RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13113
         (286 letters)



>g1qqp.1 b.121.4.1 (4:,2:) Aphthovirus (Foot-and-mouth disease
           virus) coat proteins {FMDV (Foot-and-mouth disease
           virus), strain bfs, 1860 [TaxId: 12110]}
          Length = 289

 Score = 26.8 bits (59), Expect = 3.2
 Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 67  FPEDLQTAKNQFSGIAGFPRVVVGCIDGTHVPIELPSIENGEHYRNRKH-FYSINVQVI 124
            PE     K +   +  FP   +         I +P +    + + + H  +++ V V+
Sbjct: 197 VPELCSIQKRELYQLTLFPHQFINPRTNMTAHITVPFVGVNRYDQYKVHKPWTLVVMVV 255


>d1pgl11 b.121.4.2 (1:1-185) Comovirus coat proteins (VP37 and VP23)
           {BPMV (Bean pod mottle virus) [TaxId: 12260]}
          Length = 185

 Score = 26.4 bits (58), Expect = 3.3
 Identities = 23/93 (24%), Positives = 30/93 (32%), Gaps = 21/93 (22%)

Query: 11  VIHSPVVKLLAV-------LRFY--ATGNFQIDSEDYHDISQSTICRLVAKVSEELAKCH 61
           V +SP+  LL V       L      +GN  +   D+  + Q     L    S E     
Sbjct: 51  VQNSPISNLLRVAAWKKGCLMVKVVMSGNAAVKRSDWASLVQVF---LTNSNSTE----- 102

Query: 62  QQWIHFPEDLQTAKNQFSGIAGFPRVVVGCIDG 94
               HF     T     S    FP  V G  +G
Sbjct: 103 ----HFDACRWTKSEPHSWELIFPIEVCGPNNG 131


>d1vnsa_ a.111.1.3 (A:) Chloroperoxidase {Curvularia inaequalis
           [TaxId: 38902]}
          Length = 574

 Score = 25.6 bits (55), Expect = 8.9
 Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 2/27 (7%)

Query: 180 TPVRNPITPTPSQVAYNAAQIRTRNSV 206
           TP+  P    P +  YN   I   N V
Sbjct: 2   TPIPLPKIDEPEE--YNTNYILFWNHV 26


>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 196

 Score = 25.1 bits (54), Expect = 9.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 181 PVRNPITPTPSQVAYNA 197
           P+RN     P+QV Y  
Sbjct: 2   PLRNEAIVIPTQVNYVG 18


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0590    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,119,243
Number of extensions: 52709
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 4
Length of query: 286
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,254,276
Effective search space: 253363752
Effective search space used: 253363752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.1 bits)