BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13118
(286 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28346|RL4_CANFA 60S ribosomal protein L4 OS=Canis familiaris GN=RPL4 PE=1 SV=2
Length = 421
Score = 247 bits (631), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 113/143 (79%), Positives = 128/143 (89%)
Query: 16 VGVARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGH 75
+ ARPLI+VYSEK E +G+ VTLP+VFKAPIRPD+VNFVH NL KN+RQPYAVS+ AGH
Sbjct: 1 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 60
Query: 76 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQR 135
QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR GRMFAPT+ WRRWHR+VN Q+
Sbjct: 61 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120
Query: 136 RYAMVSAIAASSVPALVMSKGHQ 158
RYA+ SA+A S+PALVMSKGH+
Sbjct: 121 RYAICSALACLSLPALVMSKGHR 143
Score = 216 bits (551), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 102/157 (64%), Positives = 121/157 (77%), Gaps = 11/157 (7%)
Query: 127 HRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 186
H + N R+ VS +A GHQTSAESWGTGRAVARIPRVRGGGTHRSGQ
Sbjct: 41 HTNLRKNNRQPYAVSELA-----------GHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 89
Query: 187 GAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPE 246
GAFGNMCR GRMFAPT+ WRRWHR+VN Q+RYA+ SA+A S+PALVMSKGH I++VPE
Sbjct: 90 GAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALACLSLPALVMSKGHRIEEVPE 149
Query: 247 FPLVVSDKIQEYKKTKQATIFLHRIKAWNDVLKVQSS 283
PLVV DK++ YKKTK+A + L ++KAWND+ KV +S
Sbjct: 150 LPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYAS 186
>sp|P09180|RL4_DROME 60S ribosomal protein L4 OS=Drosophila melanogaster GN=RpL4 PE=2
SV=2
Length = 401
Score = 243 bits (619), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 116/144 (80%), Positives = 129/144 (89%), Gaps = 1/144 (0%)
Query: 15 SVGVARPLITVYSEKNEPT-GQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDA 73
S+G ARPL++VY+EKNEP + + LP+VFKAPIRPDVVN VHQ L +N+RQ YAVS+ A
Sbjct: 2 SLGNARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELA 61
Query: 74 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 133
GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR GRMFAPT+ +RRWHRKVNVN
Sbjct: 62 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVN 121
Query: 134 QRRYAMVSAIAASSVPALVMSKGH 157
QRRYA+VSAIAAS VPALV SKGH
Sbjct: 122 QRRYALVSAIAASGVPALVQSKGH 145
Score = 224 bits (571), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 116/190 (61%), Positives = 134/190 (70%), Gaps = 13/190 (6%)
Query: 99 THRSGQGAFGNMCRAGRMFAPTR--IWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKG 156
T ++ N+C AP R + H+ + N R+ VS +A G
Sbjct: 14 TEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELA-----------G 62
Query: 157 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQ 216
HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR GRMFAPT+ +RRWHRKVNVNQ
Sbjct: 63 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQ 122
Query: 217 RRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWND 276
RRYA+VSAIAAS VPALV SKGH+I V EFPLVVSD++Q+ +KTKQA IFL R+K W D
Sbjct: 123 RRYALVSAIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWAD 182
Query: 277 VLKVQSSGTF 286
+ KV S F
Sbjct: 183 IQKVYKSQRF 192
>sp|P02385|RL4B_XENLA 60S ribosomal protein L4-B OS=Xenopus laevis GN=rpl4-b PE=2 SV=2
Length = 401
Score = 233 bits (594), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 114/144 (79%), Positives = 131/144 (90%)
Query: 15 SVGVARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAG 74
S+ ARPLI+VYSEK E +G+ VT+P+VFKAPIRPD+VNFVH NL KN+RQPYAVSK AG
Sbjct: 4 SMACARPLISVYSEKGETSGKNVTMPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSKLAG 63
Query: 75 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQ 134
HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR GRMFAPT+ WRRWHR+VN Q
Sbjct: 64 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQ 123
Query: 135 RRYAMVSAIAASSVPALVMSKGHQ 158
+RYA+ SA+AAS++PAL+MSKGH+
Sbjct: 124 KRYAVCSALAASALPALIMSKGHR 147
Score = 199 bits (507), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/128 (74%), Positives = 114/128 (89%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR GRMFAPT+ WRRWHR+VN
Sbjct: 63 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTT 122
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWN 275
Q+RYA+ SA+AAS++PAL+MSKGH I+++PE PLVV DK++ YKKTK+A + L ++KAWN
Sbjct: 123 QKRYAVCSALAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWN 182
Query: 276 DVLKVQSS 283
D+ KV +S
Sbjct: 183 DIKKVYAS 190
>sp|P08429|RL4A_XENLA 60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-a PE=2 SV=2
Length = 396
Score = 231 bits (590), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 113/144 (78%), Positives = 131/144 (90%)
Query: 15 SVGVARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAG 74
S+ ARPLI+VYSEK E +G+ VT+P+VF+APIRPD+VNFVH NL KN+RQPYAVSK AG
Sbjct: 4 SMACARPLISVYSEKGESSGKNVTMPAVFRAPIRPDIVNFVHTNLRKNNRQPYAVSKLAG 63
Query: 75 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQ 134
HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR GRMFAPT+ WRRWHR+VN Q
Sbjct: 64 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQ 123
Query: 135 RRYAMVSAIAASSVPALVMSKGHQ 158
+RYA+ SA+AAS++PAL+MSKGH+
Sbjct: 124 KRYAVCSALAASALPALIMSKGHR 147
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/128 (74%), Positives = 114/128 (89%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR GRMFAPT+ WRRWHR+VN
Sbjct: 63 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTT 122
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWN 275
Q+RYA+ SA+AAS++PAL+MSKGH I+++PE PLVV DK++ YKKTK+A + L ++KAWN
Sbjct: 123 QKRYAVCSALAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWN 182
Query: 276 DVLKVQSS 283
D+ KV +S
Sbjct: 183 DIKKVYAS 190
>sp|Q58DW0|RL4_BOVIN 60S ribosomal protein L4 OS=Bos taurus GN=RPL4 PE=2 SV=3
Length = 422
Score = 231 bits (589), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 114/143 (79%), Positives = 130/143 (90%)
Query: 16 VGVARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGH 75
+ ARPLI+VYSEK E +G+ VTLP+VFKAPIRPD+VNFVH NL KN+RQPYAVS+ AGH
Sbjct: 1 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 60
Query: 76 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQR 135
QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR GRMFAPT+ WRRWHR+VN Q+
Sbjct: 61 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120
Query: 136 RYAMVSAIAASSVPALVMSKGHQ 158
RYA+ SA+AAS++PALVMSKGH+
Sbjct: 121 RYAICSALAASALPALVMSKGHR 143
Score = 200 bits (509), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 123/157 (78%), Gaps = 11/157 (7%)
Query: 127 HRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 186
H + N R+ VS +A GHQTSAESWGTGRAVARIPRVRGGGTHRSGQ
Sbjct: 41 HTNLRKNNRQPYAVSELA-----------GHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 89
Query: 187 GAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPE 246
GAFGNMCR GRMFAPT+ WRRWHR+VN Q+RYA+ SA+AAS++PALVMSKGH I++VPE
Sbjct: 90 GAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPE 149
Query: 247 FPLVVSDKIQEYKKTKQATIFLHRIKAWNDVLKVQSS 283
PLVV DK++ YKKTK+A + L ++KAWND+ KV +S
Sbjct: 150 LPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYAS 186
>sp|P49165|RL4_URECA 60S ribosomal protein L4 OS=Urechis caupo GN=RPL4 PE=2 SV=1
Length = 386
Score = 231 bits (589), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 108/139 (77%), Positives = 122/139 (87%)
Query: 19 ARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTS 78
ARPLITV+S+K + VTLP+VF+APIRPD+VNFVH L KN RQPYAVS+ AGHQTS
Sbjct: 3 ARPLITVHSDKGAASESNVTLPAVFRAPIRPDIVNFVHFELKKNGRQPYAVSQKAGHQTS 62
Query: 79 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYA 138
AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR RMFAPT+ WRRWHR+VN QRR+A
Sbjct: 63 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGRRMFAPTKTWRRWHRRVNTTQRRHA 122
Query: 139 MVSAIAASSVPALVMSKGH 157
+VSAIAA+ +PA+VMSKGH
Sbjct: 123 LVSAIAATGIPAVVMSKGH 141
Score = 210 bits (534), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 97/137 (70%), Positives = 114/137 (83%)
Query: 150 ALVMSKGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWH 209
A+ GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR RMFAPT+ WRRWH
Sbjct: 52 AVSQKAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGRRMFAPTKTWRRWH 111
Query: 210 RKVNVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLH 269
R+VN QRR+A+VSAIAA+ +PA+VMSKGH I+ +PE PLVVSD ++ KKTK+A + L
Sbjct: 112 RRVNTTQRRHALVSAIAATGIPAVVMSKGHCIEQIPEVPLVVSDSVESIKKTKEAVVVLR 171
Query: 270 RIKAWNDVLKVQSSGTF 286
R+KAW DV KV++S F
Sbjct: 172 RLKAWPDVEKVKNSRRF 188
>sp|Q5RCR3|RL4_PONAB 60S ribosomal protein L4 OS=Pongo abelii GN=RPL4 PE=2 SV=1
Length = 427
Score = 231 bits (589), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 114/143 (79%), Positives = 130/143 (90%)
Query: 16 VGVARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGH 75
+ ARPLI+VYSEK E +G+ VTLP+VFKAPIRPD+VNFVH NL KN+RQPYAVS+ AGH
Sbjct: 1 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 60
Query: 76 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQR 135
QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR GRMFAPT+ WRRWHR+VN Q+
Sbjct: 61 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120
Query: 136 RYAMVSAIAASSVPALVMSKGHQ 158
RYA+ SA+AAS++PALVMSKGH+
Sbjct: 121 RYAICSALAASALPALVMSKGHR 143
Score = 195 bits (495), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 108/183 (59%), Positives = 131/183 (71%), Gaps = 13/183 (7%)
Query: 103 GQGAFGNMCRAGRMFAPTR--IWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTS 160
G+ + N+ AP R I H + N R+ VS +A GHQTS
Sbjct: 15 GESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELA-----------GHQTS 63
Query: 161 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYA 220
AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR GRMFAPT+ WRRWHR+VN Q+RYA
Sbjct: 64 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYA 123
Query: 221 MVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWNDVLKV 280
+ SA+AAS++PALVMSKGH I++VPE PLVV DK++ YKKTK+A + L ++KA ND+ KV
Sbjct: 124 ICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKARNDIKKV 183
Query: 281 QSS 283
+S
Sbjct: 184 YAS 186
>sp|P36578|RL4_HUMAN 60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5
Length = 427
Score = 230 bits (587), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 114/143 (79%), Positives = 130/143 (90%)
Query: 16 VGVARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGH 75
+ ARPLI+VYSEK E +G+ VTLP+VFKAPIRPD+VNFVH NL KN+RQPYAVS+ AGH
Sbjct: 1 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 60
Query: 76 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQR 135
QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR GRMFAPT+ WRRWHR+VN Q+
Sbjct: 61 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120
Query: 136 RYAMVSAIAASSVPALVMSKGHQ 158
RYA+ SA+AAS++PALVMSKGH+
Sbjct: 121 RYAICSALAASALPALVMSKGHR 143
Score = 199 bits (507), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 97/128 (75%), Positives = 114/128 (89%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR GRMFAPT+ WRRWHR+VN
Sbjct: 59 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTT 118
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWN 275
Q+RYA+ SA+AAS++PALVMSKGH I++VPE PLVV DK++ YKKTK+A + L ++KAWN
Sbjct: 119 QKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWN 178
Query: 276 DVLKVQSS 283
D+ KV +S
Sbjct: 179 DIKKVYAS 186
>sp|Q4R5P9|RL4_MACFA 60S ribosomal protein L4 OS=Macaca fascicularis GN=RPL4 PE=2 SV=1
Length = 427
Score = 230 bits (587), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 114/142 (80%), Positives = 129/142 (90%)
Query: 16 VGVARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGH 75
+ ARPLI+VYSEK E +G+ VTLP+VFKAPIRPD+VNFVH NL KN+RQPYAVS+ AGH
Sbjct: 1 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 60
Query: 76 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQR 135
QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR GRMFAPT+ WRRWHR+VN Q+
Sbjct: 61 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120
Query: 136 RYAMVSAIAASSVPALVMSKGH 157
RYA+ SA+AAS++PALVMSKGH
Sbjct: 121 RYAICSALAASALPALVMSKGH 142
Score = 199 bits (507), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 123/157 (78%), Gaps = 11/157 (7%)
Query: 127 HRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 186
H + N R+ VS +A GHQTSAESWGTGRAVARIPRVRGGGTHRSGQ
Sbjct: 41 HTNLRKNNRQPYAVSELA-----------GHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 89
Query: 187 GAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPE 246
GAFGNMCR GRMFAPT+ WRRWHR+VN Q+RYA+ SA+AAS++PALVMSKGH I++VPE
Sbjct: 90 GAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHSIEEVPE 149
Query: 247 FPLVVSDKIQEYKKTKQATIFLHRIKAWNDVLKVQSS 283
PLVV DK++ YKKTK+A + L ++KAWND+ KV +S
Sbjct: 150 LPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYAS 186
>sp|Q9D8E6|RL4_MOUSE 60S ribosomal protein L4 OS=Mus musculus GN=Rpl4 PE=1 SV=3
Length = 419
Score = 230 bits (586), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 114/143 (79%), Positives = 130/143 (90%)
Query: 16 VGVARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGH 75
+ ARPLI+VYSEK E +G+ VTLP+VFKAPIRPD+VNFVH NL KN+RQPYAVS+ AGH
Sbjct: 1 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 60
Query: 76 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQR 135
QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR GRMFAPT+ WRRWHR+VN Q+
Sbjct: 61 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120
Query: 136 RYAMVSAIAASSVPALVMSKGHQ 158
RYA+ SA+AAS++PALVMSKGH+
Sbjct: 121 RYAICSALAASALPALVMSKGHR 143
Score = 197 bits (502), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 122/157 (77%), Gaps = 11/157 (7%)
Query: 127 HRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 186
H + N R+ VS +A GHQTSAESWGTGRAVARIPRVRGGGTHRSGQ
Sbjct: 41 HTNLRKNNRQPYAVSELA-----------GHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 89
Query: 187 GAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPE 246
GAFGNMCR GRMFAPT+ WRRWHR+VN Q+RYA+ SA+AAS++PALVMSKGH I++VPE
Sbjct: 90 GAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPE 149
Query: 247 FPLVVSDKIQEYKKTKQATIFLHRIKAWNDVLKVQSS 283
PLVV DK++ YKKTK+A L ++KAWND+ KV +S
Sbjct: 150 LPLVVEDKVEGYKKTKEAVQLLKKLKAWNDIKKVYAS 186
>sp|P50878|RL4_RAT 60S ribosomal protein L4 OS=Rattus norvegicus GN=Rpl4 PE=1 SV=3
Length = 421
Score = 229 bits (585), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/142 (80%), Positives = 129/142 (90%)
Query: 16 VGVARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGH 75
+ ARPLI+VYSEK E +G+ VTLP+VFKAPIRPD+VNFVH NL KN+RQPYAVS+ AGH
Sbjct: 1 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 60
Query: 76 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQR 135
QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR GRMFAPT+ WRRWHR+VN Q+
Sbjct: 61 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120
Query: 136 RYAMVSAIAASSVPALVMSKGH 157
RYA+ SA+AAS++PALVMSKGH
Sbjct: 121 RYAICSALAASALPALVMSKGH 142
Score = 197 bits (502), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 102/157 (64%), Positives = 122/157 (77%), Gaps = 11/157 (7%)
Query: 127 HRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 186
H + N R+ VS +A GHQTSAESWGTGRAVARIPRVRGGGTHRSGQ
Sbjct: 41 HTNLRKNNRQPYAVSELA-----------GHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 89
Query: 187 GAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPE 246
GAFGNMCR GRMFAPT+ WRRWHR+VN Q+RYA+ SA+AAS++PALVMSKGH +++VPE
Sbjct: 90 GAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHCVEEVPE 149
Query: 247 FPLVVSDKIQEYKKTKQATIFLHRIKAWNDVLKVQSS 283
PLVV DK++ YKKTK+A L ++KAWND+ KV +S
Sbjct: 150 LPLVVEDKVESYKKTKEAVQLLKKLKAWNDIKKVYAS 186
>sp|P49691|RL4B_ARATH 60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1
SV=2
Length = 407
Score = 220 bits (561), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 104/143 (72%), Positives = 122/143 (85%), Gaps = 3/143 (2%)
Query: 19 ARPLITVYS-EKNEPTGQ--TVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGH 75
ARPL+TV + + T Q TVTLP V AP+RPD+VNFVH +S N RQPYAVSK AGH
Sbjct: 7 ARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGH 66
Query: 76 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQR 135
QTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCR GRMFAPT+IWRRWHR+VNVN +
Sbjct: 67 QTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMK 126
Query: 136 RYAMVSAIAASSVPALVMSKGHQ 158
R+A+VSAIAA++VPALVM++GH+
Sbjct: 127 RHAIVSAIAATAVPALVMARGHK 149
Score = 192 bits (489), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 99/170 (58%), Positives = 123/170 (72%), Gaps = 13/170 (7%)
Query: 116 MFAPTR--IWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAESWGTGRAVARI 173
M AP R I H +++ N R+ VS A GHQTSAESWGTGRAV+RI
Sbjct: 34 MTAPVRPDIVNFVHAQISNNSRQPYAVSKKA-----------GHQTSAESWGTGRAVSRI 82
Query: 174 PRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPAL 233
PRV GGGTHR+GQ AFGNMCR GRMFAPT+IWRRWHR+VNVN +R+A+VSAIAA++VPAL
Sbjct: 83 PRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPAL 142
Query: 234 VMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWNDVLKVQSS 283
VM++GH I++VPE PLVVSD + +KT A L +I A++D K ++S
Sbjct: 143 VMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNS 192
>sp|Q9SF40|RL4A_ARATH 60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2
SV=1
Length = 406
Score = 219 bits (558), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 102/143 (71%), Positives = 122/143 (85%), Gaps = 3/143 (2%)
Query: 19 ARPLITVYS-EKNEPTGQ--TVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGH 75
ARPL+T+ + + + T Q TV LP V AP+RPD+VNFVH +S N RQPYAVSK AGH
Sbjct: 6 ARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGH 65
Query: 76 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQR 135
QTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCR GRMFAPT+IWRRWHR+VNVN +
Sbjct: 66 QTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMK 125
Query: 136 RYAMVSAIAASSVPALVMSKGHQ 158
R+A+VSAIAA++VPALVM++GH+
Sbjct: 126 RHAIVSAIAATAVPALVMARGHK 148
Score = 193 bits (490), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/170 (58%), Positives = 123/170 (72%), Gaps = 13/170 (7%)
Query: 116 MFAPTR--IWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAESWGTGRAVARI 173
M AP R I H +++ N R+ VS A GHQTSAESWGTGRAV+RI
Sbjct: 33 MTAPVRPDIVNFVHAQISNNSRQPYAVSKKA-----------GHQTSAESWGTGRAVSRI 81
Query: 174 PRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPAL 233
PRV GGGTHR+GQ AFGNMCR GRMFAPT+IWRRWHR+VNVN +R+A+VSAIAA++VPAL
Sbjct: 82 PRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPAL 141
Query: 234 VMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWNDVLKVQSS 283
VM++GH I++VPE PLVVSD + +KT A L +I A++D K ++S
Sbjct: 142 VMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNS 191
>sp|P35679|RL4A_SCHPO 60S ribosomal protein L4-A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl4a PE=1 SV=2
Length = 363
Score = 212 bits (539), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 94/143 (65%), Positives = 120/143 (83%)
Query: 16 VGVARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGH 75
+ ARP +++YS+ + +T+ LP VFKAPIRPD+V VH ++KN RQPYAVS+ AGH
Sbjct: 1 MAAARPTVSIYSKDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGH 60
Query: 76 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQR 135
QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR+GRMFAPT+ WR+WH KVN N++
Sbjct: 61 QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEK 120
Query: 136 RYAMVSAIAASSVPALVMSKGHQ 158
RYA+ SA+AAS VP+L++++GH+
Sbjct: 121 RYAISSAVAASGVPSLLLARGHR 143
Score = 197 bits (501), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 97/168 (57%), Positives = 123/168 (73%), Gaps = 13/168 (7%)
Query: 118 APTR--IWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAESWGTGRAVARIPR 175
AP R + R H V N+R+ VS A GHQTSAESWGTGRA+ARIPR
Sbjct: 30 APIRPDLVRSVHTAVAKNKRQPYAVSEKA-----------GHQTSAESWGTGRALARIPR 78
Query: 176 VRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVM 235
V GGGTHRSGQ AFGNMCR+GRMFAPT+ WR+WH KVN N++RYA+ SA+AAS VP+L++
Sbjct: 79 VGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLL 138
Query: 236 SKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWNDVLKVQSS 283
++GH I+++PE PLVV D +Q ++KTK+A L IKA+ DV+KV +S
Sbjct: 139 ARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANS 186
>sp|Q9P784|RL4B_SCHPO 60S ribosomal protein L4-B OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl4b PE=3 SV=1
Length = 363
Score = 211 bits (536), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 93/143 (65%), Positives = 120/143 (83%)
Query: 16 VGVARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGH 75
+ ARP +++Y++ + +T+ LP VFKAPIRPD+V VH ++KN RQPYAVS+ AGH
Sbjct: 1 MAAARPTVSIYNKDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGH 60
Query: 76 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQR 135
QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR+GRMFAPT+ WR+WH KVN N++
Sbjct: 61 QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEK 120
Query: 136 RYAMVSAIAASSVPALVMSKGHQ 158
RYA+ SA+AAS VP+L++++GH+
Sbjct: 121 RYAIASAVAASGVPSLLLARGHR 143
Score = 198 bits (503), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 97/168 (57%), Positives = 123/168 (73%), Gaps = 13/168 (7%)
Query: 118 APTR--IWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAESWGTGRAVARIPR 175
AP R + R H V N+R+ VS A GHQTSAESWGTGRA+ARIPR
Sbjct: 30 APIRPDLVRSVHTAVAKNKRQPYAVSEKA-----------GHQTSAESWGTGRALARIPR 78
Query: 176 VRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVM 235
V GGGTHRSGQ AFGNMCR+GRMFAPT+ WR+WH KVN N++RYA+ SA+AAS VP+L++
Sbjct: 79 VGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLL 138
Query: 236 SKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWNDVLKVQSS 283
++GH I+++PE PLVV D +Q ++KTK+A L IKA+ DV+KV +S
Sbjct: 139 ARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANS 186
>sp|Q9XF97|RL4_PRUAR 60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1
Length = 408
Score = 210 bits (534), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/142 (74%), Positives = 123/142 (86%), Gaps = 3/142 (2%)
Query: 20 RPLITVYSEKNE---PTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQ 76
RPL+TV S + + QTV LP V KA IRPD+V FVH N+SKN RQPYAVSK AGHQ
Sbjct: 9 RPLVTVQSLEGDMATDQTQTVALPDVMKASIRPDIVTFVHSNISKNSRQPYAVSKKAGHQ 68
Query: 77 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRR 136
TSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCR GRMFAPT+IWRRWHRK+NVNQ+R
Sbjct: 69 TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKR 128
Query: 137 YAMVSAIAASSVPALVMSKGHQ 158
YA+VSAIAAS+VP+LV+++GH+
Sbjct: 129 YAVVSAIAASAVPSLVLARGHK 150
Score = 179 bits (455), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 109/128 (85%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
GHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCR GRMFAPT+IWRRWHRK+NVN
Sbjct: 66 GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVN 125
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWN 275
Q+RYA+VSAIAAS+VP+LV+++GH I+ VPE PLVVSD I+ ++T A L +I A++
Sbjct: 126 QKRYAVVSAIAASAVPSLVLARGHKIETVPELPLVVSDSIEGVEETSAALKVLKQIGAYS 185
Query: 276 DVLKVQSS 283
D K + S
Sbjct: 186 DAEKAKDS 193
>sp|P49669|RL4_TRYBB 60S ribosomal protein L4 OS=Trypanosoma brucei brucei GN=RPL4 PE=3
SV=1
Length = 374
Score = 202 bits (515), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 93/140 (66%), Positives = 117/140 (83%)
Query: 19 ARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTS 78
ARP ++VYS + T +LP+VF APIR DVV FVH N++KN RQPYAV++ +G + S
Sbjct: 3 ARPSVSVYSASEDKVVGTCSLPAVFTAPIRHDVVQFVHTNMAKNSRQPYAVNRLSGMKHS 62
Query: 79 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYA 138
ESWGTGRAVARIPR+ GGGT SG GAFGNMCR GRMFAPT+I+RRWHRK+N++Q+R+A
Sbjct: 63 TESWGTGRAVARIPRIHGGGTSMSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFA 122
Query: 139 MVSAIAASSVPALVMSKGHQ 158
+VSA+AASS+PALVMS+GH+
Sbjct: 123 VVSALAASSLPALVMSRGHK 142
Score = 181 bits (459), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 83/128 (64%), Positives = 105/128 (82%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
G + S ESWGTGRAVARIPR+ GGGT SG GAFGNMCR GRMFAPT+I+RRWHRK+N++
Sbjct: 58 GMKHSTESWGTGRAVARIPRIHGGGTSMSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLH 117
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWN 275
Q+R+A+VSA+AASS+PALVMS+GH I++V E PLVV D ++ Y+KTK+A FL + A +
Sbjct: 118 QKRFAVVSALAASSLPALVMSRGHKIENVAEVPLVVEDGVRAYEKTKEAMTFLKTVGAID 177
Query: 276 DVLKVQSS 283
DV +V S
Sbjct: 178 DVNRVNDS 185
>sp|O02056|RL4_CAEEL 60S ribosomal protein L4 OS=Caenorhabditis elegans GN=rpl-4 PE=1
SV=3
Length = 345
Score = 201 bits (512), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 92/139 (66%), Positives = 113/139 (81%)
Query: 19 ARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTS 78
ARPL+TVY EK E T + LP+VF+ PIRPD+V+F+ + +N RQ +AV+ AG Q S
Sbjct: 3 ARPLVTVYDEKYEATQSQIRLPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHS 62
Query: 79 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYA 138
AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR G MFAP +++RRWHR VN+ Q+RYA
Sbjct: 63 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYA 122
Query: 139 MVSAIAASSVPALVMSKGH 157
+ SAIAAS +PAL+ ++GH
Sbjct: 123 VSSAIAASGIPALLQARGH 141
Score = 189 bits (479), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 86/128 (67%), Positives = 105/128 (82%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
G Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR G MFAP +++RRWHR VN+
Sbjct: 58 GKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIA 117
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWN 275
Q+RYA+ SAIAAS +PAL+ ++GH+I V E PLVVSDK++ ++KTK+A +FL R W
Sbjct: 118 QKRYAVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWA 177
Query: 276 DVLKVQSS 283
D+ KV +S
Sbjct: 178 DIEKVYNS 185
>sp|Q54Z69|RL4_DICDI 60S ribosomal protein L4 OS=Dictyostelium discoideum GN=rpl4 PE=1
SV=1
Length = 369
Score = 189 bits (481), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 95/141 (67%), Positives = 115/141 (81%), Gaps = 1/141 (0%)
Query: 20 RPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSA 79
RP + V+ +N+ G+ V LP+V PIRPD+VNFVH NL+KN RQ Y + AG QTSA
Sbjct: 4 RPFVQVFDAQNKVVGK-VKLPNVLTTPIRPDLVNFVHTNLNKNARQAYGAAPYAGEQTSA 62
Query: 80 ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAM 139
ESWGTGRAVARIPRV G GTHRSGQGAFGNMCR GRM+ P + WRRW+RKVNVNQ+RYA+
Sbjct: 63 ESWGTGRAVARIPRVPGSGTHRSGQGAFGNMCRGGRMYGPNKTWRRWNRKVNVNQKRYAV 122
Query: 140 VSAIAASSVPALVMSKGHQTS 160
VSA+AAS+VPALVM++GH+ +
Sbjct: 123 VSALAASAVPALVMARGHRIN 143
Score = 164 bits (414), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 85/129 (65%), Positives = 103/129 (79%), Gaps = 1/129 (0%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
G QTSAESWGTGRAVARIPRV G GTHRSGQGAFGNMCR GRM+ P + WRRW+RKVNVN
Sbjct: 57 GEQTSAESWGTGRAVARIPRVPGSGTHRSGQGAFGNMCRGGRMYGPNKTWRRWNRKVNVN 116
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDK-IQEYKKTKQATIFLHRIKAW 274
Q+RYA+VSA+AAS+VPALVM++GH I + E PLV++++ + +KTK A L +I A+
Sbjct: 117 QKRYAVVSALAASAVPALVMARGHRINGINEVPLVIANESVDTLQKTKAAVELLKKINAY 176
Query: 275 NDVLKVQSS 283
DV KV S
Sbjct: 177 ADVTKVIDS 185
>sp|P10664|RL4A_YEAST 60S ribosomal protein L4-A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL4A PE=1 SV=4
Length = 362
Score = 160 bits (405), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 92/141 (65%), Positives = 116/141 (82%)
Query: 18 VARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQT 77
++RP +TV+S E T + LP+VF APIRPD+V+ V +++KN RQ YAVS+ AGHQT
Sbjct: 1 MSRPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQT 60
Query: 78 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRY 137
SAESWGTGRAVARIPRV GGGT RSGQGAFGNMCR GRMFAPT+ WR+W+ KVN N++RY
Sbjct: 61 SAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRY 120
Query: 138 AMVSAIAASSVPALVMSKGHQ 158
A SAIAA++V +LV+++GH+
Sbjct: 121 ATASAIAATAVASLVLARGHR 141
Score = 134 bits (338), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/147 (57%), Positives = 107/147 (72%), Gaps = 11/147 (7%)
Query: 130 VNVNQRRYAMVSAIAASSVPALVMSKGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAF 189
VN N+R+ VS A GHQTSAESWGTGRAVARIPRV GGGT RSGQGAF
Sbjct: 42 VNKNKRQAYAVSEKA-----------GHQTSAESWGTGRAVARIPRVGGGGTGRSGQGAF 90
Query: 190 GNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPL 249
GNMCR GRMFAPT+ WR+W+ KVN N++RYA SAIAA++V +LV+++GH ++ +PE PL
Sbjct: 91 GNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPL 150
Query: 250 VVSDKIQEYKKTKQATIFLHRIKAWND 276
VVS ++ +KTK+A L + A +D
Sbjct: 151 VVSTDLESIQKTKEAVAALKAVGAHSD 177
>sp|P49626|RL4B_YEAST 60S ribosomal protein L4-B OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL4B PE=1 SV=2
Length = 362
Score = 160 bits (405), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 92/141 (65%), Positives = 116/141 (82%)
Query: 18 VARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQT 77
++RP +TV+S E T + LP+VF APIRPD+V+ V +++KN RQ YAVS+ AGHQT
Sbjct: 1 MSRPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQT 60
Query: 78 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRY 137
SAESWGTGRAVARIPRV GGGT RSGQGAFGNMCR GRMFAPT+ WR+W+ KVN N++RY
Sbjct: 61 SAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRY 120
Query: 138 AMVSAIAASSVPALVMSKGHQ 158
A SAIAA++V +LV+++GH+
Sbjct: 121 ATASAIAATAVASLVLARGHR 141
Score = 134 bits (338), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/147 (57%), Positives = 107/147 (72%), Gaps = 11/147 (7%)
Query: 130 VNVNQRRYAMVSAIAASSVPALVMSKGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAF 189
VN N+R+ VS A GHQTSAESWGTGRAVARIPRV GGGT RSGQGAF
Sbjct: 42 VNKNKRQAYAVSEKA-----------GHQTSAESWGTGRAVARIPRVGGGGTGRSGQGAF 90
Query: 190 GNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPL 249
GNMCR GRMFAPT+ WR+W+ KVN N++RYA SAIAA++V +LV+++GH ++ +PE PL
Sbjct: 91 GNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPL 150
Query: 250 VVSDKIQEYKKTKQATIFLHRIKAWND 276
VVS ++ +KTK+A L + A +D
Sbjct: 151 VVSTDLESIQKTKEAVAALKAVGAHSD 177
>sp|P0DJ55|RL4_TETTS 60S ribosomal protein L4 OS=Tetrahymena thermophila (strain SB210)
GN=RPL4 PE=1 SV=1
Length = 410
Score = 155 bits (391), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 78/128 (60%), Positives = 99/128 (77%), Gaps = 2/128 (1%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
GH SAESWGTGRAVARIPRV G GTHRSGQ AFGN CR GRMFAP + +RR HR+VNVN
Sbjct: 66 GH--SAESWGTGRAVARIPRVGGSGTHRSGQAAFGNQCRKGRMFAPLKTYRRVHRRVNVN 123
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWN 275
Q+R+A+ +A+AAS++ LV ++GH I +V E P V D ++ Y+KTKQA FL R+ A++
Sbjct: 124 QKRHAVAAALAASALVPLVFARGHRISNVQELPYVFDDSVESYEKTKQAVAFLKRVGAYD 183
Query: 276 DVLKVQSS 283
DVL+V +
Sbjct: 184 DVLRVAET 191
Score = 147 bits (372), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 101/223 (45%), Positives = 132/223 (59%), Gaps = 35/223 (15%)
Query: 18 VARPLITVYS--EKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVS----K 71
+RP I V+ E N+ T +TLP+VF APIR D+V+ V +L+KN +Q V
Sbjct: 2 TSRPQIHVHDAKEANKQTATKLTLPAVFTAPIRTDIVHKVFTDLNKNRKQASGVKISTRG 61
Query: 72 DAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVN 131
AG SAESWGTGRAVARIPRV G GTHRSGQ AFGN CR GRMFAP + +RR HR+VN
Sbjct: 62 TAGMGHSAESWGTGRAVARIPRVGGSGTHRSGQAAFGNQCRKGRMFAPLKTYRRVHRRVN 121
Query: 132 VNQRRYAMVSAIAASSVPALVMSKGH------------QTSAESW-GTGRAVARIPRVRG 178
VNQ+R+A+ +A+AAS++ LV ++GH S ES+ T +AVA + RV
Sbjct: 122 VNQKRHAVAAALAASALVPLVFARGHRISNVQELPYVFDDSVESYEKTKQAVAFLKRV-- 179
Query: 179 GGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAM 221
GA+ ++ R A T+ R K + RRY +
Sbjct: 180 --------GAYDDVLR----VAETKALRAGQGK--LRNRRYKL 208
>sp|O15594|RL4_ENTHI 60S ribosomal protein L4 (Fragments) OS=Entamoeba histolytica
GN=RPL4 PE=2 SV=2
Length = 245
Score = 141 bits (355), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 75/139 (53%), Positives = 92/139 (66%), Gaps = 8/139 (5%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
G Q SA SWGTGRAVARIPR+ G G+ R+GQGAFGNM R G MF+P + +R+W RK
Sbjct: 5 GKQHSAISWGTGRAVARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTPKQ 64
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLV--------VSDKIQEYKKTKQATIF 267
RR+A+ S IAAS+VPALV ++GH I VP+ P V S I KKTKQA
Sbjct: 65 MRRFAVASCIAASAVPALVSARGHHIAGVPQLPSVSFLQPQFHSSKSISVIKKTKQAVYL 124
Query: 268 LHRIKAWNDVLKVQSSGTF 286
L +I A++DVLKV +S T
Sbjct: 125 LKKINAYSDVLKVIASKTI 143
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 65/85 (76%)
Query: 73 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNV 132
AG Q SA SWGTGRAVARIPR+ G G+ R+GQGAFGNM R G MF+P + +R+W RK
Sbjct: 4 AGKQHSAISWGTGRAVARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTPK 63
Query: 133 NQRRYAMVSAIAASSVPALVMSKGH 157
RR+A+ S IAAS+VPALV ++GH
Sbjct: 64 QMRRFAVASCIAASAVPALVSARGH 88
>sp|A5UL88|RL4_METS3 50S ribosomal protein L4P OS=Methanobrevibacter smithii (strain PS
/ ATCC 35061 / DSM 861) GN=rpl4p PE=3 SV=1
Length = 254
Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 74/127 (58%), Gaps = 5/127 (3%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
G +TSA+ WG+GR AR+PR++ G + AF M GR PTR + H K+N+
Sbjct: 53 GKRTSAKGWGSGRGTARVPRIKNGS-----KAAFVPMAVGGRRAHPTRAEKNHHEKINIK 107
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWN 275
+RR+A+ SA+AA++ LV ++GH + D+ + P++V D I K TKQ + ++
Sbjct: 108 ERRFAIRSAVAATANKELVENRGHRLGDLEQVPIIVEDDICSVKTTKQTREIFQNLGVYD 167
Query: 276 DVLKVQS 282
D+ + +
Sbjct: 168 DITRAKE 174
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 77/135 (57%), Gaps = 6/135 (4%)
Query: 24 TVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWG 83
VYS + E + + LP++F RPD++ + QP+ +AG +TSA+ WG
Sbjct: 4 NVYSMEGE-VKEEIELPAIFNEEYRPDLIKRAVISAQTARVQPWGNDPEAGKRTSAKGWG 62
Query: 84 TGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAI 143
+GR AR+PR++ G + AF M GR PTR + H K+N+ +RR+A+ SA+
Sbjct: 63 SGRGTARVPRIKNG-----SKAAFVPMAVGGRRAHPTRAEKNHHEKINIKERRFAIRSAV 117
Query: 144 AASSVPALVMSKGHQ 158
AA++ LV ++GH+
Sbjct: 118 AATANKELVENRGHR 132
>sp|Q9YFM1|RL4_AERPE 50S ribosomal protein L4P OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rpl4p PE=3
SV=3
Length = 272
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 89/177 (50%), Gaps = 9/177 (5%)
Query: 22 LITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAES 81
++ VY E+ +V LP +F+ P+R D++ + QP AG +TSA S
Sbjct: 15 IVPVYDERGG-EKDSVVLPQIFRFPVRKDLIRRAFLSEFTARLQPKGRDPMAGKRTSAVS 73
Query: 82 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVS 141
G GR VAR+PR++G S + A NM R GR P R+ + +N ++R A +S
Sbjct: 74 LGVGRGVARVPRIKG-----SLRAALVNMARGGRAAHPPRVEKVLKEYINKKEKRLATIS 128
Query: 142 AIAASSVPALVMSKGHQTSAESWGT---GRAVARIPRVRGGGTHRSGQGAFGNMCRA 195
AI+A+S LV +GH+ SAE+ +A+I R + G + ++ RA
Sbjct: 129 AISATSREDLVRQRGHRFSAETLPIVLDSSVLAKISTAREARSLLESVGVYEDVLRA 185
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 67/128 (52%), Gaps = 7/128 (5%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
G +TSA S G GR VAR+PR++G S + A NM R GR P R+ + +N
Sbjct: 66 GKRTSAVSLGVGRGVARVPRIKG-----SLRAALVNMARGGRAAHPPRVEKVLKEYINKK 120
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVV-SDKIQEYKKTKQATIFLHRIKAW 274
++R A +SAI+A+S LV +GH P+V+ S + + ++A L + +
Sbjct: 121 EKRLATISAISATSREDLVRQRGHRFS-AETLPIVLDSSVLAKISTAREARSLLESVGVY 179
Query: 275 NDVLKVQS 282
DVL+ +
Sbjct: 180 EDVLRAKE 187
>sp|Q9UXA6|RL4_SULSO 50S ribosomal protein L4P OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rpl4p PE=3 SV=1
Length = 267
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 75/127 (59%), Gaps = 5/127 (3%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
G +TSAES+G +AR+PRV+ SG+ A GR+ P + ++ + NV
Sbjct: 60 GKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLAFPPSVNKKLAEEANVK 114
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWN 275
++R A++SA++A++ A V ++GH+ +D FP+VV+D I K T + FL +I ++
Sbjct: 115 EKRLAVISALSATADIAFVRARGHVFKDSVRFPIVVTDDIVNLKTTSEVEEFLKKIGVYD 174
Query: 276 DVLKVQS 282
DV +V+
Sbjct: 175 DVERVKE 181
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 68/123 (55%), Gaps = 5/123 (4%)
Query: 35 QTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVARIPRV 94
+ V LP +F P+R D++ V + QP +AG +TSAES+G +AR+PRV
Sbjct: 21 KEVELPIIFSFPVRKDLIRRVFIAEFTHSLQPKGRDPNAGKRTSAESFGINLGMARVPRV 80
Query: 95 RGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMS 154
+ SG+ A GR+ P + ++ + NV ++R A++SA++A++ A V +
Sbjct: 81 KN-----SGEAALAPNTVGGRLAFPPSVNKKLAEEANVKEKRLAVISALSATADIAFVRA 135
Query: 155 KGH 157
+GH
Sbjct: 136 RGH 138
>sp|Q2NFV7|RL4_METST 50S ribosomal protein L4P OS=Methanosphaera stadtmanae (strain DSM
3091) GN=rpl4p PE=3 SV=1
Length = 259
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 76/138 (55%), Gaps = 6/138 (4%)
Query: 23 ITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESW 82
I VYS K + T + + LP +F+ RPDV+ ++ QP+ AG +T+AES+
Sbjct: 4 INVYSLKGDIT-EEIELPEIFEEEYRPDVIKRAVISMQTARIQPWGTDPMAGKRTTAESF 62
Query: 83 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSA 142
G+GR A +PRV+G S + AF GR P R+ +H K+N +R A+ SA
Sbjct: 63 GSGRGAAMVPRVKG-----SSKAAFVPQAIGGRKAHPPRVNTIYHEKINKKERTLAIRSA 117
Query: 143 IAASSVPALVMSKGHQTS 160
IAA++ LV +GHQ S
Sbjct: 118 IAATANKELVEQRGHQVS 135
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 71/126 (56%), Gaps = 5/126 (3%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
G +T+AES+G+GR A +PRV+G S + AF GR P R+ +H K+N
Sbjct: 54 GKRTTAESFGSGRGAAMVPRVKG-----SSKAAFVPQAIGGRKAHPPRVNTIYHEKINKK 108
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWN 275
+R A+ SAIAA++ LV +GH + ++ + P V+ D+I+ K TK+ + +
Sbjct: 109 ERTLAIRSAIAATANKELVEQRGHQVSELEQIPFVIDDEIETVKTTKETREIFKDLGIMD 168
Query: 276 DVLKVQ 281
D+++ +
Sbjct: 169 DIVRAK 174
>sp|O26111|RL4_METTH 50S ribosomal protein L4P OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=rpl4p PE=3 SV=1
Length = 254
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 74/127 (58%), Gaps = 5/127 (3%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
G +TSA+S+G GR VA +PR++ G + AF GR P R + +H ++N
Sbjct: 53 GKRTSAQSYGAGRGVAMVPRIKNGS-----RAAFVPQAVGGRRAHPPRPQKNYHERINRK 107
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWN 275
+RR A+ SA+AA++ LV ++GH I++VP+ PLVV D++ K+T ++ +
Sbjct: 108 ERRLAIRSAVAATARKDLVEARGHRIENVPQLPLVVDDELSMIKRTADTREVFRKLGIMD 167
Query: 276 DVLKVQS 282
D+++ +
Sbjct: 168 DIVRARE 174
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 6/138 (4%)
Query: 23 ITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESW 82
I VYS + E + + LP +F RPDV+ + QP+ AG +TSA+S+
Sbjct: 3 IKVYSLEGEAIDE-MELPEIFNEEFRPDVIKRAVLSAQTARVQPWGPDPMAGKRTSAQSY 61
Query: 83 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSA 142
G GR VA +PR++ G + AF GR P R + +H ++N +RR A+ SA
Sbjct: 62 GAGRGVAMVPRIKNG-----SRAAFVPQAVGGRRAHPPRPQKNYHERINRKERRLAIRSA 116
Query: 143 IAASSVPALVMSKGHQTS 160
+AA++ LV ++GH+
Sbjct: 117 VAATARKDLVEARGHRIE 134
>sp|C3MVH9|RL4_SULIM 50S ribosomal protein L4P OS=Sulfolobus islandicus (strain M.14.25
/ Kamchatka #1) GN=rpl4p PE=3 SV=1
Length = 267
Score = 84.3 bits (207), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 73/127 (57%), Gaps = 5/127 (3%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
G +TSAES+G +AR+PRV+ SG+ A GR+ P + ++ +VN
Sbjct: 60 GKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDK 114
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWN 275
+++ A++SA++A++ V ++GH+ +D FP+VV+D I K + FL +I ++
Sbjct: 115 EKQLAVISALSATADTVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYD 174
Query: 276 DVLKVQS 282
DV +V+
Sbjct: 175 DVKRVKE 181
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 5/134 (3%)
Query: 24 TVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWG 83
+V +K+ + V LP +F P+R D++ V + QP AG +TSAES+G
Sbjct: 10 SVILDKDGNKVKEVELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFG 69
Query: 84 TGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAI 143
+AR+PRV+ SG+ A GR+ P + ++ +VN +++ A++SA+
Sbjct: 70 INLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISAL 124
Query: 144 AASSVPALVMSKGH 157
+A++ V ++GH
Sbjct: 125 SATADTVFVKARGH 138
>sp|C4KHF7|RL4_SULIK 50S ribosomal protein L4P OS=Sulfolobus islandicus (strain M.16.4 /
Kamchatka #3) GN=rpl4p PE=3 SV=1
Length = 267
Score = 84.3 bits (207), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 73/127 (57%), Gaps = 5/127 (3%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
G +TSAES+G +AR+PRV+ SG+ A GR+ P + ++ +VN
Sbjct: 60 GKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDK 114
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWN 275
+++ A++SA++A++ V ++GH+ +D FP+VV+D I K + FL +I ++
Sbjct: 115 EKQLAVISALSATADTVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYD 174
Query: 276 DVLKVQS 282
DV +V+
Sbjct: 175 DVKRVKE 181
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 5/134 (3%)
Query: 24 TVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWG 83
+V +K+ + V LP +F P+R D++ V + QP AG +TSAES+G
Sbjct: 10 SVILDKDGNKVKEVELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFG 69
Query: 84 TGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAI 143
+AR+PRV+ SG+ A GR+ P + ++ +VN +++ A++SA+
Sbjct: 70 INLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISAL 124
Query: 144 AASSVPALVMSKGH 157
+A++ V ++GH
Sbjct: 125 SATADTVFVKARGH 138
>sp|C3N5S8|RL4_SULIA 50S ribosomal protein L4P OS=Sulfolobus islandicus (strain M.16.27)
GN=rpl4p PE=3 SV=1
Length = 267
Score = 84.3 bits (207), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 73/127 (57%), Gaps = 5/127 (3%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
G +TSAES+G +AR+PRV+ SG+ A GR+ P + ++ +VN
Sbjct: 60 GKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDK 114
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWN 275
+++ A++SA++A++ V ++GH+ +D FP+VV+D I K + FL +I ++
Sbjct: 115 EKQLAVISALSATADTVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYD 174
Query: 276 DVLKVQS 282
DV +V+
Sbjct: 175 DVKRVKE 181
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 5/134 (3%)
Query: 24 TVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWG 83
+V +K+ + V LP +F P+R D++ V + QP AG +TSAES+G
Sbjct: 10 SVILDKDGNKVKEVELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFG 69
Query: 84 TGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAI 143
+AR+PRV+ SG+ A GR+ P + ++ +VN +++ A++SA+
Sbjct: 70 INLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISAL 124
Query: 144 AASSVPALVMSKGH 157
+A++ V ++GH
Sbjct: 125 SATADTVFVKARGH 138
>sp|C3NEE4|RL4_SULIY 50S ribosomal protein L4P OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=rpl4p PE=3 SV=1
Length = 267
Score = 84.3 bits (207), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 73/127 (57%), Gaps = 5/127 (3%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
G +TSAES+G +AR+PRV+ SG+ A GR+ P + ++ +VN
Sbjct: 60 GKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDK 114
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWN 275
+++ A++SA++A++ V ++GH+ +D FP+VV+D I K + FL +I ++
Sbjct: 115 EKQLAVISALSATADKVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYD 174
Query: 276 DVLKVQS 282
DV +V+
Sbjct: 175 DVKRVKE 181
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 5/134 (3%)
Query: 24 TVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWG 83
+V +K+ + V LP +F P+R D++ V + QP AG +TSAES+G
Sbjct: 10 SVILDKDGNKVKEVELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFG 69
Query: 84 TGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAI 143
+AR+PRV+ SG+ A GR+ P + ++ +VN +++ A++SA+
Sbjct: 70 INLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISAL 124
Query: 144 AASSVPALVMSKGH 157
+A++ V ++GH
Sbjct: 125 SATADKVFVKARGH 138
>sp|C3NHA8|RL4_SULIN 50S ribosomal protein L4P OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=rpl4p PE=3 SV=1
Length = 267
Score = 84.3 bits (207), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 73/127 (57%), Gaps = 5/127 (3%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
G +TSAES+G +AR+PRV+ SG+ A GR+ P + ++ +VN
Sbjct: 60 GKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDK 114
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWN 275
+++ A++SA++A++ V ++GH+ +D FP+VV+D I K + FL +I ++
Sbjct: 115 EKQLAVISALSATADKVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYD 174
Query: 276 DVLKVQS 282
DV +V+
Sbjct: 175 DVKRVKE 181
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 5/134 (3%)
Query: 24 TVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWG 83
+V +K+ + V LP +F P+R D++ V + QP AG +TSAES+G
Sbjct: 10 SVILDKDGNKVKEVELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFG 69
Query: 84 TGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAI 143
+AR+PRV+ SG+ A GR+ P + ++ +VN +++ A++SA+
Sbjct: 70 INLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISAL 124
Query: 144 AASSVPALVMSKGH 157
+A++ V ++GH
Sbjct: 125 SATADKVFVKARGH 138
>sp|C3MQ60|RL4_SULIL 50S ribosomal protein L4P OS=Sulfolobus islandicus (strain L.S.2.15
/ Lassen #1) GN=rpl4p PE=3 SV=1
Length = 267
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 72/127 (56%), Gaps = 5/127 (3%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
G +TSAES+G +AR+PRV+ SG+ A GR+ P + ++ + N
Sbjct: 60 GKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEANDK 114
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWN 275
+++ A++SA++A++ V ++GH+ +D FP+VV+D I K + FL +I ++
Sbjct: 115 EKQLAVISALSATADKVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYD 174
Query: 276 DVLKVQS 282
DV +V+
Sbjct: 175 DVKRVKE 181
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 5/134 (3%)
Query: 24 TVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWG 83
+V +K+ + V LP +F P+R D++ V + QP AG +TSAES+G
Sbjct: 10 SVILDKDGNKVKEVELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFG 69
Query: 84 TGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAI 143
+AR+PRV+ SG+ A GR+ P + ++ + N +++ A++SA+
Sbjct: 70 INLGMARVPRVKN-----SGEAALAPNTVGGRLTFPPSVDKKLVEEANDKEKQLAVISAL 124
Query: 144 AASSVPALVMSKGH 157
+A++ V ++GH
Sbjct: 125 SATADKVFVKARGH 138
>sp|Q8PV49|RL4_METMA 50S ribosomal protein L4P OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=rpl4p PE=3 SV=1
Length = 253
Score = 81.3 bits (199), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 70/133 (52%), Gaps = 8/133 (6%)
Query: 33 TGQTV---TLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVA 89
TG+TV LP+VF A RPD++ N QPY S AG +TSA WG+GR V+
Sbjct: 10 TGRTVGEIELPAVFDADYRPDLIKKAVLAAQANRLQPYGPSLYAGMKTSATGWGSGRGVS 69
Query: 90 RIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVP 149
+PR++ S + A + GR P + KVN +RRYA+ SAIAA+ P
Sbjct: 70 HVPRLKN-----SSRAARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATIDP 124
Query: 150 ALVMSKGHQTSAE 162
LV +GH AE
Sbjct: 125 TLVNLRGHIFEAE 137
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 68/126 (53%), Gaps = 7/126 (5%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
G +TSA WG+GR V+ +PR++ S + A + GR P + KVN
Sbjct: 54 GMKTSATGWGSGRGVSHVPRLKN-----SSRAARVPHAKGGRRAHPPKPEADRSEKVNTK 108
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWN 275
+RRYA+ SAIAA+ P LV +GH+ + E P+V + ++ ++TKQ FL +
Sbjct: 109 ERRYAIRSAIAATIDPTLVNLRGHIFE--AELPIVAVNDLENLERTKQVIEFLEAAGLYE 166
Query: 276 DVLKVQ 281
DVL+ +
Sbjct: 167 DVLRAK 172
>sp|Q18GF0|RL4_HALWD 50S ribosomal protein L4P OS=Haloquadratum walsbyi (strain DSM
16790) GN=rpl4p PE=3 SV=1
Length = 248
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 7/125 (5%)
Query: 34 GQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVARIPR 93
T+ LP+VF+ P RPDV+ N +QPY AG +T AES+G+GR +A +PR
Sbjct: 13 ADTLELPAVFETPYRPDVIERAVVAAQANRKQPYGADPYAGMRTPAESFGSGRGMAHVPR 72
Query: 94 VRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVM 153
+GQ +GR P + + + VN +R+ A SA+AA++ P+ V
Sbjct: 73 -------ENGQARRVPQAVSGRKAHPPKAEKDQSKSVNTKERKLAFQSAVAATADPSQVE 125
Query: 154 SKGHQ 158
+GHQ
Sbjct: 126 ERGHQ 130
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 7/124 (5%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
G +T AES+G+GR +A +PR +GQ +GR P + + + VN
Sbjct: 53 GMRTPAESFGSGRGMAHVPR-------ENGQARRVPQAVSGRKAHPPKAEKDQSKSVNTK 105
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWN 275
+R+ A SA+AA++ P+ V +GH ++ E PLVVSD+ +E KT++ L +
Sbjct: 106 ERKLAFQSAVAATADPSQVEERGHQFENDVELPLVVSDEFEELIKTQEVVDVLESLGVHA 165
Query: 276 DVLK 279
D+++
Sbjct: 166 DIVR 169
>sp|Q8ZW51|RL4_PYRAE 50S ribosomal protein L4P OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=rpl4p PE=3 SV=1
Length = 283
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 78/143 (54%), Gaps = 4/143 (2%)
Query: 136 RYAMVSAIAASSVPALVMS-KGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR 194
R A +SA++A P V G + S ES+G G +ARIPR +G R G F R
Sbjct: 58 RRAYLSALSARFQPKGVYEGAGKEHSCESFGVGLGIARIPRYKGSLWPR---GCFAPNTR 114
Query: 195 AGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDK 254
GR P ++ ++ H ++N +++ A+ SAIAA++ + V ++GH+++ VP P+VV
Sbjct: 115 GGRRAHPPKVEKKLHEEINKKEKKLAIRSAIAATAYRSWVAARGHVVEKVPSLPVVVVGD 174
Query: 255 IQEYKKTKQATIFLHRIKAWNDV 277
++ + K+A + W DV
Sbjct: 175 AEKINRAKEAKKLFEALGLWPDV 197
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Query: 36 TVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVARIPRVR 95
+ P F PIRPD++ + + QP V + AG + S ES+G G +ARIPR +
Sbjct: 41 DIEAPLHFLEPIRPDLIRRAYLSALSARFQPKGVYEGAGKEHSCESFGVGLGIARIPRYK 100
Query: 96 GGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSK 155
G R G F R GR P ++ ++ H ++N +++ A+ SAIAA++ + V ++
Sbjct: 101 GSLWPR---GCFAPNTRGGRRAHPPKVEKKLHEEINKKEKKLAIRSAIAATAYRSWVAAR 157
Query: 156 GH 157
GH
Sbjct: 158 GH 159
>sp|Q46G96|RL4_METBF 50S ribosomal protein L4P OS=Methanosarcina barkeri (strain Fusaro
/ DSM 804) GN=rpl4p PE=3 SV=1
Length = 253
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 67/126 (53%), Gaps = 7/126 (5%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
G +TSA WG+GR + +PR+ S + A R GR P + KVN
Sbjct: 54 GMETSARGWGSGRGTSHVPRLVN-----SSRAARVPHARGGRRAHPPKPEADRSEKVNTK 108
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWN 275
+RRYA+ SAIAA+ P LV +GH+ + E P+V + +++ KTKQ FL I +
Sbjct: 109 ERRYAIRSAIAATRDPTLVSLRGHIFE--AELPIVTENALEDLDKTKQVIEFLQAIGVYE 166
Query: 276 DVLKVQ 281
DVL+ +
Sbjct: 167 DVLRAK 172
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 37 VTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVARIPRVRG 96
+ LP VF RPD++ N QPY AG +TSA WG+GR + +PR+
Sbjct: 17 IELPDVFDVDYRPDLIKKAVLAAQANRLQPYGPRLYAGMETSARGWGSGRGTSHVPRLVN 76
Query: 97 GGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKG 156
S + A R GR P + KVN +RRYA+ SAIAA+ P LV +G
Sbjct: 77 -----SSRAARVPHARGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATRDPTLVSLRG 131
Query: 157 HQTSAE 162
H AE
Sbjct: 132 HIFEAE 137
>sp|Q8TRU6|RL4_METAC 50S ribosomal protein L4P OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rpl4p PE=3
SV=1
Length = 253
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 65/126 (51%), Gaps = 5/126 (3%)
Query: 37 VTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVARIPRVRG 96
V LP+VF A RPD++ N QPY +G +TSA WG+GR V+ +PR+
Sbjct: 17 VELPAVFDADYRPDLIKKAVLAAQANRLQPYGPRLYSGMETSARGWGSGRGVSHVPRLVN 76
Query: 97 GGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKG 156
S + A + GR P + KVN +RRYA+ SAIAA++ P LV +G
Sbjct: 77 -----SSRAARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATTDPTLVSLRG 131
Query: 157 HQTSAE 162
H AE
Sbjct: 132 HIFEAE 137
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 7/129 (5%)
Query: 153 MSKGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKV 212
+ G +TSA WG+GR V+ +PR+ S + A + GR P + KV
Sbjct: 51 LYSGMETSARGWGSGRGVSHVPRLVN-----SSRAARVPHAKGGRRAHPPKPEADRSEKV 105
Query: 213 NVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIK 272
N +RRYA+ SAIAA++ P LV +GH+ + E P+V + ++ ++TKQ FL
Sbjct: 106 NTKERRYAIRSAIAATTDPTLVSLRGHIFE--AELPIVAVNDLESLERTKQVIEFLEAAG 163
Query: 273 AWNDVLKVQ 281
+ DVL+ +
Sbjct: 164 LYEDVLRAK 172
>sp|A3CSZ8|RL4_METMJ 50S ribosomal protein L4P OS=Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1) GN=rpl4p PE=3 SV=1
Length = 249
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 5/121 (4%)
Query: 37 VTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVARIPRVRG 96
+ LP +F+ RPD++ L QP+ + AG +TSAESWG+GR A++PR++
Sbjct: 16 IDLPEIFREEYRPDLIKRAVLALQSTRFQPHGTNPYAGMRTSAESWGSGRGAAQVPRLKN 75
Query: 97 GGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKG 156
G A G GR P ++ + +++N ++R A+ SA+AAS+ P LV +G
Sbjct: 76 GSRVARVPQATG-----GRAAHPPKVEKILVKEINRKEKRKALRSAVAASTYPDLVRERG 130
Query: 157 H 157
H
Sbjct: 131 H 131
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 70/128 (54%), Gaps = 7/128 (5%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
G +TSAESWG+GR A++PR++ G A G GR P ++ + +++N
Sbjct: 53 GMRTSAESWGSGRGAAQVPRLKNGSRVARVPQATG-----GRAAHPPKVEKILVKEINRK 107
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWN 275
++R A+ SA+AAS+ P LV +GH+ + + PLV D+ +E +T L + +
Sbjct: 108 EKRKALRSAVAASTYPDLVRERGHLFEG--DLPLVFEDRFEEVTRTGDVIAALTALGVYA 165
Query: 276 DVLKVQSS 283
DV + + S
Sbjct: 166 DVERAKGS 173
>sp|Q12ZV0|RL4_METBU 50S ribosomal protein L4P OS=Methanococcoides burtonii (strain DSM
6242) GN=rpl4p PE=3 SV=1
Length = 253
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 79/160 (49%), Gaps = 6/160 (3%)
Query: 37 VTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVARIPRVRG 96
+ LP VF RPD++ + N QPY AG QTSA SWG+GR VA++PR+
Sbjct: 17 IALPEVFSEIFRPDLIKKAVLSAQANRLQPYGTKLYAGMQTSAHSWGSGRGVAQVPRISN 76
Query: 97 GGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKG 156
G A G GR P + K+N ++R A+ SAIAA+ LV ++G
Sbjct: 77 GSRVARIPQAVG-----GRRAHPPKTETDRTEKINKKEKRLAVRSAIAATIDADLVKARG 131
Query: 157 HQTSAE-SWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRA 195
H+ +AE + A+ + +++ + G + ++ RA
Sbjct: 132 HKFTAEVPFVADDAIEGLVKIKEVISFLQAAGLYDDIIRA 171
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
G QTSA SWG+GR VA++PR+ G A G GR P + K+N
Sbjct: 54 GMQTSAHSWGSGRGVAQVPRISNGSRVARIPQAVG-----GRRAHPPKTETDRTEKINKK 108
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWN 275
++R A+ SAIAA+ LV ++GH E P V D I+ K K+ FL ++
Sbjct: 109 EKRLAVRSAIAATIDADLVKARGHKF--TAEVPFVADDAIEGLVKIKEVISFLQAAGLYD 166
Query: 276 DVLKVQS 282
D+++ +
Sbjct: 167 DIIRAKE 173
>sp|C5A285|RL4_THEGJ 50S ribosomal protein L4P OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=rpl4p PE=3 SV=1
Length = 255
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 4/122 (3%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
G + E+ G G +AR+ R++ AF R GR P ++ + +N
Sbjct: 53 GKRRVTENIGKGHGMARVERIKTPPRF----AAFVPFARGGRRTHPPKVEKIIWEDINKK 108
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWN 275
+RR A++SAIAA++ P LV ++GH++ +VP FPLVV D +Q+ KT Q ++ W+
Sbjct: 109 ERRLAIMSAIAATANPDLVRARGHVVDNVPAFPLVVVDDLQKVFKTAQTREIFKKLGIWD 168
Query: 276 DV 277
D+
Sbjct: 169 DI 170
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 5/135 (3%)
Query: 23 ITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESW 82
+ V++ + EP + + LP VF P RPD++ + QP AG + E+
Sbjct: 3 VKVFNLEGEPV-EEIELPKVFSTPFRPDLIRRAVIASWTHRIQPQGRDPLAGKRRVTENI 61
Query: 83 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSA 142
G G +AR+ R++ AF R GR P ++ + +N +RR A++SA
Sbjct: 62 GKGHGMARVERIKTPPRF----AAFVPFARGGRRTHPPKVEKIIWEDINKKERRLAIMSA 117
Query: 143 IAASSVPALVMSKGH 157
IAA++ P LV ++GH
Sbjct: 118 IAATANPDLVRARGH 132
>sp|Q8TZZ9|RL4_PYRFU 50S ribosomal protein L4P OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rpl4p PE=1 SV=1
Length = 255
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 73/128 (57%), Gaps = 4/128 (3%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
G + E+ G G ++AR+ R++ + AF R GR P ++ + +N
Sbjct: 53 GKRRVTENIGKGHSMARVERLKTPPRY----AAFVPFARGGRRTHPPKVEKIIWEDINKK 108
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWN 275
++R A++SAIAA++ LV ++GH+I +VP+ PL+V D +Q+ +KT++ ++ W+
Sbjct: 109 EKRLALMSAIAATANYDLVRARGHIIDNVPQLPLIVVDDLQKVQKTRETREIFKKLGIWD 168
Query: 276 DVLKVQSS 283
D+++ +
Sbjct: 169 DIVRAKEK 176
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 5/135 (3%)
Query: 23 ITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESW 82
+ V+ +P G+ + LP VF P RPD++ + QP AG + E+
Sbjct: 3 VKVFDLNGQPVGE-IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENI 61
Query: 83 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSA 142
G G ++AR+ R++ + AF R GR P ++ + +N ++R A++SA
Sbjct: 62 GKGHSMARVERLKTPPRY----AAFVPFARGGRRTHPPKVEKIIWEDINKKEKRLALMSA 117
Query: 143 IAASSVPALVMSKGH 157
IAA++ LV ++GH
Sbjct: 118 IAATANYDLVRARGH 132
>sp|Q4JB41|RL4_SULAC 50S ribosomal protein L4P OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=rpl4p PE=3 SV=1
Length = 266
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 69/129 (53%), Gaps = 5/129 (3%)
Query: 35 QTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVARIPRV 94
+ + LP F P+R D++ V + QP AG +TSA S+G +AR+PRV
Sbjct: 21 EEIELPLFFSYPVRKDLIRRVFLSEFTKSLQPKGRDPLAGKRTSALSFGINLGIARVPRV 80
Query: 95 RGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMS 154
+G SG+ A GR+ P +R +VN+ +++ ++SA+AA++ P V +
Sbjct: 81 KG-----SGEAALAPNTVGGRLAFPPTTEKRLVEEVNLKEKKLGIISALAATADPNFVKA 135
Query: 155 KGHQTSAES 163
+GH+ ++ +
Sbjct: 136 RGHRFTSNN 144
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 67/128 (52%), Gaps = 6/128 (4%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
G +TSA S+G +AR+PRV+G SG+ A GR+ P +R +VN+
Sbjct: 60 GKRTSALSFGINLGIARVPRVKG-----SGEAALAPNTVGGRLAFPPTTEKRLVEEVNLK 114
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWN 275
+++ ++SA+AA++ P V ++GH P+++ D + K K+ L I +
Sbjct: 115 EKKLGIISALAATADPNFVKARGHRFTS-NNVPIILVDDFENISKAKEIMDILKSIGVVD 173
Query: 276 DVLKVQSS 283
D+ +V+ S
Sbjct: 174 DIKRVKES 181
>sp|Q8TY91|RL4_METKA 50S ribosomal protein L4P OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=rpl4p PE=3 SV=1
Length = 260
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAG-RMFAPTRIWRRWHRKVNV 214
G +TSAESWG G VA +PRV+G +G+ A G + APT + W ++VN
Sbjct: 53 GFRTSAESWGAGHGVAMVPRVKGRRHPAAGRAARVAQAVGGQKAHAPT-PEKDWTQRVNR 111
Query: 215 NQRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAW 274
+RR A+ SA+AA++ P V +GH+I DVP P+VV D+++ K ++ F + W
Sbjct: 112 KERRAALRSALAATAKPEFVKERGHVIDDVPHLPVVVVDELKSLNKAREVREFFKSVGLW 171
Query: 275 NDVLKVQSS 283
DV + +S+
Sbjct: 172 ADVERAKSN 180
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 35 QTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVARIPRV 94
TV LPS F+ P+R D++ N RQPY AG +TSAESWG G VA +PRV
Sbjct: 14 DTVELPSFFEEPVRKDLIRRAVLAAQANRRQPYGTDPRAGFRTSAESWGAGHGVAMVPRV 73
Query: 95 RGGGTHRSGQGAFGNMCRAG-RMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVM 153
+G +G+ A G + APT + W ++VN +RR A+ SA+AA++ P V
Sbjct: 74 KGRRHPAAGRAARVAQAVGGQKAHAPT-PEKDWTQRVNRKERRAALRSALAATAKPEFVK 132
Query: 154 SKGH 157
+GH
Sbjct: 133 ERGH 136
>sp|A0B9W9|RL4_METTP 50S ribosomal protein L4P OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=rpl4p PE=3 SV=1
Length = 251
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
Query: 32 PTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVARI 91
P G+ V LP++F RPD++ N QPY AG TSA SWG G V+R+
Sbjct: 12 PVGEIV-LPAIFDEEYRPDLIKRAVLAAQANRLQPYGPHFYAGMNTSARSWGPGHGVSRV 70
Query: 92 PRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPAL 151
PR+ G + A M R GR P + K+N +R A+ SA+AA++ P +
Sbjct: 71 PRIVTG-----RRAAAVPMARGGRASHPPVPSKVLSEKINEKERIKAIRSAVAATAKPDI 125
Query: 152 VMSKGHQTSAE 162
V ++GH S E
Sbjct: 126 VAARGHLFSGE 136
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 7/127 (5%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
G TSA SWG G V+R+PR+ G + A M R GR P + K+N
Sbjct: 53 GMNTSARSWGPGHGVSRVPRIVTGR-----RAAAVPMARGGRASHPPVPSKVLSEKINEK 107
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWN 275
+R A+ SA+AA++ P +V ++GH+ E P+VV +I+ KT + FL W+
Sbjct: 108 ERIKAIRSAVAATAKPDIVAARGHLFSG--ELPIVVRGEIESISKTSELRRFLMAAGLWD 165
Query: 276 DVLKVQS 282
DV++ ++
Sbjct: 166 DVMRAKN 172
>sp|Q9V1T6|RL4_PYRAB 50S ribosomal protein L4P OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=rpl4p PE=3 SV=1
Length = 255
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 70/128 (54%), Gaps = 4/128 (3%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
G + E+ G G +AR+ R++ + AF R GR P ++ + +N
Sbjct: 53 GKRRVTENIGKGHGMARVERLKTPPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKK 108
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWN 275
+RR A++SAIAA++ +V ++GH+I +VP+ PL+V D +Q+ KT++ ++ W+
Sbjct: 109 ERRLAIMSAIAATANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWD 168
Query: 276 DVLKVQSS 283
D+ + +
Sbjct: 169 DIERAKEK 176
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 5/135 (3%)
Query: 23 ITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESW 82
+ V+ +P + + LP VF P RPD++ + QP AG + E+
Sbjct: 3 VKVFDLNGQPVDE-IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENI 61
Query: 83 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSA 142
G G +AR+ R++ + AF R GR P ++ + +N +RR A++SA
Sbjct: 62 GKGHGMARVERLKTPPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSA 117
Query: 143 IAASSVPALVMSKGH 157
IAA++ +V ++GH
Sbjct: 118 IAATANYDIVKARGH 132
>sp|Q975I2|RL4_SULTO 50S ribosomal protein L4P OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=rpl4p PE=3 SV=2
Length = 266
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 70/127 (55%), Gaps = 6/127 (4%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
G +TSA S+G +AR+PRV+ +G+ A GR+ P + ++ +VN
Sbjct: 60 GKRTSALSFGINLGLARVPRVKT-----TGEAALAPNTVGGRLAFPPTVEKKLVEEVNKK 114
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWN 275
+++ A++SA++A++ V ++GH+ + P++V D I + KTK+ L +K +
Sbjct: 115 EKKLAIISALSATANMNFVKNRGHVFS-IDTLPIIVVDDITKLTKTKEIIEVLESLKVYE 173
Query: 276 DVLKVQS 282
DV +V+
Sbjct: 174 DVERVKD 180
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 67/130 (51%), Gaps = 5/130 (3%)
Query: 35 QTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVARIPRV 94
+ + LP F P+R D++ V + QP AG +TSA S+G +AR+PRV
Sbjct: 21 EEIELPIFFSYPVRKDLIRRVFISEFTKALQPKGRDPMAGKRTSALSFGINLGLARVPRV 80
Query: 95 RGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMS 154
+ +G+ A GR+ P + ++ +VN +++ A++SA++A++ V +
Sbjct: 81 KT-----TGEAALAPNTVGGRLAFPPTVEKKLVEEVNKKEKKLAIISALSATANMNFVKN 135
Query: 155 KGHQTSAESW 164
+GH S ++
Sbjct: 136 RGHVFSIDTL 145
>sp|O59420|RL4_PYRHO 50S ribosomal protein L4P OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl4p PE=3 SV=1
Length = 255
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 69/128 (53%), Gaps = 4/128 (3%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
G + E+ G G +AR+ R++ + AF R GR P ++ + +N
Sbjct: 53 GKRRVTENIGKGHGMARVERLKTPPRY----AAFVPFARGGRRAHPPKVEKIIWEGINKK 108
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWN 275
+RR A++SAIAA++ +V S+GH++ +VP+ PL+V D +Q+ KT++ ++ W
Sbjct: 109 ERRLAIMSAIAATANYDIVKSRGHIVDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWE 168
Query: 276 DVLKVQSS 283
D+ + +
Sbjct: 169 DIERAKEK 176
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 5/135 (3%)
Query: 23 ITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESW 82
+ V+ +P + + LP VF P RPD++ + QP AG + E+
Sbjct: 3 VKVFDLNGQPVDE-IELPRVFLTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENI 61
Query: 83 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSA 142
G G +AR+ R++ + AF R GR P ++ + +N +RR A++SA
Sbjct: 62 GKGHGMARVERLKTPPRY----AAFVPFARGGRRAHPPKVEKIIWEGINKKERRLAIMSA 117
Query: 143 IAASSVPALVMSKGH 157
IAA++ +V S+GH
Sbjct: 118 IAATANYDIVKSRGH 132
>sp|B6YSL4|RL4_THEON 50S ribosomal protein L4P OS=Thermococcus onnurineus (strain NA1)
GN=rpl4p PE=3 SV=1
Length = 255
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 69/128 (53%), Gaps = 4/128 (3%)
Query: 156 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVN 215
G + E+ G G +AR+ R++ AF R GR P ++ + +N
Sbjct: 53 GKRRVTENIGKGHGMARVERIKTSPRF----AAFVPFARGGRRTHPPKVEKIIWEDINKK 108
Query: 216 QRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWN 275
+RR A++SAIAA++ LV ++GH++ +VP+ PLVV + +++ KT Q ++ W+
Sbjct: 109 ERRLAIMSAIAATANYDLVRARGHIVDNVPQVPLVVVNDLEKVFKTAQTREIFKKLGVWD 168
Query: 276 DVLKVQSS 283
D+ + + +
Sbjct: 169 DIERAKKN 176
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 5/135 (3%)
Query: 23 ITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESW 82
+ V++ + EP + + LP+VF P RPD++ + QP AG + E+
Sbjct: 3 VKVFNLEGEPV-EEIELPNVFATPFRPDLIRRAVIASWTHRIQPQGRDPLAGKRRVTENI 61
Query: 83 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSA 142
G G +AR+ R++ AF R GR P ++ + +N +RR A++SA
Sbjct: 62 GKGHGMARVERIKTSPRF----AAFVPFARGGRRTHPPKVEKIIWEDINKKERRLAIMSA 117
Query: 143 IAASSVPALVMSKGH 157
IAA++ LV ++GH
Sbjct: 118 IAATANYDLVRARGH 132
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.132 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,911,271
Number of Sequences: 539616
Number of extensions: 4480666
Number of successful extensions: 10123
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 9858
Number of HSP's gapped (non-prelim): 169
length of query: 286
length of database: 191,569,459
effective HSP length: 116
effective length of query: 170
effective length of database: 128,974,003
effective search space: 21925580510
effective search space used: 21925580510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)