64
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=85.81 E-value=1 Score=33.36 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhh---cCCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 16 VVKLLAVLRFYA---TGNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 16 ~~~l~~~L~~L~---~~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
..+++..|+.+. .+.+..++|..+|++++||++.+++...
T Consensus 15 ~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~ 57 (139)
T 2x4h_A 15 EFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEE 57 (139)
T ss_dssp HHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHH
Confidence 455666777663 3459999999999999999998875543
No 65
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=85.78 E-value=0.75 Score=33.71 Aligned_cols=44 Identities=14% Similarity=0.037 Sum_probs=30.3
Q ss_pred CCHH-HHHHHHHHHhhcC-CChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 13 HSPV-VKLLAVLRFYATG-NFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 13 ~~~~-~~l~~~L~~L~~~-~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
++.. .+++..|..-... .+..+++...|+|++||++.+......
T Consensus 24 Lt~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~ 69 (123)
T 3r0a_A 24 LTKADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEK 69 (123)
T ss_dssp CCHHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4443 3344444332222 589999999999999999999877654
No 66
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=85.77 E-value=1.7 Score=30.16 Aligned_cols=30 Identities=10% Similarity=-0.012 Sum_probs=25.4
Q ss_pred hcCCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 27 ATGNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 27 ~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
..+.+..+++..+|++++||++.++.....
T Consensus 32 ~~~~s~~ela~~l~is~~tv~~~l~~L~~~ 61 (109)
T 1sfx_A 32 RGGMRVSEIARELDLSARFVRDRLKVLLKR 61 (109)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 356799999999999999999998876544
No 67
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=85.54 E-value=1.3 Score=29.71 Aligned_cols=31 Identities=13% Similarity=0.049 Sum_probs=23.7
Q ss_pred HHHHhhc--CCChHhhhhhccccHhHHHHHHHH
Q psy13113 22 VLRFYAT--GNFQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 22 ~L~~L~~--~~~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
.|.+|+. ..+..+|+..|+||..|+.+-+..
T Consensus 7 Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~ 39 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQTLNTPQPMINAMLQQ 39 (78)
T ss_dssp HHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 3445543 358899999999999999986653
No 68
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=85.43 E-value=1.5 Score=29.35 Aligned_cols=38 Identities=13% Similarity=0.136 Sum_probs=27.4
Q ss_pred HHHHHHHHHHh-----hcCCChHhhhhhccccHhHHHHHHHHH
Q psy13113 16 VVKLLAVLRFY-----ATGNFQIDSEDYHDISQSTICRLVAKV 53 (286)
Q Consensus 16 ~~~l~~~L~~L-----~~~~~~~~l~~~Fgvs~stv~~~~~~v 53 (286)
.++++-+|.-- +...+.+++|..||+|.+||.+.+...
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~L 48 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQL 48 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34555555544 345689999999999999988877543
No 69
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=85.41 E-value=0.91 Score=28.93 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=22.3
Q ss_pred HhhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 25 FYATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 25 ~L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
....| ++..+|...|+|+++++++++
T Consensus 10 ~~~~g-s~~~~A~~lgis~~~vs~~~~ 35 (67)
T 2pij_A 10 LEEHG-TQSALAAALGVNQSAISQMVR 35 (67)
T ss_dssp HHHTC-CHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHcC-CHHHHHHHHCcCHHHHHHHHc
Confidence 34456 999999999999999999873
No 70
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=85.38 E-value=1.5 Score=33.26 Aligned_cols=42 Identities=14% Similarity=0.083 Sum_probs=29.5
Q ss_pred CCCHHH-HHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHH
Q psy13113 12 IHSPVV-KLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKV 53 (286)
Q Consensus 12 ~~~~~~-~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v 53 (286)
.+++.+ .++..|.....+.+..+||..++++++|+++++++.
T Consensus 28 gLt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~L 70 (151)
T 4aik_A 28 ELTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQL 70 (151)
T ss_dssp CCCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 466654 344444444455677899999999999999987643
No 71
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=85.17 E-value=1.4 Score=32.68 Aligned_cols=44 Identities=5% Similarity=0.013 Sum_probs=34.8
Q ss_pred CCCCCCCHHHHHHHHHHH------hhcCC---ChHhhhhhccccHhHHHHHHH
Q psy13113 8 ARGVIHSPVVKLLAVLRF------YATGN---FQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 8 ~~~~~~~~~~~l~~~L~~------L~~~~---~~~~l~~~Fgvs~stv~~~~~ 51 (286)
++.+.+|..+|+.-.|.. |.-|. +-+.||..||||+.||.+.+.
T Consensus 8 d~~s~~PlY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~ 60 (134)
T 4ham_A 8 NTKSQLPIYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQ 60 (134)
T ss_dssp CTTSSSCHHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHH
Confidence 466778999999888766 34454 567899999999999998665
No 72
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=85.17 E-value=1.3 Score=40.12 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHH-hh--cCCChHhhhhhccccHhHHHHHHHHHHHHHH
Q psy13113 12 IHSPVVKLLAVLRF-YA--TGNFQIDSEDYHDISQSTICRLVAKVSEELA 58 (286)
Q Consensus 12 ~~~~~~~l~~~L~~-L~--~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~ 58 (286)
.|+..++-.+.|+| |. .+.++..+|..+|||..||..+..+....|-
T Consensus 375 ~L~ereR~VI~LRygL~~~e~~TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 375 KLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred hCCHHHHHHHHHHHhccCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 57888888888888 44 5689999999999999999999998888776
No 73
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=84.97 E-value=1.7 Score=33.77 Aligned_cols=46 Identities=15% Similarity=0.071 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 11 VIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
..++..++-++.+..-....++.++|..+|+|++|+.+.+++..+.
T Consensus 23 ~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 23 VPLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRES 68 (171)
T ss_dssp -CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3466655443333333345799999999999999999988766543
No 74
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=84.65 E-value=0.62 Score=32.24 Aligned_cols=41 Identities=12% Similarity=0.180 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhc---CCChHhhhhhccccHhH-HHHHHHHHHHH
Q psy13113 16 VVKLLAVLRFYAT---GNFQIDSEDYHDISQST-ICRLVAKVSEE 56 (286)
Q Consensus 16 ~~~l~~~L~~L~~---~~~~~~l~~~Fgvs~st-v~~~~~~v~~~ 56 (286)
..+.+.+|..+.. +.+..+++..+|++++| +++.+++....
T Consensus 14 ~~~~l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~ 58 (95)
T 2pg4_A 14 LIRILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRA 58 (95)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHC
Confidence 3344555555543 46999999999999999 99998876554
No 75
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=84.63 E-value=1.4 Score=34.67 Aligned_cols=42 Identities=19% Similarity=-0.034 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 10 GVIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 10 ~~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
|..+++-++......++..|.+...+|..+|+|+++|+++++
T Consensus 33 RedL~piE~A~a~~~L~~~G~t~eeiA~~lG~s~s~V~~~Lr 74 (178)
T 1r71_A 33 RNELTPREIADFIGRELAKGKKKGDIAKEIGKSPAFITQHVT 74 (178)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHG
T ss_pred cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 567888888888888888899999999999999999998875
No 76
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=84.42 E-value=1.4 Score=34.67 Aligned_cols=43 Identities=12% Similarity=0.075 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHhhcC-------------CChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 13 HSPVVKLLAVLRFYATG-------------NFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 13 ~~~~~~l~~~L~~L~~~-------------~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
.+++++|+.+|..++.. .+..++|...|+|+.|++|+++++.+
T Consensus 138 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~ 193 (210)
T 3ryp_A 138 LDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLED 193 (210)
T ss_dssp SCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 57889999999988642 36789999999999999999876543
No 77
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=84.17 E-value=2.1 Score=28.51 Aligned_cols=27 Identities=4% Similarity=0.026 Sum_probs=22.5
Q ss_pred cCCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 28 TGNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 28 ~~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
...+..++|..+|+|++||++.+....
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~ 39 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLE 39 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 346899999999999999998876443
No 78
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=84.16 E-value=1.5 Score=32.62 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=28.2
Q ss_pred HHHHHHHHHh---hcCCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 17 VKLLAVLRFY---ATGNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 17 ~~l~~~L~~L---~~~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
+..+..|+.+ ..+.+..++|..+|+|++||++.++...
T Consensus 7 ~~~L~~i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le 47 (142)
T 1on2_A 7 EMYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLD 47 (142)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4444444444 3567999999999999999999887543
No 79
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=84.16 E-value=1.4 Score=30.49 Aligned_cols=28 Identities=14% Similarity=0.050 Sum_probs=24.3
Q ss_pred cCCChHhh----hhhccccHhHHHHHHHHHHH
Q psy13113 28 TGNFQIDS----EDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 28 ~~~~~~~l----~~~Fgvs~stv~~~~~~v~~ 55 (286)
.+.+..++ +..++++++|+++.+++...
T Consensus 21 ~~~~~~el~~~la~~l~is~~tvs~~l~~Le~ 52 (99)
T 1tbx_A 21 EGIATYDLYKKVNAEFPMSTATFYDAKKFLIQ 52 (99)
T ss_dssp TTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 35688899 99999999999999988776
No 80
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=84.11 E-value=1.8 Score=31.99 Aligned_cols=43 Identities=16% Similarity=-0.059 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 11 VIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
..+++.+..++...+ ..+.+..+++..+|++++|+++.+++..
T Consensus 33 ~~l~~~~~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le 75 (146)
T 2gxg_A 33 LNLSYLDFLVLRATS-DGPKTMAYLANRYFVTQSAITASVDKLE 75 (146)
T ss_dssp TTCCHHHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHH
Confidence 346665443333333 6667999999999999999999876443
No 81
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=83.92 E-value=2.2 Score=31.63 Aligned_cols=44 Identities=11% Similarity=-0.059 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 11 VIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
..+++.+..++...+-..+.+..+++..+|++++|+++.+++..
T Consensus 38 ~~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le 81 (150)
T 2rdp_A 38 YPITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRME 81 (150)
T ss_dssp SSSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHH
Confidence 45666543333322224467999999999999999999886544
No 82
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=83.79 E-value=2.3 Score=31.45 Aligned_cols=43 Identities=5% Similarity=-0.102 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHH
Q psy13113 11 VIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKV 53 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v 53 (286)
..+++.+-.++...+-..+.+..+++..+|++++|+++.+++.
T Consensus 27 ~~lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L 69 (145)
T 3g3z_A 27 QDLNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTL 69 (145)
T ss_dssp TTCCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3566655444444344456899999999999999999987644
No 83
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=83.69 E-value=2.2 Score=31.06 Aligned_cols=43 Identities=12% Similarity=0.093 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 12 IHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
.+++.+..++...+-..+.+..+++..+|++++|+++.+++..
T Consensus 26 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~ 68 (138)
T 3bpv_A 26 NLTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLE 68 (138)
T ss_dssp TCCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4565544333333334567999999999999999999876543
No 84
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=83.67 E-value=1.2 Score=35.53 Aligned_cols=43 Identities=14% Similarity=0.097 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHhhc--------------CCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 13 HSPVVKLLAVLRFYAT--------------GNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 13 ~~~~~~l~~~L~~L~~--------------~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
.+++++|+.+|..+.. ..+..++|...|+|+.|++++++++.+
T Consensus 137 ~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 193 (220)
T 2fmy_A 137 KDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKK 193 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 3678899999988763 458899999999999999999987754
No 85
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=83.65 E-value=2.3 Score=31.07 Aligned_cols=45 Identities=13% Similarity=-0.050 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 12 IHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
.++..+..++...+-..+.+..+++..+|++++|+++.+++....
T Consensus 35 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~ 79 (140)
T 2nnn_A 35 GLTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKR 79 (140)
T ss_dssp CCCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 566654433333333346799999999999999999988765543
No 86
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=83.65 E-value=2.2 Score=33.28 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHhhc-------------CCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 12 IHSPVVKLLAVLRFYAT-------------GNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L~~-------------~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
..+++++|+.+|..|+. ..+..++|...|+|+.|++++++++.+.
T Consensus 109 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 166 (195)
T 3b02_A 109 TGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLRRE 166 (195)
T ss_dssp SSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 46789999999998763 2478899999999999999999987654
No 87
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=83.53 E-value=2.5 Score=30.83 Aligned_cols=46 Identities=4% Similarity=-0.013 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 11 VIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
..++..+...+...+-..+.+..+++..+|++++|+++++++....
T Consensus 30 ~~lt~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~ 75 (138)
T 1jgs_A 30 LDITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCK 75 (138)
T ss_dssp TTSCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHHHC
Confidence 3466655433333333456799999999999999999988765543
No 88
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=83.51 E-value=1.7 Score=34.14 Aligned_cols=42 Identities=7% Similarity=-0.013 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHhhc-------------CCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 13 HSPVVKLLAVLRFYAT-------------GNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 13 ~~~~~~l~~~L~~L~~-------------~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
.+++++++-+|..|+. ..+..++|...|+|+.|++|+++++.
T Consensus 135 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~ 189 (207)
T 2oz6_A 135 LDVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLE 189 (207)
T ss_dssp CCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCceecccCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5788999999888764 14778999999999999999988654
No 89
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=83.40 E-value=1 Score=33.51 Aligned_cols=40 Identities=15% Similarity=0.061 Sum_probs=29.0
Q ss_pred CCCHH-HHHHHHHHHh-hcCCChHhhhhhccccHhHHHHHHHH
Q psy13113 12 IHSPV-VKLLAVLRFY-ATGNFQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 12 ~~~~~-~~l~~~L~~L-~~~~~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
.+++. .+++..| ++ ..+.+..+++..+|++++|+++.++.
T Consensus 23 gl~~~~~~il~~L-~~~~~~~t~~ela~~l~~~~stvs~~l~~ 64 (152)
T 1ku9_A 23 GLNKSVGAVYAIL-YLSDKPLTISDIMEELKISKGNVSMSLKK 64 (152)
T ss_dssp TCCHHHHHHHHHH-HHCSSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCChhHHHHHHHH-HHcCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34554 4455555 54 35569999999999999999987753
No 90
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=83.39 E-value=1.8 Score=36.00 Aligned_cols=47 Identities=21% Similarity=0.046 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 11 VIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
..+|+.++-++.|. ..|.++.++|...|+|.+||...+++....|-.
T Consensus 196 ~~L~~~erevl~L~--~~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~~ 242 (258)
T 3clo_A 196 NILSEREKEILRCI--RKGLSSKEIAATLYISVNTVNRHRQNILEKLSV 242 (258)
T ss_dssp TSSCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 57899999888885 499999999999999999999999988877653
No 91
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=83.38 E-value=1.7 Score=30.66 Aligned_cols=29 Identities=10% Similarity=0.043 Sum_probs=24.7
Q ss_pred hcCCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 27 ATGNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 27 ~~~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
..+.+..+++..+|+|++|+++.++...+
T Consensus 37 ~~~~~~~ela~~l~is~stvs~~L~~L~~ 65 (106)
T 1r1u_A 37 VSEASVGHISHQLNLSQSNVSHQLKLLKS 65 (106)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34469999999999999999999887664
No 92
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=83.31 E-value=2.7 Score=30.70 Aligned_cols=44 Identities=18% Similarity=0.090 Sum_probs=30.2
Q ss_pred CCCHHHH-HHHHHHHhhc-CCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 12 IHSPVVK-LLAVLRFYAT-GNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 12 ~~~~~~~-l~~~L~~L~~-~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
.+++.+. ++..|+.-.. +.+..+++..+|++++|+++.+++...
T Consensus 31 ~lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~ 76 (141)
T 3bro_A 31 DLTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEI 76 (141)
T ss_dssp TCCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHH
Confidence 4666543 3334433322 579999999999999999998865543
No 93
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=83.29 E-value=2 Score=31.68 Aligned_cols=46 Identities=11% Similarity=-0.104 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 10 GVIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 10 ~~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
...+++.+-.++...+-..+.+..+++..+|++++|+++.+++...
T Consensus 32 ~~~lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 77 (143)
T 3oop_A 32 SYDVTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLR 77 (143)
T ss_dssp TSSSCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 3456766544443333346679999999999999999998875543
No 94
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=83.24 E-value=2.4 Score=30.45 Aligned_cols=28 Identities=11% Similarity=0.024 Sum_probs=25.3
Q ss_pred cCCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 28 TGNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 28 ~~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
...+..+++..+|+|++|+++.++....
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~ 71 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRN 71 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3689999999999999999999988776
No 95
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=83.22 E-value=2.1 Score=33.59 Aligned_cols=44 Identities=9% Similarity=0.083 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHhhc-------------CCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 13 HSPVVKLLAVLRFYAT-------------GNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 13 ~~~~~~l~~~L~~L~~-------------~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
.+++++|+-+|..|+. ..+..++|...|+|+.|++++++++.+.
T Consensus 117 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 173 (202)
T 2zcw_A 117 QRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELARE 173 (202)
T ss_dssp CCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 5789999999998863 2478899999999999999999877543
No 96
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=82.96 E-value=2 Score=32.06 Aligned_cols=44 Identities=7% Similarity=0.046 Sum_probs=30.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHH
Q psy13113 10 GVIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKV 53 (286)
Q Consensus 10 ~~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v 53 (286)
...+++.+..++...+-..+.+..+++..++++++|+++++++.
T Consensus 42 ~~~l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~L 85 (153)
T 2pex_A 42 ALDLTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRL 85 (153)
T ss_dssp TTTCCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHH
Confidence 34566654433333333345689999999999999999987644
No 97
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=82.85 E-value=2 Score=31.46 Aligned_cols=44 Identities=5% Similarity=-0.114 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 12 IHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
.+++.+..++...+-..+.+..+++..+|++++|+++.+++...
T Consensus 33 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~ 76 (142)
T 2fbi_A 33 GLTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLER 76 (142)
T ss_dssp TCCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 35554443333333334579999999999999999998875544
No 98
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=82.80 E-value=2.1 Score=34.14 Aligned_cols=42 Identities=10% Similarity=0.055 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHhhcC-------------CChHhhhhhccccHhHHHHHHHHHH
Q psy13113 13 HSPVVKLLAVLRFYATG-------------NFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 13 ~~~~~~l~~~L~~L~~~-------------~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
.+++++|+-+|..++.. .+..++|...|+|+.|++|+++++.
T Consensus 158 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR~l~~L~ 212 (230)
T 3iwz_A 158 LDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQ 212 (230)
T ss_dssp CCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 57889999999988642 3688999999999999999887654
No 99
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=82.49 E-value=1.9 Score=35.15 Aligned_cols=43 Identities=14% Similarity=0.141 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHhhc--------------CCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 13 HSPVVKLLAVLRFYAT--------------GNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 13 ~~~~~~l~~~L~~L~~--------------~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
.+++++|+-+|..++. ..+..++|...|+|+.|++|+++++.+
T Consensus 163 ~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~lG~sr~tvsR~l~~L~~ 219 (243)
T 3la7_A 163 RDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLRE 219 (243)
T ss_dssp SSHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 5789999999988752 347899999999999999999876543
No 100
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=82.42 E-value=1.2 Score=30.59 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=23.1
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
+.+..+++..+|+|++|+++.++...+
T Consensus 38 ~~s~~ela~~l~is~~tvs~~l~~L~~ 64 (99)
T 3cuo_A 38 GTSAGELTRITGLSASATSQHLARMRD 64 (99)
T ss_dssp SEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 358899999999999999998876643
No 101
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=82.40 E-value=2.6 Score=31.01 Aligned_cols=43 Identities=12% Similarity=0.076 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 12 IHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
.+++.+..++...+-..+.+..+++..+|++++|+++.+++..
T Consensus 30 ~l~~~~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~ 72 (145)
T 2a61_A 30 GITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLE 72 (145)
T ss_dssp TCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHH
Confidence 3555443333322234567999999999999999999886543
No 102
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=82.39 E-value=2.4 Score=31.42 Aligned_cols=46 Identities=13% Similarity=0.024 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 11 VIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
..+++.+-.++...+-..+.+..+++..+|++++|+++.+++....
T Consensus 36 ~~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~ 81 (148)
T 3nrv_A 36 FGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
T ss_dssp GTCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 3577765444433333346799999999999999999988765543
No 103
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=82.32 E-value=0.42 Score=31.18 Aligned_cols=22 Identities=18% Similarity=0.129 Sum_probs=19.8
Q ss_pred CChHhhhhhccccHhHHHHHHH
Q psy13113 30 NFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 30 ~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
.+..++|...|||.+||+++++
T Consensus 10 ~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 10 ATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 4789999999999999999774
No 104
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=82.29 E-value=1.9 Score=31.83 Aligned_cols=43 Identities=16% Similarity=0.053 Sum_probs=29.6
Q ss_pred CCCHHH-HHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 12 IHSPVV-KLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 12 ~~~~~~-~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
.+++.+ .++..|..-..+.+..+++..+|++++|+++.+++..
T Consensus 34 ~l~~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~ 77 (146)
T 2fbh_A 34 GLSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLE 77 (146)
T ss_dssp CCTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHH
Confidence 355543 3333442334567999999999999999999876443
No 105
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=82.26 E-value=1.6 Score=39.41 Aligned_cols=47 Identities=13% Similarity=0.112 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHH-hh--cCCChHhhhhhccccHhHHHHHHHHHHHHHH
Q psy13113 12 IHSPVVKLLAVLRF-YA--TGNFQIDSEDYHDISQSTICRLVAKVSEELA 58 (286)
Q Consensus 12 ~~~~~~~l~~~L~~-L~--~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~ 58 (286)
.||+.++-.+.|+| |. .+.++.++|..+|||..||..+..+....|-
T Consensus 360 ~L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR 409 (423)
T 2a6h_F 360 KLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLK 409 (423)
T ss_dssp SSCHHHHHHHHHHHHTTCC-----CHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 47788888888888 44 5679999999999999999999998888776
No 106
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=82.23 E-value=2.6 Score=31.89 Aligned_cols=43 Identities=5% Similarity=-0.138 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHH
Q psy13113 11 VIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKV 53 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v 53 (286)
..+++.+-.++...+-..+.+..+|+..+|++++|+++++++.
T Consensus 42 ~glt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L 84 (162)
T 3k0l_A 42 LEISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDL 84 (162)
T ss_dssp TTCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3566655444333333346799999999999999999988644
No 107
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=82.21 E-value=2.9 Score=34.03 Aligned_cols=48 Identities=8% Similarity=0.054 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 10 GVIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 10 ~~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
...+++.++-.+.| +..|.+..++|...|+|.+||...+.++...|..
T Consensus 171 ~~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 218 (234)
T 1l3l_A 171 AAWLDPKEATYLRW--IAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDV 218 (234)
T ss_dssp CCCCCHHHHHHHHH--HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 44688888866555 5799999999999999999999999988877753
No 108
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=82.13 E-value=2.2 Score=31.60 Aligned_cols=44 Identities=7% Similarity=-0.026 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 11 VIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
..+++.+..++...+-..+.+..+++..++++++|+++.+++..
T Consensus 36 ~~l~~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~ 79 (147)
T 1z91_A 36 LNITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRME 79 (147)
T ss_dssp TCCCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHH
Confidence 34666544333322223456999999999999999999886543
No 109
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=82.11 E-value=2.5 Score=34.51 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 10 GVIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 10 ~~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
...+++.++-.+.| +..|.+..++|...|+|.+||...+.++..-|..
T Consensus 173 ~~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 173 KQMLSPREMLCLVW--ASKGKTASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp GGSCCHHHHHHHHH--HHTTCCHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 45688888776655 5799999999999999999999999988877753
No 110
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=81.87 E-value=3.5 Score=30.24 Aligned_cols=47 Identities=13% Similarity=-0.010 Sum_probs=32.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCChHhhhhhcc--ccHhHHHHHHHHH
Q psy13113 7 DARGVIHSPVVKLLAVLRFYATGNFQIDSEDYHD--ISQSTICRLVAKV 53 (286)
Q Consensus 7 ~~~~~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fg--vs~stv~~~~~~v 53 (286)
.++...++.++...+.-.......+...++..+| +|.+||++++++.
T Consensus 55 ~gr~~~l~~~~~~~i~~~~~~~~~s~~~i~~~lg~~~s~~tV~r~l~~~ 103 (141)
T 1u78_A 55 APRRKALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIKRS 103 (141)
T ss_dssp CCCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHHHHHT
T ss_pred CCCCCcCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCccHHHHHHHHHHC
Confidence 3455668877654433223334478999999998 8999999999763
No 111
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=81.66 E-value=1.9 Score=31.40 Aligned_cols=45 Identities=16% Similarity=0.063 Sum_probs=31.5
Q ss_pred CCCCHHHH-HHHHHHHhh--cCCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 11 VIHSPVVK-LLAVLRFYA--TGNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 11 ~~~~~~~~-l~~~L~~L~--~~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
..+++.+- ++..|+. . .+.+..+|+..++++++|+++.+++....
T Consensus 33 ~~lt~~q~~vL~~l~~-~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 80 (127)
T 2frh_A 33 FSISFEEFAVLTYISE-NKEKEYYLKDIINHLNYKQPQVVKAVKILSQE 80 (127)
T ss_dssp TCCCHHHHHHHHHHHH-TCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHh-ccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 35666543 3333332 3 45689999999999999999988876543
No 112
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=81.59 E-value=1.7 Score=34.43 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHhhcC-------CChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 14 SPVVKLLAVLRFYATG-------NFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 14 ~~~~~l~~~L~~L~~~-------~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
+++++|+.+|..++.. .+..++|...|+++.|++|+++++.+.
T Consensus 141 ~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 190 (216)
T 4ev0_A 141 EARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAEE 190 (216)
T ss_dssp HHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 5688999999877532 378999999999999999999877644
No 113
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=81.53 E-value=3.6 Score=30.93 Aligned_cols=44 Identities=14% Similarity=0.068 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 13 HSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 13 ~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
++..++-++.+..-....++.++|..+|+|++|+++.+++..+.
T Consensus 5 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 48 (151)
T 2cyy_A 5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRES 48 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45444333322222345799999999999999999988876544
No 114
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=81.49 E-value=2.8 Score=30.64 Aligned_cols=27 Identities=11% Similarity=0.181 Sum_probs=22.7
Q ss_pred hcCCChHhhhhhccccHhHHHHHHHHH
Q psy13113 27 ATGNFQIDSEDYHDISQSTICRLVAKV 53 (286)
Q Consensus 27 ~~~~~~~~l~~~Fgvs~stv~~~~~~v 53 (286)
..+.+..+++..+|+|++|+++.+++.
T Consensus 43 ~~~~~~~ela~~l~is~~~vs~~l~~L 69 (142)
T 3bdd_A 43 DAPLHQLALQERLQIDRAAVTRHLKLL 69 (142)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 345799999999999999999977643
No 115
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=81.31 E-value=2.1 Score=34.53 Aligned_cols=45 Identities=9% Similarity=-0.035 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHHhhcC--------CChHhhhhhccccHhHHHHHHHHHH
Q psy13113 10 GVIHSPVVKLLAVLRFYATG--------NFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 10 ~~~~~~~~~l~~~L~~L~~~--------~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
-...+++++|+.+|..++.. .+..++|...|+++.|++|+++++.
T Consensus 159 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~l~ 211 (232)
T 1zyb_A 159 EPTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNELQ 211 (232)
T ss_dssp CCCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChhHHHHHHHHHH
Confidence 34578999999999887532 4889999999999999999988664
No 116
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=81.21 E-value=2.2 Score=36.65 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=29.6
Q ss_pred HHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 19 LLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 19 l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
.-++..|...+.+..++|..||||++||+|.+....+
T Consensus 11 ~~ia~l~~~~~~~~~ela~~l~vS~~tIrRdL~~l~~ 47 (315)
T 2w48_A 11 VKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGRE 47 (315)
T ss_dssp HHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3345556667789999999999999999998876543
No 117
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=81.17 E-value=0.49 Score=30.05 Aligned_cols=24 Identities=13% Similarity=-0.011 Sum_probs=20.7
Q ss_pred hcCCChHhhhhhccccHhHHHHHH
Q psy13113 27 ATGNFQIDSEDYHDISQSTICRLV 50 (286)
Q Consensus 27 ~~~~~~~~l~~~Fgvs~stv~~~~ 50 (286)
..+.++.+||...|||++||++|.
T Consensus 8 ~~~~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 8 DHFGTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHSSHHHHHHHHTCCHHHHHHCC
T ss_pred HHcCCHHHHHHHhCCCHHHHHHHH
Confidence 344589999999999999999975
No 118
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=81.01 E-value=3.1 Score=31.29 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=28.8
Q ss_pred CCCHHHH-HHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 12 IHSPVVK-LLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 12 ~~~~~~~-l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
.++..+. ++..|.. ..+.+..+++..+|++++|+++.+++..
T Consensus 46 ~lt~~~~~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le 88 (162)
T 2fa5_A 46 GMAIPEWRVITILAL-YPGSSASEVSDRTAMDKVAVSRAVARLL 88 (162)
T ss_dssp CCCHHHHHHHHHHHH-STTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3555443 3333332 4567899999999999999999886544
No 119
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=81.00 E-value=1.4 Score=30.31 Aligned_cols=30 Identities=13% Similarity=-0.036 Sum_probs=23.0
Q ss_pred HHHHhhc--CCChHhhhhhccccHhHHHHHHH
Q psy13113 22 VLRFYAT--GNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 22 ~L~~L~~--~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
.|.+|+. ..+..+|+..|+||..||.+.+.
T Consensus 7 Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~ 38 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSARLQTPQPLIDAMLE 38 (87)
T ss_dssp HHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHH
Confidence 3444543 35888999999999999998665
No 120
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=80.68 E-value=2.1 Score=30.29 Aligned_cols=29 Identities=7% Similarity=0.071 Sum_probs=24.4
Q ss_pred hcCCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 27 ATGNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 27 ~~~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
..+.+..+++..+|+|++|+++.++....
T Consensus 32 ~~~~~~~ela~~l~is~~tv~~~l~~L~~ 60 (114)
T 2oqg_A 32 RADQSASSLATRLPVSRQAIAKHLNALQA 60 (114)
T ss_dssp HSCBCHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44579999999999999999998876644
No 121
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=80.67 E-value=3.2 Score=27.66 Aligned_cols=34 Identities=18% Similarity=0.066 Sum_probs=29.2
Q ss_pred HHHHHHHHhhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 18 KLLAVLRFYATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 18 ~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
.+.-.|..++...++.++|...|||++|++++-+
T Consensus 16 ~~g~~l~~~R~~~sq~~lA~~~gis~~~is~~E~ 49 (86)
T 2ofy_A 16 RLGELLRSARGDMSMVTVAFDAGISVETLRKIET 49 (86)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCHHHHHHHhCCCHHHHHHHHc
Confidence 3666788888777999999999999999998765
No 122
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=80.62 E-value=3.5 Score=30.32 Aligned_cols=44 Identities=9% Similarity=0.090 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 10 GVIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 10 ~~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
...+++.+...+... ..++.+..++|..+|++++|+++.+++..
T Consensus 33 ~~~lt~~~~~iL~~l-~~~~~t~~eLa~~l~~s~~tvs~~l~~L~ 76 (146)
T 3tgn_A 33 EVALTNTQEHILMLL-SEESLTNSELARRLNVSQAAVTKAIKSLV 76 (146)
T ss_dssp SSCCCHHHHHHHHHH-TTCCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHH-HhCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345676554433332 23448999999999999999999887554
No 123
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=80.55 E-value=3.5 Score=30.78 Aligned_cols=27 Identities=7% Similarity=0.012 Sum_probs=23.1
Q ss_pred cCCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 28 TGNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 28 ~~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
...++.++|..+|+|++|+++.+++..
T Consensus 18 ~~~s~~ela~~lg~s~~tv~~~l~~L~ 44 (144)
T 2cfx_A 18 SRLSMRELGRKIKLSPPSVTERVRQLE 44 (144)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 346999999999999999999887554
No 124
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=80.40 E-value=2.4 Score=31.99 Aligned_cols=43 Identities=14% Similarity=-0.065 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 12 IHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
.++..+..++...+-..+.+..+++..+|++++|+++.+++..
T Consensus 49 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le 91 (162)
T 3cjn_A 49 GLSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQ 91 (162)
T ss_dssp TCCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHH
Confidence 3555443333222223456999999999999999999886543
No 125
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=80.39 E-value=2.5 Score=31.52 Aligned_cols=44 Identities=9% Similarity=0.015 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 11 VIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
..+++.+-.++...+-..+.+..+++..++++++|+++.+++..
T Consensus 37 ~~lt~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~ 80 (149)
T 4hbl_A 37 FGITYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLE 80 (149)
T ss_dssp TTCCHHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34666553333333334566999999999999999999886543
No 126
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=80.37 E-value=1.8 Score=34.51 Aligned_cols=44 Identities=11% Similarity=0.018 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHhhc--------------CCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 13 HSPVVKLLAVLRFYAT--------------GNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 13 ~~~~~~l~~~L~~L~~--------------~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
.+++++|+-+|..+.. ..+..++|...|+|+.|++++++++...
T Consensus 133 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~~~ 190 (222)
T 1ft9_A 133 HDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIKE 190 (222)
T ss_dssp HHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 4678899999988862 2478899999999999999999987644
No 127
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=80.37 E-value=2.9 Score=31.31 Aligned_cols=28 Identities=7% Similarity=0.183 Sum_probs=23.3
Q ss_pred cCCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 28 TGNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 28 ~~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
.+.+..+++..++++++|+++.+++...
T Consensus 57 ~~~t~~ela~~l~is~~tvs~~l~~Le~ 84 (154)
T 2eth_A 57 GPKKMKEIAEFLSTTKSNVTNVVDSLEK 84 (154)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4679999999999999999998765443
No 128
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=80.19 E-value=3.1 Score=27.61 Aligned_cols=40 Identities=13% Similarity=0.032 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHhhcCC--ChHhhhhhccccHhHHHHHHHH
Q psy13113 13 HSPVVKLLAVLRFYATGN--FQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 13 ~~~~~~l~~~L~~L~~~~--~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
+...+++.-++..|..+. +...+|..+|+++++|.+.+..
T Consensus 11 ~~~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~ 52 (75)
T 1sfu_A 11 AEIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYK 52 (75)
T ss_dssp HHHHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHH
Confidence 456788888899999876 8889999999999998876653
No 129
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=80.15 E-value=2.8 Score=34.29 Aligned_cols=48 Identities=15% Similarity=0.002 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHH
Q psy13113 9 RGVIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELA 58 (286)
Q Consensus 9 ~~~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~ 58 (286)
....+++.++-.+.| ++.|.+.+++|...|+|.+||...+.++..-|.
T Consensus 172 ~~~~Lt~re~~vl~~--~~~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (237)
T 3szt_A 172 SNVRLTARETEMLKW--TAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLN 219 (237)
T ss_dssp GGCCCCHHHHHHHHH--HHTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHH--HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 356788877765555 689999999999999999999999998876664
No 130
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=80.14 E-value=1.1 Score=29.44 Aligned_cols=21 Identities=0% Similarity=-0.084 Sum_probs=19.4
Q ss_pred ChHhhhhhccccHhHHHHHHH
Q psy13113 31 FQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 31 ~~~~l~~~Fgvs~stv~~~~~ 51 (286)
+...||..+|||++||++|++
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~ 32 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQ 32 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHh
Confidence 488999999999999999986
No 131
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=80.12 E-value=2.7 Score=30.75 Aligned_cols=44 Identities=16% Similarity=0.033 Sum_probs=29.8
Q ss_pred CCCHHHH-HHHHHHHhh-cCCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 12 IHSPVVK-LLAVLRFYA-TGNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 12 ~~~~~~~-l~~~L~~L~-~~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
.+++.+- ++..|..-. .+.+..+++..+|++++|+++.+++...
T Consensus 28 ~lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 73 (139)
T 3eco_A 28 DITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLER 73 (139)
T ss_dssp TCCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 4555433 333333322 2679999999999999999998876543
No 132
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=80.09 E-value=3.6 Score=30.90 Aligned_cols=27 Identities=11% Similarity=0.030 Sum_probs=22.7
Q ss_pred cCCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 28 TGNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 28 ~~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
...++.++|..+|+|++|+++.+++..
T Consensus 20 ~~~s~~ela~~lg~s~~tv~~~l~~L~ 46 (150)
T 2w25_A 20 GRATLSELATRAGLSVSAVQSRVRRLE 46 (150)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 346999999999999999998876543
No 133
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=80.05 E-value=3.1 Score=30.77 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=23.5
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
..++.++|..+|+|++|+++.+++...
T Consensus 18 ~~~~~ela~~lg~s~~tv~~~l~~L~~ 44 (141)
T 1i1g_A 18 RTPFTEIAKKLGISETAVRKRVKALEE 44 (141)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 469999999999999999998876654
No 134
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=79.89 E-value=2.7 Score=31.28 Aligned_cols=42 Identities=10% Similarity=-0.022 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHH
Q psy13113 12 IHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKV 53 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v 53 (286)
.+++.+..++...+-..+.+..+++..+|++++|+++.+++.
T Consensus 37 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~L 78 (152)
T 3bj6_A 37 GVTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEV 78 (152)
T ss_dssp TCCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 456554333333333346799999999999999999987643
No 135
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=79.85 E-value=2.2 Score=33.97 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHhhcC-----------CChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 14 SPVVKLLAVLRFYATG-----------NFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 14 ~~~~~l~~~L~~L~~~-----------~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
+++++|+.+|..+... .+..++|...|+|+.|++|+++++.+
T Consensus 152 ~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 204 (227)
T 3dkw_A 152 NATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGD 204 (227)
T ss_dssp HHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5678999888776642 37789999999999999999886654
No 136
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=79.57 E-value=2.7 Score=31.32 Aligned_cols=41 Identities=15% Similarity=-0.012 Sum_probs=28.2
Q ss_pred CCCHHHH-HHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHH
Q psy13113 12 IHSPVVK-LLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKV 53 (286)
Q Consensus 12 ~~~~~~~-l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v 53 (286)
.+++.+. ++..|+ -..+.+..+++...+++++|+++++++.
T Consensus 38 ~lt~~~~~iL~~l~-~~~~~t~~eLa~~l~~~~~tvs~~l~~L 79 (154)
T 2qww_A 38 GLTIQQLAMINVIY-STPGISVADLTKRLIITGSSAAANVDGL 79 (154)
T ss_dssp TCCHHHHHHHHHHH-HSTTEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3555443 333333 2345699999999999999999987644
No 137
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=79.53 E-value=2.2 Score=31.47 Aligned_cols=42 Identities=14% Similarity=0.100 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHH
Q psy13113 12 IHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKV 53 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v 53 (286)
.+++.+..++...+-..+.+..+++..++++++|+++.+++.
T Consensus 26 ~lt~~~~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~L 67 (144)
T 1lj9_A 26 SLTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRL 67 (144)
T ss_dssp TCTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHH
Confidence 355544333322222335699999999999999999877643
No 138
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=79.48 E-value=2.9 Score=29.51 Aligned_cols=27 Identities=7% Similarity=0.060 Sum_probs=22.7
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
..+..++|..+|+|++||++.+.....
T Consensus 33 ~~s~~eLa~~lgvs~~tV~~~L~~L~~ 59 (110)
T 1q1h_A 33 EMTDEEIANQLNIKVNDVRKKLNLLEE 59 (110)
T ss_dssp CBCHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 468899999999999999998875543
No 139
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=79.42 E-value=3.2 Score=33.81 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHhhc--------------CCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 12 IHSPVVKLLAVLRFYAT--------------GNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L~~--------------~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
..+++++|+.+|..++. ..+..++|...|+|+.|++|+++++...
T Consensus 146 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~ 204 (250)
T 3e6c_C 146 TYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASLKRE 204 (250)
T ss_dssp TSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 46889999999988752 3488999999999999999999877654
No 140
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=79.40 E-value=4.1 Score=30.66 Aligned_cols=29 Identities=17% Similarity=0.129 Sum_probs=24.3
Q ss_pred cCCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 28 TGNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 28 ~~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
...++.++|..+|+|++|+++.+++..+.
T Consensus 21 ~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 49 (152)
T 2cg4_A 21 ARTAYAELAKQFGVSPETIHVRVEKMKQA 49 (152)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 34699999999999999999988766543
No 141
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=79.39 E-value=2.7 Score=34.61 Aligned_cols=43 Identities=12% Similarity=0.055 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHhhcC-------------CChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 13 HSPVVKLLAVLRFYATG-------------NFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 13 ~~~~~~l~~~L~~L~~~-------------~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
.+++++|+.+|..|+.. .+..++|...|+|+.|++|+++++.+
T Consensus 188 ~~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~lG~sr~tvsR~l~~L~~ 243 (260)
T 3kcc_A 188 LLVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLED 243 (260)
T ss_dssp CCHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 57889999999888642 36789999999999999999886543
No 142
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=79.32 E-value=2.7 Score=29.64 Aligned_cols=36 Identities=11% Similarity=0.030 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhh--cCCChHhhhhhccccHhHHHHHHH
Q psy13113 16 VVKLLAVLRFYA--TGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 16 ~~~l~~~L~~L~--~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
.+++.-.|..++ .|.++.+||...|||++|+++|=+
T Consensus 34 ~~~lG~~ir~~R~~~glTQ~eLA~~~gvs~~~is~~E~ 71 (101)
T 4ghj_A 34 AEEIGDRLKQARLNRDLTQSEVAEIAGIARKTVLNAEK 71 (101)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHC
Confidence 456666666665 688999999999999999998753
No 143
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=79.24 E-value=4.2 Score=30.53 Aligned_cols=44 Identities=14% Similarity=0.034 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 13 HSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 13 ~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
++..++-++.+..-....++.++|..+|+|++|+++.+++..+.
T Consensus 7 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 50 (151)
T 2dbb_A 7 LDRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKL 50 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 44444333322222344699999999999999999988766543
No 144
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=79.13 E-value=2.5 Score=31.54 Aligned_cols=42 Identities=5% Similarity=-0.017 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHH
Q psy13113 12 IHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKV 53 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v 53 (286)
.+++.+..++...+-..+.+..+++..+|++++|+++.+++.
T Consensus 34 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~L 75 (155)
T 1s3j_A 34 GVTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRL 75 (155)
T ss_dssp TCCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 456554433333233345699999999999999999987644
No 145
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=79.08 E-value=1.6 Score=28.43 Aligned_cols=28 Identities=7% Similarity=-0.090 Sum_probs=24.1
Q ss_pred HHhhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 24 RFYATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 24 ~~L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
.+-..|.++.++|...|||++|+++|-+
T Consensus 19 ~R~~~gltq~elA~~~gvs~~tis~~E~ 46 (73)
T 3fmy_A 19 VRKKLSLTQKEASEIFGGGVNAFSRYEK 46 (73)
T ss_dssp HHHHTTCCHHHHHHHHCSCTTHHHHHHT
T ss_pred HHHHcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 3456789999999999999999999764
No 146
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=79.05 E-value=1.4 Score=27.48 Aligned_cols=26 Identities=15% Similarity=0.047 Sum_probs=22.9
Q ss_pred hhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 26 YATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 26 L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
-..|.++.++|...|+|++|++++.+
T Consensus 11 ~~~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 11 EKKKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 44688999999999999999998875
No 147
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=79.03 E-value=2.8 Score=31.16 Aligned_cols=45 Identities=9% Similarity=0.127 Sum_probs=25.7
Q ss_pred CCCHHHH-HHHHHHHhh-cCCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 12 IHSPVVK-LLAVLRFYA-TGNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 12 ~~~~~~~-l~~~L~~L~-~~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
.+++.+- ++..|..-. .+.+..+++..++++++|+++++++....
T Consensus 38 glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~ 84 (148)
T 3jw4_A 38 GLNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKK 84 (148)
T ss_dssp TCCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 4565443 333443322 56799999999999999999988876543
No 148
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=78.93 E-value=2.5 Score=34.43 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHhhc-CCCh--HhhhhhccccHhHHHHHHHHHHHH
Q psy13113 14 SPVVKLLAVLRFYAT-GNFQ--IDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 14 ~~~~~l~~~L~~L~~-~~~~--~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
+..++++-+|+.|.. +.+. .++|..+|+|++|+++.+++....
T Consensus 6 ~~~e~~L~~L~~l~~~~~~~~~~~La~~l~vs~~tvs~~l~~Le~~ 51 (230)
T 1fx7_A 6 DTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERD 51 (230)
T ss_dssp SHHHHHHHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCCCCcHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346788888888864 6666 999999999999999999887654
No 149
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=78.92 E-value=2.8 Score=27.12 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=27.2
Q ss_pred HHHHHHHHHhh--cCCChHhhhhhccccHhHHHHHHH
Q psy13113 17 VKLLAVLRFYA--TGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 17 ~~l~~~L~~L~--~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
..+.-.|..++ .|.++.++|...|||++|++++.+
T Consensus 9 ~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 9 RKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 34444455444 688999999999999999999875
No 150
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=78.83 E-value=3.3 Score=33.00 Aligned_cols=43 Identities=14% Similarity=0.047 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHhhc--------------CCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 13 HSPVVKLLAVLRFYAT--------------GNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 13 ~~~~~~l~~~L~~L~~--------------~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
.+++++|+.+|..|+. ..+..++|...|+|+.|++|+++++.+
T Consensus 147 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 203 (227)
T 3d0s_A 147 TDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAH 203 (227)
T ss_dssp SCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 5788999999988741 358889999999999999999987654
No 151
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=78.54 E-value=3.3 Score=33.90 Aligned_cols=42 Identities=17% Similarity=0.060 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 10 GVIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 10 ~~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
+..+++.++.......+..|.+...+|..+|+|+++|++++.
T Consensus 115 R~~L~~~E~a~~~~~l~~~g~t~~~iA~~lG~s~~~V~~~l~ 156 (230)
T 1vz0_A 115 REDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALR 156 (230)
T ss_dssp STTCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 467888777777777778899999999999999999998875
No 152
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=78.53 E-value=3.4 Score=31.52 Aligned_cols=42 Identities=10% Similarity=-0.115 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHH
Q psy13113 12 IHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKV 53 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v 53 (286)
.++..+-.++...+-..+.+..+|+..+|++++|+++.+++.
T Consensus 42 ~lt~~~~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~L 83 (168)
T 2nyx_A 42 NITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRL 83 (168)
T ss_dssp SCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 466654433333233446799999999999999999987644
No 153
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=78.50 E-value=1.9 Score=28.46 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=21.5
Q ss_pred hcCCChHhhhhhccccHhHHHHHHH
Q psy13113 27 ATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 27 ~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
..| ++.++|...|||++|+++|.+
T Consensus 10 ~~g-sq~~lA~~lgvs~~~is~~e~ 33 (79)
T 3bd1_A 10 KLG-SVSALAASLGVRQSAISNWRA 33 (79)
T ss_dssp HHS-SHHHHHHHHTCCHHHHHHHHH
T ss_pred HhC-CHHHHHHHHCCCHHHHHHHHH
Confidence 346 999999999999999999876
No 154
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=78.47 E-value=1.9 Score=28.44 Aligned_cols=32 Identities=9% Similarity=0.046 Sum_probs=25.1
Q ss_pred HHHHHHHHhhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 18 KLLAVLRFYATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 18 ~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
++...|. ..|.++.+||...|||++|++++..
T Consensus 13 ri~~~l~--~~glT~~~LA~~~Gvs~stls~~~~ 44 (74)
T 1neq_A 13 DVIAGLK--KRKLSLSALSRQFGYAPTTLANALE 44 (74)
T ss_dssp HHHHHHH--TTSCCHHHHHHHHSSCHHHHHHTTT
T ss_pred HHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3444443 6789999999999999999997643
No 155
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=78.18 E-value=5.1 Score=26.58 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=22.7
Q ss_pred CCChHhhhhhc-----cccHhHHHHHHHHHHH
Q psy13113 29 GNFQIDSEDYH-----DISQSTICRLVAKVSE 55 (286)
Q Consensus 29 ~~~~~~l~~~F-----gvs~stv~~~~~~v~~ 55 (286)
..+..+++..+ ++|.+||++.++...+
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 46888999999 9999999998876554
No 156
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=78.10 E-value=2.4 Score=30.85 Aligned_cols=44 Identities=7% Similarity=-0.136 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 12 IHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
.+++.+...+...+-..+.+..+++..+|++++|+++.+++...
T Consensus 30 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~ 73 (139)
T 3bja_A 30 DISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKR 73 (139)
T ss_dssp TCCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 46655433333222234569999999999999999998875443
No 157
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=78.02 E-value=2.6 Score=31.42 Aligned_cols=44 Identities=18% Similarity=-0.000 Sum_probs=29.2
Q ss_pred CCCHHHHHHH-HHHHhhcCCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 12 IHSPVVKLLA-VLRFYATGNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 12 ~~~~~~~l~~-~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
.+++.+-.++ .|..-..+.+..+++..++++++|+++.+++...
T Consensus 36 glt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 80 (150)
T 3fm5_A 36 GLRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEE 80 (150)
T ss_dssp TCCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 4555443332 2322222459999999999999999998876543
No 158
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=78.01 E-value=2.1 Score=29.82 Aligned_cols=33 Identities=15% Similarity=0.049 Sum_probs=25.4
Q ss_pred HHHhhc-CCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 23 LRFYAT-GNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 23 L~~L~~-~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
|..|.. ..+..+++..+|+|++|+++.++....
T Consensus 29 l~~L~~~~~~~~ela~~l~is~~tvs~~L~~L~~ 62 (102)
T 3pqk_A 29 VCTLVEGEFSVGELEQQIGIGQPTLSQQLGVLRE 62 (102)
T ss_dssp HHHHHTCCBCHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 334444 458999999999999999998876544
No 159
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=78.01 E-value=4.4 Score=30.85 Aligned_cols=44 Identities=7% Similarity=-0.031 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 13 HSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 13 ~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
++..++-++.+..-....++.++|..+|+|++|+++.+++..+.
T Consensus 8 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 51 (162)
T 2p5v_A 8 LDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDA 51 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 55544433332222334699999999999999999988766543
No 160
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=77.72 E-value=2.4 Score=31.37 Aligned_cols=29 Identities=7% Similarity=0.094 Sum_probs=23.9
Q ss_pred hcCCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 27 ATGNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 27 ~~~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
..+.+..+++..+|++++|+++.+++...
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~ 76 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELER 76 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 34569999999999999999998875443
No 161
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=77.63 E-value=3.1 Score=31.49 Aligned_cols=43 Identities=14% Similarity=-0.124 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 13 HSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 13 ~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
+++.+-.++...+-..+.+..+|+..+|++++|+++.+++...
T Consensus 51 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~ 93 (161)
T 3e6m_A 51 LPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVD 93 (161)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4554333332222334679999999999999999998875543
No 162
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=77.61 E-value=2.5 Score=27.85 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=22.4
Q ss_pred hcCCChHhhhhhccccHhHHHHHHH
Q psy13113 27 ATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 27 ~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
..|.++.++|...|||++|+++|.+
T Consensus 23 ~~gltq~~lA~~~gvs~~~is~~e~ 47 (80)
T 3kz3_A 23 ELGLSYESVADKMGMGQSAVAALFN 47 (80)
T ss_dssp HHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 3688999999999999999999865
No 163
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=77.60 E-value=5.4 Score=33.23 Aligned_cols=48 Identities=19% Similarity=0.069 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 10 GVIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 10 ~~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
...++..++-.+.|. +.|.+..++|...|+|..||...+.++..-|..
T Consensus 195 ~~~Lt~re~~vl~~~--~~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~~ 242 (265)
T 3qp6_A 195 NMPLSQREYDIFHWM--SRGKTNWEIATILNISERTVKFHVANVIRKLNA 242 (265)
T ss_dssp CCCCCHHHHHHHHHH--HTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 356888777666654 799999999999999999999999988777653
No 164
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=77.50 E-value=1.3 Score=31.45 Aligned_cols=29 Identities=3% Similarity=-0.096 Sum_probs=24.5
Q ss_pred cCCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 28 TGNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 28 ~~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
.+.+..+++..+|+|++|+++.++...+.
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~~ 65 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKSG 65 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34588999999999999999999877654
No 165
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=77.50 E-value=3.3 Score=30.82 Aligned_cols=42 Identities=10% Similarity=-0.031 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 12 IHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
.+++.+-.++... -..+.+..++|..+|++++|+++.+++..
T Consensus 35 ~lt~~q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le 76 (151)
T 3kp7_A 35 GISAEQSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLL 76 (151)
T ss_dssp TCCHHHHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3555443333333 45567999999999999999999886543
No 166
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=77.47 E-value=3.7 Score=32.93 Aligned_cols=45 Identities=4% Similarity=0.021 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHhhc----------CCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 11 VIHSPVVKLLAVLRFYAT----------GNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~L~~----------~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
...+++++|+.+|..++. ..+..++|...|+++.|++|+++++.+
T Consensus 150 ~~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~ 204 (237)
T 3fx3_A 150 KAQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKA 204 (237)
T ss_dssp CCCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHHHHHHHHGG
T ss_pred hcCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 456889999999999864 235789999999999999999987653
No 167
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=77.38 E-value=2.2 Score=26.93 Aligned_cols=26 Identities=19% Similarity=0.096 Sum_probs=22.8
Q ss_pred hhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 26 YATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 26 L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
...|.++.++|...|+|++|++++.+
T Consensus 11 ~~~glsq~~lA~~~gis~~~i~~~e~ 36 (69)
T 1r69_A 11 IQLGLNQAELAQKVGTTQQSIEQLEN 36 (69)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45688999999999999999998864
No 168
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=77.37 E-value=1.6 Score=30.19 Aligned_cols=34 Identities=15% Similarity=0.031 Sum_probs=26.4
Q ss_pred HHHhhcC-CChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 23 LRFYATG-NFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 23 L~~L~~~-~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
|..|..+ .+..+++..+|+|++|+++.++...+.
T Consensus 29 l~~L~~~~~~~~ela~~l~is~~tvs~~L~~L~~~ 63 (98)
T 3jth_A 29 LCMLHNQELSVGELCAKLQLSQSALSQHLAWLRRD 63 (98)
T ss_dssp HHHTTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3445544 489999999999999999988766543
No 169
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=77.27 E-value=3.9 Score=31.19 Aligned_cols=45 Identities=13% Similarity=0.114 Sum_probs=30.4
Q ss_pred CCCCCHHHHH-HHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 10 GVIHSPVVKL-LAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 10 ~~~~~~~~~l-~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
...++..+-. +..|.....+.+..+|+..++++++|+++.+++..
T Consensus 48 ~~glt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le 93 (166)
T 3deu_A 48 PLELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLE 93 (166)
T ss_dssp TTTCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHH
Confidence 3456665533 33332223457999999999999999999876543
No 170
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=77.23 E-value=2.2 Score=27.10 Aligned_cols=26 Identities=19% Similarity=0.068 Sum_probs=22.8
Q ss_pred hhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 26 YATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 26 L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
...|.++.++|...|||++|++++.+
T Consensus 13 ~~~glsq~~lA~~~gis~~~i~~~e~ 38 (71)
T 1zug_A 13 IALKMTQTELATKAGVKQQSIQLIEA 38 (71)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 44678999999999999999998765
No 171
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=77.11 E-value=2.4 Score=31.16 Aligned_cols=44 Identities=7% Similarity=-0.021 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 12 IHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
.+++.+..++...+-..+.+..+++..+|++++|+++.+++...
T Consensus 34 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~ 77 (142)
T 2bv6_A 34 NLTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQ 77 (142)
T ss_dssp TCCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 35554433322222233468999999999999999998865443
No 172
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=76.71 E-value=1.6 Score=28.15 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=23.1
Q ss_pred hhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 26 YATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 26 L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
-..|.++.++|...|||++|++++.+
T Consensus 18 ~~~glsq~~lA~~~gis~~~is~~e~ 43 (73)
T 3omt_A 18 AEKGKTNLWLTETLDKNKTTVSKWCT 43 (73)
T ss_dssp HHHTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 35788999999999999999999875
No 173
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=76.61 E-value=2.2 Score=28.48 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=22.7
Q ss_pred hhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 26 YATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 26 L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
...|.++.++|...|+|++|++++.+
T Consensus 28 ~~~glsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 28 RNSGLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34578999999999999999999875
No 174
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=76.58 E-value=3.5 Score=30.82 Aligned_cols=44 Identities=9% Similarity=-0.065 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 12 IHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
.++..+..++...+-..+.+..+++..+|++++|+++.+++...
T Consensus 40 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~ 83 (155)
T 3cdh_A 40 GLRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDA 83 (155)
T ss_dssp TCCHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35554433222222223469999999999999999998875543
No 175
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=76.23 E-value=2.3 Score=30.61 Aligned_cols=30 Identities=3% Similarity=0.027 Sum_probs=25.0
Q ss_pred hcCCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 27 ATGNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 27 ~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
....+..+++..+|+|++|+++.++...++
T Consensus 29 ~~~~~~~eLa~~l~is~~tvs~hL~~L~~~ 58 (118)
T 3f6o_A 29 RGPATVSELAKPFDMALPSFMKHIHFLEDS 58 (118)
T ss_dssp TCCEEHHHHHTTCCSCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHhCcCHHHHHHHHHHHHHC
Confidence 344589999999999999999988876654
No 176
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=76.21 E-value=3.8 Score=30.15 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=22.8
Q ss_pred ChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 31 FQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 31 ~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
+..+++..+|++++|+++.+++....
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le~~ 77 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLEAK 77 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 99999999999999999988766543
No 177
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=76.19 E-value=2.6 Score=27.83 Aligned_cols=28 Identities=7% Similarity=0.020 Sum_probs=24.4
Q ss_pred HHhhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 24 RFYATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 24 ~~L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
++...|.++.++|...|||+++++++.+
T Consensus 18 ~R~~~gltq~elA~~~gis~~~is~~E~ 45 (78)
T 3qq6_A 18 YRKEKGYSLSELAEKAGVAKSYLSSIER 45 (78)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4556789999999999999999998765
No 178
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=76.08 E-value=3.6 Score=32.86 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=34.6
Q ss_pred HH-HHHHHHHHHhhc-------------CCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 15 PV-VKLLAVLRFYAT-------------GNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 15 ~~-~~l~~~L~~L~~-------------~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
+. ++|+-+|..+.. ..+..++|...|+|+.|++|+++++.+.
T Consensus 147 ~~~~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 202 (231)
T 3e97_A 147 NTEAALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMARTSSSRETVSRVLKRLEAH 202 (231)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 34 889988888874 3488999999999999999999877543
No 179
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=76.02 E-value=3.9 Score=30.61 Aligned_cols=33 Identities=9% Similarity=0.068 Sum_probs=25.8
Q ss_pred HHhhc--CCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 24 RFYAT--GNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 24 ~~L~~--~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
..|.. ..++.++|..+|+|++|+++.+++..+.
T Consensus 10 ~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~ 44 (150)
T 2pn6_A 10 KILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKD 44 (150)
T ss_dssp HHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34443 3699999999999999999988766543
No 180
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=75.88 E-value=4.3 Score=29.48 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=26.7
Q ss_pred HHHhhc-CCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 23 LRFYAT-GNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 23 L~~L~~-~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
|..|.. ..+..+++..+|+|++|+++.++...+
T Consensus 52 L~~L~~~~~s~~ela~~lgis~stvs~~L~~Le~ 85 (122)
T 1r1t_A 52 LSLLARSELCVGDLAQAIGVSESAVSHQLRSLRN 85 (122)
T ss_dssp HHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 444555 468999999999999999999887665
No 181
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=75.75 E-value=1.3 Score=28.72 Aligned_cols=22 Identities=14% Similarity=0.021 Sum_probs=20.0
Q ss_pred CChHhhhhhccccHhHHHHHHH
Q psy13113 30 NFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 30 ~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
.++..+|..+||++++|+++++
T Consensus 14 ~s~t~aA~~L~vtQ~AVS~~ir 35 (66)
T 2ovg_A 14 FGQTKTAKDLGVYPSSINQAIH 35 (66)
T ss_dssp HCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHH
Confidence 3999999999999999999874
No 182
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=75.69 E-value=3 Score=27.82 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=26.5
Q ss_pred HHHHHHHHh--hcCCChHhhhhhccccHhHHHHHHH
Q psy13113 18 KLLAVLRFY--ATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 18 ~l~~~L~~L--~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
.+.-.|..+ ..|.++.++|...|||++|++++.+
T Consensus 12 ~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 12 QLANAMKLVRQQNGWTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 344444444 4678999999999999999999876
No 183
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=75.67 E-value=5.4 Score=26.38 Aligned_cols=43 Identities=12% Similarity=-0.008 Sum_probs=29.8
Q ss_pred CCCCHHH-HHHHHHHHhhcCCChHhhhhhcc----ccHhHHHHHHHHHH
Q psy13113 11 VIHSPVV-KLLAVLRFYATGNFQIDSEDYHD----ISQSTICRLVAKVS 54 (286)
Q Consensus 11 ~~~~~~~-~l~~~L~~L~~~~~~~~l~~~Fg----vs~stv~~~~~~v~ 54 (286)
..++..+ .++.+|+. ..+.+..+++..++ ++.+||++.+++..
T Consensus 5 ~~lt~~e~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~ 52 (82)
T 1p6r_A 5 PQISDAELEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLI 52 (82)
T ss_dssp CCCCHHHHHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence 3466644 45555544 44579999999986 78999998886544
No 184
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=75.67 E-value=3.8 Score=28.86 Aligned_cols=33 Identities=9% Similarity=0.157 Sum_probs=25.1
Q ss_pred HHHhhc-CCChHhhhhhc-cccHhHHHHHHHHHHH
Q psy13113 23 LRFYAT-GNFQIDSEDYH-DISQSTICRLVAKVSE 55 (286)
Q Consensus 23 L~~L~~-~~~~~~l~~~F-gvs~stv~~~~~~v~~ 55 (286)
|..|.. ..++.+++... |+|++|+++.+++..+
T Consensus 20 L~~L~~~~~~~~eLa~~l~~is~~tls~~L~~Le~ 54 (107)
T 2hzt_A 20 LXHLTHGKKRTSELKRLMPNITQKMLTQQLRELEA 54 (107)
T ss_dssp HHHHTTCCBCHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 334444 46999999999 9999999998865443
No 185
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=75.43 E-value=2.8 Score=28.19 Aligned_cols=35 Identities=29% Similarity=0.220 Sum_probs=28.0
Q ss_pred HHHHHHHHHhh--cCCChHhhhhhccccHhHHHHHHH
Q psy13113 17 VKLLAVLRFYA--TGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 17 ~~l~~~L~~L~--~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
..+.-.|..++ .|.++.++|...|+|++|+++|-+
T Consensus 13 ~~~g~~l~~~R~~~gltq~elA~~~gis~~~is~~E~ 49 (86)
T 3eus_A 13 VYLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVET 49 (86)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 34555555555 788999999999999999998864
No 186
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=75.35 E-value=2.3 Score=26.66 Aligned_cols=26 Identities=12% Similarity=-0.072 Sum_probs=22.6
Q ss_pred hhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 26 YATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 26 L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
-..|.++.++|...|+|++|++++.+
T Consensus 15 ~~~g~s~~~lA~~~gis~~~i~~~e~ 40 (68)
T 2r1j_L 15 KKLKIRQAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHc
Confidence 34678999999999999999998865
No 187
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=75.31 E-value=2.8 Score=29.15 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhc-CCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 16 VVKLLAVLRFYAT-GNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 16 ~~~l~~~L~~L~~-~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
..++.+....+.. +.+..+++..+|+|++|+++.++...++
T Consensus 27 ~~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~~~ 68 (99)
T 2zkz_A 27 PMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGK 68 (99)
T ss_dssp HHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3444444334444 4688999999999999999999877766
No 188
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=75.21 E-value=4.5 Score=27.43 Aligned_cols=34 Identities=18% Similarity=0.023 Sum_probs=26.1
Q ss_pred HHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHH
Q psy13113 19 LLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKV 53 (286)
Q Consensus 19 l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v 53 (286)
-...|..|+. ..+..+|...||+.||++|+-+..
T Consensus 15 es~iL~~La~-~gQ~~vAe~~GvdeStISR~k~~~ 48 (83)
T 1zs4_A 15 ESALLNKIAM-LGTEKTAEAVGVDKSQISRWKRDW 48 (83)
T ss_dssp HHHHHHHHHH-HCHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHH-HhhHHHHHHhCCCHHHHhhhhhhH
Confidence 3445555655 678899999999999999976555
No 189
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=75.16 E-value=2.7 Score=31.68 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=23.3
Q ss_pred hcCCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 27 ATGNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 27 ~~~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
..+.+..++|..++++++|+++++++..
T Consensus 62 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le 89 (159)
T 3s2w_A 62 EDGINQESLSDYLKIDKGTTARAIQKLV 89 (159)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3456899999999999999999887544
No 190
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=74.93 E-value=4.1 Score=27.83 Aligned_cols=29 Identities=3% Similarity=0.000 Sum_probs=24.6
Q ss_pred cCCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 28 TGNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 28 ~~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
.+.+..+++..+|+|++|+++.++.....
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~~ 57 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLERN 57 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45699999999999999999988866554
No 191
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=74.70 E-value=3.1 Score=33.59 Aligned_cols=44 Identities=14% Similarity=0.186 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHhh--------------c-CCChHhhhhhccccHh-HHHHHHHHHHHH
Q psy13113 13 HSPVVKLLAVLRFYA--------------T-GNFQIDSEDYHDISQS-TICRLVAKVSEE 56 (286)
Q Consensus 13 ~~~~~~l~~~L~~L~--------------~-~~~~~~l~~~Fgvs~s-tv~~~~~~v~~~ 56 (286)
.+++++|+.+|..|+ . ..+..++|...|+|++ |++|+++++.+.
T Consensus 138 ~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~~ 197 (238)
T 2bgc_A 138 NGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQE 197 (238)
T ss_dssp THHHHHHHHHHHHHHHHHEEEETTEEEECCSCCCHHHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHhCCCCCCceEEEeccCCHHHHHHHhCCChHHHHHHHHHHHHHC
Confidence 467889999988765 1 4678899999999995 999999987643
No 192
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=74.38 E-value=5.3 Score=31.20 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=28.5
Q ss_pred CCHHHHH-HHHHHHh-hcCCChHhhhhhccccHhHHHHHHHH
Q psy13113 13 HSPVVKL-LAVLRFY-ATGNFQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 13 ~~~~~~l-~~~L~~L-~~~~~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
+++.+-. +..|+.. ..+.+..+||..+|++++|+++.+++
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~ 80 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVAN 80 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 5554433 3334332 34689999999999999999997763
No 193
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=74.09 E-value=2 Score=28.10 Aligned_cols=27 Identities=11% Similarity=0.108 Sum_probs=23.3
Q ss_pred HhhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 25 FYATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 25 ~L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
+...|.++.++|...|||++|++++.+
T Consensus 11 r~~~glsq~~lA~~~gis~~~i~~~e~ 37 (77)
T 2k9q_A 11 RIRLSLTAKSVAEEMGISRQQLCNIEQ 37 (77)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 345688999999999999999998765
No 194
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=74.07 E-value=3.2 Score=31.06 Aligned_cols=42 Identities=7% Similarity=-0.067 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHhh-c-CCChHhhhhhccccHhHHHHHHHHH
Q psy13113 12 IHSPVVKLLAVLRFYA-T-GNFQIDSEDYHDISQSTICRLVAKV 53 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L~-~-~~~~~~l~~~Fgvs~stv~~~~~~v 53 (286)
.++..+--++.+.+.. . +.+..+|+...+++++|+++++++.
T Consensus 32 gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~L 75 (147)
T 4b8x_A 32 GLTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRL 75 (147)
T ss_dssp TCCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4666554333333333 3 3688999999999999999988644
No 195
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=74.02 E-value=5.1 Score=28.67 Aligned_cols=45 Identities=11% Similarity=0.071 Sum_probs=32.8
Q ss_pred CCCCHHH-HHHHHHHHhhcCCChHhhhhhcc----ccHhHHHHHHHHHHHH
Q psy13113 11 VIHSPVV-KLLAVLRFYATGNFQIDSEDYHD----ISQSTICRLVAKVSEE 56 (286)
Q Consensus 11 ~~~~~~~-~l~~~L~~L~~~~~~~~l~~~Fg----vs~stv~~~~~~v~~~ 56 (286)
..+++.+ .++.+|+. ..+.+..+++..++ ++++|+++++++....
T Consensus 6 ~~lt~~~~~vL~~l~~-~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~ 55 (123)
T 1okr_A 6 YEISSAEWEVMNIIWM-KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKK 55 (123)
T ss_dssp CCCCHHHHHHHHHHHH-HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHh-CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHC
Confidence 3466644 44445544 56689999999998 8899999998876654
No 196
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=73.89 E-value=4.3 Score=33.44 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHhhc---CCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 13 HSPVVKLLAVLRFYAT---GNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 13 ~~~~~~l~~~L~~L~~---~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
++.-++.+-.|..|+. +.+..+++..+|++++|++++++...+.
T Consensus 4 v~sl~r~l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~~ 50 (249)
T 1mkm_A 4 MNTLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEK 50 (249)
T ss_dssp CTTHHHHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3444566666667654 4689999999999999999999977654
No 197
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=73.87 E-value=3.7 Score=29.76 Aligned_cols=33 Identities=3% Similarity=-0.047 Sum_probs=26.3
Q ss_pred HHHhh--cCCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 23 LRFYA--TGNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 23 L~~L~--~~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
|..|. .+.+..+++..+|+|++|+++.++....
T Consensus 48 L~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~ 82 (122)
T 1u2w_A 48 TYALCQDEELCVCDIANILGVTIANASHHLRTLYK 82 (122)
T ss_dssp HHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44454 3458999999999999999999987654
No 198
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=73.80 E-value=2.4 Score=27.41 Aligned_cols=26 Identities=15% Similarity=0.005 Sum_probs=22.8
Q ss_pred hhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 26 YATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 26 L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
...|.++.++|...|+|++|++++.+
T Consensus 20 ~~~g~s~~~lA~~~gis~~~i~~~e~ 45 (76)
T 3bs3_A 20 AEKQRTNRWLAEQMGKSENTISRWCS 45 (76)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 44688999999999999999998765
No 199
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=73.76 E-value=2.7 Score=27.31 Aligned_cols=33 Identities=12% Similarity=-0.007 Sum_probs=25.5
Q ss_pred HHHHHHHh--hcCCChHhhhhhccccHhHHHHHHH
Q psy13113 19 LLAVLRFY--ATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 19 l~~~L~~L--~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
+.-.|..+ ..|.++.++|...|+|++|++++.+
T Consensus 8 ~~~~l~~~r~~~g~sq~~lA~~~gis~~~i~~~e~ 42 (78)
T 3b7h_A 8 VSEHLMELITQQNLTINRVATLAGLNQSTVNAMFE 42 (78)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 33344444 4678999999999999999998865
No 200
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=73.76 E-value=0.67 Score=36.80 Aligned_cols=44 Identities=16% Similarity=0.050 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHH
Q psy13113 8 ARGVIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 8 ~~~~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
++.+.++++ ++--...++..|.+...+|..+|||.+|++++++.
T Consensus 138 Gr~~~~~~~-~~~~i~~l~~~G~s~~~Ia~~l~vs~~Tvyr~l~~ 181 (193)
T 3uj3_X 138 GRPPKLTKA-EWEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPA 181 (193)
T ss_dssp ---------------------------------------------
T ss_pred CCCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 333444433 34444555678899999999999999999998864
No 201
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=73.73 E-value=5.1 Score=30.08 Aligned_cols=29 Identities=17% Similarity=0.286 Sum_probs=24.4
Q ss_pred cCCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 28 TGNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 28 ~~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
.+.+..+++..+|+|++||++.+++....
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~ 81 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATM 81 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHC
Confidence 45799999999999999999988765443
No 202
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=73.68 E-value=3 Score=26.64 Aligned_cols=35 Identities=20% Similarity=0.049 Sum_probs=26.8
Q ss_pred HHHHHHHHHhh--cCCChHhhhhhccccHhHHHHHHH
Q psy13113 17 VKLLAVLRFYA--TGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 17 ~~l~~~L~~L~--~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
..+.-.|..++ .|.++.++|...|+|++|++++.+
T Consensus 12 ~~~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~ 48 (74)
T 1y7y_A 12 VKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVER 48 (74)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 33444454444 678999999999999999998764
No 203
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=73.55 E-value=2.3 Score=31.33 Aligned_cols=42 Identities=12% Similarity=-0.081 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHhh--cCCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 12 IHSPVVKLLAVLRFYA--TGNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L~--~~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
.+++.+- .+|..|. .+.+..+++..++++++|+++.+++...
T Consensus 33 glt~~q~--~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 76 (140)
T 3hsr_A 33 DLTYTGY--IVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEK 76 (140)
T ss_dssp TCCHHHH--HHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHH--HHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 4565543 3334443 3458999999999999999998876543
No 204
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=73.43 E-value=2.4 Score=40.12 Aligned_cols=49 Identities=16% Similarity=0.128 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHhh---cCCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 11 VIHSPVVKLLAVLRFYA---TGNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~L~---~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
..||+.++-.+.|+|+- .+.++..+|..+|||.+||..+.++....|-.
T Consensus 549 ~~Lp~~er~Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~kLR~ 600 (613)
T 3iyd_F 549 AGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 (613)
T ss_dssp TSSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTTTTS
T ss_pred HcCCHHHHHHHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHHhhC
Confidence 36899999999998873 67899999999999999999998887766643
No 205
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=73.10 E-value=5.4 Score=31.82 Aligned_cols=43 Identities=9% Similarity=0.012 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHhh-------------cCCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 13 HSPVVKLLAVLRFYA-------------TGNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 13 ~~~~~~l~~~L~~L~-------------~~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
.+++++++.+|..|+ ...+..++|...|+|+.|++|+++++.+
T Consensus 151 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 206 (232)
T 2gau_A 151 KHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVS 206 (232)
T ss_dssp SCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 578899999986653 1347889999999999999999987754
No 206
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=72.98 E-value=3.6 Score=29.65 Aligned_cols=29 Identities=3% Similarity=-0.004 Sum_probs=23.9
Q ss_pred hcCCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 27 ATGNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 27 ~~~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
....+..+++..+|+|++|+++.++...+
T Consensus 32 ~~~~~~~eLa~~lgis~stvs~~L~~L~~ 60 (118)
T 2jsc_A 32 DGVCYPGQLAAHLGLTRSNVSNHLSCLRG 60 (118)
T ss_dssp TTCCSTTTHHHHHSSCHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34468889999999999999998876544
No 207
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=72.85 E-value=2.6 Score=30.96 Aligned_cols=27 Identities=7% Similarity=-0.069 Sum_probs=23.8
Q ss_pred HhhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 25 FYATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 25 ~L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
+-..|.++.++|..+|+|++|+++|-+
T Consensus 80 R~~~glsq~~la~~~g~s~~~i~~~E~ 106 (133)
T 3o9x_A 80 RKKLSLTQKEASEIFGGGVNAFSRYEK 106 (133)
T ss_dssp HHHTTCCHHHHHHHHCSCTTHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 445789999999999999999999865
No 208
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=72.81 E-value=4.4 Score=25.64 Aligned_cols=34 Identities=18% Similarity=0.036 Sum_probs=26.6
Q ss_pred HHHHHHHHhh--cCCChHhhhhhcc--ccHhHHHHHHH
Q psy13113 18 KLLAVLRFYA--TGNFQIDSEDYHD--ISQSTICRLVA 51 (286)
Q Consensus 18 ~l~~~L~~L~--~~~~~~~l~~~Fg--vs~stv~~~~~ 51 (286)
.+.-.|..++ .|.++.++|...| +|++|++++.+
T Consensus 8 ~~g~~l~~~r~~~glsq~~lA~~~g~~is~~~i~~~e~ 45 (71)
T 2ewt_A 8 QLGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYER 45 (71)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCCcCCHHHHHHHHC
Confidence 3444555554 6789999999999 99999998775
No 209
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=72.73 E-value=2.9 Score=26.94 Aligned_cols=26 Identities=12% Similarity=-0.072 Sum_probs=22.7
Q ss_pred hhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 26 YATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 26 L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
...|.++.++|...|+|++|++++.+
T Consensus 15 ~~~gls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 15 KKLKIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34688999999999999999998865
No 210
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=72.43 E-value=6.5 Score=32.45 Aligned_cols=30 Identities=17% Similarity=0.158 Sum_probs=25.7
Q ss_pred hcCCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 27 ATGNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 27 ~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
..+.+..++|..+|++++|+++.++...+.
T Consensus 164 ~~~~s~~eLA~~lglsksTv~r~L~~Le~~ 193 (244)
T 2wte_A 164 TKGTGITELAKMLDKSEKTLINKIAELKKF 193 (244)
T ss_dssp HTCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456799999999999999999998877653
No 211
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=72.01 E-value=3.5 Score=28.52 Aligned_cols=26 Identities=15% Similarity=-0.095 Sum_probs=22.8
Q ss_pred hhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 26 YATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 26 L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
...|.++.++|...|||++|+++|-+
T Consensus 40 ~~~glsq~elA~~lgvs~~~is~~E~ 65 (99)
T 2ppx_A 40 RALKLTQEEFSARYHIPLGTLRDWEQ 65 (99)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 34688999999999999999999854
No 212
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=71.92 E-value=5.3 Score=29.99 Aligned_cols=34 Identities=6% Similarity=-0.050 Sum_probs=27.6
Q ss_pred HHHhhc-CCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 23 LRFYAT-GNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 23 L~~L~~-~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
|+.|.. ..++.+++...|+|++|+++.+++..+.
T Consensus 30 L~~L~~g~~~~~eLa~~lgis~~tls~~L~~Le~~ 64 (146)
T 2f2e_A 30 VRDAFEGLTRFGEFQKSLGLAKNILAARLRNLVEH 64 (146)
T ss_dssp HHHHHTTCCSHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 344444 4799999999999999999999887765
No 213
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=71.88 E-value=5.8 Score=31.63 Aligned_cols=44 Identities=9% Similarity=0.018 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 11 VIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
..+++.+-.++...+-..+.+..+|+..++++++|+++.+++..
T Consensus 44 ~gLt~~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le 87 (207)
T 2fxa_A 44 YDLNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLE 87 (207)
T ss_dssp GTCCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34666554433333334568999999999999999999886543
No 214
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=71.68 E-value=3.8 Score=26.98 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhh--cCCChHhhhhhccccHhHHHHHHH
Q psy13113 16 VVKLLAVLRFYA--TGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 16 ~~~l~~~L~~L~--~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
...+.-.|..++ .|.++.++|...|||++|++++-+
T Consensus 9 ~~~~g~~lk~~R~~~glsq~~lA~~~gis~~~i~~~e~ 46 (82)
T 3s8q_A 9 LSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIER 46 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 345555555555 688999999999999999998865
No 215
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=71.56 E-value=9.4 Score=25.60 Aligned_cols=27 Identities=15% Similarity=-0.002 Sum_probs=23.2
Q ss_pred HhhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 25 FYATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 25 ~L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
+...|.++.++|...|||++|+++|.+
T Consensus 22 r~~~glsq~~lA~~~gis~~~is~~e~ 48 (91)
T 1x57_A 22 RQSKGLTQKDLATKINEKPQVIADYES 48 (91)
T ss_dssp HHTTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 344678999999999999999998875
No 216
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=71.56 E-value=37 Score=28.77 Aligned_cols=125 Identities=11% Similarity=0.012 Sum_probs=63.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHhhcccccC---Cchh---HHHHHHHhhh-
Q psy13113 8 ARGVIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAKCHQQWIH---FPED---LQTAKNQFSG- 80 (286)
Q Consensus 8 ~~~~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~~~~i~---~P~~---~~~~~~~f~~- 80 (286)
++...++. ++|.- +..-....+.+.++..++||.+||.+++++. -+.......+. -|.. ..........
T Consensus 67 grp~~~~~-~~i~~-~v~~~~~~t~~~ia~~l~vs~~tV~r~L~~~--g~~~k~~~~~~~~l~~~~~~~r~~~~~~~l~~ 142 (345)
T 3hot_A 67 KPPKRYED-AELQA-LLDEDDAQTQKQLAEQLEVSQQAVSNRLREM--GKIQKVGRWVPHELNERQMERRKNTCEILLSR 142 (345)
T ss_dssp CCCCSSCH-HHHHH-HHHHCSCCCHHHHHHHTTSCHHHHHHHHHHT--TCEEEECCEESSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccH-HHHHH-HHHhCccchHHHHHHHHCCCHHHHHHHHHHh--CCeeeccccccccCChhhhhhhHHHHHHHHHh
Confidence 44455554 33333 2233344688899999999999999998862 11111111111 1221 1111111111
Q ss_pred --hcCCCCceEeeeeeeEEEecCCCCC-------C--ccccccCCCccccceeeecCCCccEEEeccC
Q psy13113 81 --IAGFPRVVVGCIDGTHVPIELPSIE-------N--GEHYRNRKHFYSINVQVIGGPNLEIYDVVAS 137 (286)
Q Consensus 81 --~~~~p~~~~g~iDgt~i~i~~P~~~-------~--~~~y~~~k~~~s~~~q~vvd~~g~i~~~~~~ 137 (286)
...+++- +...|-+.+....+... + ........+.-.+.+.+..+..|.+-+....
T Consensus 143 ~~~~~~~~~-Iv~~DE~~~~~~~~~~~~~w~~~g~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~ 209 (345)
T 3hot_A 143 YKRKSFLHR-IVTGDEKWIFFVNPKRKKSYVDPGQPATSTARPNRFGKKTMLCVWWDQSGVIYYELLK 209 (345)
T ss_dssp HHHSCCGGG-EEEEEEEEEESCCCCCCEEEECSSSCCCCEECCCTTCCEEEEEEEEESSSEEEEEEEC
T ss_pred hCCcchHHh-hhcccceeEEecCccceeeeccCCCCCCCCcCccCcCCcEEEEEEEcccCceeeEecC
Confidence 1246666 88899998886522110 0 0011111122355567777888866555543
No 217
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=71.42 E-value=3.4 Score=27.29 Aligned_cols=34 Identities=21% Similarity=0.069 Sum_probs=26.9
Q ss_pred HHHHHHHHhh--cCCChHhhhhhccccHhHHHHHHH
Q psy13113 18 KLLAVLRFYA--TGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 18 ~l~~~L~~L~--~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
.+.-.|..++ .|.++.++|...|+|++|++++.+
T Consensus 14 ~~~~~l~~~R~~~gltq~elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 14 ALLDLLLEARSAAGITQKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 3444555544 689999999999999999998865
No 218
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=71.41 E-value=3.1 Score=29.30 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=21.5
Q ss_pred ChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 31 FQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 31 ~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
+.++|+..||||++||.+.+.....
T Consensus 45 s~~eLa~~lgVSr~tVr~al~~L~~ 69 (102)
T 2b0l_A 45 VASKIADRVGITRSVIVNALRKLES 69 (102)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 7889999999999999998876543
No 219
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=71.39 E-value=4.1 Score=33.05 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhh-cCCCh--HhhhhhccccHhHHHHHHHHHHHH
Q psy13113 16 VVKLLAVLRFYA-TGNFQ--IDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 16 ~~~l~~~L~~L~-~~~~~--~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
.+..+.+|+.|. .+.+. .++|..++++++|+++.+++....
T Consensus 8 ~e~yL~~i~~l~~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~ 51 (226)
T 2qq9_A 8 TEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERD 51 (226)
T ss_dssp HHHHHHHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcCCCccHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 577788888885 35555 899999999999999999877644
No 220
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=71.36 E-value=3.9 Score=31.10 Aligned_cols=44 Identities=20% Similarity=0.163 Sum_probs=27.3
Q ss_pred CCCCHHHH-HHHHHHHh-hcCCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 11 VIHSPVVK-LLAVLRFY-ATGNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 11 ~~~~~~~~-l~~~L~~L-~~~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
..+++.+- ++..|+.. ..+.+..+|+..++++++|+++++++..
T Consensus 42 ~glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le 87 (168)
T 3u2r_A 42 FELSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLD 87 (168)
T ss_dssp TTCCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 34666443 33333333 2467999999999999999999887554
No 221
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=71.18 E-value=7.4 Score=27.37 Aligned_cols=35 Identities=6% Similarity=-0.115 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhc----CCChHhhhhhccccHhHHHHHHH
Q psy13113 17 VKLLAVLRFYAT----GNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 17 ~~l~~~L~~L~~----~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
..+.-.|..++. |.++.++|...|||++|+++|.+
T Consensus 33 ~~~g~~lk~~R~~~~~glsq~elA~~~gis~~~is~~E~ 71 (107)
T 2jvl_A 33 KEVGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYER 71 (107)
T ss_dssp HHHHHHHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345555665554 78999999999999999998754
No 222
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=70.88 E-value=7.6 Score=28.39 Aligned_cols=47 Identities=9% Similarity=0.019 Sum_probs=32.5
Q ss_pred CCCCCHHHH-HHHHHHHhhc----CCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 10 GVIHSPVVK-LLAVLRFYAT----GNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 10 ~~~~~~~~~-l~~~L~~L~~----~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
...++..+- |++.|.++.. +.+...+|...|+|.+||.+.++.....
T Consensus 27 ~lgLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~k 78 (128)
T 2vn2_A 27 QLGLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQK 78 (128)
T ss_dssp TTTCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 334555444 4445554422 2689999999999999999988876543
No 223
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=70.81 E-value=2.6 Score=28.56 Aligned_cols=26 Identities=23% Similarity=0.130 Sum_probs=23.1
Q ss_pred hhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 26 YATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 26 L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
...|.++.++|...|||++|++++.+
T Consensus 27 ~~~glsq~~lA~~~gis~~~is~~e~ 52 (92)
T 1lmb_3 27 NELGLSQESVADKMGMGQSGVGALFN 52 (92)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 44689999999999999999999875
No 224
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=70.50 E-value=3.2 Score=31.14 Aligned_cols=44 Identities=14% Similarity=0.003 Sum_probs=29.8
Q ss_pred CCCHHHH-HHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 12 IHSPVVK-LLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 12 ~~~~~~~-l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
.++..+. ++..|+.-..+.+..+++..+|++++|+++.+++...
T Consensus 44 ~l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~ 88 (160)
T 3boq_A 44 GLSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIK 88 (160)
T ss_dssp SCCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 3555433 3333323344679999999999999999998875543
No 225
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=70.44 E-value=3.4 Score=28.23 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=27.1
Q ss_pred HHHHHHHHHhh--cCCChHhhhhhccccHhHHHHHHH
Q psy13113 17 VKLLAVLRFYA--TGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 17 ~~l~~~L~~L~--~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
..+.-.|..++ .|.++.++|...|||++|+++|.+
T Consensus 8 ~~~~~~lk~~r~~~glsq~~lA~~~gis~~~is~~e~ 44 (94)
T 2kpj_A 8 AIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCK 44 (94)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 34445555555 567999999999999999998765
No 226
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=70.41 E-value=3.9 Score=27.94 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=23.7
Q ss_pred HhhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 25 FYATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 25 ~L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
+...|.++.+||...|||++|++++.+
T Consensus 33 R~~~glTq~eLA~~~GiS~~tis~iE~ 59 (88)
T 3t76_A 33 LIDRDMKKGELREAVGVSKSTFAKLGK 59 (88)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345789999999999999999998875
No 227
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=70.25 E-value=6.3 Score=29.02 Aligned_cols=35 Identities=11% Similarity=0.205 Sum_probs=27.6
Q ss_pred HHHHhhcC-CChHhhhhhc-cccHhHHHHHHHHHHHH
Q psy13113 22 VLRFYATG-NFQIDSEDYH-DISQSTICRLVAKVSEE 56 (286)
Q Consensus 22 ~L~~L~~~-~~~~~l~~~F-gvs~stv~~~~~~v~~~ 56 (286)
.|..|..+ .++.+|+..+ |+|++|+++.+++....
T Consensus 40 IL~~L~~g~~~~~eLa~~l~gis~~tls~~L~~Le~~ 76 (131)
T 1yyv_A 40 ILVALRDGTHRFSDLRRXMGGVSEXMLAQSLQALEQD 76 (131)
T ss_dssp HHHHGGGCCEEHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHhccCCHHHHHHHHHHHHHC
Confidence 45566554 5899999999 79999999988766554
No 228
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=70.24 E-value=5.9 Score=31.04 Aligned_cols=41 Identities=12% Similarity=0.120 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhc---CCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 15 PVVKLLAVLRFYAT---GNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 15 ~~~~l~~~L~~L~~---~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
..++..-.|..|.. ..+..+||..||||++|+.+-+.....
T Consensus 19 ~~~R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~ 62 (187)
T 1j5y_A 19 RQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRS 62 (187)
T ss_dssp HHHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34555556677763 369999999999999999998875443
No 229
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=69.85 E-value=12 Score=26.41 Aligned_cols=39 Identities=10% Similarity=0.106 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHhh--cCCChHhhhhhccccHhHHHHHHH
Q psy13113 13 HSPVVKLLAVLRFYA--TGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 13 ~~~~~~l~~~L~~L~--~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
......+.-.|..++ .|.++.++|...|||++|++++-+
T Consensus 16 ~~~~~~~g~~lr~~R~~~gltq~elA~~~gis~~~is~~E~ 56 (114)
T 3vk0_A 16 QDLRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVER 56 (114)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345566777776666 678999999999999999998754
No 230
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=69.81 E-value=4.1 Score=26.81 Aligned_cols=34 Identities=21% Similarity=0.192 Sum_probs=26.7
Q ss_pred HHHHHHHHhh--cCCChHhhhhhccccHhHHHHHHH
Q psy13113 18 KLLAVLRFYA--TGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 18 ~l~~~L~~L~--~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
.+.-.|..++ .|.++.++|...|+|++|++++.+
T Consensus 10 ~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 10 CLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 3444555554 678999999999999999998875
No 231
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=69.72 E-value=3.2 Score=26.54 Aligned_cols=22 Identities=5% Similarity=-0.206 Sum_probs=19.6
Q ss_pred ChHhhhhhccccHhHHHHHHHH
Q psy13113 31 FQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 31 ~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
+..+++..+|+|++|++++++.
T Consensus 12 ~~~eva~~lgvsrstiy~~~~~ 33 (66)
T 1z4h_A 12 DLKFIMADTGFGKTFIYDRIKS 33 (66)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHC
Confidence 5678999999999999999875
No 232
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=69.42 E-value=6.1 Score=31.75 Aligned_cols=40 Identities=13% Similarity=0.100 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhc---CCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 16 VVKLLAVLRFYAT---GNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 16 ~~~l~~~L~~L~~---~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
.+..+-+++.|.. +.+..++|..+++|++|+++.+++...
T Consensus 4 ~edYL~~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~ 46 (214)
T 3hrs_A 4 KEDYLKCLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLA 46 (214)
T ss_dssp HHHHHHHHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 4555666777653 468999999999999999999988754
No 233
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=68.79 E-value=3.7 Score=34.15 Aligned_cols=47 Identities=15% Similarity=0.262 Sum_probs=37.0
Q ss_pred CCCCCHHHHHHHHHHHhhc---CCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 10 GVIHSPVVKLLAVLRFYAT---GNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 10 ~~~~~~~~~l~~~L~~L~~---~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
...++.-++.+-.|..|+. +.+..+++...|++++|++++++...+.
T Consensus 16 ~~~v~sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~~ 65 (260)
T 2o0y_A 16 DAGVRSVTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCAR 65 (260)
T ss_dssp --CCHHHHHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3446667788888888863 5689999999999999999999877654
No 234
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=68.40 E-value=5.6 Score=32.60 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHhhc---CCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 14 SPVVKLLAVLRFYAT---GNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 14 ~~~~~l~~~L~~L~~---~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
+.-++.+-.|..|+. +.+..+++..+|++++|++++++...+.
T Consensus 3 ~sl~r~l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~ 48 (241)
T 2xrn_A 3 QVIARAASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEE 48 (241)
T ss_dssp CHHHHHHHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344566777777764 3588999999999999999999887654
No 235
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=68.14 E-value=2.5 Score=36.18 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=19.8
Q ss_pred ChHhhhhhccccHhHHHHHHHH
Q psy13113 31 FQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 31 ~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
+.+++|...|||.+|||++++.
T Consensus 2 ti~diA~~agVS~~TVSrvLn~ 23 (340)
T 1qpz_A 2 TIKDVAKRANVSTTTVSHVINK 23 (340)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHcC
Confidence 5689999999999999999873
No 236
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=68.06 E-value=7.2 Score=27.63 Aligned_cols=29 Identities=7% Similarity=0.023 Sum_probs=24.6
Q ss_pred cCCChHhhhhhc-cccHhHHHHHHHHHHHH
Q psy13113 28 TGNFQIDSEDYH-DISQSTICRLVAKVSEE 56 (286)
Q Consensus 28 ~~~~~~~l~~~F-gvs~stv~~~~~~v~~~ 56 (286)
.+.++.+|+..+ |++++|+++.+++....
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~ 63 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKD 63 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHC
Confidence 457999999999 99999999988766544
No 237
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=67.87 E-value=5 Score=27.25 Aligned_cols=38 Identities=16% Similarity=0.048 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHH
Q psy13113 13 HSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 13 ~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
..+.++|--. +-..|.++.++|...|||++|++++.+.
T Consensus 7 ~~~g~~l~~~--r~~~gltq~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 7 PRPGDIIQES--LDELNVSLREFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp CCHHHHHHHH--HHHHTCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred CChhHHHHHH--HHHcCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 3444554322 3445789999999999999999998863
No 238
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=67.68 E-value=1.9 Score=27.76 Aligned_cols=22 Identities=18% Similarity=0.034 Sum_probs=19.4
Q ss_pred ChHhhhhhccccHhHHHHHHHH
Q psy13113 31 FQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 31 ~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
+..++|..+|||.+|+.+++..
T Consensus 4 t~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 4 NKKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp EHHHHHHHTTCCHHHHHHHTTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHC
Confidence 4578999999999999998875
No 239
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=67.13 E-value=9.2 Score=28.52 Aligned_cols=25 Identities=8% Similarity=0.038 Sum_probs=21.6
Q ss_pred CChHhhhhhccccHhHHHHHHHHHH
Q psy13113 30 NFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 30 ~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
.+..+||...+++++|+++++++..
T Consensus 53 ~t~~eLa~~l~~~~~tvsr~v~~Le 77 (148)
T 4fx0_A 53 LTMSELAARIGVERTTLTRNLEVMR 77 (148)
T ss_dssp -CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCChhhHHHHHHHHH
Confidence 5899999999999999999887654
No 240
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=66.91 E-value=4.6 Score=28.85 Aligned_cols=45 Identities=9% Similarity=-0.007 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHh------hcCC---ChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 12 IHSPVVKLLAVLRFY------ATGN---FQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L------~~~~---~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
..+..+++.-.|... ..|. +.++||..||||++||.+.+......
T Consensus 7 ~~~~~~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~ 60 (113)
T 3tqn_A 7 KKPIYQQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDD 60 (113)
T ss_dssp SSCHHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 345555555544332 2232 67899999999999999988876543
No 241
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=66.49 E-value=16 Score=26.56 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHHh-hcC--------CChHhhhhhccccHhHHHHHHHHHH
Q psy13113 11 VIHSPVVKLLAVLRFY-ATG--------NFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~L-~~~--------~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
...+..+++.-.|... ..| .+-+.|+..||||++||.+.+....
T Consensus 8 ~~~~~~~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~ 60 (126)
T 3by6_A 8 QKRPVYLQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELE 60 (126)
T ss_dssp CCCCHHHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4456777777666542 222 2778999999999999999877654
No 242
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=66.47 E-value=2.5 Score=36.06 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=20.6
Q ss_pred CChHhhhhhccccHhHHHHHHHH
Q psy13113 30 NFQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 30 ~~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
.+.+++|...|||.+|||++++.
T Consensus 3 ~ti~dvA~~agVS~~TVSrvln~ 25 (332)
T 2hsg_A 3 VTIYDVAREASVSMATVSRVVNG 25 (332)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 46789999999999999999874
No 243
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=66.39 E-value=11 Score=26.28 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=26.0
Q ss_pred HHhhcCCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 24 RFYATGNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 24 ~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
..+....+..++|..+|+|.+++++.|++..
T Consensus 16 ~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~ 46 (108)
T 3oou_A 16 EHFSEGMSLKTLGNDFHINAVYLGQLFQKEM 46 (108)
T ss_dssp HHTTSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3345567899999999999999999998774
No 244
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=66.35 E-value=4.4 Score=30.74 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=26.6
Q ss_pred HHHhh-cCCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 23 LRFYA-TGNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 23 L~~L~-~~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
|..|. ...+..+|+..+|+|++||++.++...++
T Consensus 64 L~~L~~~~~t~~eLa~~lgls~stvs~hL~~L~~a 98 (151)
T 3f6v_A 64 VQLLTSGEQTVNNLAAHFPASRSAISQHLRVLTEA 98 (151)
T ss_dssp HHHGGGCCEEHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 33444 44689999999999999999988866554
No 245
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=66.18 E-value=3.5 Score=28.69 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=23.7
Q ss_pred HhhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 25 FYATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 25 ~L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
+-..|.++.++|...|||++|++++.+
T Consensus 27 r~~~gltq~~lA~~~gis~~~is~~e~ 53 (104)
T 3cec_A 27 LDDLDINTANFAEILGVSNQTIQEVIN 53 (104)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345688999999999999999999876
No 246
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=66.01 E-value=6.9 Score=32.33 Aligned_cols=46 Identities=11% Similarity=0.119 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHHHHhhc---CCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 11 VIHSPVVKLLAVLRFYAT---GNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~L~~---~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
..++.-++.+-.|..|+. +.+..+++..+|++++|++++++...+.
T Consensus 8 ~~v~s~~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~~ 56 (257)
T 2g7u_A 8 DYIQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKL 56 (257)
T ss_dssp CCCHHHHHHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346666777778888864 4689999999999999999999987653
No 247
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=65.96 E-value=8.2 Score=27.04 Aligned_cols=34 Identities=6% Similarity=-0.114 Sum_probs=25.5
Q ss_pred HHHHhhcC-CChHhhhhhc-cccHhHHHHHHHHHHH
Q psy13113 22 VLRFYATG-NFQIDSEDYH-DISQSTICRLVAKVSE 55 (286)
Q Consensus 22 ~L~~L~~~-~~~~~l~~~F-gvs~stv~~~~~~v~~ 55 (286)
.|..|..+ .++.+++..+ |+|++|+++.+++...
T Consensus 30 IL~~L~~~~~~~~eL~~~l~gis~~~ls~~L~~Le~ 65 (107)
T 2fsw_A 30 IIFQINRRIIRYGELKRAIPGISEKMLIDELKFLCG 65 (107)
T ss_dssp HHHHHTTSCEEHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcCHHHHHHHcccCCHHHHHHHHHHHHH
Confidence 34445444 6899999999 5999999998875543
No 248
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=65.76 E-value=5.7 Score=27.14 Aligned_cols=27 Identities=7% Similarity=-0.074 Sum_probs=23.1
Q ss_pred HhhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 25 FYATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 25 ~L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
+...|.++.++|...|||++|+++|.+
T Consensus 13 r~~~gltq~~lA~~~gis~~~is~~e~ 39 (99)
T 2l49_A 13 RKSEYLSRQQLADLTGVPYGTLSYYES 39 (99)
T ss_dssp HHHTTCCHHHHHHHHCCCHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345688999999999999999998765
No 249
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=65.60 E-value=11 Score=26.19 Aligned_cols=45 Identities=20% Similarity=0.146 Sum_probs=32.6
Q ss_pred CCCCHH-HHHHHHHHHhh-----cCCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 11 VIHSPV-VKLLAVLRFYA-----TGNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 11 ~~~~~~-~~l~~~L~~L~-----~~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
..+++- -.++..|+..+ ...++..|+...++++||+++.+.+...
T Consensus 12 ~gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~ 62 (96)
T 2obp_A 12 DGIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQA 62 (96)
T ss_dssp -CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHHH
Confidence 446664 44555577773 3369999999999999999998876543
No 250
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=65.57 E-value=9.2 Score=29.10 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=25.7
Q ss_pred HHHhhcC--CChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 23 LRFYATG--NFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 23 L~~L~~~--~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
|..|..+ .++.++|..+|+|.+|+.+.+++..+
T Consensus 9 l~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~ 43 (162)
T 3i4p_A 9 LRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEE 43 (162)
T ss_dssp HHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444433 59999999999999999998876654
No 251
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=65.49 E-value=4.7 Score=29.80 Aligned_cols=43 Identities=5% Similarity=0.039 Sum_probs=29.8
Q ss_pred CCCHHH-HHHHHHHHhhcCCChHhhhhhcc----ccHhHHHHHHHHHH
Q psy13113 12 IHSPVV-KLLAVLRFYATGNFQIDSEDYHD----ISQSTICRLVAKVS 54 (286)
Q Consensus 12 ~~~~~~-~l~~~L~~L~~~~~~~~l~~~Fg----vs~stv~~~~~~v~ 54 (286)
.+++.+ .++.+|+....+.+..+++..++ ++.+||++++++..
T Consensus 6 ~lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe 53 (138)
T 2g9w_A 6 RLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLA 53 (138)
T ss_dssp GCCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 455544 44444443335679999999997 89999998886543
No 252
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=65.25 E-value=6.5 Score=29.35 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=24.6
Q ss_pred HHhhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 24 RFYATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 24 ~~L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
.+...|.++.++|...|+|+++++++.+
T Consensus 76 ~R~~~glTq~elA~~lGis~s~is~~E~ 103 (141)
T 3kxa_A 76 LRMKKGFTQSELATAAGLPQPYLSRIEN 103 (141)
T ss_dssp HHHHTTCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3456789999999999999999999876
No 253
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=65.16 E-value=9.5 Score=27.00 Aligned_cols=39 Identities=18% Similarity=0.088 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHhh--cCCChHhhhhhccccHhHHHHHHH
Q psy13113 13 HSPVVKLLAVLRFYA--TGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 13 ~~~~~~l~~~L~~L~--~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
-.....+.-.|..++ .|.++.++|...|||+++++++-+
T Consensus 23 ~~~~~~~g~~l~~~R~~~glsq~~lA~~~gis~~~is~~E~ 63 (117)
T 3f52_A 23 PLLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELER 63 (117)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 345667777777666 578999999999999999998865
No 254
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=65.08 E-value=4.3 Score=28.62 Aligned_cols=40 Identities=10% Similarity=-0.046 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 11 VIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
....+-+.|.-.+ +-..|.++.++|...|||++|++++.+
T Consensus 10 ~~~~pG~~Lk~~l-r~~~gltq~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 10 RPIHPGEILAEEL-GFLDKMSANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp CCCCHHHHHHHHH-HHTTSCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCCHHHHHHHHH-HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3455555544322 345688999999999999999999876
No 255
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=64.97 E-value=4.5 Score=31.50 Aligned_cols=29 Identities=7% Similarity=-0.080 Sum_probs=24.6
Q ss_pred HHHhhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 23 LRFYATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 23 L~~L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
-++-.+|.++.++|...|||++|+++|-+
T Consensus 97 ~lR~~~glTQ~elA~~LGvsr~tis~yE~ 125 (170)
T 2auw_A 97 DWMHRNNLSLTTAAEALGISRRMVSYYRT 125 (170)
T ss_dssp HHHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 34466899999999999999999998654
No 256
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=64.52 E-value=6.2 Score=27.37 Aligned_cols=37 Identities=16% Similarity=0.121 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhh--cCCChHhhhhhccccHhHHHHHHH
Q psy13113 15 PVVKLLAVLRFYA--TGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 15 ~~~~l~~~L~~L~--~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
....+.-.|..++ .|.++.++|...|||++|++++-+
T Consensus 25 ~~~~ig~~lr~~R~~~gltq~elA~~~gis~~~is~iE~ 63 (99)
T 3g5g_A 25 LLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIER 63 (99)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 4456666666666 688999999999999999998865
No 257
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=64.23 E-value=5.1 Score=29.21 Aligned_cols=46 Identities=4% Similarity=-0.045 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHHHHHhh------cCC---ChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 10 GVIHSPVVKLLAVLRFYA------TGN---FQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 10 ~~~~~~~~~l~~~L~~L~------~~~---~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
....+..+++.-.|...- -|. +.+.||..||||+.||.+.+.....
T Consensus 9 ~~~~~~~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~ 63 (125)
T 3neu_A 9 HADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELER 63 (125)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345677777776665432 222 5789999999999999998877654
No 258
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=64.21 E-value=12 Score=26.06 Aligned_cols=29 Identities=10% Similarity=-0.019 Sum_probs=25.0
Q ss_pred HhhcCCChHhhhhhccccHhHHHHHHHHH
Q psy13113 25 FYATGNFQIDSEDYHDISQSTICRLVAKV 53 (286)
Q Consensus 25 ~L~~~~~~~~l~~~Fgvs~stv~~~~~~v 53 (286)
.+....+..++|..+|+|.+++++.|++.
T Consensus 14 ~~~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 14 NWMRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HTTSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34456789999999999999999999976
No 259
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=64.19 E-value=11 Score=29.70 Aligned_cols=39 Identities=10% Similarity=0.035 Sum_probs=27.3
Q ss_pred HHHHHHHHH-Hhh-c--CCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 16 VVKLLAVLR-FYA-T--GNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 16 ~~~l~~~L~-~L~-~--~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
+.+++-++. +++ + ..+.+++|..+|+|.+|+++.++...
T Consensus 7 q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le 49 (196)
T 3k2z_A 7 QRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALE 49 (196)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHH
Confidence 345555554 333 2 46999999999999998887766543
No 260
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=64.19 E-value=5.3 Score=27.98 Aligned_cols=32 Identities=19% Similarity=0.075 Sum_probs=24.3
Q ss_pred HHHHHhhcCCChHhhhhhccccHhHHHHHHHHH
Q psy13113 21 AVLRFYATGNFQIDSEDYHDISQSTICRLVAKV 53 (286)
Q Consensus 21 ~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v 53 (286)
..|..|+. .+++.+|...||+.||++|+-...
T Consensus 16 ~il~~la~-~gq~~vA~~iGV~~StISR~k~~~ 47 (97)
T 1xwr_A 16 ALLNKIAM-LGTEKTAEAVGVDKSQISRWKRDW 47 (97)
T ss_dssp HHHHHHHH-HCHHHHHHHHTCCTTTHHHHHHHH
T ss_pred HHHHHHHH-HhHHHHHHHhCCCHHHHHHHHhhh
Confidence 33444543 678899999999999999965554
No 261
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=64.07 E-value=10 Score=28.00 Aligned_cols=35 Identities=9% Similarity=0.109 Sum_probs=26.7
Q ss_pred HHHHhhcC-CChHhhhhhc-cccHhHHHHHHHHHHHH
Q psy13113 22 VLRFYATG-NFQIDSEDYH-DISQSTICRLVAKVSEE 56 (286)
Q Consensus 22 ~L~~L~~~-~~~~~l~~~F-gvs~stv~~~~~~v~~~ 56 (286)
.|+.|..| .++.+|+... |+|.+++++.+++....
T Consensus 31 IL~~L~~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~ 67 (131)
T 4a5n_A 31 LFYHMIDGKKRFNEFRRICPSITQRMLTLQLRELEAD 67 (131)
T ss_dssp HHHHHTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCcCHHHHHHHhcccCHHHHHHHHHHHHHC
Confidence 44555544 5999999999 99999999888755443
No 262
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=63.94 E-value=16 Score=27.05 Aligned_cols=29 Identities=7% Similarity=-0.141 Sum_probs=24.5
Q ss_pred cCCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 28 TGNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 28 ~~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
.+.+...+|..+|+|.++|.+++...+.-
T Consensus 50 ~~ps~~~LA~~~~~s~~~v~~~L~~L~~K 78 (135)
T 2v79_A 50 YFPTPNQLQEGMSISVEECTNRLRMFIQK 78 (135)
T ss_dssp CSCCHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34689999999999999999988877653
No 263
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=63.88 E-value=5.8 Score=27.76 Aligned_cols=44 Identities=11% Similarity=-0.034 Sum_probs=31.8
Q ss_pred CCCCH-HHHHHHHHHHhhcCCChHhhhhhcc----ccHhHHHHHHHHHHH
Q psy13113 11 VIHSP-VVKLLAVLRFYATGNFQIDSEDYHD----ISQSTICRLVAKVSE 55 (286)
Q Consensus 11 ~~~~~-~~~l~~~L~~L~~~~~~~~l~~~Fg----vs~stv~~~~~~v~~ 55 (286)
..++. +..++.+|+. ..+.+..+++..++ ++.+||.+++.+..+
T Consensus 31 ~~LT~~e~~VL~~L~~-~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~ 79 (99)
T 2k4b_A 31 FNVSNAELIVMRVIWS-LGEARVDEIYAQIPQELEWSLATVKTLLGRLVK 79 (99)
T ss_dssp CCCCCSCSHHHHHHHH-HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh-CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHH
Confidence 34555 4466667765 45689999999986 578999998876654
No 264
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=63.84 E-value=1.6 Score=34.68 Aligned_cols=43 Identities=9% Similarity=0.062 Sum_probs=0.5
Q ss_pred CCHHHHHHHHHHHhhc-------CCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 13 HSPVVKLLAVLRFYAT-------GNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 13 ~~~~~~l~~~L~~L~~-------~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
.+++++|+.+|..+.. ..+..++|...|+|+.|++|+++++..
T Consensus 141 ~~~~~Rl~~~L~~~~~~~g~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~ 190 (213)
T 1o5l_A 141 KTLREKLMNFLVRHMNEKRELTLPVTLEELSRLFGCARPALSRVFQELER 190 (213)
T ss_dssp C-------------------------------------------------
T ss_pred CCHHHHHHHHHHHHhccCCcccCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5678888888887762 357889999999999999999987754
No 265
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=63.82 E-value=6.3 Score=27.82 Aligned_cols=26 Identities=8% Similarity=0.112 Sum_probs=23.0
Q ss_pred hhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 26 YATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 26 L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
-..|.++.++|...|||++|+++|-+
T Consensus 19 ~~~glsq~~lA~~~gis~~~i~~~e~ 44 (114)
T 3op9_A 19 KEHGLKNHQIAELLNVQTRTVAYYMS 44 (114)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 44688999999999999999998775
No 266
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=63.73 E-value=11 Score=26.86 Aligned_cols=44 Identities=14% Similarity=0.057 Sum_probs=31.8
Q ss_pred CCCCHHH-HHHHHHHHhhcCCChHhhhhhcc----ccHhHHHHHHHHHHH
Q psy13113 11 VIHSPVV-KLLAVLRFYATGNFQIDSEDYHD----ISQSTICRLVAKVSE 55 (286)
Q Consensus 11 ~~~~~~~-~l~~~L~~L~~~~~~~~l~~~Fg----vs~stv~~~~~~v~~ 55 (286)
..+++.+ .++.+|+. ..+.+..+++..++ ++.+||++++++...
T Consensus 6 ~~Lt~~q~~vL~~L~~-~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~ 54 (126)
T 1sd4_A 6 VEISMAEWDVMNIIWD-KKSVSANEIVVEIQKYKEVSDKTIRTLITRLYK 54 (126)
T ss_dssp CCCCHHHHHHHHHHHH-SSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh-cCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Confidence 3566654 55556655 45679999999997 589999998876554
No 267
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=63.52 E-value=8.8 Score=30.10 Aligned_cols=45 Identities=20% Similarity=0.208 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHH
Q psy13113 12 IHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELA 58 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~ 58 (286)
.++..+. -.|.+|..|.+.++++...++|.+||..++.++..-|.
T Consensus 154 ~Lt~rE~--~vl~~l~~g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~ 198 (215)
T 1a04_A 154 QLTPRER--DILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMK 198 (215)
T ss_dssp GSCHHHH--HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHH--HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 3666554 35667889999999999999999999999998887775
No 268
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=63.42 E-value=7.5 Score=27.55 Aligned_cols=28 Identities=21% Similarity=0.093 Sum_probs=24.2
Q ss_pred HHhhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 24 RFYATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 24 ~~L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
.+...|.++.++|...|||++|+++|-+
T Consensus 31 ~R~~~gltq~elA~~~gis~~~is~~E~ 58 (111)
T 3mlf_A 31 LRTDYGLTQKELGDLFKVSSRTIQNMEK 58 (111)
T ss_dssp HHHHTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 3455789999999999999999999876
No 269
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=63.22 E-value=9.8 Score=26.96 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=27.6
Q ss_pred HHHHhhcC-CC--hHhhhhhc-cccHhHHHHHHHHHHHH
Q psy13113 22 VLRFYATG-NF--QIDSEDYH-DISQSTICRLVAKVSEE 56 (286)
Q Consensus 22 ~L~~L~~~-~~--~~~l~~~F-gvs~stv~~~~~~v~~~ 56 (286)
.|..|..| .+ +.+++..+ |+|++|+++.++...+.
T Consensus 32 IL~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~ 70 (111)
T 3df8_A 32 IISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDS 70 (111)
T ss_dssp HHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHC
Confidence 44555555 45 89999999 99999999988876655
No 270
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=62.84 E-value=6.3 Score=27.51 Aligned_cols=27 Identities=7% Similarity=0.043 Sum_probs=23.4
Q ss_pred HhhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 25 FYATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 25 ~L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
+-..|.++.++|...|||++|++++.+
T Consensus 10 r~~~gltq~~lA~~~gis~~~i~~~e~ 36 (111)
T 1b0n_A 10 RKEKGYSLSELAEKAGVAKSYLSSIER 36 (111)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345688999999999999999998875
No 271
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=62.61 E-value=3.2 Score=35.97 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=20.2
Q ss_pred CChHhhhhhccccHhHHHHHHH
Q psy13113 30 NFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 30 ~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
.+.+++|...|||.+|||++++
T Consensus 10 ~Ti~diA~~aGVS~~TVSrvLn 31 (366)
T 3h5t_A 10 GTLASIAAKLGISRTTVSNAYN 31 (366)
T ss_dssp THHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHC
Confidence 4688999999999999999996
No 272
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=62.27 E-value=2.8 Score=35.97 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=20.6
Q ss_pred CChHhhhhhccccHhHHHHHHHH
Q psy13113 30 NFQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 30 ~~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
.+.+++|..+|||.+||+++++.
T Consensus 11 ~ti~diA~~agVS~~TVSr~Ln~ 33 (344)
T 3kjx_A 11 LTLRDVSEASGVSEMTVSRVLRN 33 (344)
T ss_dssp CCHHHHHHHHCCCSHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 47899999999999999998853
No 273
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=62.11 E-value=7.3 Score=30.80 Aligned_cols=25 Identities=8% Similarity=-0.033 Sum_probs=21.5
Q ss_pred hcCCChHhhhhhccccHhHHHHHHH
Q psy13113 27 ATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 27 ~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
....+..++|..+|+|++|+++.++
T Consensus 31 ~~~~s~~eLA~~lglS~stv~~~l~ 55 (192)
T 1uly_A 31 NKEMTISQLSEILGKTPQTIYHHIE 55 (192)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3456999999999999999998775
No 274
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=61.92 E-value=5.7 Score=29.35 Aligned_cols=28 Identities=7% Similarity=0.170 Sum_probs=24.9
Q ss_pred cCCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 28 TGNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 28 ~~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
.|.+...||..||+|..++.+++++.-.
T Consensus 91 ~G~n~~eLArkYgLSer~I~~Ii~~~r~ 118 (129)
T 1rr7_A 91 NGRNVSELTTRYGVTFNTVYKAIRRMRR 118 (129)
T ss_dssp CSSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999987654
No 275
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=61.88 E-value=1.6 Score=34.51 Aligned_cols=35 Identities=17% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 22 VLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 22 ~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
...++..|.+...+|..+|+|.+|++++++..-..
T Consensus 151 i~~l~~~G~s~~~Ia~~l~vs~~T~yr~l~~~~~~ 185 (193)
T 3plo_X 151 AGRLLAQGIPRKQVALIYDVALSTLYKKHPAKRAH 185 (193)
T ss_dssp -----------------------------------
T ss_pred HHHHHHCCCCHHHHHHHHCcCHHHHHHHHhhhHHh
Confidence 34455678999999999999999999998765443
No 276
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=61.64 E-value=6.7 Score=28.40 Aligned_cols=34 Identities=18% Similarity=0.086 Sum_probs=26.3
Q ss_pred HHHHHHHHhh--cCCChHhhhhhccccHhHHHHHHH
Q psy13113 18 KLLAVLRFYA--TGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 18 ~l~~~L~~L~--~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
.+...|..++ .|.++.++|...|||+++++++.+
T Consensus 40 ~lg~~L~~~R~~~glTQ~eLA~~lGis~~~Is~iE~ 75 (120)
T 2o38_A 40 RLAYALNAVIDRARLSQAAAAARLGINQPKVSALRN 75 (120)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3444454444 578999999999999999998765
No 277
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=61.63 E-value=9.2 Score=30.93 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=24.3
Q ss_pred CChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 30 NFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 30 ~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
.++..+|...++|++|+++.+++..+
T Consensus 28 ~s~s~aA~~L~isq~avSr~I~~LE~ 53 (230)
T 3cta_A 28 LTSSKLADMLGISQQSASRIIIDLEK 53 (230)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46999999999999999999999888
No 278
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=60.89 E-value=16 Score=22.86 Aligned_cols=27 Identities=11% Similarity=-0.007 Sum_probs=22.1
Q ss_pred hhcCCChHhhhhhccccHhHHHHHHHH
Q psy13113 26 YATGNFQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 26 L~~~~~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
-.++......|...|||++|+++.+++
T Consensus 29 ~~~~gn~~~aA~~LGisr~tL~rklkk 55 (63)
T 3e7l_A 29 REYDYDLKRTAEEIGIDLSNLYRKIKS 55 (63)
T ss_dssp HHTTTCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 345667888999999999999987764
No 279
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=60.45 E-value=8.2 Score=29.70 Aligned_cols=45 Identities=18% Similarity=0.096 Sum_probs=30.6
Q ss_pred CCCHHH-HHHHHHHHhhc--CCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 12 IHSPVV-KLLAVLRFYAT--GNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 12 ~~~~~~-~l~~~L~~L~~--~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
.+++.+ .++..|+.-.. +.+..+++..++++++|+++.+++....
T Consensus 66 glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~ 113 (181)
T 2fbk_A 66 GLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEK 113 (181)
T ss_dssp TCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 456544 34444433332 2799999999999999999988765543
No 280
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=60.29 E-value=7.2 Score=28.13 Aligned_cols=33 Identities=9% Similarity=0.026 Sum_probs=25.7
Q ss_pred HHHHHHH--hhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 19 LLAVLRF--YATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 19 l~~~L~~--L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
+.-.|.. ...|.++.++|...|||++|++++-+
T Consensus 13 ~g~~lk~~R~~~glsq~~lA~~~gis~~~is~~E~ 47 (126)
T 3ivp_A 13 LGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIEN 47 (126)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 3334444 44688999999999999999998765
No 281
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=60.14 E-value=7.4 Score=31.00 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=24.7
Q ss_pred HHHhhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 23 LRFYATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 23 L~~L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
..++..|.+...+|..+|+|.+|++++++
T Consensus 169 ~~~~~~G~s~~~Ia~~l~is~~tv~r~l~ 197 (209)
T 2r0q_C 169 VEMLEEGQAISKIAKEVNITRQTVYRIKH 197 (209)
T ss_dssp HHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 34456789999999999999999999875
No 282
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=60.08 E-value=16 Score=30.58 Aligned_cols=49 Identities=14% Similarity=0.140 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHhhc
Q psy13113 12 IHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAKCH 61 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~ 61 (286)
.+|+.++-++.|.++ .|.+++++|...|++.+||...+.+....+....
T Consensus 111 ~Lp~~~R~v~~L~~~-eg~s~~EIA~~lgis~~tVks~l~rA~~~Lr~~l 159 (286)
T 3n0r_A 111 RIAPRSRQAFLLTAL-EGFTPTEAAQILDCDFGEVERLIGDAQAEIDAEL 159 (286)
T ss_dssp HHSCHHHHHHHHHHT-TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred hCCHHHeeEEEEEee-CCCCHHHHHHHhCcCHHHHHHHHHHHHhhhhccC
Confidence 356777777777666 5689999999999999999999988888877643
No 283
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=59.45 E-value=14 Score=25.07 Aligned_cols=28 Identities=7% Similarity=0.080 Sum_probs=22.5
Q ss_pred hhcCCChHhhhhhccccHhHHHHHHHHH
Q psy13113 26 YATGNFQIDSEDYHDISQSTICRLVAKV 53 (286)
Q Consensus 26 L~~~~~~~~l~~~Fgvs~stv~~~~~~v 53 (286)
-.++......|...|||++|+++.+++.
T Consensus 61 ~~~~gn~~~aA~~LGIsr~tL~rklkk~ 88 (91)
T 1ntc_A 61 RHTQGHKQEAARLLGWGAATLTAKLKEL 88 (91)
T ss_dssp HHTTTCTTHHHHHTTCCHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 3456677789999999999999887653
No 284
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=59.28 E-value=5.2 Score=28.27 Aligned_cols=26 Identities=4% Similarity=0.046 Sum_probs=22.9
Q ss_pred hhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 26 YATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 26 L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
-..|.++.++|...|+|++|++++.+
T Consensus 21 ~~~glsq~~lA~~~gis~~~is~~e~ 46 (113)
T 2eby_A 21 EPLDLKINELAELLHVHRNSVSALIN 46 (113)
T ss_dssp TTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34678999999999999999999875
No 285
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=59.10 E-value=9.5 Score=30.34 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHH
Q psy13113 11 VIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELA 58 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~ 58 (286)
..++..+. -.|.+|..|.+.++++...++|..||..++.++..-|.
T Consensus 148 ~~LT~rE~--~vL~~l~~g~s~~eIa~~l~is~~TV~~hi~~l~~KL~ 193 (225)
T 3c3w_A 148 SGLTDQER--TLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLG 193 (225)
T ss_dssp TTSCHHHH--HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHH--HHHHHHHCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 45676554 34566889999999999999999999999987776654
No 286
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=58.58 E-value=9 Score=28.48 Aligned_cols=39 Identities=13% Similarity=0.111 Sum_probs=31.2
Q ss_pred HHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 21 AVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 21 ~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
-++..+....++...|...|+|++++++.+++....+..
T Consensus 30 ~~f~av~e~gS~s~AA~~L~iSqsavS~~I~~LE~~lG~ 68 (135)
T 2ijl_A 30 ELMQLIAETGSISAAGRAMDMSYRRAWLLVDALNHMFRQ 68 (135)
T ss_dssp HHHHHHHHHSCHHHHHHHTTCCHHHHHHHHHHHHHHBSS
T ss_pred HHHHHHHHhCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 334444455689999999999999999999998888764
No 287
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=58.44 E-value=7.7 Score=32.24 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHHhhc---CCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 11 VIHSPVVKLLAVLRFYAT---GNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~L~~---~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
..++.-++.+-.|..|+. +.+..+++...|++++|++++++.....
T Consensus 15 ~~v~sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~ 63 (265)
T 2ia2_A 15 DYVQSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVEL 63 (265)
T ss_dssp -CCHHHHHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346666777788888864 3588999999999999999999987654
No 288
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=58.33 E-value=15 Score=29.37 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 16 VVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 16 ~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
.+..+-+++.|....+-+++|...|+|++||+..++...+.
T Consensus 17 ~EdYLk~I~~L~~~V~~~~LA~~LgvS~~SV~~~lkkL~e~ 57 (200)
T 2p8t_A 17 VEDVLAVIFLLKEPLGRKQISERLELGEGSVRTLLRKLSHL 57 (200)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCccHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 45556677777666789999999999999999988776554
No 289
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=58.24 E-value=7.8 Score=28.44 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=19.7
Q ss_pred ChHhhhhhccccHhHHHHHHHHH
Q psy13113 31 FQIDSEDYHDISQSTICRLVAKV 53 (286)
Q Consensus 31 ~~~~l~~~Fgvs~stv~~~~~~v 53 (286)
+-+.||..||||++||.+.+...
T Consensus 30 se~~La~~~gvSr~tVr~Al~~L 52 (129)
T 2ek5_A 30 STNELAAFHRINPATARNGLTLL 52 (129)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 67899999999999999877643
No 290
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=58.07 E-value=15 Score=26.75 Aligned_cols=39 Identities=18% Similarity=0.096 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhh--cCCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 16 VVKLLAVLRFYA--TGNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 16 ~~~l~~~L~~L~--~~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
...+.-++.+|. ...+..++|..+|+|.+++++.|++..
T Consensus 78 ~~~l~~a~~~i~~~~~~sl~~lA~~~g~S~~~f~r~Fk~~~ 118 (133)
T 1u8b_A 78 LDKITHACRLLEQETPVTLEALADQVAMSPFHLHRLFKATT 118 (133)
T ss_dssp HHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456777788886 467899999999999999999998654
No 291
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=58.02 E-value=11 Score=30.30 Aligned_cols=43 Identities=19% Similarity=0.009 Sum_probs=32.9
Q ss_pred CCCCCHHHH-----HHHHHHHhh--cCCChHhhhhhccccHhHHHHHHHH
Q psy13113 10 GVIHSPVVK-----LLAVLRFYA--TGNFQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 10 ~~~~~~~~~-----l~~~L~~L~--~~~~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
...++..++ +.-.|..++ .|.++.++|..+|+|++|++++.+.
T Consensus 4 ~~~lt~~~~~~~~~~~~~l~~~r~~~g~t~~~lA~~~gis~~~i~~~~~g 53 (236)
T 3bdn_A 4 KKPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp SCCCCSHHHHHHHHHHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTTT
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 344666555 666666665 4669999999999999999999874
No 292
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=56.71 E-value=11 Score=30.61 Aligned_cols=51 Identities=8% Similarity=-0.068 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 9 RGVIHSPVVKLLAVLRFYAT----GNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 9 ~~~~~~~~~~l~~~L~~L~~----~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
++..++-+.-|-.++..+.. +.+.+.++...|||++|++++|..--+.+..
T Consensus 2 ~r~~~tr~~Il~AA~~l~~~~G~~~~S~r~IA~~aGvs~~tlY~hF~~K~~Ll~~ 56 (234)
T 2opt_A 2 AMAPLTQDRIVVTALGILDAEGLDALSMRRLAQELKTGHASLYAHVGNRDELLDL 56 (234)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCccccCHHHHHHHHCCChhHHHHHcCCHHHHHHH
Confidence 45667777777777777764 3699999999999999999999765544443
No 293
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=56.44 E-value=14 Score=30.30 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=33.3
Q ss_pred HHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 20 LAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 20 ~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
+-++.-++...++...|...++|++++++.+++..+.|..
T Consensus 8 l~~f~~v~~~gs~t~AA~~L~isq~avS~~i~~LE~~lg~ 47 (306)
T 3hhg_A 8 LTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGV 47 (306)
T ss_dssp HHHHHHHHHSSSHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 3344455566799999999999999999999999999874
No 294
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=55.99 E-value=16 Score=25.31 Aligned_cols=27 Identities=11% Similarity=-0.043 Sum_probs=23.4
Q ss_pred cCCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 28 TGNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 28 ~~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
...+..++|..+|+|.+++++.|++..
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~~ 45 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQL 45 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 346788999999999999999998763
No 295
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=55.65 E-value=20 Score=24.01 Aligned_cols=35 Identities=11% Similarity=0.040 Sum_probs=25.0
Q ss_pred HHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHH
Q psy13113 18 KLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 18 ~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
+-.+.-.+-.++......|...|||++|+++.+++
T Consensus 43 r~~I~~aL~~~~GN~s~AA~~LGISR~TLyrKLkk 77 (81)
T 1umq_A 43 WEHIQRIYEMCDRNVSETARRLNMHRRTLQRILAK 77 (81)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 33333333446677888999999999999987653
No 296
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=55.61 E-value=16 Score=26.42 Aligned_cols=34 Identities=15% Similarity=0.096 Sum_probs=25.2
Q ss_pred HHHHHHHhhc-----CCChHhhhhhccccHhHHHHHHHH
Q psy13113 19 LLAVLRFYAT-----GNFQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 19 l~~~L~~L~~-----~~~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
-+-+|.+|+. ..+-.++|..+|+|++++.+++..
T Consensus 11 al~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~ 49 (129)
T 2y75_A 11 GLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSP 49 (129)
T ss_dssp HHHHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3345566653 247788999999999999987763
No 297
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=55.52 E-value=23 Score=24.20 Aligned_cols=26 Identities=12% Similarity=-0.077 Sum_probs=23.5
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
..+..++|..+|+|.+++++.|++..
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~~ 44 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKNF 44 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 56899999999999999999998873
No 298
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=55.39 E-value=15 Score=28.42 Aligned_cols=33 Identities=15% Similarity=0.065 Sum_probs=25.3
Q ss_pred HHHHHHHhhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 19 LLAVLRFYATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 19 l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
+.--|..++...++.++|..+|+|++|++++.+
T Consensus 10 ~~~rl~~~r~~~tq~elA~~~Gis~~~i~~~e~ 42 (189)
T 2fjr_A 10 VLDRICEAYGFSQKIQLANHFDIASSSLSNRYT 42 (189)
T ss_dssp HHHHHHHHHTCSSHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHhCcCHHHHHHHHh
Confidence 334444444444999999999999999999886
No 299
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=55.20 E-value=2.5 Score=36.03 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=0.0
Q ss_pred ChHhhhhhccccHhHHHHHHHH
Q psy13113 31 FQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 31 ~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
+.+++|...|||.+||+++++.
T Consensus 4 ti~diA~~agVS~~TVSrvln~ 25 (330)
T 3ctp_A 4 NIREIAKRAGISIATVSRHLNN 25 (330)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHcC
Confidence 6789999999999999999986
No 300
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=55.17 E-value=9.1 Score=27.32 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=26.9
Q ss_pred HHHHHHHHhh--cCCChHhhhhhccccHhHHHHHHH
Q psy13113 18 KLLAVLRFYA--TGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 18 ~l~~~L~~L~--~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
.+.-.|..++ .|.++.++|...|||+++++++-+
T Consensus 7 ~lG~~Lr~~R~~~glSq~eLA~~~gis~~~is~iE~ 42 (112)
T 2wus_R 7 ELGETFRKKREERRITLLDASLFTNINPSKLKRIEE 42 (112)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 3444555554 578999999999999999998865
No 301
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=55.08 E-value=4.1 Score=28.39 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=18.6
Q ss_pred ChHhhhhhccccHhHHHHHHH
Q psy13113 31 FQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 31 ~~~~l~~~Fgvs~stv~~~~~ 51 (286)
+.++|+..||||++||++.+.
T Consensus 37 s~~eLa~~~~vSr~tvr~al~ 57 (102)
T 1v4r_A 37 SVADIRAQFGVAAKTVSRALA 57 (102)
T ss_dssp CHHHHHHHSSSCTTHHHHHTT
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 688999999999999998664
No 302
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=55.07 E-value=2.5 Score=36.04 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=0.0
Q ss_pred CChHhhhhhccccHhHHHHHHHH
Q psy13113 30 NFQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 30 ~~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
.+.+++|...|||.+||+++++.
T Consensus 6 ~ti~diA~~agVS~~TVSrvln~ 28 (332)
T 2o20_A 6 TTIYDVARVAGVSMATVSRVVNG 28 (332)
T ss_dssp -----------------------
T ss_pred CcHHHHHHHHCCCHHHHHHHHcC
Confidence 47889999999999999999985
No 303
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=55.06 E-value=9.4 Score=30.34 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=23.1
Q ss_pred hhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 26 YATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 26 L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
...|.++.++|...|+|++|++++.+
T Consensus 40 ~~~gitQ~~lA~~~GiSqs~ISr~l~ 65 (194)
T 1ic8_A 40 QQHNIPQREVVDTTGLNQSHLSQHLN 65 (194)
T ss_dssp HHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCChHHHHHHHh
Confidence 45689999999999999999999954
No 304
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=54.18 E-value=2.7 Score=36.28 Aligned_cols=23 Identities=22% Similarity=0.128 Sum_probs=0.0
Q ss_pred CChHhhhhhccccHhHHHHHHHH
Q psy13113 30 NFQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 30 ~~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
.+.+++|...|||.+||+++++.
T Consensus 9 ~ti~dvA~~aGVS~~TVSrvLn~ 31 (348)
T 3bil_A 9 PTLKDVARQAGVSIATASRALAD 31 (348)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHCC
Confidence 36789999999999999999986
No 305
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=54.02 E-value=13 Score=28.81 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHH
Q psy13113 13 HSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELA 58 (286)
Q Consensus 13 ~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~ 58 (286)
++..++- .|.++..|.+..++|..+++|..||..++.++..-|.
T Consensus 143 Lt~rE~~--vl~~l~~g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~ 186 (208)
T 1yio_A 143 LTGREQQ--VLQLTIRGLMNKQIAGELGIAEVTVKVHRHNIMQKLN 186 (208)
T ss_dssp SCHHHHH--HHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCHHHHH--HHHHHHcCCcHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 4544433 3556788999999999999999999998888777664
No 306
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=53.79 E-value=2.7 Score=35.95 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=0.0
Q ss_pred CChHhhhhhccccHhHHHHHHHH
Q psy13113 30 NFQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 30 ~~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
.+.+++|...|||.+|||++++.
T Consensus 5 ~ti~diA~~agVS~~TVSr~Ln~ 27 (339)
T 3h5o_A 5 VTMHDVAKAAGVSAITVSRVLNQ 27 (339)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 46789999999999999999974
No 307
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=53.61 E-value=17 Score=29.80 Aligned_cols=44 Identities=9% Similarity=0.055 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHH----hhcCC---ChHhhhhhccccHhHHHHHHHHHH
Q psy13113 11 VIHSPVVKLLAVLRF----YATGN---FQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~----L~~~~---~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
...|..+|+.-.|.. +.-|. +-.+|+..||||+.||.+.+....
T Consensus 11 ~~~~~y~~i~~~l~~~I~~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~ 61 (248)
T 3f8m_A 11 PRILKHQVVRAELDRMLDGMRIGDPFPAEREIAEQFEVARETVRQALRELL 61 (248)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456677777766655 55553 668999999999999998776443
No 308
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=53.55 E-value=2.8 Score=35.92 Aligned_cols=23 Identities=9% Similarity=0.120 Sum_probs=0.0
Q ss_pred CChHhhhhhccccHhHHHHHHHH
Q psy13113 30 NFQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 30 ~~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
.+.+++|..+|||.+||+++++.
T Consensus 7 ~ti~diA~~agVS~~TVSr~Ln~ 29 (333)
T 3jvd_A 7 SSLKEVAELAGVGYATASRALSG 29 (333)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 46789999999999999999984
No 309
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=53.21 E-value=14 Score=30.21 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=30.9
Q ss_pred HHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 23 LRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 23 L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
+.-++...++...|...++|++++++.+++..+.|..
T Consensus 9 f~~v~~~gs~s~AA~~L~isq~avS~~i~~LE~~lg~ 45 (294)
T 1ixc_A 9 FIAVAEAGNMAAAAKRLHVSQPPITRQMQALEADLGV 45 (294)
T ss_dssp HHHHHHHSSHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCHHHHHHHhCCCcchHHHHHHHHHHHHCC
Confidence 3334445699999999999999999999999998874
No 310
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=53.11 E-value=2.8 Score=36.08 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=0.0
Q ss_pred CChHhhhhhccccHhHHHHHHHHH
Q psy13113 30 NFQIDSEDYHDISQSTICRLVAKV 53 (286)
Q Consensus 30 ~~~~~l~~~Fgvs~stv~~~~~~v 53 (286)
.+.+++|...|||.+||+++++.-
T Consensus 4 ~ti~diA~~aGVS~~TVSrvLn~~ 27 (349)
T 1jye_A 4 VTLYDVAEYAGVSYQTVSRVVNQA 27 (349)
T ss_dssp ------------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcCC
Confidence 367899999999999999999863
No 311
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=52.76 E-value=2.9 Score=35.72 Aligned_cols=23 Identities=13% Similarity=0.316 Sum_probs=0.0
Q ss_pred CChHhhhhhccccHhHHHHHHHH
Q psy13113 30 NFQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 30 ~~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
.+.+++|...|||.+|||++++.
T Consensus 4 ~ti~diA~~agVS~~TVSrvln~ 26 (338)
T 3dbi_A 4 TTMLEVAKRAGVSKATVSRVLSG 26 (338)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHCC
Confidence 36789999999999999999986
No 312
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=52.73 E-value=9.4 Score=30.96 Aligned_cols=31 Identities=13% Similarity=0.006 Sum_probs=26.5
Q ss_pred HHHHHhhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 21 AVLRFYATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 21 ~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
+--++...|.++.++|..-|||+|+++++.+
T Consensus 36 Ik~~r~~~gltQ~evA~~tGISqS~ISq~e~ 66 (221)
T 2h8r_A 36 IKGYMQQHNIPQREVVDVTGLNQSHLSQHLN 66 (221)
T ss_dssp HHHHHHHHTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHHh
Confidence 3345566899999999999999999999986
No 313
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=52.54 E-value=13 Score=26.16 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=27.8
Q ss_pred HHHHHHHHhhc----CCChHhhhhhccccHhHHHHHHHHH
Q psy13113 18 KLLAVLRFYAT----GNFQIDSEDYHDISQSTICRLVAKV 53 (286)
Q Consensus 18 ~l~~~L~~L~~----~~~~~~l~~~Fgvs~stv~~~~~~v 53 (286)
.+.-++.++.. ..+..++|..+|+|.+++++.|++.
T Consensus 8 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 8 KLTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp HHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34444555554 3588899999999999999999987
No 314
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.46 E-value=48 Score=22.89 Aligned_cols=48 Identities=10% Similarity=0.038 Sum_probs=39.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhcC--CChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 8 ARGVIHSPVVKLLAVLRFYATG--NFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 8 ~~~~~~~~~~~l~~~L~~L~~~--~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
.+-..++.++.+..-+..=+.+ -..++|...-++++.++.++++....
T Consensus 30 ~k~~~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~ 79 (95)
T 2yu3_A 30 GKMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES 79 (95)
T ss_dssp CCCCSCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 4456788899988888877544 68899999999999999999887644
No 315
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=52.06 E-value=14 Score=25.10 Aligned_cols=27 Identities=11% Similarity=0.009 Sum_probs=22.5
Q ss_pred HhhcCCChHhhhhhccccHhH----HHHHHH
Q psy13113 25 FYATGNFQIDSEDYHDISQST----ICRLVA 51 (286)
Q Consensus 25 ~L~~~~~~~~l~~~Fgvs~st----v~~~~~ 51 (286)
+...|.++.++|...|+|.+| +++|-+
T Consensus 10 R~~~glsq~~lA~~~gis~~~~~~~is~~E~ 40 (98)
T 3lfp_A 10 RLRAGISQEKLGVLAGIDEASASARMNQYEK 40 (98)
T ss_dssp HHHHTCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCCCcchhhhHHHHHHC
Confidence 445788999999999999999 777654
No 316
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=51.84 E-value=3.1 Score=35.92 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=0.0
Q ss_pred CChHhhhhhccccHhHHHHHHHH
Q psy13113 30 NFQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 30 ~~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
.+.+++|..+|||.+||+++++.
T Consensus 13 ~ti~diA~~agVS~~TVSr~Ln~ 35 (355)
T 3e3m_A 13 VTMRDVAKAAGVSRMTVSRALKK 35 (355)
T ss_dssp -----------------------
T ss_pred CcHHHHHHHhCCCHHHHHHHHCC
Confidence 36789999999999999999974
No 317
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=51.83 E-value=15 Score=30.24 Aligned_cols=40 Identities=10% Similarity=0.129 Sum_probs=33.0
Q ss_pred HHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 20 LAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 20 ~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
+-++.-++...++...|...++|++++++.+++..+.|..
T Consensus 11 L~~f~~v~~~gs~s~AA~~L~isq~avS~~i~~LE~~lg~ 50 (303)
T 3isp_A 11 LAALAAVVELGSFDAAAERLHVTPSAVSQRIKSLEQQVGQ 50 (303)
T ss_dssp HHHHHHHHHHTCHHHHHTTTTCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCHHHHHHHhCCChHHHHHHHHHHHHHhCC
Confidence 3344445556789999999999999999999999999884
No 318
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=51.58 E-value=17 Score=31.17 Aligned_cols=37 Identities=14% Similarity=0.242 Sum_probs=28.8
Q ss_pred HHHHHHHhhcC--CChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 19 LLAVLRFYATG--NFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 19 l~~~L~~L~~~--~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
..-.|..|..+ .+..+||..||||++|+.+.+....+
T Consensus 7 ~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~ 45 (321)
T 1bia_A 7 PLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRD 45 (321)
T ss_dssp HHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33445556554 58889999999999999999987765
No 319
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=51.26 E-value=22 Score=27.84 Aligned_cols=42 Identities=7% Similarity=0.059 Sum_probs=29.1
Q ss_pred CCHHH-HHHHHHHHhh--cCC--ChHhhhhhcccc-HhHHHHHHHHHH
Q psy13113 13 HSPVV-KLLAVLRFYA--TGN--FQIDSEDYHDIS-QSTICRLVAKVS 54 (286)
Q Consensus 13 ~~~~~-~l~~~L~~L~--~~~--~~~~l~~~Fgvs-~stv~~~~~~v~ 54 (286)
++..+ .++-.|..+. .|. +++++|..+|++ ++|++++.+...
T Consensus 4 lt~~q~~i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~l~ 51 (202)
T 1jhf_A 4 LTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALA 51 (202)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHHHHH
Confidence 44443 3444444432 455 899999999999 999999877543
No 320
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=51.19 E-value=26 Score=26.54 Aligned_cols=39 Identities=8% Similarity=-0.066 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhcC---CChHhhhhhcc-ccHhHHHHHHHHHH
Q psy13113 16 VVKLLAVLRFYATG---NFQIDSEDYHD-ISQSTICRLVAKVS 54 (286)
Q Consensus 16 ~~~l~~~L~~L~~~---~~~~~l~~~Fg-vs~stv~~~~~~v~ 54 (286)
.+++.+.-..|.+. .+..+|...++ +|++||++.++...
T Consensus 29 ~tR~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~ 71 (151)
T 3u1d_A 29 ETRLDVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELV 71 (151)
T ss_dssp HHHHHHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45666666677764 36678888888 99999999776444
No 321
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=50.88 E-value=10 Score=31.44 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHhhc---CCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 14 SPVVKLLAVLRFYAT---GNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 14 ~~~~~l~~~L~~L~~---~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
+.-++.+-.|..|+. +.+..+++...|+++||++++++.....
T Consensus 3 ~sl~Ral~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~ 48 (260)
T 3r4k_A 3 GTVSKALTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEA 48 (260)
T ss_dssp CHHHHHHHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 445667777778874 3589999999999999999999877654
No 322
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=50.60 E-value=20 Score=30.50 Aligned_cols=39 Identities=8% Similarity=0.028 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhcCCChHhhhhh----cc---ccHhHHHHHHHHHHH
Q psy13113 17 VKLLAVLRFYATGNFQIDSEDY----HD---ISQSTICRLVAKVSE 55 (286)
Q Consensus 17 ~~l~~~L~~L~~~~~~~~l~~~----Fg---vs~stv~~~~~~v~~ 55 (286)
+.=.+.+..+..|.+...++.. || +|.+||.++++++.+
T Consensus 10 ~~R~~i~~~~~~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~~~ 55 (345)
T 3hot_A 10 QTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKS 55 (345)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhC
Confidence 3335566777788888776665 56 999999999998754
No 323
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=50.40 E-value=35 Score=23.32 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 17 VKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 17 ~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
+-+.-.|..+..+.+...++...|+|.+++++++....+
T Consensus 8 eIi~~IL~~i~~~~~~t~La~~~~ls~~~~~~~l~~L~~ 46 (95)
T 1r7j_A 8 EIIQAILEACKSGSPKTRIMYGANLSYALTGRYIKMLMD 46 (95)
T ss_dssp HHHHHHHHHHTTCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 345555666666688999999999999999998876654
No 324
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=50.12 E-value=16 Score=28.91 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHH
Q psy13113 13 HSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEEL 57 (286)
Q Consensus 13 ~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l 57 (286)
++..+.- .|.+|..|.+.+++|...++|..||..++.++..-|
T Consensus 160 Lt~rE~~--vL~~l~~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL 202 (225)
T 3klo_A 160 LTKREQQ--IIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKI 202 (225)
T ss_dssp SCHHHHH--HHHHHTTTCCHHHHHHHTTCCHHHHHHHHHHHTTTS
T ss_pred CCHHHHH--HHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 5555443 455578899999999999999999999888765443
No 325
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=49.93 E-value=17 Score=29.46 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=32.3
Q ss_pred HHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 22 VLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 22 ~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
++.-++...++...|...++|++++++.+++..+.+..
T Consensus 8 ~f~~v~~~~s~t~AA~~L~isq~avS~~i~~LE~~lg~ 45 (291)
T 3szp_A 8 LFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNL 45 (291)
T ss_dssp HHHHHHHHSSHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 44445566889999999999999999999999998874
No 326
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=49.66 E-value=17 Score=29.97 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=31.1
Q ss_pred HHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 23 LRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 23 L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
+.-++...++...|...++|+++|++.+++..+.|..
T Consensus 10 f~~v~~~gs~t~AA~~L~isq~avS~~i~~LE~~lg~ 46 (305)
T 3fxq_A 10 LICIEEVGSLRAAAQLLHLSQPALSAAIQQLEDELKA 46 (305)
T ss_dssp HHHHHHHSCHHHHHHHTTCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 3344455689999999999999999999999999874
No 327
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=49.51 E-value=18 Score=28.74 Aligned_cols=25 Identities=8% Similarity=0.060 Sum_probs=21.4
Q ss_pred hcCCChHhhhhhccccHhHHHHHHH
Q psy13113 27 ATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 27 ~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
....+..+++..+|+|++|++..++
T Consensus 26 ~~~~s~~eLa~~l~is~stvs~hLk 50 (202)
T 2p4w_A 26 KRPYFVSELSRELGVGQKAVLEHLR 50 (202)
T ss_dssp HSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4556899999999999999998775
No 328
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=49.15 E-value=11 Score=24.46 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=18.9
Q ss_pred CChHhhhhhccccHhHHHHHHH
Q psy13113 30 NFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 30 ~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
.+..++|..+|||++++++.++
T Consensus 17 LTi~EaAeylgIg~~~l~~L~~ 38 (70)
T 1y6u_A 17 LTIEEASKYFRIGENKLRRLAE 38 (70)
T ss_dssp EEHHHHHHHTCSCHHHHHHHHH
T ss_pred eCHHHHHHHHCcCHHHHHHHHH
Confidence 4678899999999999998764
No 329
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=49.08 E-value=7.5 Score=29.59 Aligned_cols=27 Identities=7% Similarity=0.042 Sum_probs=22.3
Q ss_pred cCCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 28 TGNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 28 ~~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
...+..++|..||+|++||.+.+++..
T Consensus 26 ~~ls~~eLa~~lgvSr~~vr~al~~L~ 52 (163)
T 2gqq_A 26 GRISNVELSKRVGLSPTPCLERVRRLE 52 (163)
T ss_dssp SSCCTTGGGTSSSCCTTTSSSTHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 345899999999999999998776543
No 330
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=48.94 E-value=48 Score=23.62 Aligned_cols=40 Identities=10% Similarity=0.200 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 15 PVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 15 ~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
-+.-++..=.||=.|.+.+.++..+||+++-+++.++++-
T Consensus 46 SekII~ALrdyLV~G~srkeaCe~~gV~~syfS~~L~rL~ 85 (111)
T 3m8j_A 46 SDRVILAMKDYLVSGHSRKDVCEKYQMNNGYFSTTLGRLT 85 (111)
T ss_dssp CHHHHHHHHHHHTTCCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3444444456888999999999999999999998887654
No 331
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=48.31 E-value=8 Score=32.41 Aligned_cols=45 Identities=16% Similarity=0.204 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHhhc---CCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 12 IHSPVVKLLAVLRFYAT---GNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L~~---~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
.++.-++.+-.|..|+. +.+..+++...|+++||+++++......
T Consensus 25 ~v~sl~Ral~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~ 72 (275)
T 3mq0_A 25 TVPALRRAVRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTEL 72 (275)
T ss_dssp GHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45566777888888875 3579999999999999999999877654
No 332
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=48.20 E-value=16 Score=30.16 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=31.4
Q ss_pred HHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 22 VLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 22 ~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
++.-++...++...|...++|+++|++.+++..+.|..
T Consensus 17 ~f~~v~~~gs~s~AA~~L~isq~avS~~I~~LE~~lg~ 54 (310)
T 2esn_A 17 VFDALYRHRNVGTAASELAISASAFSHALGRLRQGLDD 54 (310)
T ss_dssp HHHHHHHHSSHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCHHHHHHHhCCChHHHHHHHHHHHHhhCC
Confidence 33344445689999999999999999999999998874
No 333
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=48.13 E-value=26 Score=24.94 Aligned_cols=40 Identities=20% Similarity=0.300 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhcCCChHhhhhhc--cccHhHHHHHHHHHHHH
Q psy13113 16 VVKLLAVLRFYATGNFQIDSEDYH--DISQSTICRLVAKVSEE 56 (286)
Q Consensus 16 ~~~l~~~L~~L~~~~~~~~l~~~F--gvs~stv~~~~~~v~~~ 56 (286)
..+++-.|.. ....+..++|..+ |+|.++|++.++...+.
T Consensus 15 d~~IL~~L~~-~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~ 56 (111)
T 3b73_A 15 DDRILEIIHE-EGNGSPKELEDRDEIRISKSSVSRRLKKLADH 56 (111)
T ss_dssp HHHHHHHHHH-HSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 4445443322 1357999999999 99999999988766544
No 334
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=47.88 E-value=8.5 Score=33.75 Aligned_cols=36 Identities=8% Similarity=0.168 Sum_probs=29.4
Q ss_pred HHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 19 LLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 19 l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
++-.|+ ....+..+|+...|+|++||++++++.++.
T Consensus 25 il~~l~--~~~~sr~~la~~~gls~~tv~~~v~~L~~~ 60 (380)
T 2hoe_A 25 ILKRIM--KSPVSRVELAEELGLTKTTVGEIAKIFLEK 60 (380)
T ss_dssp SHHHHH--HSCBCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHH--cCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 444443 566799999999999999999999988774
No 335
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=47.63 E-value=18 Score=29.25 Aligned_cols=52 Identities=17% Similarity=-0.003 Sum_probs=37.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhcC----CChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 8 ARGVIHSPVVKLLAVLRFYATG----NFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 8 ~~~~~~~~~~~l~~~L~~L~~~----~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
+++...+-+.-|-.++..+... .+.+.++...|||++|++++|..=-..+..
T Consensus 24 ~~~~~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~a 79 (241)
T 2hxi_A 24 AGRRRWSTEQILDAAAELLLAGDAETFSVRKLAASLGTDSSSLYRHFRNKTELLRA 79 (241)
T ss_dssp ----CCCHHHHHHHHHHHHSSSSCCCCCHHHHHHHTTSCHHHHHHHTSSHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCcCHHHHHHHcCCHHHHHHH
Confidence 4455677777777788777653 599999999999999999998764444433
No 336
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=47.42 E-value=22 Score=31.65 Aligned_cols=28 Identities=11% Similarity=0.227 Sum_probs=25.1
Q ss_pred cCCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 28 TGNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 28 ~~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
...+..+|+...|+|++||++++++..+
T Consensus 52 ~~~sr~ela~~~gls~~tv~~~v~~L~~ 79 (429)
T 1z05_A 52 GPISRIDLSKESELAPASITKITRELID 79 (429)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4569999999999999999999988876
No 337
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=47.22 E-value=4 Score=35.51 Aligned_cols=37 Identities=5% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 19 LLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 19 l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
++..| +...+.++++||..||+|++|+++.+....+.
T Consensus 25 iL~~l-~~~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~~ 61 (345)
T 2o0m_A 25 ILRNI-YWMQPIGRRSLSETMGITERVLRTETDVLKQL 61 (345)
T ss_dssp --------------------------------------
T ss_pred HHHHH-HHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 33344 33457899999999999999999999877543
No 338
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=46.88 E-value=20 Score=25.39 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=21.0
Q ss_pred CCChHhhhhhccccHhHHHHHHHH
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
..+-.+||...|||.+||.|..+.
T Consensus 39 ~~si~elA~~~~vS~aTv~Rf~kk 62 (111)
T 2o3f_A 39 ESTVNEISALANSSDAAVIRLCXS 62 (111)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred hcCHHHHHHHHCCCHHHHHHHHHH
Confidence 578999999999999999987653
No 339
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=46.79 E-value=24 Score=31.07 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=28.3
Q ss_pred HHHHhhc--CCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 22 VLRFYAT--GNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 22 ~L~~L~~--~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
.|..|.. ..+..+|+...|+|++||++++++..+.
T Consensus 21 il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~ 57 (406)
T 1z6r_A 21 VYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEA 57 (406)
T ss_dssp HHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 4444543 4689999999999999999999988774
No 340
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=46.73 E-value=14 Score=26.97 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=23.3
Q ss_pred HhhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 25 FYATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 25 ~L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
+...|.++.++|...|+|+++++++=+
T Consensus 12 R~~~gltq~elA~~~gis~~~is~iE~ 38 (130)
T 3fym_A 12 RERLGMTLTELEQRTGIKREMLVHIEN 38 (130)
T ss_dssp HHHTTCCHHHHHHHHCCCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 445789999999999999999998754
No 341
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=46.68 E-value=13 Score=29.96 Aligned_cols=23 Identities=4% Similarity=0.254 Sum_probs=19.6
Q ss_pred ChHhhhhhccccHhHHHHHHHHH
Q psy13113 31 FQIDSEDYHDISQSTICRLVAKV 53 (286)
Q Consensus 31 ~~~~l~~~Fgvs~stv~~~~~~v 53 (286)
+-.+|+..||||++||.+.+...
T Consensus 33 sE~eLa~~~gVSR~tVReAL~~L 55 (239)
T 1hw1_A 33 AERELSELIGVTRTTLREVLQRL 55 (239)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHH
Confidence 57889999999999999877644
No 342
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=46.60 E-value=27 Score=28.75 Aligned_cols=27 Identities=7% Similarity=0.022 Sum_probs=24.2
Q ss_pred CChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 30 NFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 30 ~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
.+..+|+...+++++|+++++++....
T Consensus 175 ~t~~eLa~~l~i~~~tvt~~v~rLe~~ 201 (250)
T 1p4x_A 175 VLLKDLIETIHHKYPQTVRALNNLKKQ 201 (250)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 689999999999999999999877654
No 343
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=46.39 E-value=21 Score=25.72 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=27.3
Q ss_pred HHHHHHHhhc----CCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 19 LLAVLRFYAT----GNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 19 l~~~L~~L~~----~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
+.-++.++.. ..+..++|..+|+|.+++++.|++..
T Consensus 13 i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~~ 52 (129)
T 1bl0_A 13 IHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKET 52 (129)
T ss_dssp HHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3334444443 46888999999999999999999873
No 344
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=45.98 E-value=20 Score=25.40 Aligned_cols=27 Identities=11% Similarity=-0.128 Sum_probs=23.0
Q ss_pred hcCCChHhhhhhccccHhHHHHHHHHH
Q psy13113 27 ATGNFQIDSEDYHDISQSTICRLVAKV 53 (286)
Q Consensus 27 ~~~~~~~~l~~~Fgvs~stv~~~~~~v 53 (286)
....+..++|..+|+|.+++++.|++.
T Consensus 21 ~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (120)
T 3mkl_A 21 AHEWTLARIASELLMSPSLLKKKLREE 47 (120)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHc
Confidence 345688999999999999999998763
No 345
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=45.73 E-value=7.8 Score=28.26 Aligned_cols=24 Identities=8% Similarity=0.077 Sum_probs=19.5
Q ss_pred ChHhhhhhccccHhHHHHHHHHHH
Q psy13113 31 FQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 31 ~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
+-+.||..||||++||.+.+....
T Consensus 37 s~~~La~~~~vSr~tvr~Al~~L~ 60 (126)
T 3ic7_A 37 SVREYASIVEVNANTVMRSYEYLQ 60 (126)
T ss_dssp CTTTTTTCC-CCSGGGHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 667899999999999998887554
No 346
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=45.64 E-value=24 Score=26.24 Aligned_cols=24 Identities=13% Similarity=-0.046 Sum_probs=18.5
Q ss_pred CCChHhhhhhc-----cccHhHHHHHHHH
Q psy13113 29 GNFQIDSEDYH-----DISQSTICRLVAK 52 (286)
Q Consensus 29 ~~~~~~l~~~F-----gvs~stv~~~~~~ 52 (286)
..+-.++...+ ++|.+||+|.++.
T Consensus 37 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~ 65 (145)
T 2fe3_A 37 HPTADDIYKALEGKFPNMSVATVYNNLRV 65 (145)
T ss_dssp CCCHHHHHHHHGGGCTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCChhhHHHHHHH
Confidence 45777777776 8999999987753
No 347
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=45.61 E-value=16 Score=28.34 Aligned_cols=35 Identities=9% Similarity=0.100 Sum_probs=27.5
Q ss_pred HHHHHHHHHhh--cCCChHhhhhhccccHhHHHHHHH
Q psy13113 17 VKLLAVLRFYA--TGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 17 ~~l~~~L~~L~--~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
..+.-.|..++ .|.++.++|...|+|++|++++-+
T Consensus 10 ~~~~~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~ 46 (192)
T 1y9q_A 10 SQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIER 46 (192)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34455555554 678999999999999999999865
No 348
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=44.60 E-value=19 Score=32.31 Aligned_cols=47 Identities=2% Similarity=-0.099 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHHHHHHhh--cCCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 10 GVIHSPVVKLLAVLRFYA--TGNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 10 ~~~~~~~~~l~~~L~~L~--~~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
...|+..+-..+...+-. .+.+..+|+...+++++|+++++++....
T Consensus 399 ~~~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~ 447 (487)
T 1hsj_A 399 KFNLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDL 447 (487)
T ss_dssp SCCCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTT
T ss_pred hcCCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 345777654333222223 34699999999999999999998876543
No 349
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=44.15 E-value=15 Score=30.14 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=31.2
Q ss_pred HHHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 20 LAVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 20 ~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
+-++.-++...++...|...++|++++++.+++..+.|..
T Consensus 9 l~~f~~v~~~~s~s~AA~~L~isq~avS~~i~~LE~~lg~ 48 (306)
T 3fzv_A 9 LKYFVTTVECGSVAEASRKLYIAQPSISTAVKGLEESFGV 48 (306)
T ss_dssp HHHHHHHHHSSSHHHHHHHHTCCC-CHHHHHHHHHHHC-C
T ss_pred HHHHHHHHHhCCHHHHHHHhCCCchHHHHHHHHHHHHhCC
Confidence 3344445556799999999999999999999999998874
No 350
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=43.94 E-value=13 Score=27.98 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhc----CCChHhhhhhccccHhHHHHHHHHHHHHHHhhc
Q psy13113 16 VVKLLAVLRFYAT----GNFQIDSEDYHDISQSTICRLVAKVSEELAKCH 61 (286)
Q Consensus 16 ~~~l~~~L~~L~~----~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~ 61 (286)
+.-+-.++..+.. +.+.++++..-|||++|++++|..--+.+..+.
T Consensus 12 ~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 61 (195)
T 3ppb_A 12 QAILETALQLFVSQGFHGTSTATIAREAGVATGTLFHHFPSKEQLLEQLF 61 (195)
T ss_dssp HHHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHH
Confidence 3344445555553 358999999999999999999987666665543
No 351
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=43.84 E-value=15 Score=28.09 Aligned_cols=30 Identities=10% Similarity=0.037 Sum_probs=24.3
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHH
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELA 58 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~ 58 (286)
+.+.+++|..-|||++|++++|..=-+.+.
T Consensus 32 ~~t~~~IA~~agvsk~tlY~~F~sKe~L~~ 61 (192)
T 2fq4_A 32 AVTVDKIAERAKVSKATIYKWWPNKAAVVM 61 (192)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred cccHHHHHHHcCCCHHHHHHHCCCHHHHHH
Confidence 469999999999999999998865444443
No 352
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=43.53 E-value=40 Score=25.40 Aligned_cols=34 Identities=15% Similarity=0.179 Sum_probs=24.8
Q ss_pred HHHHHHHHhhc--CCChHhhhhhc-----cccHhHHHHHHH
Q psy13113 18 KLLAVLRFYAT--GNFQIDSEDYH-----DISQSTICRLVA 51 (286)
Q Consensus 18 ~l~~~L~~L~~--~~~~~~l~~~F-----gvs~stv~~~~~ 51 (286)
+....+..+.. -.++.+|+..+ +||++|++|-++
T Consensus 6 R~~~I~~li~~~~~~tq~eL~~~L~~~G~~VtqaTisRDL~ 46 (149)
T 1b4a_A 6 RHIKIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDIK 46 (149)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCccHHHHHHHHHHcCCCcCHHHHHHHHH
Confidence 34444444444 46899999998 999999999665
No 353
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=42.99 E-value=21 Score=28.15 Aligned_cols=53 Identities=13% Similarity=0.043 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHhh----cCCChHhhhhhccccHhHHHHHHHHHHHHHHhhcccc
Q psy13113 12 IHSPVVKLLAVLRFYA----TGNFQIDSEDYHDISQSTICRLVAKVSEELAKCHQQW 64 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L~----~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~~~~ 64 (286)
..+|..-.+.+|+.-+ ...+.++++..+||++.|+.+..+.+.+.+....+.+
T Consensus 138 g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~~v~~~tI~~~~~~l~~~l~~~~p~~ 194 (207)
T 1c9b_A 138 GRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTD 194 (207)
T ss_dssp TCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHHTCCHHHHHHHHHHHGGGHHHHSCSS
T ss_pred CCChHHHHHHHHHHHHHHHCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhChHH
Confidence 3445544444443322 3457889999999999999999998888776654444
No 354
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=42.78 E-value=34 Score=25.36 Aligned_cols=41 Identities=12% Similarity=-0.044 Sum_probs=28.3
Q ss_pred CCCHHHHHHH-HHHHhhcC-----CChHhhhhhccccHhHHHHHHHH
Q psy13113 12 IHSPVVKLLA-VLRFYATG-----NFQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 12 ~~~~~~~l~~-~L~~L~~~-----~~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
.++.....++ +|.+|+.. .+-+++|..+++|..++.+++..
T Consensus 5 ~ls~~~~yAl~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~ 51 (143)
T 3t8r_A 5 KISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGP 51 (143)
T ss_dssp --CHHHHHHHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 4555555554 66677642 36778999999999999887753
No 355
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=42.64 E-value=23 Score=26.90 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhc----CCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 16 VVKLLAVLRFYAT----GNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 16 ~~~l~~~L~~L~~----~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
+.-+-.++..+.. +.+.++++..-|||++|++++|..--+.+..
T Consensus 10 ~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~Ll~~ 57 (195)
T 2dg7_A 10 QRLKRAALELYSEHGYDNVTVTDIAERAGLTRRSYFRYFPDKREVLFG 57 (195)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHHHHCSSTTGGGTT
T ss_pred HHHHHHHHHHHHhcCccccCHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 3444455555553 3588999999999999999998754444443
No 356
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=42.55 E-value=58 Score=20.03 Aligned_cols=23 Identities=9% Similarity=0.057 Sum_probs=19.6
Q ss_pred CChHhhhhhccccHhHHHHHHHH
Q psy13113 30 NFQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 30 ~~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
......|...|||++|+++.+++
T Consensus 34 gn~~~aA~~LGIsr~tL~rklkk 56 (61)
T 1g2h_A 34 PSTRKLAQRLGVSHTAIANKLKQ 56 (61)
T ss_dssp CSHHHHHHHTTSCTHHHHHHHHT
T ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Confidence 67778999999999999987653
No 357
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=42.55 E-value=17 Score=29.74 Aligned_cols=45 Identities=9% Similarity=0.093 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHH-hhc-----C---CChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 11 VIHSPVVKLLAVLRF-YAT-----G---NFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~-L~~-----~---~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
...+..+++.-.|.. ... | .+-++|+..||||+.||.+.+.....
T Consensus 7 ~~~~~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~ 60 (243)
T 2wv0_A 7 SPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVN 60 (243)
T ss_dssp SSSCHHHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 446777777766543 222 2 26789999999999999998876543
No 358
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=42.53 E-value=40 Score=23.29 Aligned_cols=27 Identities=19% Similarity=0.053 Sum_probs=21.8
Q ss_pred hhcCCChHhhhhhccccHhHHHHHHHH
Q psy13113 26 YATGNFQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 26 L~~~~~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
-.++......|...|||++|+++.+++
T Consensus 68 ~~~~gn~~~AA~~LGIsR~TL~rkLkk 94 (98)
T 1eto_A 68 QYTLGNQTRAALMMGINRGTLRKKLKK 94 (98)
T ss_dssp HHTTTCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 346677888999999999999987654
No 359
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=42.37 E-value=17 Score=26.51 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=17.2
Q ss_pred CChHhhhhhc-----cccHhHHHHHHH
Q psy13113 30 NFQIDSEDYH-----DISQSTICRLVA 51 (286)
Q Consensus 30 ~~~~~l~~~F-----gvs~stv~~~~~ 51 (286)
.+-.++...+ ++|.+||+|.++
T Consensus 27 ~sa~ei~~~l~~~~~~is~~TVYR~L~ 53 (131)
T 2o03_A 27 RSAQELHDELRRRGENIGLTTVYRTLQ 53 (131)
T ss_dssp EEHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCHhhHHHHHH
Confidence 4666777666 899999998775
No 360
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=41.92 E-value=19 Score=29.24 Aligned_cols=46 Identities=20% Similarity=0.136 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHHhh------cC---CChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 11 VIHSPVVKLLAVLRFYA------TG---NFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~L~------~~---~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
...+..+++.-.|...= .| .+-++|+..||||+.||.+.+......
T Consensus 6 ~~~~~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~ 60 (236)
T 3edp_A 6 AKKPLFEVIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEE 60 (236)
T ss_dssp -CCCHHHHHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34566777766665432 23 267789999999999999988766543
No 361
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=41.58 E-value=5.5 Score=30.20 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=0.0
Q ss_pred hcCCChHhhhhhccccHhHHHHHHH
Q psy13113 27 ATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 27 ~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
..|.++.++|...|+|++|++++-+
T Consensus 12 ~~gltq~elA~~lgis~~~vs~~e~ 36 (158)
T 2p5t_A 12 THDLTQLEFARIVGISRNSLSRYEN 36 (158)
T ss_dssp -------------------------
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 4578999999999999999999843
No 362
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=41.54 E-value=25 Score=27.65 Aligned_cols=40 Identities=13% Similarity=-0.048 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHhhcCC--ChHhhhhhccccHhHHHHHHH
Q psy13113 12 IHSPVVKLLAVLRFYATGN--FQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L~~~~--~~~~l~~~Fgvs~stv~~~~~ 51 (286)
.+..+++--..|..|..+. +-.+|+..|+||..|+.+=+.
T Consensus 7 ~m~k~eR~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~ 48 (190)
T 4a0z_A 7 KLKKDKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRT 48 (190)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHH
Confidence 4455667777777777664 788999999999999987544
No 363
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=41.31 E-value=34 Score=23.69 Aligned_cols=34 Identities=6% Similarity=0.045 Sum_probs=25.4
Q ss_pred HHHHHHHhhcCCChHhhhh-hccccHhHHHHHHHHH
Q psy13113 19 LLAVLRFYATGNFQIDSED-YHDISQSTICRLVAKV 53 (286)
Q Consensus 19 l~~~L~~L~~~~~~~~l~~-~Fgvs~stv~~~~~~v 53 (286)
++++|..-. +.+..+++. ..++.+||+++-+.-.
T Consensus 21 iL~~L~~~~-~~t~~~Lae~~l~~drstvsrnl~~L 55 (95)
T 1bja_A 21 ILITIAKKD-FITAAEVREVHPDLGNAVVNSNIGVL 55 (95)
T ss_dssp HHHHHHHST-TBCHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHCC-CCCHHHHHHHHhcccHHHHHHHHHHH
Confidence 344444433 679999999 9999999999877643
No 364
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=40.78 E-value=19 Score=29.25 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=19.6
Q ss_pred ChHhhhhhccccHhHHHHHHHHH
Q psy13113 31 FQIDSEDYHDISQSTICRLVAKV 53 (286)
Q Consensus 31 ~~~~l~~~Fgvs~stv~~~~~~v 53 (286)
+-++|+..||||+.||.+.+...
T Consensus 31 se~~La~~~~vSr~tvr~Al~~L 53 (239)
T 3bwg_A 31 VLETLMAQFEVSKSTITKSLELL 53 (239)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHH
Confidence 67889999999999999877643
No 365
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=40.61 E-value=30 Score=22.99 Aligned_cols=36 Identities=8% Similarity=0.066 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhcCCChHhhhhhccccHh-HHHHHHHH
Q psy13113 16 VVKLLAVLRFYATGNFQIDSEDYHDISQS-TICRLVAK 52 (286)
Q Consensus 16 ~~~l~~~L~~L~~~~~~~~l~~~Fgvs~s-tv~~~~~~ 52 (286)
.++++..|...+ +.+..++|..+|++.. +|.+.+..
T Consensus 13 ~~~IL~~Lk~~g-~~ta~eiA~~Lgit~~~aVr~hL~~ 49 (79)
T 1xmk_A 13 KEKICDYLFNVS-DSSALNLAKNIGLTKARDINAVLID 49 (79)
T ss_dssp HHHHHHHHHHTC-CEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CcCHHHHHHHcCCCcHHHHHHHHHH
Confidence 455554443332 4588899999999998 88876653
No 366
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=40.38 E-value=18 Score=28.04 Aligned_cols=34 Identities=6% Similarity=-0.080 Sum_probs=26.7
Q ss_pred HHHHHHHHhh--cCCChHhhhhhccccHhHHHHHHH
Q psy13113 18 KLLAVLRFYA--TGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 18 ~l~~~L~~L~--~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
.+.-.|..++ .|.++.++|...|+|++|++++-+
T Consensus 10 ~~g~~l~~~r~~~g~s~~~la~~~gis~~~ls~~e~ 45 (198)
T 2bnm_A 10 GFAELLKDRREQVKMDHAALASLLGETPETVAAWEN 45 (198)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3444454444 678999999999999999998875
No 367
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=40.22 E-value=13 Score=29.43 Aligned_cols=52 Identities=8% Similarity=-0.002 Sum_probs=36.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 8 ARGVIHSPVVKLLAVLRFYAT----GNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 8 ~~~~~~~~~~~l~~~L~~L~~----~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
.++...+-+.-|-.++..+.. +.+.++++...|||++|++++|..--..+..
T Consensus 20 ~~r~~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~~F~~K~~L~~a 75 (211)
T 3fiw_A 20 QGMTKMNRETVITEALDLLDEVGLDGVSTRRLAKRLGVEQPSLYWYFRTKRDLLTA 75 (211)
T ss_dssp ----CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHTTCSSHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHH
Confidence 445567777777777777764 3599999999999999999988654444443
No 368
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=40.10 E-value=22 Score=25.05 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=20.9
Q ss_pred CCChHhhhhhccccHhHHHHHHHH
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
..+-.+||...|||.+||.|..+.
T Consensus 35 ~~si~elA~~~~vS~aTv~Rf~kk 58 (107)
T 3iwf_A 35 NMTSQEIANQLETSSTSIIRLSKK 58 (107)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HCCHHHHHHHHCCCHHHHHHHHHH
Confidence 478999999999999999987654
No 369
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=39.16 E-value=19 Score=29.42 Aligned_cols=24 Identities=4% Similarity=0.029 Sum_probs=20.7
Q ss_pred cCCChHhhhhhccccHhHHHHHHH
Q psy13113 28 TGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 28 ~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
...+..+++..+|+|++|+++.++
T Consensus 24 g~~s~~ELa~~lglS~stVs~hL~ 47 (232)
T 2qlz_A 24 MECYFSLLSSKVSVSSTAVAKHLK 47 (232)
T ss_dssp TTTCSSSSCTTCCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 446888999999999999998775
No 370
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=39.10 E-value=21 Score=29.72 Aligned_cols=45 Identities=9% Similarity=-0.070 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHHhh------cCC---ChHhhhhhccccHhHHHHHHHHHH
Q psy13113 10 GVIHSPVVKLLAVLRFYA------TGN---FQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 10 ~~~~~~~~~l~~~L~~L~------~~~---~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
....+..+++.-.|...= -|. +-.+|+..||||+.||.+.+....
T Consensus 25 ~~~~~~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~ 78 (272)
T 3eet_A 25 FGEQPAYLRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLM 78 (272)
T ss_dssp --CCCHHHHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345677778777665422 222 678899999999999998776443
No 371
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=39.01 E-value=72 Score=20.14 Aligned_cols=53 Identities=6% Similarity=-0.259 Sum_probs=34.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcC-CChHhhhhhccccHhHHHHHHHHHHHHHH
Q psy13113 6 NDARGVIHSPVVKLLAVLRFYATG-NFQIDSEDYHDISQSTICRLVAKVSEELA 58 (286)
Q Consensus 6 ~~~~~~~~~~~~~l~~~L~~L~~~-~~~~~l~~~Fgvs~stv~~~~~~v~~~l~ 58 (286)
.+.++...+.++.-++.-..-.+| ..|..+|..|+.+..|...+-.++...|.
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence 344566778865555444444566 59999999998645566666666665554
No 372
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=38.94 E-value=29 Score=26.22 Aligned_cols=48 Identities=10% Similarity=0.060 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHhhc----CCChHhhhhhccccHhHHHHHHHHHHHHHHhhc
Q psy13113 14 SPVVKLLAVLRFYAT----GNFQIDSEDYHDISQSTICRLVAKVSEELAKCH 61 (286)
Q Consensus 14 ~~~~~l~~~L~~L~~----~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~ 61 (286)
+..+-|-.++..+.. +.+.+++|..-|||++|++++|..=-+.+..+.
T Consensus 8 ~~~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~av~ 59 (192)
T 2zcm_A 8 MKDKIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIYRKSV 59 (192)
T ss_dssp CHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHHTCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHH
Confidence 334444455555442 469999999999999999999986665555543
No 373
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=38.75 E-value=21 Score=28.36 Aligned_cols=24 Identities=8% Similarity=0.033 Sum_probs=20.0
Q ss_pred ChHhhhhhccccHhHHHHHHHHHH
Q psy13113 31 FQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 31 ~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
+-.+|+..||||+++|.+.+....
T Consensus 37 ~e~~La~~lgVSRtpVREAL~~L~ 60 (218)
T 3sxy_A 37 NVRELSEKLGISFTPVRDALLQLA 60 (218)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667899999999999998776443
No 374
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=38.71 E-value=40 Score=25.64 Aligned_cols=33 Identities=3% Similarity=-0.146 Sum_probs=27.6
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhhc
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKCH 61 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~ 61 (286)
+.+.++++..-|||++|++++|..--+.+..+.
T Consensus 36 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 68 (213)
T 2qtq_A 36 DISLSELSLRSGLNSALVKYYFGNKAGLLKALL 68 (213)
T ss_dssp CCCHHHHHHHHCCCHHHHHHHHSSHHHHHHHHH
T ss_pred cccHHHHHHHhCCChhhHhHhcCCHHHHHHHHH
Confidence 469999999999999999999987666665543
No 375
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=38.42 E-value=28 Score=26.32 Aligned_cols=49 Identities=10% Similarity=-0.052 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHhhc----CCChHhhhhhccccHhHHHHHHHHHHHHHHhhc
Q psy13113 13 HSPVVKLLAVLRFYAT----GNFQIDSEDYHDISQSTICRLVAKVSEELAKCH 61 (286)
Q Consensus 13 ~~~~~~l~~~L~~L~~----~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~ 61 (286)
.+-+.-|-.++..+.. +.+.++++..-|||++|++++|..--..+..+.
T Consensus 8 ~tr~~Il~AA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~a~~ 60 (195)
T 3frq_A 8 KSDDEVLEAATVVLKRCGPIEFTLSGVAKEVGLSRAALIQRFTNRDTLLVRMM 60 (195)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 3344444445555553 468999999999999999999987666655543
No 376
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=38.40 E-value=30 Score=25.32 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=17.9
Q ss_pred CChHhhhhhc-----cccHhHHHHHHHHH
Q psy13113 30 NFQIDSEDYH-----DISQSTICRLVAKV 53 (286)
Q Consensus 30 ~~~~~l~~~F-----gvs~stv~~~~~~v 53 (286)
.+-.++...+ ++|.+||+|.++.+
T Consensus 35 ~sa~ei~~~l~~~~~~is~aTVYR~L~~L 63 (136)
T 1mzb_A 35 MSAEDVYKALMEAGEDVGLATVYRVLTQF 63 (136)
T ss_dssp BCHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhCCCCCHHHHHHHHHHH
Confidence 4666776666 89999999977543
No 377
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=38.25 E-value=21 Score=28.79 Aligned_cols=24 Identities=8% Similarity=0.073 Sum_probs=19.5
Q ss_pred ChHhhhhhccccHhHHHHHHHHHH
Q psy13113 31 FQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 31 ~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
+-++|+..||||+++|.+.+....
T Consensus 30 sE~~La~~lgVSRtpVREAL~~L~ 53 (239)
T 2di3_A 30 SERALSETLGVSRSSLREALRVLE 53 (239)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHH
Confidence 356899999999999998776443
No 378
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=37.63 E-value=39 Score=25.12 Aligned_cols=33 Identities=9% Similarity=-0.115 Sum_probs=26.8
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhhc
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKCH 61 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~ 61 (286)
+.+.++++..-|||++|++++|..=-+.+..+.
T Consensus 30 ~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~ 62 (191)
T 3on4_A 30 AFSFKDIATAINIKTASIHYHFPSKEDLGVAVI 62 (191)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCcchhhhcCCCHHHHHHHHH
Confidence 468999999999999999999986655555543
No 379
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=37.46 E-value=58 Score=21.60 Aligned_cols=39 Identities=8% Similarity=0.007 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHHHHH
Q psy13113 15 PVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLVAKV 53 (286)
Q Consensus 15 ~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v 53 (286)
.+++|+=+|.-.+....-.+++...||.+..|++.+.+.
T Consensus 20 ~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~L 58 (80)
T 2lnb_A 20 LEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRM 58 (80)
T ss_dssp HHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 378999999999898999999999999998888877644
No 380
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=37.39 E-value=21 Score=28.95 Aligned_cols=49 Identities=10% Similarity=-0.074 Sum_probs=36.0
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCChHhhhhhccccHhHHHHHHHHHHHHH
Q psy13113 9 RGVIHSPVVKLLAVLRFYAT----GNFQIDSEDYHDISQSTICRLVAKVSEEL 57 (286)
Q Consensus 9 ~~~~~~~~~~l~~~L~~L~~----~~~~~~l~~~Fgvs~stv~~~~~~v~~~l 57 (286)
.+...+-+.-|-.++..+.. +.+.++++...|||++|++++|..=-+.+
T Consensus 15 ~r~~~tr~~Il~AA~~l~~e~G~~~~S~~~IA~~aGvs~~tlY~hF~sK~~Ll 67 (243)
T 2g7l_A 15 AKPALSRRWIVDTAVALMRAEGLEKVTMRRLAQELDTGPASLYVYVANTAELH 67 (243)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHCSSSCCHHHHHHHTTSCHHHHTTTCCSHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHhcCchhcCHHHHHHHHCCChhHHHHHcCCHHHHH
Confidence 34456777777777776664 46999999999999999998886544333
No 381
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=37.00 E-value=37 Score=28.58 Aligned_cols=48 Identities=17% Similarity=0.059 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCChHhhhhhc-cccHhHHHHHHHHHHHHHH
Q psy13113 11 VIHSPVVKLLAVLRFYATGNFQIDSEDYH-DISQSTICRLVAKVSEELA 58 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~F-gvs~stv~~~~~~v~~~l~ 58 (286)
..+....++++.|.+=-.+.++.+++..| |.+++||...++.+.+.+.
T Consensus 255 ~~~~~~r~i~~~l~r~~~~~s~~~ig~~~g~~~~~tv~~~~~~~~~~~~ 303 (324)
T 1l8q_A 255 KRTSEARKIAMYLCRKVCSASLIEIARAFKRKDHTTVIHAIRSVEEEKK 303 (324)
T ss_dssp SSSHHHHHHHHHHHHHHHCCCHHHHHHHSSCCCSTHHHHHHHHHHHTTC
T ss_pred CccchHHHHHHHHHHHHhCCCHHHHHHHhCCCCchHHHHHHHHHHHHHH
Confidence 34556778877765544578999999999 7899999999988876554
No 382
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=36.91 E-value=25 Score=28.64 Aligned_cols=38 Identities=8% Similarity=0.167 Sum_probs=28.8
Q ss_pred HHHHHHHHhhcC-CChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 18 KLLAVLRFYATG-NFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 18 ~l~~~L~~L~~~-~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
.-+..++.|.+| .+...+|...|++.+||+..+.+..+
T Consensus 166 ~~~~l~~~l~~~~~t~~~la~~~~l~~~~V~~~l~~L~~ 204 (232)
T 2qlz_A 166 QLAILHYLLLNGRATVEELSDRLNLKEREVREKISEMAR 204 (232)
T ss_dssp HHHHHHHHHHSSEEEHHHHHHHHTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCHHHHHHHhCcCHHHHHHHHHHHHh
Confidence 445555556655 58999999999999999988775543
No 383
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=36.65 E-value=24 Score=28.66 Aligned_cols=23 Identities=9% Similarity=0.122 Sum_probs=20.0
Q ss_pred ChHhhhhhccccHhHHHHHHHHH
Q psy13113 31 FQIDSEDYHDISQSTICRLVAKV 53 (286)
Q Consensus 31 ~~~~l~~~Fgvs~stv~~~~~~v 53 (286)
+-.+|+..||||++||.+.+...
T Consensus 51 ~e~~La~~lgVSr~~VReAL~~L 73 (237)
T 3c7j_A 51 RQQELATLFGVSRMPVREALRQL 73 (237)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHH
Confidence 77789999999999999887654
No 384
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=36.51 E-value=51 Score=25.64 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHH----hhcCCChHhhhhhccccHhHHHHHHHHHHHHHH
Q psy13113 13 HSPVVKLLAVLRF----YATGNFQIDSEDYHDISQSTICRLVAKVSEELA 58 (286)
Q Consensus 13 ~~~~~~l~~~L~~----L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~ 58 (286)
-+|..-.+.+|+. ++...+.++++...||++.|+.+..+.+.+.|.
T Consensus 145 r~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 145 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 4454444444433 234568999999999999999999998887764
No 385
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=36.50 E-value=52 Score=28.12 Aligned_cols=40 Identities=13% Similarity=0.124 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhh--cCCChHhhhhhccccHhHHHHHHHHHHHH
Q psy13113 16 VVKLLAVLRFYA--TGNFQIDSEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 16 ~~~l~~~L~~L~--~~~~~~~l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
..+++-.|. .+ ...+-.+||..||||+++|.+.++...+.
T Consensus 5 ~~~iL~~L~-~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~ 46 (323)
T 3rkx_A 5 SQDVLQLLY-KNKPNYISGQSIAESLNISRTAVKKVIDQLKLE 46 (323)
T ss_dssp HHHHHHHHH-HHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-hCCCCccCHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 445544443 23 34688899999999999999999877654
No 386
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=36.08 E-value=22 Score=28.28 Aligned_cols=44 Identities=7% Similarity=0.081 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHHHHH------hhcC--CChHhhhhhccccHhHHHHHHHHH
Q psy13113 10 GVIHSPVVKLLAVLRF------YATG--NFQIDSEDYHDISQSTICRLVAKV 53 (286)
Q Consensus 10 ~~~~~~~~~l~~~L~~------L~~~--~~~~~l~~~Fgvs~stv~~~~~~v 53 (286)
...-+..+++.-.|.. |.-| .+-.+|+..||||+++|.+.+...
T Consensus 12 ~~~~~~~~~v~~~l~~~I~~g~l~pG~~L~E~~La~~lgVSRtpVREAl~~L 63 (222)
T 3ihu_A 12 PADGSASDTVFFGIMSGLELGTFVPGQRLVETDLVAHFGVGRNSVREALQRL 63 (222)
T ss_dssp ----CHHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3445666666665543 2233 267789999999999999877543
No 387
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=36.02 E-value=14 Score=28.16 Aligned_cols=32 Identities=16% Similarity=-0.062 Sum_probs=26.6
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
+.+.++++..-|||++|++++|..=-+.+..+
T Consensus 28 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 59 (206)
T 3dew_A 28 GVSIRELAQAAGASISMISYHFGGKEGLYAAV 59 (206)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHSCHHHHHHHHH
T ss_pred cCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 46999999999999999999998766665553
No 388
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=35.87 E-value=24 Score=27.69 Aligned_cols=49 Identities=10% Similarity=-0.089 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHHhhc--CCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 11 VIHSPVVKLLAVLRFYAT--GNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~L~~--~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
...+-+.-|-.++..+.. +.+.++++...|||++|++++|..=-+.+..
T Consensus 9 ~~~~r~~Il~aA~~l~~~~G~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~~ 59 (213)
T 2g7g_A 9 ARLDRERIAEAALELVDRDGDFRMPDLARHLNVQVSSIYHHAKGRAAVVEL 59 (213)
T ss_dssp --CCHHHHHHHHHHHHHHHSSCCHHHHHHHTTSCHHHHHTTSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCHhHHHHHcCCHHHHHHH
Confidence 345555555555544432 6899999999999999999988755444443
No 389
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=35.76 E-value=14 Score=27.94 Aligned_cols=35 Identities=3% Similarity=-0.074 Sum_probs=28.1
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhhccc
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKCHQQ 63 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~~~ 63 (286)
+.+.++++..-|||++|++++|..--+.+..+...
T Consensus 22 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 56 (194)
T 3bqz_B 22 ATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNI 56 (194)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHTSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCchhHHHhCCCHHHHHHHHHHH
Confidence 46999999999999999999998766666554433
No 390
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=35.49 E-value=44 Score=24.93 Aligned_cols=23 Identities=13% Similarity=0.036 Sum_probs=16.7
Q ss_pred CChHhhhhhc-----cccHhHHHHHHHH
Q psy13113 30 NFQIDSEDYH-----DISQSTICRLVAK 52 (286)
Q Consensus 30 ~~~~~l~~~F-----gvs~stv~~~~~~ 52 (286)
.+-.++.... ++|.+||+|.++.
T Consensus 43 ~sa~ei~~~l~~~~~~is~aTVYR~L~~ 70 (150)
T 2xig_A 43 LSPEEITHSIRQKDKNTSISSVYRILNF 70 (150)
T ss_dssp BCHHHHHHHHHHHSTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCHhhHHHHHHH
Confidence 4666666655 8999999987753
No 391
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=35.38 E-value=25 Score=28.47 Aligned_cols=24 Identities=17% Similarity=0.066 Sum_probs=20.5
Q ss_pred ChHhhhhhccccHhHHHHHHHHHH
Q psy13113 31 FQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 31 ~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
+-.+|+..||||+++|.+.+....
T Consensus 53 ~e~~La~~lgVSRtpVREAL~~L~ 76 (239)
T 2hs5_A 53 SEPDICAALDVSRNTVREAFQILI 76 (239)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677899999999999998887554
No 392
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=35.04 E-value=70 Score=24.17 Aligned_cols=40 Identities=8% Similarity=-0.085 Sum_probs=28.6
Q ss_pred CCCHHHHHHH-HHHHhhc-----CCChHhhhhhccccHhHHHHHHH
Q psy13113 12 IHSPVVKLLA-VLRFYAT-----GNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 12 ~~~~~~~l~~-~L~~L~~-----~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
.+|.....++ +|.+|+. ..+-+++|..+++|...+.+++.
T Consensus 21 ~lS~~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~ 66 (159)
T 3lwf_A 21 KITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIG 66 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred eCchHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 4666655554 4556663 14778899999999998888775
No 393
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=34.58 E-value=39 Score=25.87 Aligned_cols=44 Identities=14% Similarity=0.176 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhh----cCCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 16 VVKLLAVLRFYA----TGNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 16 ~~~l~~~L~~L~----~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
+.-|-.++..+. .+.+.++++..-|||++|++.+|..=-+.+..
T Consensus 14 ~~Il~aA~~lF~~~Gy~~ts~~~IA~~aGvsk~tlY~~F~sKe~L~~a 61 (202)
T 2i10_A 14 QVALQTAMELFWRQGYEGTSITDLTKALGINPPSLYAAFGSKRDLFEK 61 (202)
T ss_dssp HHHHHHHHHHHHHHTTTTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCChHHHHHHhCCHHHHHHH
Confidence 334444444444 24699999999999999999999754444444
No 394
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=34.50 E-value=17 Score=27.97 Aligned_cols=48 Identities=8% Similarity=0.087 Sum_probs=33.3
Q ss_pred HHHHH-HHHHHhhc----CCChHhhhhhccccHhHHHHHHHHHHHHHHhhccc
Q psy13113 16 VVKLL-AVLRFYAT----GNFQIDSEDYHDISQSTICRLVAKVSEELAKCHQQ 63 (286)
Q Consensus 16 ~~~l~-~~L~~L~~----~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~~~ 63 (286)
.++++ .++..+.. +.+.++++..-|||++|++++|..--+.+..+...
T Consensus 33 r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~ 85 (218)
T 3dcf_A 33 RTQIIKVATELFREKGYYATSLDDIADRIGFTKPAIYYYFKSKEDVLFAIVNS 85 (218)
T ss_dssp HHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 34443 44444443 35899999999999999999998766666554433
No 395
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=34.49 E-value=1e+02 Score=22.40 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHHHHHhhc--CCChHhhhhhc--------c--ccHhHHHHHHHHH
Q psy13113 10 GVIHSPVVKLLAVLRFYAT--GNFQIDSEDYH--------D--ISQSTICRLVAKV 53 (286)
Q Consensus 10 ~~~~~~~~~l~~~L~~L~~--~~~~~~l~~~F--------g--vs~stv~~~~~~v 53 (286)
...++.+..- ..+.++.. ..+...++..+ | +|.+||++++++.
T Consensus 88 ~~~~~~~~~~-~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~ 142 (149)
T 1k78_A 88 PKVATPKVVE-KIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTK 142 (149)
T ss_dssp CSSSCHHHHH-HHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC
T ss_pred CCCCCHHHHH-HHHHHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHH
Confidence 3456665332 23334443 35777777766 6 8999999998743
No 396
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=34.48 E-value=14 Score=27.79 Aligned_cols=32 Identities=13% Similarity=0.061 Sum_probs=26.3
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
+.+.++++..-|||++|++++|..--+.+..+
T Consensus 28 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 59 (188)
T 3qkx_A 28 QLSMLKLAKEANVAAGTIYLYFKNKDELLEQF 59 (188)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHSSSHHHHHHHH
T ss_pred cCCHHHHHHHhCCCcchHHHHcCCHHHHHHHH
Confidence 35899999999999999999988666655554
No 397
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=34.11 E-value=23 Score=26.72 Aligned_cols=29 Identities=14% Similarity=0.090 Sum_probs=24.4
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHH
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEEL 57 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l 57 (286)
+.+.++++..-|||++|++++|..=-+.+
T Consensus 23 ~~s~~~IA~~agvsk~t~Y~~F~sK~~L~ 51 (190)
T 3vpr_A 23 ATSVQDLAQALGLSKAALYHHFGSKEEIL 51 (190)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHSSHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 45899999999999999999997555544
No 398
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=34.02 E-value=19 Score=28.22 Aligned_cols=46 Identities=15% Similarity=0.026 Sum_probs=33.6
Q ss_pred HHHHHHHhhc----CCChHhhhhhccccHhHHHHHHHHHHHHHHhhcccc
Q psy13113 19 LLAVLRFYAT----GNFQIDSEDYHDISQSTICRLVAKVSEELAKCHQQW 64 (286)
Q Consensus 19 l~~~L~~L~~----~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~~~~ 64 (286)
|-.++..+.. +.+.++++..-|||++|++++|..--..+..+....
T Consensus 45 l~AA~~lf~e~G~~~~tv~~IA~~AGvs~~tlY~~F~sKe~Ll~av~~~~ 94 (214)
T 2guh_A 45 VDAAGRAFATRPYREITLKDIAEDAGVSAPLIIKYFGSKEQLFDALVDFR 94 (214)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHSSHHHHHHHHTCCH
T ss_pred HHHHHHHHHHcChhhcCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555553 358899999999999999999987766666654443
No 399
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=33.39 E-value=39 Score=27.57 Aligned_cols=38 Identities=11% Similarity=0.073 Sum_probs=31.5
Q ss_pred HHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 22 VLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 22 ~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
++..+....++...|...|+|++++++.++++.+.+-.
T Consensus 27 ~f~~v~~~gs~~~aa~~l~~s~~~~s~~i~~le~~lg~ 64 (265)
T 1b9m_A 27 LLKHIALSGSISQGAKDAGISYKSAWDAINEMNQLSEH 64 (265)
T ss_dssp HHHHHHHHSSHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 34444555689999999999999999999999988874
No 400
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=33.34 E-value=14 Score=28.18 Aligned_cols=35 Identities=9% Similarity=0.061 Sum_probs=28.3
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhhccc
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKCHQQ 63 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~~~ 63 (286)
+.+.+++|..-|||++|++++|..--+.+..+...
T Consensus 32 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 66 (202)
T 3lwj_A 32 NTSIRDIIALSEVGTGTFYNYFVDKEDILKNLLED 66 (202)
T ss_dssp TCCHHHHHHHHCSCHHHHHHHCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCchhHHHHcCCHHHHHHHHHHH
Confidence 46999999999999999999998766666654433
No 401
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=33.33 E-value=17 Score=28.02 Aligned_cols=34 Identities=3% Similarity=-0.087 Sum_probs=27.5
Q ss_pred CChHhhhhhccccHhHHHHHHHHHHHHHHhhccc
Q psy13113 30 NFQIDSEDYHDISQSTICRLVAKVSEELAKCHQQ 63 (286)
Q Consensus 30 ~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~~~ 63 (286)
.+.+++|..-|||++|++++|..=-+.+..+...
T Consensus 38 ~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~ 71 (218)
T 3gzi_A 38 VSIREIASLAGTDPGLIRYYFGSKEKLFSTMIHE 71 (218)
T ss_dssp CCHHHHHHHHTSCTHHHHHHHSSHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 5999999999999999999998766666554433
No 402
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=32.93 E-value=21 Score=27.48 Aligned_cols=32 Identities=13% Similarity=-0.010 Sum_probs=26.4
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
+.+.++++..-|||++|++++|..=-+.+..+
T Consensus 28 ~~s~~~IA~~aGvs~~tiY~~F~sKe~L~~~v 59 (202)
T 2d6y_A 28 GARIDRIAAEARANKQLIYAYYGNKGELFASV 59 (202)
T ss_dssp SCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 46999999999999999999998655555543
No 403
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=32.88 E-value=49 Score=25.10 Aligned_cols=43 Identities=7% Similarity=-0.006 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhc----CCChHhhhhhccccHhHHHHHHHHHHHHHH
Q psy13113 16 VVKLLAVLRFYAT----GNFQIDSEDYHDISQSTICRLVAKVSEELA 58 (286)
Q Consensus 16 ~~~l~~~L~~L~~----~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~ 58 (286)
+.-+-.++..+.. +.+.++++..-|||++|++++|..--+.+.
T Consensus 20 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~Ll~ 66 (207)
T 2rae_A 20 DRISTVGIELFTEQGFDATSVDEVAEASGIARRTLFRYFPSKNAIPW 66 (207)
T ss_dssp HHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHHHHHHHCSSTTTGGG
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcchHhhhCCCHHHHHH
Confidence 3334444444442 468999999999999999999875444433
No 404
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=32.79 E-value=15 Score=27.82 Aligned_cols=34 Identities=15% Similarity=0.068 Sum_probs=27.6
Q ss_pred cCCChHhhhhhccccHhHHHHHHHHHHHHHHhhc
Q psy13113 28 TGNFQIDSEDYHDISQSTICRLVAKVSEELAKCH 61 (286)
Q Consensus 28 ~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~ 61 (286)
.+.+.++++..-|||++|++.+|..=-+.+..+.
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 64 (190)
T 2v57_A 31 PTAALGDIAAAAGVGRSTVHRYYPERTDLLRALA 64 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 5679999999999999999999987655555543
No 405
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=32.67 E-value=15 Score=28.36 Aligned_cols=35 Identities=6% Similarity=0.064 Sum_probs=28.0
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhhccc
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKCHQQ 63 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~~~ 63 (286)
+.+.++++..-|||++|++++|..--+.+..+...
T Consensus 34 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~ 68 (220)
T 3lhq_A 34 ATSLAEIANAAGVTRGAIYWHFKNKSDLFSEIWEL 68 (220)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCceeehhhcCCHHHHHHHHHHH
Confidence 35899999999999999999998766666554433
No 406
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=32.64 E-value=1.2e+02 Score=22.18 Aligned_cols=16 Identities=0% Similarity=0.094 Sum_probs=12.9
Q ss_pred eeeecCCCccEEEecc
Q psy13113 121 VQVIGGPNLEIYDVVA 136 (286)
Q Consensus 121 ~q~vvd~~g~i~~~~~ 136 (286)
.+++|..-|++..+..
T Consensus 89 ~HliC~~Cg~v~~~~~ 104 (145)
T 3eyy_A 89 IHLVCRDCTNVIEADL 104 (145)
T ss_dssp EEEEESSSSCEEEECG
T ss_pred eEEEECCCCCEEEecC
Confidence 5688999999988854
No 407
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=32.28 E-value=17 Score=28.17 Aligned_cols=42 Identities=10% Similarity=0.082 Sum_probs=31.1
Q ss_pred HHHHHHHhhc----CCChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 19 LLAVLRFYAT----GNFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 19 l~~~L~~L~~----~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
|-.++..+.. +.+.++++..-|||++|++++|..--+.+..+
T Consensus 34 l~aa~~lf~~~G~~~~tv~~IA~~agvs~~t~Y~~F~sK~~Ll~~~ 79 (215)
T 2qko_A 34 VNAAIEVLAREGARGLTFRAVDVEANVPKGTASNYFPSRDDLFDQV 79 (215)
T ss_dssp HHHHHHHHHHTCTTTCCHHHHHHHSSSTTTCHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHHHhChhhccHHHHHHHcCCCcchHHHhCCCHHHHHHHH
Confidence 4445555543 35999999999999999999998766655554
No 408
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=32.27 E-value=31 Score=25.36 Aligned_cols=31 Identities=13% Similarity=-0.019 Sum_probs=25.6
Q ss_pred CChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 30 NFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 30 ~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
.+.++++..-|||++|++++|..=-+.+..+
T Consensus 25 ~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 55 (170)
T 3egq_A 25 VSIEEIAREAKVSKSLIFYHFESKQKLLEEA 55 (170)
T ss_dssp CCHHHHHHHHTSCHHHHHHHCSSHHHHHHHH
T ss_pred CcHHHHHHHhCCCchhHHHHcCCHHHHHHHH
Confidence 5889999999999999999998665555543
No 409
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=32.12 E-value=21 Score=26.84 Aligned_cols=32 Identities=13% Similarity=0.075 Sum_probs=26.0
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
+.+.++++..-|||++|++++|..--+.+..+
T Consensus 30 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 61 (196)
T 3col_A 30 GVSTTKVAKRVGIAQSNVYLYFKNKQALIDSV 61 (196)
T ss_dssp GCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHH
T ss_pred cCCHHHHHHHhCCcHHHHHHHhCCHHHHHHHH
Confidence 46899999999999999999887665555543
No 410
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=31.88 E-value=18 Score=27.22 Aligned_cols=32 Identities=3% Similarity=-0.063 Sum_probs=26.3
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
+.+.+++|..-|||++|++++|..=-+.+..+
T Consensus 27 ~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~ 58 (186)
T 2jj7_A 27 GTSIQEIAKEAKVNVAMASYYFNGKENLYYEV 58 (186)
T ss_dssp HCCHHHHHHHHTSCHHHHHHHHSSHHHHHHHH
T ss_pred cCCHHHHHHHhCCChhhhhhhcCCHHHHHHHH
Confidence 36999999999999999999998655555543
No 411
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=31.63 E-value=96 Score=19.39 Aligned_cols=51 Identities=6% Similarity=-0.128 Sum_probs=30.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcC-CChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 5 SNDARGVIHSPVVKLLAVLRFYATG-NFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 5 ~~~~~~~~~~~~~~l~~~L~~L~~~-~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
.+..++...++|+.-++.-..-.+| ..|..++..++....|-..+-.+...
T Consensus 6 ~~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~n 57 (64)
T 3sjm_A 6 TNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRT 57 (64)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHH
Confidence 3445677788875555544445566 48999999876555555555555543
No 412
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=31.34 E-value=19 Score=27.89 Aligned_cols=31 Identities=10% Similarity=0.013 Sum_probs=25.7
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
+.+.++++..-|||++|++++|..=-+.+..
T Consensus 35 ~~s~~~IA~~agvs~~t~Y~~F~sKe~L~~~ 65 (221)
T 3c2b_A 35 ALTTSGLARAANCSKESLYKWFGDRDGLLAA 65 (221)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHHSSHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHhCCCHHHHHHH
Confidence 4699999999999999999999865555544
No 413
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=31.28 E-value=96 Score=26.01 Aligned_cols=45 Identities=9% Similarity=0.075 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhcCC----ChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 15 PVVKLLAVLRFYATGN----FQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 15 ~~~~l~~~L~~L~~~~----~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
--++|.-.+.||-... +...++..|++++||+++=+.-+-+.+..
T Consensus 5 r~~rl~~~~~~l~~~~~~~~~l~~~~~~~~~aks~~s~D~~~~~~~~~~ 53 (291)
T 1o57_A 5 RSGRLVDLTNYLLTHPHELIPLTFFSERYESAKSSISEDLTIIKQTFEQ 53 (291)
T ss_dssp HHHHHHHHHHHHHTSTTCCBCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCCceEeHHHHHHHhccchhhhhhhHHHHHHHHHh
Confidence 3466666666666543 68889999999999999888776677665
No 414
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=31.12 E-value=15 Score=29.61 Aligned_cols=52 Identities=15% Similarity=-0.007 Sum_probs=35.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 8 ARGVIHSPVVKLLAVLRFYAT----GNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 8 ~~~~~~~~~~~l~~~L~~L~~----~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
+++...+-+.-|-.++..+.. +.+.++++...|||++|++++|..--+.+..
T Consensus 11 ~~~~~~~r~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~~ 66 (237)
T 2hxo_A 11 RRQEPLSRERIVGAAVELLDTVGERGLTFRALAERLATGPGAIYWHITGKAELLGA 66 (237)
T ss_dssp -----CCHHHHHHHHHHHHHHTTTTTCCHHHHHHHHTSCGGGGGGTCCCHHHHHHH
T ss_pred CCCCccCHHHHHHHHHHHHHhcCcccCCHHHHHHHHCCChHHHHHhcCCHHHHHHH
Confidence 445556777777777777764 3599999999999999999887654444433
No 415
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=30.77 E-value=16 Score=27.45 Aligned_cols=35 Identities=17% Similarity=0.072 Sum_probs=28.1
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhhccc
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKCHQQ 63 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~~~ 63 (286)
+.+.++++..-|||++|++++|..--+.+..+...
T Consensus 28 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 62 (194)
T 2g7s_A 28 SFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQ 62 (194)
T ss_dssp GCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCchHHHHHcCCHHHHHHHHHHH
Confidence 46999999999999999999998766666554333
No 416
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=30.62 E-value=17 Score=27.64 Aligned_cols=33 Identities=12% Similarity=-0.056 Sum_probs=26.7
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhhc
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKCH 61 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~ 61 (286)
+.+.++++..-|||++|++++|..--..+....
T Consensus 24 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 56 (185)
T 2yve_A 24 TLSYDSLAEATGLSKSGLIYHFPSRHALLLGMH 56 (185)
T ss_dssp TCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHH
T ss_pred hccHHHHHHHhCCChHHHHHhCcCHHHHHHHHH
Confidence 358999999999999999999987655555443
No 417
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=30.52 E-value=18 Score=27.78 Aligned_cols=32 Identities=6% Similarity=0.044 Sum_probs=26.5
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
+.+.++++..-|||++|++++|..--+.+..+
T Consensus 38 ~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 69 (212)
T 1pb6_A 38 GTRLEQIAELAGVSKTNLLYYFPSKEALYIAV 69 (212)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHSSSHHHHHHHH
T ss_pred hhhHHHHHHHHCCChhHHHHhCCCHHHHHHHH
Confidence 46899999999999999999998766555554
No 418
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=30.39 E-value=15 Score=27.97 Aligned_cols=32 Identities=9% Similarity=0.061 Sum_probs=26.2
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
+.+.++++..-|||++|++++|..--+.+..+
T Consensus 37 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 68 (208)
T 3cwr_A 37 AMTMEGVASEAGIAKKTLYRFASGRADLIGLL 68 (208)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred hccHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 46999999999999999999998655555543
No 419
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=30.30 E-value=54 Score=24.29 Aligned_cols=33 Identities=6% Similarity=0.059 Sum_probs=24.2
Q ss_pred HHHHHHhhc--C--CChHhhhhhccccHhHHHHHHHH
Q psy13113 20 LAVLRFYAT--G--NFQIDSEDYHDISQSTICRLVAK 52 (286)
Q Consensus 20 ~~~L~~L~~--~--~~~~~l~~~Fgvs~stv~~~~~~ 52 (286)
+-+|.+|+. + .+-+++|..+++|.+++.+++..
T Consensus 17 l~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~ 53 (149)
T 1ylf_A 17 VHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSY 53 (149)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 335556663 2 47788999999999999887753
No 420
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, strept coelicolor, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=30.21 E-value=32 Score=26.97 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHhhc----CCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 14 SPVVKLLAVLRFYAT----GNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 14 ~~~~~l~~~L~~L~~----~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
+-+.-+-.++..+.. +.+.+.++...|||++|++++|..--+.+..
T Consensus 3 tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~hf~~K~~Ll~~ 52 (209)
T 3bqy_A 3 DRARTVQTALDLLNESGLDTLTMRRLAQAMDVQAGALYRYFAAKQDLLTA 52 (209)
T ss_dssp CHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCcchHHhhcCCHHHHHHH
Confidence 344445555555553 3699999999999999999998764444443
No 421
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=30.16 E-value=16 Score=27.68 Aligned_cols=33 Identities=12% Similarity=0.023 Sum_probs=27.3
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhhc
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKCH 61 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~ 61 (286)
+.+.++++..-|||++|++++|..--+.+..+.
T Consensus 34 ~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~ 66 (191)
T 4aci_A 34 GATVRRLEEATGKSRGAIFHHFGDKENLFLALA 66 (191)
T ss_dssp HCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHH
T ss_pred cCCHHHHHHHHCCCchHHHHHCCCHHHHHHHHH
Confidence 368999999999999999999987666665543
No 422
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=29.97 E-value=17 Score=27.68 Aligned_cols=32 Identities=9% Similarity=0.106 Sum_probs=26.6
Q ss_pred CChHhhhhhccccHhHHHHHHHHHHHHHHhhc
Q psy13113 30 NFQIDSEDYHDISQSTICRLVAKVSEELAKCH 61 (286)
Q Consensus 30 ~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~ 61 (286)
.+.++++..-|||++|++.+|..--+.+..+.
T Consensus 38 ~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 69 (206)
T 3kz9_A 38 GGHADIAEIAQVSVATVFNYFPTREDLVDEVL 69 (206)
T ss_dssp CCHHHHHHHHTSCHHHHHHHCCSHHHHHHHHH
T ss_pred ccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 58999999999999999999987666665543
No 423
>1fc3_A SPO0A; response regulator, signaling protein; 2.00A {Geobacillus stearothermophilus} SCOP: a.4.6.3 PDB: 1lq1_A
Probab=29.96 E-value=52 Score=23.77 Aligned_cols=32 Identities=13% Similarity=-0.016 Sum_probs=28.0
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
-.=|..+|..|+.+.+.|.+.++..++..+..
T Consensus 48 K~LYp~IA~k~~TT~s~VEraIR~aIe~aw~~ 79 (120)
T 1fc3_A 48 KVLYPDIAKKYNTTASRVERAIRHAIEVAWSR 79 (120)
T ss_dssp TTHHHHHHHHHTSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHC
Confidence 34577899999999999999999999998864
No 424
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=29.94 E-value=18 Score=27.53 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=27.1
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhhc
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKCH 61 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~ 61 (286)
+.+.++++..-|||++|++++|..--+.+..+.
T Consensus 34 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 66 (203)
T 3f1b_A 34 ETSMDAIAAKAEISKPMLYLYYGSKDELFAACI 66 (203)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHCCSHHHHHHHHH
T ss_pred cccHHHHHHHhCCchHHHHHHhCCHHHHHHHHH
Confidence 469999999999999999999976666665543
No 425
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=29.90 E-value=17 Score=27.86 Aligned_cols=33 Identities=3% Similarity=-0.108 Sum_probs=27.0
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhhc
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKCH 61 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~ 61 (286)
+.+.++++..-|||++|++++|..--+.+..+.
T Consensus 34 ~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~ 66 (212)
T 3knw_A 34 GVGLQEILKTSGVPKGSFYHYFESKEAFGCELL 66 (212)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred cCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHH
Confidence 468999999999999999999986666555543
No 426
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=29.64 E-value=23 Score=27.42 Aligned_cols=33 Identities=3% Similarity=-0.102 Sum_probs=27.5
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhhc
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKCH 61 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~ 61 (286)
+.+.++++..-|||++|++.+|..=-+.+..+.
T Consensus 39 ~~s~~~IA~~aGvs~~tlY~~F~sK~~L~~a~~ 71 (215)
T 2hku_A 39 GVPITQICAAAGAHPNQVTYYYGSKERLFVEVA 71 (215)
T ss_dssp TSCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHH
T ss_pred CcCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 579999999999999999999987666665543
No 427
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=29.37 E-value=56 Score=25.21 Aligned_cols=34 Identities=9% Similarity=0.121 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhc-CCChHhhhhhcc-ccHhHHHHHHH
Q psy13113 17 VKLLAVLRFYAT-GNFQIDSEDYHD-ISQSTICRLVA 51 (286)
Q Consensus 17 ~~l~~~L~~L~~-~~~~~~l~~~Fg-vs~stv~~~~~ 51 (286)
.++-| |..|.. ..+-.+++..+| +|++|++..++
T Consensus 24 ~Rl~i-l~~L~~~~~~~~~l~~~l~~~~~~~~s~Hl~ 59 (182)
T 4g6q_A 24 LRWRI-TQLLIGRSLTTRELAELLPDVATTTLYRQVG 59 (182)
T ss_dssp HHHHH-HHHTTTSCEEHHHHHHHCTTBCHHHHHHHHH
T ss_pred HHHHH-HHHHHhCCCCHHHHHHHhcCCCHHHHHHHHH
Confidence 34443 334444 457788999996 99999998765
No 428
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=29.20 E-value=20 Score=26.83 Aligned_cols=32 Identities=9% Similarity=0.051 Sum_probs=25.9
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
+.+.++++..-|||++|++.+|..=-+.+..+
T Consensus 22 ~~s~~~Ia~~agvskgtlY~~F~sKe~L~~~~ 53 (179)
T 2eh3_A 22 GTSVEEIVKRANLSKGAFYFHFKSKEELITEI 53 (179)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred cCCHHHHHHHhCCCcHHHHHHcCCHHHHHHHH
Confidence 46999999999999999999997655555443
No 429
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=28.79 E-value=16 Score=28.25 Aligned_cols=32 Identities=6% Similarity=-0.095 Sum_probs=26.2
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
+.+.+++|..-|||++|++++|..--+.+..+
T Consensus 43 ~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~ 74 (214)
T 2zb9_A 43 QLTFERVARVSGVSKTTLYKWWPSKGALALDG 74 (214)
T ss_dssp GCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHH
T ss_pred cCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHH
Confidence 46999999999999999999998665555543
No 430
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=28.65 E-value=15 Score=27.97 Aligned_cols=34 Identities=3% Similarity=-0.027 Sum_probs=27.6
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhhcc
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKCHQ 62 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~~ 62 (286)
+.+.++++..-|||++|++.+|..--+.+..+..
T Consensus 29 ~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~ 62 (193)
T 2dg8_A 29 RVSHRRIAQRAGVPLGSMTYHFTGIEQLLREAFG 62 (193)
T ss_dssp GCCHHHHHHHHTSCTHHHHHHCSSHHHHHHHHHH
T ss_pred hccHHHHHHHhCCCchhhheeCCCHHHHHHHHHH
Confidence 4699999999999999999999876666655433
No 431
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=28.60 E-value=21 Score=27.20 Aligned_cols=32 Identities=6% Similarity=0.050 Sum_probs=26.0
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
+.+.+++|..-|||++|++++|..--+.+..+
T Consensus 32 ~~ti~~Ia~~agvs~~t~Y~~F~~K~~L~~~~ 63 (189)
T 3vp5_A 32 EAKIMHIVKALDIPRGSFYQYFEDLKDAYFYV 63 (189)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred cccHHHHHHHhCCChHHHHHHCCCHHHHHHHH
Confidence 35899999999999999999987666555543
No 432
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription, simocyclinone regulator, TETR-family; 1.95A {Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Probab=28.49 E-value=29 Score=28.62 Aligned_cols=43 Identities=9% Similarity=-0.079 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHhhc----CCChHhhhhhccccHhHHHHHHHHHH
Q psy13113 12 IHSPVVKLLAVLRFYAT----GNFQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L~~----~~~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
.++.+.-|-.++..+.. +.+.++++...|||++|++++|..=-
T Consensus 26 ~~tr~~Il~AA~~L~~e~G~~~~Smr~IA~~aGVs~~tlY~hF~~K~ 72 (267)
T 2y2z_A 26 TLSRDQIVRAAVKVADTEGVEAASMRRVAAELGAGTMSLYYYVPTKE 72 (267)
T ss_dssp EECHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHTTCCSHH
T ss_pred cccHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 56777777777777764 35999999999999999998876433
No 433
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=28.46 E-value=25 Score=27.62 Aligned_cols=47 Identities=11% Similarity=-0.021 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHhhc----CCChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 14 SPVVKLLAVLRFYAT----GNFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 14 ~~~~~l~~~L~~L~~----~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
.-+.-|-.++..+.. +.+.+++|..-|||++|++++|..=-+.+..+
T Consensus 31 ~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F~sK~~L~~a~ 81 (226)
T 2pz9_A 31 TRQRIVAAAKEEFARHGIAGARVDRIAKQARTSKERVYAYFRSKEALYAHV 81 (226)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTSCHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCcHHHHHHHHCCChHHHHHHcCCHHHHHHHH
Confidence 334445555555543 46999999999999999999997655555543
No 434
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=28.19 E-value=35 Score=27.24 Aligned_cols=47 Identities=11% Similarity=-0.056 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHhhc----CCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 13 HSPVVKLLAVLRFYAT----GNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 13 ~~~~~~l~~~L~~L~~----~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
-.-+.-|-.++..+.. +.+.++++..-|||++|++++|..=-..+..
T Consensus 18 ~~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~~F~sKe~Ll~a 68 (251)
T 3npi_A 18 VSTDTVLDIALSLFSELGFSDAKLEAIAKKSGMSKRMIHYHFGDKRGLYIC 68 (251)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccccCHHHHHHHHCCCHHHHHHHcCCHHHHHHH
Confidence 3444444455555543 4699999999999999999999755554443
No 435
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=28.13 E-value=44 Score=25.93 Aligned_cols=46 Identities=9% Similarity=0.060 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHhhcC----CChHhhhhhcc---ccHhHHHHHHHHHHHHHH
Q psy13113 11 VIHSPVVKLLAVLRFYATG----NFQIDSEDYHD---ISQSTICRLVAKVSEELA 58 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~L~~~----~~~~~l~~~Fg---vs~stv~~~~~~v~~~l~ 58 (286)
..++..+.= .|.+|..| .+..+++...+ +|..||..++.++..-|.
T Consensus 144 ~~Lt~rE~~--vl~~l~~~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~ 196 (220)
T 1p2f_A 144 IHLPKKEFE--ILLFLAENAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIE 196 (220)
T ss_dssp CCCCHHHHH--HHHHHHHTTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHC
T ss_pred EecCHHHHH--HHHHHHHCCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHh
Confidence 347776543 35566666 79999999998 999999999887777664
No 436
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=28.00 E-value=22 Score=27.31 Aligned_cols=34 Identities=6% Similarity=-0.028 Sum_probs=27.3
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhhcc
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKCHQ 62 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~~ 62 (286)
+.+.++++..-|||++|++++|..=-..+..+..
T Consensus 30 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 63 (216)
T 3s5r_A 30 ATTMAEIAASVGVNPAMIHYYFKTRDSLLDTIIE 63 (216)
T ss_dssp TCCHHHHHHTTTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred cCCHHHHHHHHCCCHHHHHHHcCCHHHHHHHHHH
Confidence 3599999999999999999999866666555433
No 437
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=27.90 E-value=20 Score=27.49 Aligned_cols=33 Identities=9% Similarity=0.027 Sum_probs=26.4
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhhc
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKCH 61 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~ 61 (286)
+.+.+++|..-|||++|++++|..=-+.+..+.
T Consensus 32 ~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~ 64 (196)
T 2qwt_A 32 GVPMDEIARRAGVGAGTVYRHFPTKQALVVAVA 64 (196)
T ss_dssp TSCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHH
Confidence 468899999999999999999876555555443
No 438
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=27.80 E-value=21 Score=26.76 Aligned_cols=48 Identities=2% Similarity=-0.097 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHhhc----CCChHhhhhhccccHhHHHHHHHHHHHHHHhhc
Q psy13113 14 SPVVKLLAVLRFYAT----GNFQIDSEDYHDISQSTICRLVAKVSEELAKCH 61 (286)
Q Consensus 14 ~~~~~l~~~L~~L~~----~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~ 61 (286)
.-+.-+-.++..+.. +.+.++++..-|||++|++++|..--+.+..+.
T Consensus 9 ~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 60 (183)
T 1zk8_A 9 TLQKIVETAAEIADANGVQEVTLASLAQTLGVRSPSLYNHVKGLQDVRKNLG 60 (183)
T ss_dssp CHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccccCHHHHHHHcCCCchHHHHHcCCHHHHHHHHH
Confidence 334444445555543 369999999999999999998876655555543
No 439
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=27.79 E-value=13 Score=31.27 Aligned_cols=38 Identities=16% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 22 VLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 22 ~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
++....+|.++...|...++|++++++.+++..+.|..
T Consensus 9 F~~v~~~gls~s~AA~~L~isq~avS~~I~~LE~~lg~ 46 (324)
T 1al3_A 9 IVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGI 46 (324)
T ss_dssp --------------------------------------
T ss_pred HHHHHHcccCHHHHHHHhCCCchHHHHHHHHHHHHhCC
Confidence 33333343399999999999999999999999887763
No 440
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.67 E-value=42 Score=25.01 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=16.7
Q ss_pred CChHhhhhhc-----cccHhHHHHHHHH
Q psy13113 30 NFQIDSEDYH-----DISQSTICRLVAK 52 (286)
Q Consensus 30 ~~~~~l~~~F-----gvs~stv~~~~~~ 52 (286)
.+-.++.... ++|.+||+|.+..
T Consensus 34 ~sa~ei~~~l~~~~~~is~aTVYR~L~~ 61 (150)
T 2w57_A 34 ISAEELYKKLIDLGEEIGLATVYRVLNQ 61 (150)
T ss_dssp EEHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4566666655 8999999987753
No 441
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=27.52 E-value=20 Score=27.75 Aligned_cols=44 Identities=5% Similarity=-0.103 Sum_probs=31.7
Q ss_pred HHHHHHHhhc----CCChHhhhhhccccHhHHHHHHHHHHHHHHhhcc
Q psy13113 19 LLAVLRFYAT----GNFQIDSEDYHDISQSTICRLVAKVSEELAKCHQ 62 (286)
Q Consensus 19 l~~~L~~L~~----~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~~ 62 (286)
|-.++..+.. +.+.++++..-|||++|++++|..--+.+..+..
T Consensus 36 l~aA~~l~~~~G~~~~t~~~IA~~aGvs~~t~Y~~F~sK~~L~~~~~~ 83 (222)
T 3bru_A 36 IRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYHYFRNKADFGLALIE 83 (222)
T ss_dssp HHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCcHHHHHHHhCCCcchhhhhCCCHHHHHHHHHH
Confidence 4444444443 3589999999999999999999876665555433
No 442
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=27.52 E-value=96 Score=19.20 Aligned_cols=31 Identities=6% Similarity=0.146 Sum_probs=21.9
Q ss_pred HHHhhcCC---ChHhhhhhccccHhHHHHHHHHH
Q psy13113 23 LRFYATGN---FQIDSEDYHDISQSTICRLVAKV 53 (286)
Q Consensus 23 L~~L~~~~---~~~~l~~~Fgvs~stv~~~~~~v 53 (286)
|-|+++.. .-+..+..|||++..|...+++.
T Consensus 16 L~yIr~sGGildI~~~a~kygV~kdeV~~~LrrL 49 (59)
T 2xvc_A 16 LDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEAL 49 (59)
T ss_dssp HHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHH
Confidence 45566554 44567778999998888777654
No 443
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=27.49 E-value=61 Score=22.48 Aligned_cols=37 Identities=16% Similarity=0.292 Sum_probs=23.6
Q ss_pred HHHHHHhhcCC-ChHh----hhhhccccHhHHHHHHHHHHHH
Q psy13113 20 LAVLRFYATGN-FQID----SEDYHDISQSTICRLVAKVSEE 56 (286)
Q Consensus 20 ~~~L~~L~~~~-~~~~----l~~~Fgvs~stv~~~~~~v~~~ 56 (286)
++.|..|..+. +.-+ ++..++++.+|++..+++....
T Consensus 12 ~~IL~~L~~~~~~gyel~~~l~~~~~i~~~tly~~L~~Le~~ 53 (108)
T 3l7w_A 12 YLILAIVSKHDSYGYDISQTIKLIASIKESTLYPILKKLEKA 53 (108)
T ss_dssp HHHHHHHHHSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHhCCCcChHHHHHHHHHHC
Confidence 34555666544 3223 4445799999999988766543
No 444
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=27.45 E-value=25 Score=27.09 Aligned_cols=26 Identities=0% Similarity=-0.101 Sum_probs=21.8
Q ss_pred hhcCCChHhhhhhccccHhHHHHHHH
Q psy13113 26 YATGNFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 26 L~~~~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
|+...+..+++..||++.+|++++++
T Consensus 132 ~~~f~s~~eAa~~~Gvs~~tIs~~~~ 157 (174)
T 1u3e_M 132 EKEYPSTKCACEELGLTRGKVTDVLK 157 (174)
T ss_dssp EEEESCHHHHHHHHTCCHHHHHHHHH
T ss_pred EEeeCCHHHHHHHHCcCHhHhHHHHc
Confidence 45556888999999999999998875
No 445
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=27.33 E-value=23 Score=26.76 Aligned_cols=33 Identities=18% Similarity=0.065 Sum_probs=26.7
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhhc
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKCH 61 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~ 61 (286)
+.+.++++..-|||++|++++|..--..+..+.
T Consensus 28 ~~t~~~IA~~Agvs~~tly~~F~sK~~L~~a~~ 60 (194)
T 3dpj_A 28 QTSFVDISAAVGISRGNFYYHFKTKDEILAEVI 60 (194)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred cCCHHHHHHHHCCChHHHHHHcCCHHHHHHHHH
Confidence 469999999999999999999986655555443
No 446
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=27.11 E-value=22 Score=27.56 Aligned_cols=30 Identities=13% Similarity=0.025 Sum_probs=24.0
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHH
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELA 58 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~ 58 (286)
+.+.+++|..-|||++|++.+|..=-+.+.
T Consensus 31 ~~s~~~IA~~aGvskgtlY~~F~sKe~L~~ 60 (210)
T 2wui_A 31 TTAMADLADAAGVSRGAVYGHYKNKIEVCL 60 (210)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHCSSHHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 469999999999999999998874444333
No 447
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=27.04 E-value=27 Score=26.59 Aligned_cols=31 Identities=13% Similarity=0.043 Sum_probs=24.9
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
+.+.+++|..-|||++|++.+|..=-+.+..
T Consensus 30 ~~s~~~IA~~aGvs~gtlY~yF~sKe~L~~a 60 (194)
T 2nx4_A 30 AANMRDIATEAGYTNGALSHYFAGKDEILRT 60 (194)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred cCCHHHHHHHhCCCcchHHHhCcCHHHHHHH
Confidence 4699999999999999999999754444433
No 448
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=26.98 E-value=21 Score=28.19 Aligned_cols=33 Identities=6% Similarity=-0.029 Sum_probs=26.8
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhhc
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKCH 61 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~ 61 (286)
+.+.++++..-|||++|++.+|..--+.+..+.
T Consensus 63 ~~tv~~IA~~AGvs~~t~Y~~F~sKe~Ll~~~~ 95 (229)
T 3bni_A 63 ALSTRAVALRADVPIGSVYRFFGNKRQMADALA 95 (229)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred hccHHHHHHHHCCCchhHHHHcCCHHHHHHHHH
Confidence 369999999999999999999987655555543
No 449
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=26.84 E-value=58 Score=26.68 Aligned_cols=45 Identities=13% Similarity=-0.119 Sum_probs=30.4
Q ss_pred CCCCHHHH-HHHHHHHhh-cCCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 11 VIHSPVVK-LLAVLRFYA-TGNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 11 ~~~~~~~~-l~~~L~~L~-~~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
..++..+- ++.+|+.-. .+.+..+|+...+++.+|+.+++++...
T Consensus 30 ~~lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~ 76 (250)
T 1p4x_A 30 VDMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVK 76 (250)
T ss_dssp CSSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 34666653 333333211 2569999999999999999988875543
No 450
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=26.80 E-value=21 Score=27.51 Aligned_cols=31 Identities=0% Similarity=-0.025 Sum_probs=25.3
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
+.+.++++..-|||++|++.+|..=-+.+..
T Consensus 30 ~~s~~~IA~~aGvs~~t~Y~~F~sKe~L~~a 60 (210)
T 3vib_A 30 RTSLNEIAQAAGVTRDALYWHFKNKEDLFDA 60 (210)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHCSSHHHHHHH
T ss_pred cCCHHHHHHHHCcCHHHHHHHCCCHHHHHHH
Confidence 4699999999999999999998765544444
No 451
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=26.48 E-value=25 Score=27.65 Aligned_cols=41 Identities=17% Similarity=0.005 Sum_probs=30.3
Q ss_pred HHHHHHHhhc----CCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 19 LLAVLRFYAT----GNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 19 l~~~L~~L~~----~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
|-.++..+.. +.+.++++..-|||++|++.+|..--+.+..
T Consensus 46 l~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~F~sK~~L~~~ 90 (225)
T 2id3_A 46 LLAAGDALAADGFDALDLGEIARRAGVGKTTVYRRWGTPGGLAAD 90 (225)
T ss_dssp HHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHH
T ss_pred HHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHHCCCHHHHHHH
Confidence 3344444443 4699999999999999999999876555554
No 452
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=26.28 E-value=19 Score=27.48 Aligned_cols=33 Identities=12% Similarity=0.032 Sum_probs=26.6
Q ss_pred CChHhhhhhccccHhHHHHHHHHHHHHHHhhcc
Q psy13113 30 NFQIDSEDYHDISQSTICRLVAKVSEELAKCHQ 62 (286)
Q Consensus 30 ~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~~ 62 (286)
.+.++++..-|||++|++++|..=-+.+..+..
T Consensus 29 ~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~ 61 (199)
T 2o7t_A 29 LTMENIAEQAGVGVATLYRNFPDRFTLDMACAQ 61 (199)
T ss_dssp CCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 588999999999999999999866555555433
No 453
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=26.25 E-value=22 Score=27.40 Aligned_cols=34 Identities=0% Similarity=-0.046 Sum_probs=27.4
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhhcc
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKCHQ 62 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~~ 62 (286)
+.+.++++..-|||++|++++|..=-+.+..+..
T Consensus 31 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 64 (216)
T 3f0c_A 31 KTTMNEIASDVGMGKASLYYYFPDKETLFEAVIK 64 (216)
T ss_dssp SCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 4699999999999999999999876666555433
No 454
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=26.16 E-value=19 Score=27.46 Aligned_cols=33 Identities=9% Similarity=-0.025 Sum_probs=26.9
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhhc
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKCH 61 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~ 61 (286)
+.+.++++..-|||++|++.+|..=-+.+..+.
T Consensus 35 ~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 67 (199)
T 2rek_A 35 DASLEEIARRAGVGSATLHRHFPSRWGLLQAVF 67 (199)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred CCCHHHHHHHhCCchHHHHHHCCCHHHHHHHHH
Confidence 469999999999999999999986665555543
No 455
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=26.09 E-value=32 Score=26.49 Aligned_cols=32 Identities=9% Similarity=0.088 Sum_probs=25.9
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
+.+.++++..-|||++|++++|..=-+.+..+
T Consensus 32 ~ts~~~IA~~aGvsk~tlY~~F~sKe~L~~~~ 63 (211)
T 3bhq_A 32 GTSMEEIATKAGASKQTVYKHFTDKETLFGEV 63 (211)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 46999999999999999999997654444443
No 456
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=25.91 E-value=29 Score=26.44 Aligned_cols=32 Identities=9% Similarity=0.033 Sum_probs=25.9
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
+.+.++++..-|||++|++.+|..=-..+..+
T Consensus 32 ~~s~~~IA~~aGvs~~tlY~~F~sKe~L~~av 63 (197)
T 2hyt_A 32 DTSMDDLTAQASLTRGALYHHFGDKKGLLAAV 63 (197)
T ss_dssp TCCHHHHHHHHTCCTTHHHHHHSSHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 46999999999999999999997655544443
No 457
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=25.70 E-value=94 Score=24.59 Aligned_cols=38 Identities=21% Similarity=0.146 Sum_probs=30.8
Q ss_pred HHHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHH
Q psy13113 21 AVLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELA 58 (286)
Q Consensus 21 ~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~ 58 (286)
-.+..+..+.....++..+|+|.+||...+..+..-|.
T Consensus 205 ~i~~~~~~g~~~~eia~~l~~s~~tv~~~l~~i~~kl~ 242 (258)
T 3p7n_A 205 EVTTLVASGLRNKEVAARLGLSEKTVKMHRGLVMEKLN 242 (258)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 34445668899999999999999999998887766553
No 458
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=25.66 E-value=37 Score=26.89 Aligned_cols=34 Identities=12% Similarity=0.034 Sum_probs=27.7
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhhcc
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKCHQ 62 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~~ 62 (286)
+.+.+++|..-|||++|++.+|..=-..+..+..
T Consensus 43 ~~s~~~IA~~agvs~~tlY~~F~sKe~L~~av~~ 76 (231)
T 2zcx_A 43 EITLTDIAATVGMHKSALLRYFETREQIFLKITA 76 (231)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHhCCCHHHHHHHHHH
Confidence 4699999999999999999999876666655433
No 459
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=25.64 E-value=23 Score=27.16 Aligned_cols=32 Identities=9% Similarity=0.032 Sum_probs=25.8
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
+.+.++++..-|||++|++.+|..=-+.+..+
T Consensus 34 ~~s~~~IA~~agvs~~tlY~~F~sKe~L~~~~ 65 (204)
T 2ibd_A 34 ATTVRDIADAAGILSGSLYHHFDSKESMVDEI 65 (204)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHCSCHHHHHHHH
T ss_pred hcCHHHHHHHhCCCchhHHHhcCCHHHHHHHH
Confidence 46999999999999999999987655555443
No 460
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=25.48 E-value=20 Score=27.63 Aligned_cols=32 Identities=9% Similarity=-0.074 Sum_probs=26.5
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
+.+.++++..-|||++|++++|..=-+.+..+
T Consensus 23 ~~s~~~IA~~Agvs~~t~Y~~F~sK~~L~~a~ 54 (212)
T 3rh2_A 23 TITTNHIAAHLDISPGNLYYHFRNKEDIIRCI 54 (212)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHH
Confidence 36899999999999999999998766665554
No 461
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=25.43 E-value=21 Score=27.35 Aligned_cols=32 Identities=9% Similarity=0.025 Sum_probs=25.4
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
+.+.++++..-|||++|++++|..=-+.+..+
T Consensus 29 ~~t~~~Ia~~Agvs~gt~Y~yF~sKe~L~~~~ 60 (204)
T 3anp_C 29 ETTATEIAKAAHVSRGTFFNYYPYKEAVLLDY 60 (204)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHCSSTHHHHHHH
T ss_pred cccHHHHHHHcCCchHHHHHHcCCHHHHHHHH
Confidence 46999999999999999999987544444443
No 462
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=25.26 E-value=11 Score=28.24 Aligned_cols=30 Identities=13% Similarity=0.000 Sum_probs=24.7
Q ss_pred CChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 30 NFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 30 ~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
.+.+++|..-|||++|++++|..--+.+..
T Consensus 33 ~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 62 (177)
T 3kkc_A 33 ITVQDVIGLANVGRSTFYSHYESKEVLLKE 62 (177)
T ss_dssp CCHHHHHHHHCCCHHHHTTTCSSTHHHHHH
T ss_pred hhHHHHHHHhCCcHhhHHHHcCCHHHHHHH
Confidence 488999999999999999988765555554
No 463
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=25.24 E-value=19 Score=27.61 Aligned_cols=45 Identities=18% Similarity=0.140 Sum_probs=33.1
Q ss_pred HHHHHHHHHHh--hc----CCChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 16 VVKLLAVLRFY--AT----GNFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 16 ~~~l~~~L~~L--~~----~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
.++++-+...| .. +.+.++++..-|||++|+++++..--+.+..+
T Consensus 21 r~~I~~Aa~~lF~~~~g~~~~tv~~Ia~~Agvs~~t~Y~~F~~K~~L~~~~ 71 (185)
T 3o60_A 21 QTKLYTVLERFYVEDRTFESISIKDLCEQARVSRATFYRHHKEIIQVIEVQ 71 (185)
T ss_dssp HHHHHHHHHHHHHTTCCTTTCCHHHHHHHHTCCHHHHHHHCSSTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 45566665555 42 35889999999999999999998666555543
No 464
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=25.18 E-value=17 Score=27.59 Aligned_cols=32 Identities=16% Similarity=0.112 Sum_probs=26.2
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
+.+.++++..-|||++|++++|..--+.+..+
T Consensus 40 ~~t~~~Ia~~agvs~~t~Y~~F~~K~~L~~~~ 71 (203)
T 3mnl_A 40 AVQMRAVADRADVAVGTLYRYFPSKVHLLVSA 71 (203)
T ss_dssp HCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred cCCHHHHHHHcCCChhHHHHHcCCHHHHHHHH
Confidence 36999999999999999999998765555543
No 465
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=25.08 E-value=31 Score=26.32 Aligned_cols=27 Identities=11% Similarity=-0.050 Sum_probs=22.7
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHH
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSE 55 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~ 55 (286)
+.+.++++..-|||++|++.+|..=-+
T Consensus 30 ~~s~~~Ia~~Agvskgt~Y~yF~sKe~ 56 (197)
T 2f07_A 30 KASISDIVKKAGTAQGTFYLYFSSKNA 56 (197)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHCSSSTT
T ss_pred cCCHHHHHHHhCCCchHHHHhCCCHHH
Confidence 468999999999999999998874333
No 466
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=25.06 E-value=18 Score=27.38 Aligned_cols=32 Identities=13% Similarity=0.051 Sum_probs=25.9
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
+.+.++++..-|||++|++++|..=-+.+..+
T Consensus 27 ~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~ 58 (199)
T 3qbm_A 27 GTAISDIMAATGLEKGGIYRHFESKEQLALAA 58 (199)
T ss_dssp TCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHH
T ss_pred cCCHHHHHHHhCCCccHHHHhCCCHHHHHHHH
Confidence 46899999999999999999887655555543
No 467
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=24.94 E-value=21 Score=28.20 Aligned_cols=32 Identities=6% Similarity=-0.101 Sum_probs=26.4
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
+.+.++++..-|||++|++++|..--+.+..+
T Consensus 33 ~~tv~~IA~~agvs~~t~Y~~F~sK~~Ll~~~ 64 (231)
T 2qib_A 33 EVSIDEIASAAGISRPLVYHYFPGKLSLYEAA 64 (231)
T ss_dssp GCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHH
T ss_pred hcCHHHHHHHhCCCHHHHHHHCCCHHHHHHHH
Confidence 35889999999999999999998766666554
No 468
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=24.76 E-value=21 Score=27.39 Aligned_cols=33 Identities=6% Similarity=-0.046 Sum_probs=27.6
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhhc
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKCH 61 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~ 61 (286)
+.+.+++|..-|||++|++.+|..--+.+..+.
T Consensus 32 ~~s~~~IA~~agvs~~t~Y~hF~~Ke~Ll~al~ 64 (198)
T 3cjd_A 32 SLRARELARQADCAVGAIYTHFQDLNALTLEVN 64 (198)
T ss_dssp GCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHH
T ss_pred hcCHHHHHHHhCCCccHHHHHhCCHHHHHHHHH
Confidence 469999999999999999999987666666543
No 469
>2xpw_A Tetracycline repressor protein class D; transcription, transcription regulator, helix-turn-helix, ME coordination; HET: OTC MES; 1.44A {Escherichia coli} PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2x6o_A* 2x9d_A* 2xps_A* 2xpt_A* 2vke_A* 2xpu_A* 2xpv_A* 2tct_A* 2xb5_A* 2trt_A* 2xrl_A* 1qpi_A* 1a6i_A ...
Probab=24.71 E-value=32 Score=26.91 Aligned_cols=46 Identities=17% Similarity=0.050 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHhhc----CCChHhhhhhccccHhHHHHHHHHHHHHHH
Q psy13113 13 HSPVVKLLAVLRFYAT----GNFQIDSEDYHDISQSTICRLVAKVSEELA 58 (286)
Q Consensus 13 ~~~~~~l~~~L~~L~~----~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~ 58 (286)
++-+.-+-.++..+.. +.+.+.++...|||++|++++|..--+.+.
T Consensus 3 ltr~~Il~aA~~l~~~~G~~~~s~~~IA~~~Gvs~~slY~hF~~K~~Ll~ 52 (207)
T 2xpw_A 3 LNRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLD 52 (207)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHhcCCHHHHHH
Confidence 4455555556665553 469999999999999999998875444433
No 470
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=24.69 E-value=36 Score=26.75 Aligned_cols=44 Identities=9% Similarity=-0.009 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHhhcC-----CChHhhhhhccccHhHHHHHHHHHHHHH
Q psy13113 14 SPVVKLLAVLRFYATG-----NFQIDSEDYHDISQSTICRLVAKVSEEL 57 (286)
Q Consensus 14 ~~~~~l~~~L~~L~~~-----~~~~~l~~~Fgvs~stv~~~~~~v~~~l 57 (286)
+-+.-+-.++..+... .+.++++..-|||++|++++|..--+.+
T Consensus 6 tr~~Il~aA~~l~~~~~G~~~~s~~~IA~~aGvs~~tlY~~F~sK~~Ll 54 (220)
T 1z0x_A 6 SKDTIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYWYFKNKQALL 54 (220)
T ss_dssp SHHHHHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHHHTTCSSHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCcccCCHHHHHHHcCCCHHHHHHhcCCHHHHH
Confidence 3444455555555544 5999999999999999998887544333
No 471
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=24.63 E-value=58 Score=29.56 Aligned_cols=33 Identities=15% Similarity=0.132 Sum_probs=28.9
Q ss_pred hcCCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 27 ATGNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 27 ~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
..+.+..++|..+.||++|+.+-++.+-..|..
T Consensus 106 ~~~isi~~Lae~l~VS~sTi~~DLk~i~~~L~~ 138 (485)
T 3sqn_A 106 TKELVTTSFLSTSGVSYETLKRHIKKMNQALRD 138 (485)
T ss_dssp CSEEEHHHHHHHHTCCHHHHHHHHHHHHHHHGG
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 345688899999999999999999999988875
No 472
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=24.62 E-value=17 Score=27.74 Aligned_cols=33 Identities=9% Similarity=-0.058 Sum_probs=26.6
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhhc
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKCH 61 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~ 61 (286)
+.+.++++..-|||++|++++|..=-+.+..+.
T Consensus 31 ~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 63 (203)
T 3b81_A 31 NTTLAFIINKLGISKGALYHYFSSKEECADAAI 63 (203)
T ss_dssp TCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHH
T ss_pred cCcHHHHHHHhCCCchhHHHHcCCHHHHHHHHH
Confidence 469999999999999999998876655555543
No 473
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=24.57 E-value=51 Score=25.62 Aligned_cols=46 Identities=13% Similarity=-0.027 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHhhcC----CChHhhhhhcc-----ccHhHHHHHHHHHHHHHHh
Q psy13113 12 IHSPVVKLLAVLRFYATG----NFQIDSEDYHD-----ISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 12 ~~~~~~~l~~~L~~L~~~----~~~~~l~~~Fg-----vs~stv~~~~~~v~~~l~~ 59 (286)
.+++.+.- .|.+|..| .+..+++...+ +|..||...+.++..-|..
T Consensus 143 ~Lt~rE~~--vL~~l~~~~~~~~s~~~Ia~~l~~~~~~~s~~tv~~~i~~lr~KL~~ 197 (223)
T 2hqr_A 143 EVKGKPFE--VLTHLARHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDK 197 (223)
T ss_dssp CCCSTTTH--HHHHHHHTCSEEEEHHHHHHHHCCSSCSCGGGTHHHHHHHHHHHHHT
T ss_pred ecCHHHHH--HHHHHHhCCCCcCCHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHhc
Confidence 35554433 35556667 79999999987 9999999999888877764
No 474
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=24.39 E-value=19 Score=27.96 Aligned_cols=43 Identities=7% Similarity=-0.070 Sum_probs=32.1
Q ss_pred HHHHHHHhh-----cCCChHhhhhhccccHhHHHHHHHHHHHHHHhhc
Q psy13113 19 LLAVLRFYA-----TGNFQIDSEDYHDISQSTICRLVAKVSEELAKCH 61 (286)
Q Consensus 19 l~~~L~~L~-----~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~ 61 (286)
+-.++..+. .+.+.++++..-|||++|++++|..--+.+..+.
T Consensus 17 l~aa~~l~~~~~G~~~~ti~~Ia~~Agvs~~t~Y~~F~sK~~Ll~~~~ 64 (220)
T 3lsj_A 17 MSAARHLMESGRGFGSLSLREVTRAAGIVPAGFYRHFSDMDQLGLALV 64 (220)
T ss_dssp HHHHHHHTTTSCCGGGCCHHHHHHHHTSCGGGGTTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHH
Confidence 445555665 2468999999999999999999887666555543
No 475
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=24.39 E-value=25 Score=27.45 Aligned_cols=34 Identities=9% Similarity=0.060 Sum_probs=27.1
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhhcc
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKCHQ 62 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~~ 62 (286)
+.+.++++..-|||++|++.+|..=-+.+..+..
T Consensus 48 ~~t~~~IA~~aGvs~~tlY~~F~sK~~Ll~a~~~ 81 (217)
T 3hta_A 48 GLSHRTVAAEADVPLGSTTYHFATLDDLMVAALR 81 (217)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred cCCHHHHHHHcCCCcchhhhcCCCHHHHHHHHHH
Confidence 4589999999999999999999866555555433
No 476
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=24.38 E-value=22 Score=26.69 Aligned_cols=35 Identities=9% Similarity=-0.073 Sum_probs=27.9
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhhccc
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKCHQQ 63 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~~~ 63 (286)
+.+.++++..-|||++|++++|..--+.+..+...
T Consensus 28 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 62 (195)
T 3pas_A 28 ATSVGKIAKAAGLSPATLYIYYEDKEQLLLATFYY 62 (195)
T ss_dssp HCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHH
T ss_pred hcCHHHHHHHhCCCchHHHHHcCCHHHHHHHHHHH
Confidence 36899999999999999999998766666554333
No 477
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=24.37 E-value=19 Score=26.52 Aligned_cols=31 Identities=13% Similarity=0.015 Sum_probs=25.4
Q ss_pred CChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 30 NFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 30 ~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
.+.++++..-|||++|++++|..=-..+..+
T Consensus 35 ~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~a~ 65 (156)
T 3ljl_A 35 MSYTTLSQQTGVSRTGISHHFPKKTDFTAAL 65 (156)
T ss_dssp CCHHHHHHHHTCCHHHHHHHCSSTHHHHHHH
T ss_pred cCHHHHHHHHCCCHHHHHHHCCCHHHHHHHH
Confidence 5889999999999999999987655555443
No 478
>3ilc_A BCL-2-like protein 1; apoptosis, BH3 domain, alternative splicing, cytoplasm, membrane, mitochondrion, transmembrane; 1.64A {Mus musculus} PDB: 3ihd_A 2bzw_A 1pq1_A 1pq0_A 3ihc_A 3iih_A 1af3_A 3ihf_A 3ilb_A 3iig_A 3ihe_A
Probab=24.35 E-value=29 Score=27.50 Aligned_cols=51 Identities=18% Similarity=0.100 Sum_probs=37.4
Q ss_pred CCCCCCHHHHHHHHHHHhhc------CCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 9 RGVIHSPVVKLLAVLRFYAT------GNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 9 ~~~~~~~~~~l~~~L~~L~~------~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
..+.+++..+|+.+|+.++. ...|+.++....++..++...|.+|.+-|..
T Consensus 77 ~~~~~~~~~~V~~~Lr~lGdElE~~~~~~F~~m~~qL~it~~~a~~~F~~Va~elF~ 133 (197)
T 3ilc_A 77 DAREVIPMAAVKQALREAGDEFELRARRAFSDLTSQLHITPGTAYQSFEQVVNELFR 133 (197)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCTTCCHHHHHHHHGGGGT
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCcchHHHHHHHHHHHHhc
Confidence 34567788999999999874 4678899999999999988888877766554
No 479
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=24.25 E-value=34 Score=22.37 Aligned_cols=26 Identities=4% Similarity=0.008 Sum_probs=16.2
Q ss_pred HHHHHhhcC--CChHhhhhhccccHhHH
Q psy13113 21 AVLRFYATG--NFQIDSEDYHDISQSTI 46 (286)
Q Consensus 21 ~~L~~L~~~--~~~~~l~~~Fgvs~stv 46 (286)
-++.|++.. ....+||..||++..-+
T Consensus 11 ~Fi~yIk~~Kvv~LedLA~~F~l~t~~~ 38 (72)
T 1wi9_A 11 EFINYIKKSKVVLLEDLAFQMGLRTQDA 38 (72)
T ss_dssp HHHHHHHHCSEECHHHHHHHHCSCHHHH
T ss_pred HHHHHHHHcCeeeHHHHHHHhCCChHHH
Confidence 345555544 37777888888876433
No 480
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=24.17 E-value=18 Score=27.92 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=27.7
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhhccc
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKCHQQ 63 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~~~ 63 (286)
+.+.++++..-|||++|++++|..=-+.+..+...
T Consensus 31 ~~s~~~IA~~agvs~~t~Y~~F~sK~~L~~~v~~~ 65 (212)
T 2ras_A 31 GLTLSELAARAGISQANLSRYFETREDLMEAIADY 65 (212)
T ss_dssp CCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHH
T ss_pred cCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 46999999999999999999998665555554433
No 481
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=24.08 E-value=22 Score=27.43 Aligned_cols=33 Identities=9% Similarity=0.011 Sum_probs=26.5
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhhc
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKCH 61 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~ 61 (286)
+.+.+++|..-|||++|++++|..=-+.+..+.
T Consensus 28 ~~s~~~IA~~AGvs~gt~Y~yF~sKe~L~~~v~ 60 (206)
T 1vi0_A 28 QSQVSKIAKQAGVADGTIYLYFKNKEDILISLF 60 (206)
T ss_dssp GCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHH
T ss_pred cCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHH
Confidence 469999999999999999999986555555443
No 482
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=24.01 E-value=17 Score=27.82 Aligned_cols=35 Identities=11% Similarity=-0.085 Sum_probs=27.9
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhhccc
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKCHQQ 63 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~~~ 63 (286)
+.+.++++..-|||++|++.+|..=-+.+..+...
T Consensus 34 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 68 (215)
T 3e7q_A 34 GASVRKICAEAGVSVGLINHHYDGKDALVAEAYLA 68 (215)
T ss_dssp HCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 46899999999999999999998666666554333
No 483
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=23.95 E-value=62 Score=24.48 Aligned_cols=40 Identities=3% Similarity=-0.035 Sum_probs=26.4
Q ss_pred CCCHHHHHH-HHHHHhhcC----CChHhhhhhccccHhHHHHHHH
Q psy13113 12 IHSPVVKLL-AVLRFYATG----NFQIDSEDYHDISQSTICRLVA 51 (286)
Q Consensus 12 ~~~~~~~l~-~~L~~L~~~----~~~~~l~~~Fgvs~stv~~~~~ 51 (286)
.++..-..+ -+|.+|+.. .+-+++|..+++|...+.+++.
T Consensus 6 kis~k~~yAlr~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~ 50 (162)
T 3k69_A 6 NMKLDFSVAVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILS 50 (162)
T ss_dssp -CTHHHHHHHHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHH
T ss_pred cccHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 344433333 355566642 4778899999999998888775
No 484
>2w3l_A BCL2-XL, apoptosis regulator BCL-2; HET: DRO; 2.10A {Homo sapiens} PDB: 2o2f_A*
Probab=23.91 E-value=45 Score=24.74 Aligned_cols=46 Identities=17% Similarity=0.014 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHhhcC------CChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 14 SPVVKLLAVLRFYATG------NFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 14 ~~~~~l~~~L~~L~~~------~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
++..++..+|..++.. ..++.++..+.++..++...+.+|.+-|..
T Consensus 26 ~~p~~~~~~Lr~~gdele~~~~~~f~~~~~~l~i~~~~~~~~f~~Va~elF~ 77 (144)
T 2w3l_A 26 ADSEVVHKTLREAGDDFSRRYRRDFAEMSSGLHLTPFTARGRFATVVEELFR 77 (144)
T ss_dssp --CHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCCCTTTHHHHHHHHHHHHTT
T ss_pred CcccHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCccHHHHHHHHHHHHhc
Confidence 3456888888888742 356778888999999999989888877665
No 485
>3c19_A Uncharacterized protein MK0293; protein structure initiative, PSI-2, NEW YORK SGX research center for structu genomics, nysgxrc; 2.50A {Methanopyrus kandleri AV19}
Probab=23.89 E-value=42 Score=26.28 Aligned_cols=28 Identities=14% Similarity=0.046 Sum_probs=24.3
Q ss_pred EeeeeeeEEEecCCCCCCccccccCCCccccceeeecCC
Q psy13113 89 VGCIDGTHVPIELPSIENGEHYRNRKHFYSINVQVIGGP 127 (286)
Q Consensus 89 ~g~iDgt~i~i~~P~~~~~~~y~~~k~~~s~~~q~vvd~ 127 (286)
.|++|....|+. -||++++..+.++|++
T Consensus 38 aGAlDV~~tPi~-----------MKKnRPg~~L~VLc~~ 65 (186)
T 3c19_A 38 EEVLACHAVPCV-----------TKKNRPGHVLVVLVDG 65 (186)
T ss_dssp TTEEEEEEEEEE-----------ETTTEEEEEEEEEEEC
T ss_pred CCCeEEEeeece-----------EeCCCceEEEEEEECC
Confidence 378999999987 3588899999999988
No 486
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=23.80 E-value=17 Score=29.83 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=0.0
Q ss_pred ChHhhhhhccccHhHHHHHHHHHH
Q psy13113 31 FQIDSEDYHDISQSTICRLVAKVS 54 (286)
Q Consensus 31 ~~~~l~~~Fgvs~stv~~~~~~v~ 54 (286)
+-++|+..||||+.||.+.+....
T Consensus 42 se~~La~~~~vSr~tvr~Al~~L~ 65 (247)
T 2ra5_A 42 NEIELAARLGLSRPTVRQAIQSLV 65 (247)
T ss_dssp ------------------------
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 567899999999999998776543
No 487
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=23.79 E-value=19 Score=26.96 Aligned_cols=33 Identities=3% Similarity=-0.074 Sum_probs=26.9
Q ss_pred CCChHhhhhhccccHhHHHHHHHH-HHHHHHhhc
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAK-VSEELAKCH 61 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~-v~~~l~~~~ 61 (286)
+.+.++++..-|||++|++++|.. --..+..+.
T Consensus 26 ~~t~~~Ia~~agvs~~t~Y~~F~~sK~~L~~~~~ 59 (191)
T 1sgm_A 26 ATGLNQIVKESGAPKGSLYHFFPNGKEELAIEAV 59 (191)
T ss_dssp TCCHHHHHHHHCCCSCHHHHSTTTCHHHHHHHHH
T ss_pred ccCHHHHHHHHCCCchhHHHHccccHHHHHHHHH
Confidence 469999999999999999999985 655555543
No 488
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=23.61 E-value=23 Score=26.84 Aligned_cols=31 Identities=6% Similarity=-0.009 Sum_probs=25.6
Q ss_pred CChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 30 NFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 30 ~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
.+.++++..-|||++|++.+|..=-+.+..+
T Consensus 35 ~s~~~IA~~agvs~~tlY~~F~sK~~L~~~~ 65 (194)
T 2q24_A 35 AHLERIAREAGVGSGTLYRNFPTREALIEAA 65 (194)
T ss_dssp CCHHHHHHHTTCCHHHHHHHCCSHHHHHHHH
T ss_pred CCHHHHHHHhCCChHHHHHHcCCHHHHHHHH
Confidence 6999999999999999999987655555543
No 489
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=23.60 E-value=17 Score=30.23 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 22 VLRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 22 ~L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
++.-++...++...|...++|++++++.+++..+.|..
T Consensus 8 ~F~~va~~gs~s~AA~~L~isq~avS~~I~~LE~~lg~ 45 (312)
T 2h9b_A 8 YFVAVVEEQSFTKAADKLCIAQPPLSRQIQNLEEELGI 45 (312)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHhCCHHHHHHHhcCCccHHHHHHHHHHHHhCC
Confidence 33444556689999999999999999999999887764
No 490
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=23.51 E-value=17 Score=27.86 Aligned_cols=48 Identities=8% Similarity=0.068 Sum_probs=33.6
Q ss_pred CHHHHHHHH-HHHh-hc-C---CChHhhhhhccccHhHHHHHHHHHHHHHHhhc
Q psy13113 14 SPVVKLLAV-LRFY-AT-G---NFQIDSEDYHDISQSTICRLVAKVSEELAKCH 61 (286)
Q Consensus 14 ~~~~~l~~~-L~~L-~~-~---~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~ 61 (286)
...++++-+ +..| .. | .+.++++..-|||++|++.+|..=-+.+..+.
T Consensus 24 ~~r~~Il~aA~~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 77 (212)
T 3nxc_A 24 NRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLI 77 (212)
T ss_dssp TTHHHHHHHHHHHHHC------CCHHHHHHHTTSCHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCChhhcCHHHHHHHhCCChhHHHHHCCCHHHHHHHHH
Confidence 334555555 5535 43 3 69999999999999999999886666655543
No 491
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.50 E-value=44 Score=24.52 Aligned_cols=16 Identities=6% Similarity=-0.014 Sum_probs=12.8
Q ss_pred eeeecCCCccEEEecc
Q psy13113 121 VQVIGGPNLEIYDVVA 136 (286)
Q Consensus 121 ~q~vvd~~g~i~~~~~ 136 (286)
.+++|..-|++..+..
T Consensus 86 ~HliC~~Cg~v~~~~~ 101 (139)
T 3mwm_A 86 HHLVCRACGKAVEVEG 101 (139)
T ss_dssp EEEEETTTCCEEEECC
T ss_pred cEEEECCCCCEeeccc
Confidence 4588999999988854
No 492
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=23.46 E-value=34 Score=26.41 Aligned_cols=31 Identities=10% Similarity=0.072 Sum_probs=26.1
Q ss_pred CChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 30 NFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 30 ~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
.+.+++|..-|||++|++++|..=-..+..+
T Consensus 32 ~s~~~IA~~agvs~~tiY~~F~sK~~L~~~~ 62 (224)
T 1t33_A 32 ATTRDIAALAGQNIAAITYYFGSKEDLYLAC 62 (224)
T ss_dssp SCHHHHHHHHTSCHHHHHHHHSSHHHHHHHH
T ss_pred ccHHHHHHHhCCCHHHHHHhcCCHHHHHHHH
Confidence 7899999999999999999998765555543
No 493
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=23.34 E-value=26 Score=26.99 Aligned_cols=32 Identities=9% Similarity=0.079 Sum_probs=25.7
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
+.+.++++..-|||++|++++|..=-+.+..+
T Consensus 31 ~~s~~~IA~~aGvskgtlY~~F~sKe~L~~~~ 62 (210)
T 2xdn_A 31 RTTLADIAELAGVTRGAIYWHFNNKAELVQAL 62 (210)
T ss_dssp TCCHHHHHHHHTCCTTHHHHHCSSHHHHHHHH
T ss_pred cCcHHHHHHHHCCChHHHHHHhCCHHHHHHHH
Confidence 46999999999999999999997654444443
No 494
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=23.34 E-value=32 Score=26.21 Aligned_cols=32 Identities=6% Similarity=-0.092 Sum_probs=25.6
Q ss_pred CCChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 29 GNFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 29 ~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
+.+.++++..-|||++|++.+|..=-+.+..+
T Consensus 27 ~ts~~~IA~~aGvs~gtlY~~F~sKe~L~~av 58 (197)
T 2gen_A 27 ATTIEMIRDRSGASIGSLYHHFGNKERIHGEL 58 (197)
T ss_dssp TCCHHHHHHHHCCCHHHHHHHTCSHHHHHHHH
T ss_pred cCCHHHHHHHHCCChHHHHHHCCCHHHHHHHH
Confidence 46999999999999999999997555444443
No 495
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=23.29 E-value=52 Score=26.19 Aligned_cols=45 Identities=13% Similarity=-0.024 Sum_probs=33.2
Q ss_pred HHHHHHHhhcC----CChHhhhhhccccHhHHHHHHHHHHHHHHhhccc
Q psy13113 19 LLAVLRFYATG----NFQIDSEDYHDISQSTICRLVAKVSEELAKCHQQ 63 (286)
Q Consensus 19 l~~~L~~L~~~----~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~~~~ 63 (286)
|-.++..+... .+.++++..-|||++|++++|..--+.+..+...
T Consensus 49 l~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~~F~sK~~L~~~v~~~ 97 (255)
T 3g1o_A 49 LATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDR 97 (255)
T ss_dssp HHHHHHHHTTSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 44556666543 5889999999999999999998766666554433
No 496
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=23.15 E-value=1.5e+02 Score=20.73 Aligned_cols=45 Identities=11% Similarity=0.096 Sum_probs=29.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCC-hHh----hhh---hccccHhHHHHHHHHHH
Q psy13113 10 GVIHSPVVKLLAVLRFYATGNF-QID----SED---YHDISQSTICRLVAKVS 54 (286)
Q Consensus 10 ~~~~~~~~~l~~~L~~L~~~~~-~~~----l~~---~Fgvs~stv~~~~~~v~ 54 (286)
+..++-+-.+++.|..|..+.. .-+ +.. .+++|.+|++..+++..
T Consensus 15 ~~~l~~~l~~~~IL~lL~~~~~~Gyei~~~l~~~~~~~~is~gtLY~~L~rLe 67 (115)
T 2dql_A 15 PTYLCQEVAICYILYVLLQGESYGTELIQQLETEHPTYRLSDTVLYSAIKFLE 67 (115)
T ss_dssp CEECCHHHHHHHHHHHHTTSCBCHHHHHHHHHHHCTTEECCHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHhCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHH
Confidence 3457778888888888886543 222 322 35799999998776544
No 497
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=23.12 E-value=50 Score=25.23 Aligned_cols=45 Identities=13% Similarity=0.033 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhc----CCChHhhhhhccccHhHHHHHHHHHHHHHHhh
Q psy13113 16 VVKLLAVLRFYAT----GNFQIDSEDYHDISQSTICRLVAKVSEELAKC 60 (286)
Q Consensus 16 ~~~l~~~L~~L~~----~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~~ 60 (286)
+.-|-.++..+.. +.+.++++..-|||++|++.+|..=-..+..+
T Consensus 12 ~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~gtlY~~F~sKe~L~~a~ 60 (203)
T 2np5_A 12 ERLAAALFDVAAESGLEGASVREVAKRAGVSIGAVQHHFSTKDEMFAFA 60 (203)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhccHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 3444445555543 46999999999999999999987644444443
No 498
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=23.09 E-value=25 Score=27.22 Aligned_cols=30 Identities=7% Similarity=0.041 Sum_probs=24.1
Q ss_pred CChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 30 NFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 30 ~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
.+.++++..-|||++|++++|..=-+.+..
T Consensus 43 ~s~~~IA~~AGVsk~tlY~~F~sKe~L~~a 72 (207)
T 3bjb_A 43 VQMHEVAKRAGVAIGTLYRYFPSKTHLFVA 72 (207)
T ss_dssp CCHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHCCCHHHHHHH
Confidence 588999999999999999998754444433
No 499
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=22.78 E-value=50 Score=22.14 Aligned_cols=36 Identities=8% Similarity=-0.021 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCChHhhhhhccccHhHHHHHH
Q psy13113 11 VIHSPVVKLLAVLRFYATGNFQIDSEDYHDISQSTICRLV 50 (286)
Q Consensus 11 ~~~~~~~~l~~~L~~L~~~~~~~~l~~~Fgvs~stv~~~~ 50 (286)
-+.+..++|...|. |..|+.||..+|++...+..+-
T Consensus 7 lp~~~r~~l~~lL~----g~dW~~LA~~Lg~~~~~I~~~~ 42 (85)
T 1ngr_A 7 LPLTKREEVEKLLN----GDTWRHLAGELGYQPEHIDSFT 42 (85)
T ss_dssp SCSTTTHHHHHHSC----TTHHHHHHHHTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHhC----cCCHHHHHHHcCCCHHHHHHHH
Confidence 34566788888887 9999999999999987665543
No 500
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=22.74 E-value=18 Score=30.24 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHhhcCCChHhhhhhccccHhHHHHHHHHHHHHHHh
Q psy13113 23 LRFYATGNFQIDSEDYHDISQSTICRLVAKVSEELAK 59 (286)
Q Consensus 23 L~~L~~~~~~~~l~~~Fgvs~stv~~~~~~v~~~l~~ 59 (286)
+.-++...++...|...++|+++|++.+++..+.|..
T Consensus 9 F~~vae~gS~s~AA~~L~isq~avS~~I~~LE~~lG~ 45 (313)
T 2h98_A 9 FVTVVEEQSISKAAEKLCIAQPPLSRQIQKLEEELGI 45 (313)
T ss_dssp -------------------------------------
T ss_pred HHHHHHhCCHHHHHHHhCCCccHHHHHHHHHHHHhCC
Confidence 3344556789999999999999999999998887763
Done!