Query psy13118
Match_columns 286
No_of_seqs 168 out of 1128
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 20:01:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13118.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13118hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zkr_c 60S ribosomal protein L 100.0 5.2E-54 1.8E-58 413.9 15.2 189 16-286 1-189 (421)
2 4a17_C RPL4, ribosomal protein 100.0 1.5E-52 5.1E-57 402.8 15.0 187 17-285 1-193 (410)
3 3j21_D 50S ribosomal protein L 100.0 1.8E-50 6E-55 369.1 16.4 178 21-286 1-179 (255)
4 3iz5_D 60S ribosomal protein L 100.0 1.6E-50 5.3E-55 388.7 15.0 189 16-286 2-193 (405)
5 2wwb_H 60S ribosomal protein L 100.0 1.5E-49 5E-54 377.7 13.8 186 19-286 2-187 (362)
6 1vq8_C 50S ribosomal protein L 100.0 1.7E-48 5.7E-53 354.4 14.3 173 21-285 1-173 (246)
7 3v2d_F 50S ribosomal protein L 100.0 1.5E-38 5E-43 283.0 12.5 145 18-274 4-149 (210)
8 1dmg_A Ribosomal protein L4; a 100.0 3.9E-39 1.3E-43 289.2 8.0 146 21-274 1-148 (225)
9 3bbo_G Ribosomal protein L4; l 100.0 2.2E-38 7.7E-43 294.2 5.3 151 15-275 47-201 (293)
10 2zjr_C 50S ribosomal protein L 100.0 8.6E-38 2.9E-42 276.8 8.4 142 20-274 1-143 (205)
11 3r8s_E 50S ribosomal protein L 100.0 5.2E-36 1.8E-40 265.3 9.7 131 36-273 11-143 (201)
12 2ftc_D Mitochondrial ribosomal 100.0 5.9E-31 2E-35 228.4 10.8 116 53-274 1-117 (175)
13 2wwb_H 60S ribosomal protein L 99.8 5.4E-22 1.8E-26 188.9 6.4 111 47-162 35-145 (362)
14 3iz5_D 60S ribosomal protein L 99.8 3.7E-20 1.3E-24 178.4 5.1 108 47-169 41-170 (405)
15 1vq8_C 50S ribosomal protein L 99.8 3.4E-19 1.2E-23 162.1 4.8 103 47-161 31-133 (246)
16 2zkr_c 60S ribosomal protein L 99.7 4.6E-18 1.6E-22 164.4 5.4 111 47-162 37-147 (421)
17 3j21_D 50S ribosomal protein L 99.7 5.4E-18 1.9E-22 155.0 4.8 97 47-161 31-136 (255)
18 4a17_C RPL4, ribosomal protein 99.6 3.8E-16 1.3E-20 150.8 4.8 100 47-161 38-151 (410)
19 3v2d_F 50S ribosomal protein L 98.7 4.2E-09 1.4E-13 93.8 2.6 103 47-169 33-138 (210)
20 3bbo_G Ribosomal protein L4; l 98.7 6E-09 2E-13 97.2 3.7 86 46-147 83-169 (293)
21 2zjr_C 50S ribosomal protein L 98.7 6.4E-09 2.2E-13 92.1 3.5 104 47-170 27-133 (205)
22 2ftc_D Mitochondrial ribosomal 98.7 1.2E-08 4.1E-13 88.5 5.0 86 49-149 2-88 (175)
23 1dmg_A Ribosomal protein L4; a 98.6 8.3E-09 2.9E-13 92.7 1.7 86 47-148 32-118 (225)
24 3r8s_E 50S ribosomal protein L 98.6 7.2E-09 2.5E-13 91.8 1.1 103 47-169 28-133 (201)
No 1
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=5.2e-54 Score=413.88 Aligned_cols=189 Identities=72% Similarity=1.203 Sum_probs=175.1
Q ss_pred hhhcCceeEEecCCCCcccceeeccccccccCchhHHHHHHHHHHhcCCCCCCCCCCCccceeeeeeCCCcceecccccc
Q psy13118 16 VGVARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVARIPRVR 95 (286)
Q Consensus 16 ~~~~m~~i~v~~~~~~~~g~~v~lp~vf~~~ir~~lI~~~v~~~q~~gRqp~Ag~~~~g~kt~ae~~G~GRkv~RvP~~r 95 (286)
||+++|+++|||.+|+.+|.+|+||+||..|||+|+||++|.+++.|.||||+.++.+|++|++||||+||+++|||+.+
T Consensus 1 ~~~~rm~v~V~~~~G~~~g~~ieLp~VF~~piR~dlIh~vV~~~~an~RQgta~t~~AG~KTraEv~G~GRKp~RiPRv~ 80 (421)
T 2zkr_c 1 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVR 80 (421)
T ss_dssp ------CCEEECTTSSEEEECSSCCGGGGSCCCHHHHHHHHHHHHHTTCCCCCCCSCTTTCSCCCCCCSSSSSCCSCCBT
T ss_pred CCCcCceeEEEcCCCCccccEEehhHhhCCCccHHHHHHHHHHHHHhccCCCCcCcccCCcceeEecCCCCCcCCccccc
Confidence 57899999999999999886799999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCcccCCCCccccccccccccCCCchhhhhhhhhhhhhHHHHHHHHHhhccChhHHhhcCCcccccccccccccccccc
Q psy13118 96 GGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAESWGTGRAVARIPR 175 (286)
Q Consensus 96 qkGTgrArqGa~~~~~rgGr~ahpp~~~k~~~~kiN~ker~~A~~sAiAata~~~lV~~RGH~~~~~s~~~~~~~~r~p~ 175 (286)
|+||||||||++ +
T Consensus 81 QKGTGRARqGs~----------------------------------------------------------------r--- 93 (421)
T 2zkr_c 81 GGGTHRSGQGAF----------------------------------------------------------------G--- 93 (421)
T ss_dssp TTTBCCCSTTCC----------------------------------------------------------------T---
T ss_pred CCCCCccCcccc----------------------------------------------------------------c---
Confidence 999999999988 2
Q ss_pred ccCCCccccCccccCcccccceeeCCCCCCcccccccCHHHHHHHHHHHHHhccCchhhhccCccccCCCCcCEEEecCC
Q psy13118 176 VRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKI 255 (286)
Q Consensus 176 ~~ggGt~rAgqgA~aP~~rGG~~~~p~~~~r~~~~kvn~k~rr~A~~saia~~~~~~lV~~RGH~i~~v~~~~lvV~d~~ 255 (286)
++||||++|||++|||+|+++||+|+|++||+||||+++.++||++|||+|+++.++||||+|+|
T Consensus 94 ---------------s~~RGGr~fgP~kp~R~~~~KlNkK~rrlAlrSALSaka~~~LV~aRGH~i~~~~e~~LVVvD~l 158 (421)
T 2zkr_c 94 ---------------NMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALACLSLPALVMSKGHRIEEVPELPLVVEDKV 158 (421)
T ss_dssp ---------------TSTTCCCCSSCCCSSSCCCCCCCHHHHHHHHHHHHHHHTCHHHHHHTTCCCCSCSCCSEEECGGG
T ss_pred ---------------cccccceeeCCCCCCcchhhhcCHHHHHHHHHHHHHhcccchhhhhccccccccccCCEEEEeCC
Confidence 36778999999989999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHCCCcchhHhhhccCCC
Q psy13118 256 QEYKKTKQATIFLHRIKAWNDVLKVQSSGTF 286 (286)
Q Consensus 256 ~~~~KTKe~~~~Lk~l~~~~Dv~r~~~~r~~ 286 (286)
++.+|||+++++|+.||+++|++|++++++|
T Consensus 159 e~~~KTK~~v~~Lk~lgl~~d~~r~~~sk~i 189 (421)
T 2zkr_c 159 EGYKKTKEAVLLLKKLKAWNDIKKVYASQRM 189 (421)
T ss_dssp GGCCCHHHHHHHHHHTTCTHHHHHTTSSCEE
T ss_pred ccccChHHHHHHHHhcCCCcchhhhhhheec
Confidence 9889999999999999999999999988653
No 2
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_C 4a1c_C 4a1e_C
Probab=100.00 E-value=1.5e-52 Score=402.75 Aligned_cols=187 Identities=53% Similarity=0.844 Sum_probs=175.4
Q ss_pred hhcCceeEEe-cCCCCcccce-eeccccccccCchhHHHHHHHHHHhcCCCCCCCCCC----CccceeeeeeCCCcceec
Q psy13118 17 GVARPLITVY-SEKNEPTGQT-VTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKD----AGHQTSAESWGTGRAVAR 90 (286)
Q Consensus 17 ~~~m~~i~v~-~~~~~~~g~~-v~lp~vf~~~ir~~lI~~~v~~~q~~gRqp~Ag~~~----~g~kt~ae~~G~GRkv~R 90 (286)
|++||+++|| |.+|+.++.+ |+||+||..|||+|+||+++.+++++.||||+.+.. +++++++|+||+||+++|
T Consensus 1 m~~~p~v~V~~~~~G~~~~g~~veLp~VF~~~ir~dlIh~vV~~~~anrRQ~~~~~~~~rGTa~tktraEv~GtGRk~~R 80 (410)
T 4a17_C 1 MTSRPQIHVHDAKEANKQTATKLTLPAVFTAPIRTDIVHKVFTDLNKNRKQASGVKISTRGTAGMGHSAESWGTGRAVAR 80 (410)
T ss_dssp -CCCCEEEEEESSSTTEEEEEEEECCGGGGSCCCHHHHHHHHHHHHHTTCCCCCCCBCSSCBTTCCSCEEECCGGGSSCS
T ss_pred CCCCCeeEEEECCCCCccCCceEehhHhhCCCCcHHHHHHHHHHHHHhCcCcccCCCcccccccCCccceeCCCCCCccc
Confidence 6889999999 8999997446 999999999999999999999999999999988777 999999999999999999
Q ss_pred cccccCCCcccCCCCccccccccccccCCCchhhhhhhhhhhhhHHHHHHHHHhhccChhHHhhcCCccccccccccccc
Q psy13118 91 IPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAESWGTGRAV 170 (286)
Q Consensus 91 vP~~rqkGTgrArqGa~~~~~rgGr~ahpp~~~k~~~~kiN~ker~~A~~sAiAata~~~lV~~RGH~~~~~s~~~~~~~ 170 (286)
||+.+||||||||||++
T Consensus 81 iPR~~QKGTGRARqGs~--------------------------------------------------------------- 97 (410)
T 4a17_C 81 IPRVGGSGTHRSGQAAF--------------------------------------------------------------- 97 (410)
T ss_dssp SEEECCSSSTTTTCBCS---------------------------------------------------------------
T ss_pred cccccCCCCCccccccc---------------------------------------------------------------
Confidence 99988999999999988
Q ss_pred cccccccCCCccccCccccCcccccceeeCCCCCCcccccccCHHHHHHHHHHHHHhccCchhhhccCccccCCCCcCEE
Q psy13118 171 ARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLV 250 (286)
Q Consensus 171 ~r~p~~~ggGt~rAgqgA~aP~~rGG~~~~p~~~~r~~~~kvn~k~rr~A~~saia~~~~~~lV~~RGH~i~~v~~~~lv 250 (286)
+ |+|+||++|+|+++||+|+++||+|+|++||+||||+++.++||++|||+|+++.|+|||
T Consensus 98 -r------------------P~~rGGr~fgP~p~~R~y~~KlNKK~rrlAlrSALSaka~~~lV~aRgh~i~~v~e~~LV 158 (410)
T 4a17_C 98 -G------------------NQCRKGRMFAPLKTYRRVHRRVNVNQKRHAVAAALAASALVPLVFARGHRISNVQELPYV 158 (410)
T ss_dssp -S------------------TTSSSCCCSSCCCSCCCCCCCCCHHHHHHHHHHHHHHHTCHHHHHHTTCCCTTCCSSSEE
T ss_pred -C------------------CccCCeEEcCCCCCccchhhhhCHHHHHHHHHHHHHHhcchhhhhhccccccccCcCCEE
Confidence 2 567778999999888999999999999999999999999999999999999999999999
Q ss_pred EecCCCCcccHHHHHHHHHHCCCcchhHhhhccCC
Q psy13118 251 VSDKIQEYKKTKQATIFLHRIKAWNDVLKVQSSGT 285 (286)
Q Consensus 251 V~d~~~~~~KTKe~~~~Lk~l~~~~Dv~r~~~~r~ 285 (286)
|+|+|++.+|||+++++|+.||+++|++|++++++
T Consensus 159 V~D~~e~~~KTK~~v~~Lk~lg~~~dv~r~~~~k~ 193 (410)
T 4a17_C 159 FDDSVESYEKTKQAVAFLKRVGAYDDVLRVAETKA 193 (410)
T ss_dssp ECTTGGGCCSHHHHHHHHHHHTTHHHHHHHHHCEE
T ss_pred EEecCcCCCCHHHHHHHHHHcCCcchhhhhhcccc
Confidence 99999988999999999999999999999998764
No 3
>3j21_D 50S ribosomal protein L4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.8e-50 Score=369.08 Aligned_cols=178 Identities=29% Similarity=0.532 Sum_probs=166.4
Q ss_pred ceeEEecCCCCcccceeeccccccccCchhHHHHHHHHHHhcCCCCCCCCCCCccceeeeeeCCCcceeccccccCCCc-
Q psy13118 21 PLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVARIPRVRGGGT- 99 (286)
Q Consensus 21 ~~i~v~~~~~~~~g~~v~lp~vf~~~ir~~lI~~~v~~~q~~gRqp~Ag~~~~g~kt~ae~~G~GRkv~RvP~~rqkGT- 99 (286)
|+++|||.+|+.+| +|+||+||..|+|+|+|++++.++++|.|||++-...+|++|++|+||+||+++|+| |||||
T Consensus 1 m~v~V~~~~G~~~g-~v~Lp~vF~~~~r~dli~~~v~~~~an~Rq~~Gt~~~ag~ktraev~G~Gr~~ar~~--RqKGtg 77 (255)
T 3j21_D 1 MKVKVFDLNGQPVG-EIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHSMARVE--RLKTPP 77 (255)
T ss_dssp CEEEEECTTSCEEE-EEECCGGGGSCCCHHHHHHHHHHHHHHTCCCCCCCSSTTSSSCCBCCCSSSSSCCCC--BCSSSC
T ss_pred CeeEEEcCCCCEee-EEEhHHhhCCCCcHHHHHHHHHHHHHhccccccCCcccCcccceeecCCCCCcCcCC--ccCCCC
Confidence 58999999999999 699999999999999999999999999999988888899999999999999998877 57776
Q ss_pred ccCCCCccccccccccccCCCchhhhhhhhhhhhhHHHHHHHHHhhccChhHHhhcCCccccccccccccccccccccCC
Q psy13118 100 HRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAESWGTGRAVARIPRVRGG 179 (286)
Q Consensus 100 grArqGa~~~~~rgGr~ahpp~~~k~~~~kiN~ker~~A~~sAiAata~~~lV~~RGH~~~~~s~~~~~~~~r~p~~~gg 179 (286)
|||
T Consensus 78 GrA----------------------------------------------------------------------------- 80 (255)
T 3j21_D 78 RYA----------------------------------------------------------------------------- 80 (255)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 333
Q ss_pred CccccCccccCcccccceeeCCCCCCcccccccCHHHHHHHHHHHHHhccCchhhhccCccccCCCCcCEEEecCCCCcc
Q psy13118 180 GTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYK 259 (286)
Q Consensus 180 Gt~rAgqgA~aP~~rGG~~~~p~~~~r~~~~kvn~k~rr~A~~saia~~~~~~lV~~RGH~i~~v~~~~lvV~d~~~~~~ 259 (286)
+++|+||||+++|||+|||+|++|||+|+|++||+||||+++.++||++|||+|++++++||||+|+|++.+
T Consensus 81 --------rrsP~~rGGg~~~gPkp~R~~~~klNkK~rrlAl~sALsa~~~~~lv~~rgh~~~~~~~~~lvVvd~~~~~~ 152 (255)
T 3j21_D 81 --------AFVPFARGGRRTHPPKVEKIIWEDINKKEKRLALMSAIAATANYDLVRARGHIIDNVPQLPLIVVDDLQKVQ 152 (255)
T ss_dssp --------SSCSSSTTCCCSSCCCTTSCCCCCCCHHHHHHHHHHHHHHTTCHHHHHHHTCCCSCTTCSSEEECGGGGTCC
T ss_pred --------ccCccccCCeeecCCCCCcccceecCHHHHHHHHHHHHHHHhhcccchhcccccccccceeEEEEeCCcCCC
Confidence 347888899999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cHHHHHHHHHHCCCcchhHhhhccCCC
Q psy13118 260 KTKQATIFLHRIKAWNDVLKVQSSGTF 286 (286)
Q Consensus 260 KTKe~~~~Lk~l~~~~Dv~r~~~~r~~ 286 (286)
|||+++++|++||+++||+|++++++|
T Consensus 153 KTK~~~~~L~~lg~~~dv~r~~~~~~~ 179 (255)
T 3j21_D 153 KTRETREIFKKLGIWDDIVRAKEKSGV 179 (255)
T ss_dssp CHHHHHHHHHHHTCTHHHHHHTSCCCS
T ss_pred ChHHHHHHHHHcCChhhhHHhhcccee
Confidence 999999999999999999999998654
No 4
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_D
Probab=100.00 E-value=1.6e-50 Score=388.69 Aligned_cols=189 Identities=59% Similarity=0.991 Sum_probs=173.6
Q ss_pred hhhcCceeEEecCCCCcccc---eeeccccccccCchhHHHHHHHHHHhcCCCCCCCCCCCccceeeeeeCCCcceeccc
Q psy13118 16 VGVARPLITVYSEKNEPTGQ---TVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVARIP 92 (286)
Q Consensus 16 ~~~~m~~i~v~~~~~~~~g~---~v~lp~vf~~~ir~~lI~~~v~~~q~~gRqp~Ag~~~~g~kt~ae~~G~GRkv~RvP 92 (286)
+++++|+++|||.+|+.+|+ +|+||+||..|||+||||++|.+++.+.||||+.++++|+++++|+||+||+++|+|
T Consensus 2 ~~~~rp~v~V~~~~G~~~g~~~~~v~Lp~VF~~~~r~dlIh~vV~~~~an~RQgt~~tk~AG~~traEv~GtGRk~~Rip 81 (405)
T 3iz5_D 2 ATQTRPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIP 81 (405)
T ss_dssp TTCCCCEECCBCCSCCCCSSCCCCEECCGGGGSCCCHHHHHHHHHHHHHTCSCCCCSCTTTTTCSCCCCCCSSSSSCSSC
T ss_pred CcccCceEEEEeCCCCcccccceeeccHHHhCCCCCHHHHHHHHHHHHHhhhcCcCCCccccCCccceecCCCCCccccc
Confidence 46789999999999999995 799999999999999999999999999999999999999999999999999999888
Q ss_pred cccCCCcccCCCCccccccccccccCCCchhhhhhhhhhhhhHHHHHHHHHhhccChhHHhhcCCccccccccccccccc
Q psy13118 93 RVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAESWGTGRAVAR 172 (286)
Q Consensus 93 ~~rqkGTgrArqGa~~~~~rgGr~ahpp~~~k~~~~kiN~ker~~A~~sAiAata~~~lV~~RGH~~~~~s~~~~~~~~r 172 (286)
+.+|+||||||||++
T Consensus 82 RQKG~GTgRAr~gs~----------------------------------------------------------------- 96 (405)
T 3iz5_D 82 RVPGGGTHRAGQGAF----------------------------------------------------------------- 96 (405)
T ss_dssp CCCCCSSSCCCSCCS-----------------------------------------------------------------
T ss_pred cccCCCCCccCCCCC-----------------------------------------------------------------
Confidence 654445666666655
Q ss_pred cccccCCCccccCccccCcccccceeeCCCCCCcccccccCHHHHHHHHHHHHHhccCchhhhccCccccCCCCcCEEEe
Q psy13118 173 IPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVS 252 (286)
Q Consensus 173 ~p~~~ggGt~rAgqgA~aP~~rGG~~~~p~~~~r~~~~kvn~k~rr~A~~saia~~~~~~lV~~RGH~i~~v~~~~lvV~ 252 (286)
.++|+||++|+|+++||+|+++||+|+|++||+||||+++.++||++|||+|++++|+||||+
T Consensus 97 -----------------~~~~gGGr~fgP~p~~R~y~~klNKK~rrlAlrSALSaka~~~lV~aRghri~~v~e~~LVV~ 159 (405)
T 3iz5_D 97 -----------------GNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIETVPELPLVIS 159 (405)
T ss_dssp -----------------SSSSTTCCCSSSCCSCCCCCCCCCHHHHHHHHHHHHHHTTCHHHHHHHTCCCCCCSSSSEEEC
T ss_pred -----------------CCccCCeEEcCCCCCCccceeecCHHHHHHHHHHHHHHhcchhhhhhccccccccccCCEEEE
Confidence 456677999999887899999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccHHHHHHHHHHCCCcchhHhhhccCCC
Q psy13118 253 DKIQEYKKTKQATIFLHRIKAWNDVLKVQSSGTF 286 (286)
Q Consensus 253 d~~~~~~KTKe~~~~Lk~l~~~~Dv~r~~~~r~~ 286 (286)
|++++.+|||+++++|+.||+++|++|++++++|
T Consensus 160 D~~~~~~KTK~~v~~Lk~lg~~~d~~k~~~~~~i 193 (405)
T 3iz5_D 160 DSAESIEKTSQAIKILKQVGAYADAEKAKDSVGI 193 (405)
T ss_dssp TTSSSCCCHHHHHHHHHHHTCHHHHHTTSSCCEE
T ss_pred ecCcccCChHHHHHHHHHcCCccccchhhccccc
Confidence 9999899999999999999999999999887654
No 5
>2wwb_H 60S ribosomal protein L4-B; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_H 2ww9_H 3izc_D 3izs_D 3o58_D 3o5h_D 3u5e_C 3u5i_C 1s1i_D 3jyw_D
Probab=100.00 E-value=1.5e-49 Score=377.67 Aligned_cols=186 Identities=59% Similarity=0.972 Sum_probs=172.8
Q ss_pred cCceeEEecCCCCcccceeeccccccccCchhHHHHHHHHHHhcCCCCCCCCCCCccceeeeeeCCCcceeccccccCCC
Q psy13118 19 ARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVARIPRVRGGG 98 (286)
Q Consensus 19 ~m~~i~v~~~~~~~~g~~v~lp~vf~~~ir~~lI~~~v~~~q~~gRqp~Ag~~~~g~kt~ae~~G~GRkv~RvP~~rqkG 98 (286)
++|+++|||.+|+.+|++|+||+||+.|+|+|+|++++.+++.|.||||+.+++.|+.+.+++||+||+..
T Consensus 2 ~r~~v~V~~~~G~~~g~~i~Lp~VF~~p~r~dlih~vv~~~~an~RQgt~~tk~rgevtg~K~wGTGRAra--------- 72 (362)
T 2wwb_H 2 SRPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAESWGTGRAVA--------- 72 (362)
T ss_dssp CSSCCCCCCSSCSCCSCCCCCCGGGCSCCCHHHHHHHHHHHHHHHCCCCCCCSSSSCSSCCSSCCCCSSSC---------
T ss_pred CCCeeEEEcCCCcCcCceEehhHhhCCCccHHHHHHHHHHHHHhccCCCCCCCcccccccceecCCCCCee---------
Confidence 68999999999999996699999999999999999999999999999999998888888878888888655
Q ss_pred cccCCCCccccccccccccCCCchhhhhhhhhhhhhHHHHHHHHHhhccChhHHhhcCCccccccccccccccccccccC
Q psy13118 99 THRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAESWGTGRAVARIPRVRG 178 (286)
Q Consensus 99 TgrArqGa~~~~~rgGr~ahpp~~~k~~~~kiN~ker~~A~~sAiAata~~~lV~~RGH~~~~~s~~~~~~~~r~p~~~g 178 (286)
|||+.+|
T Consensus 73 -------------------------------------------------------------------------ripRv~g 79 (362)
T 2wwb_H 73 -------------------------------------------------------------------------RIPRVGG 79 (362)
T ss_dssp -------------------------------------------------------------------------SCSCCCS
T ss_pred -------------------------------------------------------------------------ecccccC
Confidence 5555677
Q ss_pred CCccccCccccCcccccceeeCCCCCCcccccccCHHHHHHHHHHHHHhccCchhhhccCccccCCCCcCEEEecCCCCc
Q psy13118 179 GGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEY 258 (286)
Q Consensus 179 gGt~rAgqgA~aP~~rGG~~~~p~~~~r~~~~kvn~k~rr~A~~saia~~~~~~lV~~RGH~i~~v~~~~lvV~d~~~~~ 258 (286)
||+.|+++|||.|+++||++|+|+++||+|+++||+|+|++|++||||+++.++||++|||+|+++.++||||+|+|++.
T Consensus 80 ~Gs~RSp~ga~~~~~gGG~~fgP~p~~R~~~~klNkK~rrlAl~SALsaka~~~lv~arGH~i~~~~e~~LvVvd~~~~~ 159 (362)
T 2wwb_H 80 GGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESI 159 (362)
T ss_dssp CSSSSCSSTTTSSSCSSSCCSSSSCSSCCCCCCCCHHHHHHHHHHHHHGGGCSTHHHHHTCCCCSCSSCSBCCCGGGGTC
T ss_pred CCCCCCcccccCCccCCeEECCCCCCCcchhhhcCHHHHHHHHHHHHHhccchhhhhhccccccccccCcEEEEeccccc
Confidence 78888888888999999999999988999999999999999999999999999999999999999999999999999889
Q ss_pred ccHHHHHHHHHHCCCcchhHhhhccCCC
Q psy13118 259 KKTKQATIFLHRIKAWNDVLKVQSSGTF 286 (286)
Q Consensus 259 ~KTKe~~~~Lk~l~~~~Dv~r~~~~r~~ 286 (286)
+|||+++++|++||+++|++|++++++|
T Consensus 160 ~KTK~~~~~Lk~lg~~~d~~r~~~~~~i 187 (362)
T 2wwb_H 160 QKTKEAVAALKAVGAHSDLLKVLKSKKL 187 (362)
T ss_dssp CCHHHHHHHHHHHSCSHHHHHHTSTTSC
T ss_pred CCHHHHHHHHHhcCCCcchhhhhhhhhc
Confidence 9999999999999999999999998765
No 6
>1vq8_C 50S ribosomal protein L4E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.22.1.1 PDB: 1k73_E* 1k8a_E* 1k9m_E* 1kc8_E* 1kd1_E* 1kqs_C* 1m1k_E* 1m90_E* 1n8r_E* 1nji_E* 1q7y_E* 1q81_E* 1q82_E* 1q86_E* 1qvf_C 1qvg_C 1s72_C* 1vq4_C* 1vq5_C* 1vq6_C* ...
Probab=100.00 E-value=1.7e-48 Score=354.42 Aligned_cols=173 Identities=29% Similarity=0.460 Sum_probs=162.1
Q ss_pred ceeEEecCCCCcccceeeccccccccCchhHHHHHHHHHHhcCCCCCCCCCCCccceeeeeeCCCcceeccccccCCCcc
Q psy13118 21 PLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVARIPRVRGGGTH 100 (286)
Q Consensus 21 ~~i~v~~~~~~~~g~~v~lp~vf~~~ir~~lI~~~v~~~q~~gRqp~Ag~~~~g~kt~ae~~G~GRkv~RvP~~rqkGTg 100 (286)
|+++|||.+|+.+| +|+||+||+.|+|+|+||+++.++++|.||||+.+..+|++|++|+||+||+++|+|+ ||
T Consensus 1 m~v~v~~~~g~~~g-~v~Lp~vF~~~~r~dli~~~v~~~~an~Rqgt~~~~~aG~kt~ae~~GtGR~~ari~r--qK--- 74 (246)
T 1vq8_C 1 MQATIYDLDGNTDG-EVDLPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPK--LD--- 74 (246)
T ss_dssp CEEEEECTTSCEEE-EEECCGGGGSCCCHHHHHHHHHHHHHHTCCCCCCCTTTTTCCCCBCCCSSSSCCCCCE--ET---
T ss_pred CeeEEEcCCCCCcc-EEEhhHhhCCCccHHHHHHHHHHHHHhcccCcccccccCcccceeeccCCCCcccccc--cc---
Confidence 46999999999998 6999999999999999999999999999999999999999999999999999988885 43
Q ss_pred cCCCCccccccccccccCCCchhhhhhhhhhhhhHHHHHHHHHhhccChhHHhhcCCccccccccccccccccccccCCC
Q psy13118 101 RSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAESWGTGRAVARIPRVRGGG 180 (286)
Q Consensus 101 rArqGa~~~~~rgGr~ahpp~~~k~~~~kiN~ker~~A~~sAiAata~~~lV~~RGH~~~~~s~~~~~~~~r~p~~~ggG 180 (286)
T Consensus 75 -------------------------------------------------------------------------------- 74 (246)
T 1vq8_C 75 -------------------------------------------------------------------------------- 74 (246)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccCcccccceeeCCCCCCcccccccCHHHHHHHHHHHHHhccCchhhhccCccccCCCCcCEEEecCCCCccc
Q psy13118 181 THRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKK 260 (286)
Q Consensus 181 t~rAgqgA~aP~~rGG~~~~p~~~~r~~~~kvn~k~rr~A~~saia~~~~~~lV~~RGH~i~~v~~~~lvV~d~~~~~~K 260 (286)
|+|+++|+||||+++|||+|||+|++|||+|+|++||+||||+++.++||++|||+|+++ +.||||+|+|++.+|
T Consensus 75 ----G~arrsP~~rGGg~~~gPkp~R~~~~klnkK~rrlAl~sALsa~~~~~lv~~rGh~~~~~-e~~lvVvd~~~~~~K 149 (246)
T 1vq8_C 75 ----GRARRVPQAVKGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATADADLVADRGHEFDRD-EVPVVVSDDFEDLVK 149 (246)
T ss_dssp ----TEECSSTTSTTCCCSSCCCTTCCCCCCCCHHHHHHHHHHHHHHTTCHHHHHHHTCCCCCS-SCSEEECGGGGGCCC
T ss_pred ----CccccCCccCCCeeecCCCCCccchhhcCHHHHHHHHHHHHHHhhhhhhhhhcccccccc-cccEEEEeCcccCCC
Confidence 123468899999999999999999999999999999999999999999999999999999 999999999998899
Q ss_pred HHHHHHHHHHCCCcchhHhhhccCC
Q psy13118 261 TKQATIFLHRIKAWNDVLKVQSSGT 285 (286)
Q Consensus 261 TKe~~~~Lk~l~~~~Dv~r~~~~r~ 285 (286)
||+++++|++||+++||+|+++ ++
T Consensus 150 TK~~~~~L~~lg~~~dv~r~~~-~~ 173 (246)
T 1vq8_C 150 TQEVVSLLEALDVHADIDRADE-TK 173 (246)
T ss_dssp HHHHHHHHHHTTCTHHHHHSSC-CE
T ss_pred HHHHHHHHHhcCCcchhhhhhh-hh
Confidence 9999999999999999999987 54
No 7
>3v2d_F 50S ribosomal protein L4; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_F 2hgj_F 2hgu_F 2j03_F 2jl6_F 2jl8_F 2v47_F 2v49_F 2wdi_F 2wdj_F 2wdl_F 2wdn_F 2wh2_F 2wh4_F 2wrj_F 2wrl_F 2wro_F 2wrr_F 2x9s_F 2x9u_F ...
Probab=100.00 E-value=1.5e-38 Score=282.97 Aligned_cols=145 Identities=23% Similarity=0.240 Sum_probs=131.4
Q ss_pred hcCceeEEecCCCCcccceeeccccccccCchhHHHHHHHHHHhcCCCCCCCCCCCccceeeeeeCCCcceeccccccCC
Q psy13118 18 VARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVARIPRVRGG 97 (286)
Q Consensus 18 ~~m~~i~v~~~~~~~~g~~v~lp~vf~~~ir~~lI~~~v~~~q~~gRqp~Ag~~~~g~kt~ae~~G~GRkv~RvP~~rqk 97 (286)
..||+++|||.+|+.+| +|+||+ |+|+|+||+++.+++++.|||++. .++++|+||+|||++ +||
T Consensus 4 ~~m~~v~V~~~~G~~~g-~i~L~~----~~r~dlih~~v~~~~a~~Rqgt~~-----tktraEv~G~grKp~-----rQK 68 (210)
T 3v2d_F 4 VAVYQIPVLSPSGRREL-AADLPA----EINPHLLWEVVRWQLAKRRRGTAS-----TKTRGEVAYSGRKIW-----PQK 68 (210)
T ss_dssp --CCCCCEECSSSCCCC-CCCCCS----CCCHHHHHHHHHHHHHHTCCCCCC-----CCCTTTSSCCCCCSS-----CSS
T ss_pred cccceeEEEcCCCCEee-eEecCC----cccHHHHHHHHHHHHHhccCCccC-----CCccccccCCCCCCC-----CCC
Confidence 46899999999999999 699998 999999999999999999999875 588999999999865 699
Q ss_pred CcccCCCCccccccccccccCCCchhhhhhhhhhhhhHHHHHHHHHhhccChhHHhhcCCcccccccccccccccccccc
Q psy13118 98 GTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAESWGTGRAVARIPRVR 177 (286)
Q Consensus 98 GTgrArqGa~~~~~rgGr~ahpp~~~k~~~~kiN~ker~~A~~sAiAata~~~lV~~RGH~~~~~s~~~~~~~~r~p~~~ 177 (286)
||||||||++ ++|+|+
T Consensus 69 GTGrAR~Gs~----------------------------------------------------------------rsP~~~ 84 (210)
T 3v2d_F 69 HTGRARHGDI----------------------------------------------------------------GAPIFV 84 (210)
T ss_dssp SSSSCCCCCT----------------------------------------------------------------TSTTST
T ss_pred CCCccCCCcc----------------------------------------------------------------cCCccc
Confidence 9999999999 888888
Q ss_pred CCCccccCccccCcccccceeeCCCCCCcccccccCHHHHHHHHHHHHHhccCchhhhccCccccCCCCcCEEEecCCC-
Q psy13118 178 GGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQ- 256 (286)
Q Consensus 178 ggGt~rAgqgA~aP~~rGG~~~~p~~~~r~~~~kvn~k~rr~A~~saia~~~~~~lV~~RGH~i~~v~~~~lvV~d~~~- 256 (286)
|| |++|+|+ | |+|++|||+|+|++|++||||+++. +.+|+|+|+|+
T Consensus 85 gG----------------G~~fgP~-p-R~~~~klnkK~rrlAl~sALs~k~~---------------~~~l~Vvd~~~~ 131 (210)
T 3v2d_F 85 GG----------------GVVFGPK-P-RDYSYTLPKKVRKKGLAMAVADRAR---------------EGKLLLVEAFAG 131 (210)
T ss_dssp TC----------------CCSSCCC-C-CCCCCCCCHHHHHHHHHHHHHHHHH---------------TTCEEEESCCTT
T ss_pred CC----------------eeeCCCC-C-ccceeeCCHHHHHHHHHHHHHHHHh---------------cCCEEEeccccc
Confidence 76 6777775 6 9999999999999999999999963 57899999997
Q ss_pred CcccHHHHHHHHHHCCCc
Q psy13118 257 EYKKTKQATIFLHRIKAW 274 (286)
Q Consensus 257 ~~~KTKe~~~~Lk~l~~~ 274 (286)
+.+|||+++++|++||++
T Consensus 132 ~~~KTK~~~~~L~~lg~~ 149 (210)
T 3v2d_F 132 VNGKTKEFLAWAKEAGLD 149 (210)
T ss_dssp CSSCHHHHHHHHHHTTCC
T ss_pred CCccHHHHHHHHHHcCCC
Confidence 789999999999999985
No 8
>1dmg_A Ribosomal protein L4; alpha-beta, ribosome, RNA, S10 operon, gene regulation; HET: CIT; 1.70A {Thermotoga maritima} SCOP: c.22.1.1
Probab=100.00 E-value=3.9e-39 Score=289.20 Aligned_cols=146 Identities=28% Similarity=0.344 Sum_probs=87.9
Q ss_pred ceeEEecCCCCcccceeecc-ccccccCchhHHHHHHHHHHhcCCCCCCCCCCCccceeeeeeCCCcceeccccccCCCc
Q psy13118 21 PLITVYSEKNEPTGQTVTLP-SVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVARIPRVRGGGT 99 (286)
Q Consensus 21 ~~i~v~~~~~~~~g~~v~lp-~vf~~~ir~~lI~~~v~~~q~~gRqp~Ag~~~~g~kt~ae~~G~GRkv~RvP~~rqkGT 99 (286)
|+++|||.+|+.+| +|+|| +||+.|+|+|+||+++.+++++.||||+. +++++|+||+|||+| +||||
T Consensus 1 ~~~~v~~~~g~~~g-~v~L~~~vF~~~~r~dlih~~v~~~~a~~Rqgt~~-----tktRaEv~G~GrKp~-----rQKGT 69 (225)
T 1dmg_A 1 AQVDLLNVKGEKVG-TLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTAS-----TKTRGEVSGGGRKPW-----PQKHT 69 (225)
T ss_dssp CEEEEECTTSCEEE-EEECCHHHHSSCCCHHHHHHHHHHHHC--------------------------------------
T ss_pred CeeEEEcCCCCEee-EEEcCHHHhCCCccHHHHHHHHHHHHHhccCCccc-----cceeeEeecCCCCCC-----CCCCC
Confidence 47999999999999 69999 79999999999999999999999999875 799999999999975 69999
Q ss_pred ccCCCCccccccccccccCCCchhhhhhhhhhhhhHHHHHHHHHhhccChhHHhhcCCccccccccccccccccccccCC
Q psy13118 100 HRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAESWGTGRAVARIPRVRGG 179 (286)
Q Consensus 100 grArqGa~~~~~rgGr~ahpp~~~k~~~~kiN~ker~~A~~sAiAata~~~lV~~RGH~~~~~s~~~~~~~~r~p~~~gg 179 (286)
||||||++ |+|+|+||
T Consensus 70 GrAR~Gs~----------------------------------------------------------------rsP~~rGG 85 (225)
T 1dmg_A 70 GRARHGSI----------------------------------------------------------------RSPIWRHG 85 (225)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Cccccccc----------------------------------------------------------------cCCceecC
Confidence 99999999 77777765
Q ss_pred CccccCccccCcccccceeeCCCCCCcccccccCHHHHHHHHHHHHHhccCchhhhccCccccCCCCcCEEEecCCC-Cc
Q psy13118 180 GTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQ-EY 258 (286)
Q Consensus 180 Gt~rAgqgA~aP~~rGG~~~~p~~~~r~~~~kvn~k~rr~A~~saia~~~~~~lV~~RGH~i~~v~~~~lvV~d~~~-~~ 258 (286)
|++|+|. | |+|++|||+|+|++||+|||++++. +.+|||+|+|+ +.
T Consensus 86 ----------------G~~fgPk-p-R~~~~klnkK~rrlAl~sALs~k~~---------------~~~LvVvd~~~~~~ 132 (225)
T 1dmg_A 86 ----------------GVVHGPK-P-RDWSKKLNKKMKKLALRSALSVKYR---------------ENKLLVLDDLKLER 132 (225)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHHHH---------------TTCEEEESCCCCSS
T ss_pred ----------------ceecCCc-C-ccccccCCHHHHHHHHHHHHHHHHh---------------CCCEEEEeecccCC
Confidence 5677774 6 9999999999999999999999963 67999999998 78
Q ss_pred ccHHHHHHHHHHCCCc
Q psy13118 259 KKTKQATIFLHRIKAW 274 (286)
Q Consensus 259 ~KTKe~~~~Lk~l~~~ 274 (286)
+|||+++++|+++|++
T Consensus 133 ~KTK~~~~~L~~l~~~ 148 (225)
T 1dmg_A 133 PKTKSLKEILQNLQLS 148 (225)
T ss_dssp CCHHHHHHHHHHTTCT
T ss_pred CCHHHHHHHHHHcCCC
Confidence 9999999999999985
No 9
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=2.2e-38 Score=294.22 Aligned_cols=151 Identities=26% Similarity=0.260 Sum_probs=132.1
Q ss_pred hhhhcCceeEEecCCCCcccceeecc-ccccccCchhHHHHHHHHHHhcCCCCCCCCCCCccceeeeeeCCCcceecccc
Q psy13118 15 SVGVARPLITVYSEKNEPTGQTVTLP-SVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVARIPR 93 (286)
Q Consensus 15 ~~~~~m~~i~v~~~~~~~~g~~v~lp-~vf~~~ir~~lI~~~v~~~q~~gRqp~Ag~~~~g~kt~ae~~G~GRkv~RvP~ 93 (286)
+.+.+|++++|||.+|+.+| +|+|| +||..|+|+|+||++|.+++++.|||+| ++++++|+||+|||++
T Consensus 47 ~~~~~M~~v~V~~~~G~~~g-~veLp~~VF~~~~r~dlih~vV~~q~an~RQGTa-----~tKtRaEV~GgGRKp~---- 116 (293)
T 3bbo_G 47 SIKSELIPLPILNFSGEKVG-ETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTA-----STLTRAEVRGGGRKPY---- 116 (293)
T ss_dssp ----CCEEEECCCSSSCCCS-EEEECSSSSSSCCCTTTTTTHHHHHHHHHCCCCC-----CCCSSTTCSSSCCCCC----
T ss_pred chhhcCceeEEEcCCCCEee-eEEcCHHHhCCCccHHHHHHHHHHHHHhcccccc-----cCceeeeeccCCCcee----
Confidence 56677889999999999999 69999 7999999999999999999999999975 5899999999999975
Q ss_pred ccCCCcccCCCCccccccccccccCCCchhhhhhhhhhhhhHHHHHHHHHhhccChhHHhhcCCcccccccccccccccc
Q psy13118 94 VRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAESWGTGRAVARI 173 (286)
Q Consensus 94 ~rqkGTgrArqGa~~~~~rgGr~ahpp~~~k~~~~kiN~ker~~A~~sAiAata~~~lV~~RGH~~~~~s~~~~~~~~r~ 173 (286)
|||||||||||++ |+
T Consensus 117 -RQKGTGRAR~Gs~----------------------------------------------------------------rs 131 (293)
T 3bbo_G 117 -PQKKTGRARRGSQ----------------------------------------------------------------GS 131 (293)
T ss_dssp -CCSSSCSCSCCSS----------------------------------------------------------------SC
T ss_pred -ccCCCCccccCcc----------------------------------------------------------------cC
Confidence 7999999999999 87
Q ss_pred ccccCCCccccCccccCcccccceeeCCCCCCcccccccCHHHHHHHHHHHHHhccCchhhhccCccccCCCCcCEEEec
Q psy13118 174 PRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSD 253 (286)
Q Consensus 174 p~~~ggGt~rAgqgA~aP~~rGG~~~~p~~~~r~~~~kvn~k~rr~A~~saia~~~~~~lV~~RGH~i~~v~~~~lvV~d 253 (286)
|+|+|| |++|+|. ||+|++|||+|+|++||+|||++++ ..|||+|
T Consensus 132 P~~rGG----------------GvafGPk--PRdy~~klNKK~rrlAlrsALSak~-----------------g~LvVvd 176 (293)
T 3bbo_G 132 PLRPGG----------------GVIFGPK--PRDWTIKMNKKERRLALSTAIASAV-----------------GNSFVVE 176 (293)
T ss_dssp SSSSSS----------------CCSSCCC--SCCCCCCCCSHHHHHHHHHHHHHHH-----------------HTTCCCC
T ss_pred CceecC----------------ceecCCc--CcchhhhcCHHHHHHHHHHHHHHHc-----------------CCEEEEe
Confidence 777765 5777775 4999999999999999999999995 1267889
Q ss_pred CC--C-CcccHHHHHHHHHHCCCcc
Q psy13118 254 KI--Q-EYKKTKQATIFLHRIKAWN 275 (286)
Q Consensus 254 ~~--~-~~~KTKe~~~~Lk~l~~~~ 275 (286)
+| + +.+|||+++++|++||+++
T Consensus 177 ~~~~~~~~~KTK~~~~~Lk~lg~~~ 201 (293)
T 3bbo_G 177 EFAENFEKPKTKDFIAAMQRWGLDP 201 (293)
T ss_dssp CCGGGTTCCSSHHHHTTHHHHSCSS
T ss_pred cccccccCCCHHHHHHHHHHcCCcc
Confidence 99 6 7899999999999999853
No 10
>2zjr_C 50S ribosomal protein L4; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.22.1.1 PDB: 1j5a_K* 1jzy_K* 1jzz_K* 1k01_K* 1nkw_C 1sm1_C* 2zjp_C* 2zjq_C 1jzx_K 3cf5_C* 3dll_C* 3pio_C* 3pip_C* 1nwy_C* 1nwx_C* 1xbp_C* 1pnu_C 1pny_C 1vor_F 1vou_F ...
Probab=100.00 E-value=8.6e-38 Score=276.77 Aligned_cols=142 Identities=24% Similarity=0.256 Sum_probs=129.6
Q ss_pred CceeEEecCCCCcccceeeccccccccCchhHHHHHHHHHHhcCCCCCCCCCCCccceeeeeeCCCcceeccccccCCCc
Q psy13118 20 RPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVARIPRVRGGGT 99 (286)
Q Consensus 20 m~~i~v~~~~~~~~g~~v~lp~vf~~~ir~~lI~~~v~~~q~~gRqp~Ag~~~~g~kt~ae~~G~GRkv~RvP~~rqkGT 99 (286)
|++++|||.+|+.+| +|+||+ +|+|+||+++.+++++.||||+. +++++|+||+|||++ |||||
T Consensus 1 M~~v~v~~~~g~~~g-~i~L~~-----~r~dlih~~v~~~~a~~Rqgt~~-----tktraEv~G~GrKp~-----rQKGT 64 (205)
T 2zjr_C 1 MAQINVIGQNGGRTI-ELPLPE-----VNSGVLHEVVTWQLASRRRGTAS-----TRTRAQVSKTGRKMY-----GQKGT 64 (205)
T ss_dssp -CCCCCSSCCCCCCC-CCCTTT-----CCHHHHHHHHHHHHHHHCCCCCC-----CCCCTTTSCCCSCCS-----CSSSS
T ss_pred CCeeEEEcCCCCEee-eEECCC-----chHHHHHHHHHHHHHhccccccc-----cceeeeccCCCCCCC-----CcCCC
Confidence 557999999999999 699998 99999999999999999999875 689999999999975 69999
Q ss_pred ccCCCCccccccccccccCCCchhhhhhhhhhhhhHHHHHHHHHhhccChhHHhhcCCccccccccccccccccccccCC
Q psy13118 100 HRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAESWGTGRAVARIPRVRGG 179 (286)
Q Consensus 100 grArqGa~~~~~rgGr~ahpp~~~k~~~~kiN~ker~~A~~sAiAata~~~lV~~RGH~~~~~s~~~~~~~~r~p~~~gg 179 (286)
||||||++ ++|+|+||
T Consensus 65 GrAR~Gs~----------------------------------------------------------------rsP~~~gG 80 (205)
T 2zjr_C 65 GNARHGDR----------------------------------------------------------------SVPTFVGG 80 (205)
T ss_dssp SSCCCSCS----------------------------------------------------------------CSTTSTTS
T ss_pred CCcccCcc----------------------------------------------------------------cCCcccCC
Confidence 99999999 88888876
Q ss_pred CccccCccccCcccccceeeCCCCCCcccccccCHHHHHHHHHHHHHhccCchhhhccCccccCCCCcCEEEecCCC-Cc
Q psy13118 180 GTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQ-EY 258 (286)
Q Consensus 180 Gt~rAgqgA~aP~~rGG~~~~p~~~~r~~~~kvn~k~rr~A~~saia~~~~~~lV~~RGH~i~~v~~~~lvV~d~~~-~~ 258 (286)
|++|+|+ | |+|++|||+|+|++||+|||++++. +.+|+|+|+|+ +.
T Consensus 81 ----------------G~~fgP~-p-R~~~~klnkK~rrlAl~sALs~k~~---------------~~~lvVvd~~~~~~ 127 (205)
T 2zjr_C 81 ----------------GVAFGPK-P-RSYDYTLPRQVRQLGLAMAIASRQE---------------GGKLVAVDGFDIAD 127 (205)
T ss_dssp ----------------CCTTCCC-C-CCCCCCCCHHHHHHHHHHHHHHHHH---------------TTCCBCSCCTTSCS
T ss_pred ----------------eeecCCC-C-cchhhhcCHHHHHHHHHHHHHHHhh---------------cCCEEEEeccccCC
Confidence 6788885 6 9999999999999999999999962 67899999997 78
Q ss_pred ccHHHHHHHHHHCCCc
Q psy13118 259 KKTKQATIFLHRIKAW 274 (286)
Q Consensus 259 ~KTKe~~~~Lk~l~~~ 274 (286)
+|||+++++|+++|++
T Consensus 128 ~KTK~~~~~L~~l~~~ 143 (205)
T 2zjr_C 128 AKTKNFISWAKQNGLD 143 (205)
T ss_dssp SCSHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHcCCC
Confidence 9999999999999986
No 11
>3r8s_E 50S ribosomal protein L4; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_C 1p86_C 1vs8_E 1vs6_E 2aw4_E 2awb_E 1vt2_E 2i2v_E 2j28_E 2i2t_E* 2qao_E* 2qba_E* 2qbc_E* 2qbe_E 2qbg_E 2qbi_E* 2qbk_E* 2qov_E 2qox_E 2qoz_E* ...
Probab=100.00 E-value=5.2e-36 Score=265.27 Aligned_cols=131 Identities=28% Similarity=0.325 Sum_probs=119.6
Q ss_pred eeecc-ccccccCchhHHHHHHHHHHhcCCCCCCCCCCCccceeeeeeCCCcceeccccccCCCcccCCCCccccccccc
Q psy13118 36 TVTLP-SVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAG 114 (286)
Q Consensus 36 ~v~lp-~vf~~~ir~~lI~~~v~~~q~~gRqp~Ag~~~~g~kt~ae~~G~GRkv~RvP~~rqkGTgrArqGa~~~~~rgG 114 (286)
+|+|| +||+.|+|+|+||+++.+++++.|||++. +++++|+||+|||++ +||||||||||++
T Consensus 11 ~i~L~~~vF~~~~r~dlih~~v~~~~a~~Rqgt~~-----tktraEv~G~grKp~-----rQKGTGrAR~Gs~------- 73 (201)
T 3r8s_E 11 ALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRA-----QKTRAEVTGSGKKPW-----RQKGTGRARSGSI------- 73 (201)
T ss_dssp CEECCHHHHSSCCCHHHHHHHHHHHHTTSCCCCCC-----CCBTTTSSCCCCCSS-----CSSSSSSCCCCCT-------
T ss_pred eEECCHHHhCCCCCHHHHHHHHHHHHHhCcCCCCC-----CcceeeecCCCCCCC-----ccCCCCccccCcC-------
Confidence 69999 79999999999999999999999999875 589999999999865 6999999999999
Q ss_pred cccCCCchhhhhhhhhhhhhHHHHHHHHHhhccChhHHhhcCCccccccccccccccccccccCCCccccCccccCcccc
Q psy13118 115 RMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR 194 (286)
Q Consensus 115 r~ahpp~~~k~~~~kiN~ker~~A~~sAiAata~~~lV~~RGH~~~~~s~~~~~~~~r~p~~~ggGt~rAgqgA~aP~~r 194 (286)
++|+|+||
T Consensus 74 ---------------------------------------------------------rsP~~~gG--------------- 81 (201)
T 3r8s_E 74 ---------------------------------------------------------KSPIWRSG--------------- 81 (201)
T ss_dssp ---------------------------------------------------------TCTTSTTC---------------
T ss_pred ---------------------------------------------------------cCCceeCC---------------
Confidence 88888876
Q ss_pred cceeeCCCCCCcccccccCHHHHHHHHHHHHHhccCchhhhccCccccCCCCcCEEEecCCC-CcccHHHHHHHHHHCCC
Q psy13118 195 AGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQ-EYKKTKQATIFLHRIKA 273 (286)
Q Consensus 195 GG~~~~p~~~~r~~~~kvn~k~rr~A~~saia~~~~~~lV~~RGH~i~~v~~~~lvV~d~~~-~~~KTKe~~~~Lk~l~~ 273 (286)
|++|+| +| |+|++|||+|+|++|++||||+++. +.+|+|+|+|+ +.+|||+++++|+++|+
T Consensus 82 -G~~fgP-~p-R~~~~klnkK~rrlAl~sALs~k~~---------------~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~ 143 (201)
T 3r8s_E 82 -GVTFAA-RP-QDHSQKVNKKMYRGALKSILSELVR---------------QDRLIVVEKFSVEAPKTKLLAQKLKDMAL 143 (201)
T ss_dssp -CBTTCC-CC-CCCCCCCCHHHHHHHHHHHHHHHHH---------------HTCEEECSCCCCSSSCHHHHHHHHHHHTC
T ss_pred -EeecCC-cc-ccceeccCHHHHHHHHHHHHHHHhh---------------cCCEEEeccccccCcCHHHHHHHHHHcCC
Confidence 677776 56 9999999999999999999999963 56899999997 68999999999999986
No 12
>2ftc_D Mitochondrial ribosomal protein L4 isoform A, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_D
Probab=99.97 E-value=5.9e-31 Score=228.40 Aligned_cols=116 Identities=23% Similarity=0.248 Sum_probs=104.6
Q ss_pred HHHHHHHHhcCCCCCCCCCCCccceeeeeeCCCcceeccccccCCCcccCCCCccccccccccccCCCchhhhhhhhhhh
Q psy13118 53 NFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNV 132 (286)
Q Consensus 53 ~~~v~~~q~~gRqp~Ag~~~~g~kt~ae~~G~GRkv~RvP~~rqkGTgrArqGa~~~~~rgGr~ahpp~~~k~~~~kiN~ 132 (286)
|+++.+++++.|||++. +++++|+||+|||++ +||||||||||++
T Consensus 1 h~~v~~~~a~~Rqgt~~-----tktraEv~G~grKp~-----rQKGTGrAR~Gs~------------------------- 45 (175)
T 2ftc_D 1 HQVAMWQKNFKRISYAK-----TKTRAEVRGGGRKPW-----PQKGTGRARHGSI------------------------- 45 (175)
T ss_pred CHHHHHHHHHhhcCCCC-----CcceeeecCCCCCCC-----CcCCCCccccCCC-------------------------
Confidence 57899999999999874 799999999999975 6999999999999
Q ss_pred hhHHHHHHHHHhhccChhHHhhcCCccccccccccccccccccccCCCccccCccccCcccccceeeCCCCCCccccccc
Q psy13118 133 NQRRYAMVSAIAASSVPALVMSKGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKV 212 (286)
Q Consensus 133 ker~~A~~sAiAata~~~lV~~RGH~~~~~s~~~~~~~~r~p~~~ggGt~rAgqgA~aP~~rGG~~~~p~~~~r~~~~kv 212 (286)
|+|+|+|| |++|+|+.| |+|+++|
T Consensus 46 ---------------------------------------rsP~~~gG----------------G~~fgP~~p-R~~~~kl 69 (175)
T 2ftc_D 46 ---------------------------------------RSPLWRGG----------------GVAHGPRGP-TSYYYML 69 (175)
T ss_pred ---------------------------------------cCCcccCC----------------EeecCCCCc-cchhhhc
Confidence 88888876 678887545 9999999
Q ss_pred CHHHHHHHHHHHHHhccCchhhhccCccccCCCCcCEEEecCCC-CcccHHHHHHHHHHCCCc
Q psy13118 213 NVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQ-EYKKTKQATIFLHRIKAW 274 (286)
Q Consensus 213 n~k~rr~A~~saia~~~~~~lV~~RGH~i~~v~~~~lvV~d~~~-~~~KTKe~~~~Lk~l~~~ 274 (286)
|+|+|++||+|||++++. +.+|+|+|+|+ +.+|||++.++|++++++
T Consensus 70 nkK~rrlAl~sALs~k~~---------------~~~lvVvd~~~~~~~KTK~~~~~l~~l~~~ 117 (175)
T 2ftc_D 70 PMKVRALGLKVALTVKLA---------------QDDLHIMDSLELPTGDPQYLTELAHYRRWG 117 (175)
T ss_pred CHHHHHHHHHHHHHHhcc---------------CCCEEEEecccCCCCCHHHHHHHHHHCCCC
Confidence 999999999999999963 67999999997 789999999999999974
No 13
>2wwb_H 60S ribosomal protein L4-B; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_H 2ww9_H 3izc_D 3izs_D 3o58_D 3o5h_D 3u5e_C 3u5i_C 1s1i_D 3jyw_D
Probab=99.85 E-value=5.4e-22 Score=188.92 Aligned_cols=111 Identities=41% Similarity=0.726 Sum_probs=103.3
Q ss_pred CchhHHHHHHHHHHhcCCCCCCCCCCCccceeeeeeCCCcceeccccccCCCcccCCCCccccccccccccCCCchhhhh
Q psy13118 47 IRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRW 126 (286)
Q Consensus 47 ir~~lI~~~v~~~q~~gRqp~Ag~~~~g~kt~ae~~G~GRkv~RvP~~rqkGTgrArqGa~~~~~rgGr~ahpp~~~k~~ 126 (286)
|+..+++..-..+|+++.++++|.. .|.+.|+-+.+-.| +||++ |+||.|++||+|+|+|+||+++||+.+|++|
T Consensus 35 ih~vv~~~~an~RQgt~~tk~rgev-tg~K~wGTGRArar-ipRv~---g~Gs~RSp~ga~~~~~gGG~~fgP~p~~R~~ 109 (362)
T 2wwb_H 35 VHTVFTSVNKNKRQAYAVSEKAGHQ-TSAESWGTGRAVAR-IPRVG---GGGTGRSGQGAFGNMCRGGRMFAPTKTWRKW 109 (362)
T ss_dssp HHHHHHHHHHHHCCCCCCCSSSSCS-SCCSSCCCCSSSCS-CSCCC---SCSSSSCSSTTTSSSCSSSCCSSSSCSSCCC
T ss_pred HHHHHHHHHHhccCCCCCCCccccc-ccceecCCCCCeee-ccccc---CCCCCCCcccccCCccCCeEECCCCCCCcch
Confidence 6899999999999999999999965 66677777788888 99965 7899999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHhhccChhHHhhcCCccccc
Q psy13118 127 HRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAE 162 (286)
Q Consensus 127 ~~kiN~ker~~A~~sAiAata~~~lV~~RGH~~~~~ 162 (286)
++|||+|||++|++||||++++|+||++|||+|++.
T Consensus 110 ~~klNkK~rrlAl~SALsaka~~~lv~arGH~i~~~ 145 (362)
T 2wwb_H 110 NVKVNHNEKRYATASAIAATAVASLVLARGHRVEKI 145 (362)
T ss_dssp CCCCCHHHHHHHHHHHHHGGGCSTHHHHHTCCCCSC
T ss_pred hhhcCHHHHHHHHHHHHHhccchhhhhhcccccccc
Confidence 999999999999999999999999999999999983
No 14
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_D
Probab=99.79 E-value=3.7e-20 Score=178.39 Aligned_cols=108 Identities=40% Similarity=0.591 Sum_probs=85.6
Q ss_pred CchhHHHHHHHHHHhcCCCCCCC------CCCCccceee--eee--CCCcceeccccccCCCcccCCCCccccccccccc
Q psy13118 47 IRPDVVNFVHQNLSKNHRQPYAV------SKDAGHQTSA--ESW--GTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRM 116 (286)
Q Consensus 47 ir~~lI~~~v~~~q~~gRqp~Ag------~~~~g~kt~a--e~~--G~GRkv~RvP~~rqkGTgrArqGa~~~~~rgGr~ 116 (286)
|+..+++..-..+|+++.+++|| +|+.|++.+. ... |+||. +|+-+ +-+ |+||++
T Consensus 41 Ih~vV~~~~an~RQgt~~tk~AG~~traEv~GtGRk~~RipRQKG~GTgRA-------r~gs~-----~~~---~gGGr~ 105 (405)
T 3iz5_D 41 VRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRA-------GQGAF-----GNM---CRGGRM 105 (405)
T ss_dssp HHHHHHHHHHTCSCCCCSCTTTTTCSCCCCCCSSSSSCSSCCCCCCSSSCC-------CSCCS-----SSS---STTCCC
T ss_pred HHHHHHHHHHhhhcCcCCCccccCCccceecCCCCCccccccccCCCCCcc-------CCCCC-----CCc---cCCeEE
Confidence 58899999999999999999777 5566665442 112 44442 22222 245 689999
Q ss_pred cCCCchhhhhhhhhhhhhHHHHHHHHHhhccChhHHhhcCCccccc------------ccccccc
Q psy13118 117 FAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAE------------SWGTGRA 169 (286)
Q Consensus 117 ahpp~~~k~~~~kiN~ker~~A~~sAiAata~~~lV~~RGH~~~~~------------s~~~~~~ 169 (286)
++|+.+|++|+++||+|||++|++||||+++.|+||+.|||+|+.. +..+||+
T Consensus 106 fgP~p~~R~y~~klNKK~rrlAlrSALSaka~~~lV~aRghri~~v~e~~LVV~D~~~~~~KTK~ 170 (405)
T 3iz5_D 106 FAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQ 170 (405)
T ss_dssp SSSCCSCCCCCCCCCHHHHHHHHHHHHHHTTCHHHHHHHTCCCCCCSSSSEEECTTSSSCCCHHH
T ss_pred cCCCCCCccceeecCHHHHHHHHHHHHHHhcchhhhhhccccccccccCCEEEEecCcccCChHH
Confidence 9999999999999999999999999999999999999999999431 5667777
No 15
>1vq8_C 50S ribosomal protein L4E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.22.1.1 PDB: 1k73_E* 1k8a_E* 1k9m_E* 1kc8_E* 1kd1_E* 1kqs_C* 1m1k_E* 1m90_E* 1n8r_E* 1nji_E* 1q7y_E* 1q81_E* 1q82_E* 1q86_E* 1qvf_C 1qvg_C 1s72_C* 1vq4_C* 1vq5_C* 1vq6_C* ...
Probab=99.75 E-value=3.4e-19 Score=162.15 Aligned_cols=103 Identities=19% Similarity=0.203 Sum_probs=82.6
Q ss_pred CchhHHHHHHHHHHhcCCCCCCCCCCCccceeeeeeCCCcceeccccccCCCcccCCCCccccccccccccCCCchhhhh
Q psy13118 47 IRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRW 126 (286)
Q Consensus 47 ir~~lI~~~v~~~q~~gRqp~Ag~~~~g~kt~ae~~G~GRkv~RvP~~rqkGTgrArqGa~~~~~rgGr~ahpp~~~k~~ 126 (286)
|+..++++.-..+|++++++.+|..+.+.- ++-..+..| +||.++. .- +.|+||||+++|||++|++|
T Consensus 31 i~~~v~~~~an~Rqgt~~~~~aG~kt~ae~-~GtGR~~ar-i~rqKG~-ar---------rsP~~rGGg~~~gPkp~R~~ 98 (246)
T 1vq8_C 31 IGKAVRAAQANRKQDYGSDEYAGLRTPAES-FGSGRGQAH-VPKLDGR-AR---------RVPQAVKGRSAHPPKTEKDR 98 (246)
T ss_dssp HHHHHHHHHHHTCCCCCCCTTTTTCCCCBC-CCSSSSCCC-CCEETTE-EC---------SSTTSTTCCCSSCCCTTCCC
T ss_pred HHHHHHHHHHhcccCcccccccCcccceee-ccCCCCccc-cccccCc-cc---------cCCccCCCeeecCCCCCccc
Confidence 689999999999999999999985333321 333333333 3333221 10 35899999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHhhccChhHHhhcCCcccc
Q psy13118 127 HRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSA 161 (286)
Q Consensus 127 ~~kiN~ker~~A~~sAiAata~~~lV~~RGH~~~~ 161 (286)
+.|||+|||++|++||||+++.|+||++|||+|++
T Consensus 99 ~~klnkK~rrlAl~sALsa~~~~~lv~~rGh~~~~ 133 (246)
T 1vq8_C 99 SLDLNDKERQLAVRSALAATADADLVADRGHEFDR 133 (246)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTCHHHHHHHTCCCCC
T ss_pred hhhcCHHHHHHHHHHHHHHhhhhhhhhhccccccc
Confidence 99999999999999999999999999999999998
No 16
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.71 E-value=4.6e-18 Score=164.44 Aligned_cols=111 Identities=36% Similarity=0.591 Sum_probs=84.8
Q ss_pred CchhHHHHHHHHHHhcCCCCCCCCCCCccceeeeeeCCCcceeccccccCCCcccCCCCccccccccccccCCCchhhhh
Q psy13118 47 IRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRW 126 (286)
Q Consensus 47 ir~~lI~~~v~~~q~~gRqp~Ag~~~~g~kt~ae~~G~GRkv~RvP~~rqkGTgrArqGa~~~~~rgGr~ahpp~~~k~~ 126 (286)
|+..+++..-..+|+++.+|+||..+.+.- ++-..+.-| +||++..--+..+....++. ||||+++||+++|++|
T Consensus 37 Ih~vV~~~~an~RQgta~t~~AG~KTraEv-~G~GRKp~R-iPRv~QKGTGRARqGs~rs~---~RGGr~fgP~kp~R~~ 111 (421)
T 2zkr_c 37 VNFVHTNLRKNNRQPYAVSELAGHQTSAES-WGTGRAVAR-IPRVRGGGTHRSGQGAFGNM---CRGGRMFAPTKTWRRW 111 (421)
T ss_dssp HHHHHHHHHHTTCCCCCCCSCTTTCSCCCC-CCSSSSSCC-SCCBTTTTBCCCSTTCCTTS---TTCCCCSSCCCSSSCC
T ss_pred HHHHHHHHHHhccCCCCcCcccCCcceeEe-cCCCCCcCC-cccccCCCCCccCccccccc---cccceeeCCCCCCcch
Confidence 688999999999999999999994444432 333333334 55554321111111222335 5799999999999999
Q ss_pred hhhhhhhhHHHHHHHHHhhccChhHHhhcCCccccc
Q psy13118 127 HRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAE 162 (286)
Q Consensus 127 ~~kiN~ker~~A~~sAiAata~~~lV~~RGH~~~~~ 162 (286)
+++||+|||++|++||||++++|+||++|||+|++.
T Consensus 112 ~~KlNkK~rrlAlrSALSaka~~~LV~aRGH~i~~~ 147 (421)
T 2zkr_c 112 HRRVNTTQKRYAICSALACLSLPALVMSKGHRIEEV 147 (421)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCHHHHHHTTCCCCSC
T ss_pred hhhcCHHHHHHHHHHHHHhcccchhhhhcccccccc
Confidence 999999999999999999999999999999999883
No 17
>3j21_D 50S ribosomal protein L4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.70 E-value=5.4e-18 Score=155.02 Aligned_cols=97 Identities=27% Similarity=0.349 Sum_probs=81.9
Q ss_pred CchhHHHHHHHHHHhcCCCCCCC------CCCCccceee--eeeCC-CcceeccccccCCCcccCCCCcccccccccccc
Q psy13118 47 IRPDVVNFVHQNLSKNHRQPYAV------SKDAGHQTSA--ESWGT-GRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMF 117 (286)
Q Consensus 47 ir~~lI~~~v~~~q~~gRqp~Ag------~~~~g~kt~a--e~~G~-GRkv~RvP~~rqkGTgrArqGa~~~~~rgGr~a 117 (286)
|+..+++.....+|++++.++|| +|+.|++... ...|+ |++. | + |+||||+++
T Consensus 31 i~~~v~~~~an~Rq~~Gt~~~ag~ktraev~G~Gr~~ar~~RqKGtgGrAr-r---s--------------P~~rGGg~~ 92 (255)
T 3j21_D 31 IRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHSMARVERLKTPPRYAA-F---V--------------PFARGGRRT 92 (255)
T ss_dssp HHHHHHHHHHHTCCCCCCCSSTTSSSCCBCCCSSSSSCCCCBCSSSCCCCS-S---C--------------SSSTTCCCS
T ss_pred HHHHHHHHHHhccccccCCcccCcccceeecCCCCCcCcCCccCCCCCccc-c---C--------------ccccCCeee
Confidence 68899999999999999999888 5555554211 22366 6632 2 2 578999999
Q ss_pred CCCchhhhhhhhhhhhhHHHHHHHHHhhccChhHHhhcCCcccc
Q psy13118 118 APTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSA 161 (286)
Q Consensus 118 hpp~~~k~~~~kiN~ker~~A~~sAiAata~~~lV~~RGH~~~~ 161 (286)
|||++|++|++|||+|||++|++||||+++.++||++|||+|++
T Consensus 93 ~gPkp~R~~~~klNkK~rrlAl~sALsa~~~~~lv~~rgh~~~~ 136 (255)
T 3j21_D 93 HPPKVEKIIWEDINKKEKRLALMSAIAATANYDLVRARGHIIDN 136 (255)
T ss_dssp SCCCTTSCCCCCCCHHHHHHHHHHHHHHTTCHHHHHHHTCCCSC
T ss_pred cCCCCCcccceecCHHHHHHHHHHHHHHHhhcccchhccccccc
Confidence 99999999999999999999999999999999999999999998
No 18
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_C 4a1c_C 4a1e_C
Probab=99.59 E-value=3.8e-16 Score=150.75 Aligned_cols=100 Identities=35% Similarity=0.512 Sum_probs=80.1
Q ss_pred CchhHHHHHHHHHHhcCCCCC----CC------CCCCccceeee----eeCCCcceeccccccCCCcccCCCCccccccc
Q psy13118 47 IRPDVVNFVHQNLSKNHRQPY----AV------SKDAGHQTSAE----SWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR 112 (286)
Q Consensus 47 ir~~lI~~~v~~~q~~gRqp~----Ag------~~~~g~kt~ae----~~G~GRkv~RvP~~rqkGTgrArqGa~~~~~r 112 (286)
|+..+++..-..+|+++.+|+ |+ +|+.|++.+.. ..|+||+ +|+-+ + .+ |+
T Consensus 38 Ih~vV~~~~anrRQ~~~~~~~~rGTa~tktraEv~GtGRk~~RiPR~~QKGTGRA-------RqGs~---r--P~---~r 102 (410)
T 4a17_C 38 VHKVFTDLNKNRKQASGVKISTRGTAGMGHSAESWGTGRAVARIPRVGGSGTHRS-------GQAAF---G--NQ---CR 102 (410)
T ss_dssp HHHHHHHHHHTTCCCCCCCBCSSCBTTCCSCEEECCGGGSSCSSEEECCSSSTTT-------TCBCS---S--TT---SS
T ss_pred HHHHHHHHHHhCcCcccCCCcccccccCCccceeCCCCCCccccccccCCCCCcc-------ccccc---C--Cc---cC
Confidence 688999999999999999998 77 44555554421 1244442 23222 1 36 68
Q ss_pred cccccCCCchhhhhhhhhhhhhHHHHHHHHHhhccChhHHhhcCCcccc
Q psy13118 113 AGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSA 161 (286)
Q Consensus 113 gGr~ahpp~~~k~~~~kiN~ker~~A~~sAiAata~~~lV~~RGH~~~~ 161 (286)
||+++||+.+|++|+++||+|||++|++||||+++.|+||++|||+|+.
T Consensus 103 GGr~fgP~p~~R~y~~KlNKK~rrlAlrSALSaka~~~lV~aRgh~i~~ 151 (410)
T 4a17_C 103 KGRMFAPLKTYRRVHRRVNVNQKRHAVAAALAASALVPLVFARGHRISN 151 (410)
T ss_dssp SCCCSSCCCSCCCCCCCCCHHHHHHHHHHHHHHHTCHHHHHHTTCCCTT
T ss_pred CeEEcCCCCCccchhhhhCHHHHHHHHHHHHHHhcchhhhhhccccccc
Confidence 9999999999999999999999999999999999999999999999944
No 19
>3v2d_F 50S ribosomal protein L4; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_F 2hgj_F 2hgu_F 2j03_F 2jl6_F 2jl8_F 2v47_F 2v49_F 2wdi_F 2wdj_F 2wdl_F 2wdn_F 2wh2_F 2wh4_F 2wrj_F 2wrl_F 2wro_F 2wrr_F 2x9s_F 2x9u_F ...
Probab=98.70 E-value=4.2e-09 Score=93.79 Aligned_cols=103 Identities=17% Similarity=0.118 Sum_probs=76.5
Q ss_pred CchhHHHHHHHHHHhcCCCCCCC-CCCCccceeeeeeCCCcceeccccccCCCcccCCCCccccccccccccCCCchhhh
Q psy13118 47 IRPDVVNFVHQNLSKNHRQPYAV-SKDAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRR 125 (286)
Q Consensus 47 ir~~lI~~~v~~~q~~gRqp~Ag-~~~~g~kt~ae~~G~GRkv~RvP~~rqkGTgrArqGa~~~~~rgGr~ahpp~~~k~ 125 (286)
|+..++++.-..+|...-+.+-+ .++.|.|-+ ...|+||+ || |+ .|..-+ +||..+|+|++ ++
T Consensus 33 ih~~v~~~~a~~Rqgt~~tktraEv~G~grKp~-rQKGTGrA-------R~-Gs--~rsP~~----~gGG~~fgP~p-R~ 96 (210)
T 3v2d_F 33 LWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIW-PQKHTGRA-------RH-GD--IGAPIF----VGGGVVFGPKP-RD 96 (210)
T ss_dssp HHHHHHHHHHHTCCCCCCCCCTTTSSCCCCCSS-CSSSSSSC-------CC-CC--TTSTTS----TTCCCSSCCCC-CC
T ss_pred HHHHHHHHHHhccCCccCCCccccccCCCCCCC-CCCCCCcc-------CC-Cc--ccCCcc----cCCeeeCCCCC-cc
Confidence 57888999999999877666443 777887755 34688884 23 22 233333 88999999998 99
Q ss_pred hhhhhhhhhHHHHHHHHHhhccChhHHhhcCCccccc--ccccccc
Q psy13118 126 WHRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAE--SWGTGRA 169 (286)
Q Consensus 126 ~~~kiN~ker~~A~~sAiAata~~~lV~~RGH~~~~~--s~~~~~~ 169 (286)
|+.|||+|||++|++||||+++..+ +-|.+++. +..+||+
T Consensus 97 ~~~klnkK~rrlAl~sALs~k~~~~----~l~Vvd~~~~~~~KTK~ 138 (210)
T 3v2d_F 97 YSYTLPKKVRKKGLAMAVADRAREG----KLLLVEAFAGVNGKTKE 138 (210)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTT----CEEEESCCTTCSSCHHH
T ss_pred ceeeCCHHHHHHHHHHHHHHHHhcC----CEEEecccccCCccHHH
Confidence 9999999999999999999998753 44666654 3556666
No 20
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=98.70 E-value=6e-09 Score=97.18 Aligned_cols=86 Identities=22% Similarity=0.343 Sum_probs=67.9
Q ss_pred cCchhHHHHHHHHHHhcCCCCCCC-CCCCccceeeeeeCCCcceeccccccCCCcccCCCCccccccccccccCCCchhh
Q psy13118 46 PIRPDVVNFVHQNLSKNHRQPYAV-SKDAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWR 124 (286)
Q Consensus 46 ~ir~~lI~~~v~~~q~~gRqp~Ag-~~~~g~kt~ae~~G~GRkv~RvP~~rqkGTgrArqGa~~~~~rgGr~ahpp~~~k 124 (286)
=|+..+++..-..+|...-.-+-+ .++.|+|-+ .-.|+||+ || |.-|+- +||||.++|||+ +|
T Consensus 83 lih~vV~~q~an~RQGTa~tKtRaEV~GgGRKp~-RQKGTGRA-------R~-Gs~rsP------~~rGGGvafGPk-PR 146 (293)
T 3bbo_G 83 VVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPY-PQKKTGRA-------RR-GSQGSP------LRPGGGVIFGPK-PR 146 (293)
T ss_dssp TTTTHHHHHHHHHCCCCCCCCSSTTCSSSCCCCC-CCSSSCSC-------SC-CSSSCS------SSSSSCCSSCCC-SC
T ss_pred HHHHHHHHHHHhcccccccCceeeeeccCCCcee-ccCCCCcc-------cc-CcccCC------ceecCceecCCc-Cc
Confidence 368899999999999876554444 778888865 45688884 23 221221 369999999999 89
Q ss_pred hhhhhhhhhhHHHHHHHHHhhcc
Q psy13118 125 RWHRKVNVNQRRYAMVSAIAASS 147 (286)
Q Consensus 125 ~~~~kiN~ker~~A~~sAiAata 147 (286)
.|+.|||+|+|++|++|||++++
T Consensus 147 dy~~klNKK~rrlAlrsALSak~ 169 (293)
T 3bbo_G 147 DWTIKMNKKERRLALSTAIASAV 169 (293)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHHH
T ss_pred chhhhcCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999
No 21
>2zjr_C 50S ribosomal protein L4; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.22.1.1 PDB: 1j5a_K* 1jzy_K* 1jzz_K* 1k01_K* 1nkw_C 1sm1_C* 2zjp_C* 2zjq_C 1jzx_K 3cf5_C* 3dll_C* 3pio_C* 3pip_C* 1nwy_C* 1nwx_C* 1xbp_C* 1pnu_C 1pny_C 1vor_F 1vou_F ...
Probab=98.69 E-value=6.4e-09 Score=92.13 Aligned_cols=104 Identities=14% Similarity=0.103 Sum_probs=75.7
Q ss_pred CchhHHHHHHHHHHhcCCCCCCC-CCCCccceeeeeeCCCcceeccccccCCCcccCCCCccccccccccccCCCchhhh
Q psy13118 47 IRPDVVNFVHQNLSKNHRQPYAV-SKDAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRR 125 (286)
Q Consensus 47 ir~~lI~~~v~~~q~~gRqp~Ag-~~~~g~kt~ae~~G~GRkv~RvP~~rqkGTgrArqGa~~~~~rgGr~ahpp~~~k~ 125 (286)
|+..+++..-..+|.+..+.+-+ +++.|++-+ .-.|+||+ || |+.|+ .- .+||..+|+|++ ++
T Consensus 27 ih~~v~~~~a~~Rqgt~~tktraEv~G~GrKp~-rQKGTGrA-------R~-Gs~rs--P~----~~gGG~~fgP~p-R~ 90 (205)
T 2zjr_C 27 LHEVVTWQLASRRRGTASTRTRAQVSKTGRKMY-GQKGTGNA-------RH-GDRSV--PT----FVGGGVAFGPKP-RS 90 (205)
T ss_dssp HHHHHHHHHHHHCCCCCCCCCCTTTSCCCSCCS-CSSSSSSC-------CC-SCSCS--TT----STTSCCTTCCCC-CC
T ss_pred HHHHHHHHHHhccccccccceeeeccCCCCCCC-CcCCCCCc-------cc-CcccC--Cc----ccCCeeecCCCC-cc
Confidence 57889999999999988776665 778887754 34688884 22 22222 22 288889999997 99
Q ss_pred hhhhhhhhhHHHHHHHHHhhccChhHHhhcCCccccc--cccccccc
Q psy13118 126 WHRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAE--SWGTGRAV 170 (286)
Q Consensus 126 ~~~kiN~ker~~A~~sAiAata~~~lV~~RGH~~~~~--s~~~~~~~ 170 (286)
|+.|||+|||++|++||||+++..+ +=+.+++. +..+||++
T Consensus 91 ~~~klnkK~rrlAl~sALs~k~~~~----~lvVvd~~~~~~~KTK~~ 133 (205)
T 2zjr_C 91 YDYTLPRQVRQLGLAMAIASRQEGG----KLVAVDGFDIADAKTKNF 133 (205)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTT----CCBCSCCTTSCSSCSHHH
T ss_pred hhhhcCHHHHHHHHHHHHHHHhhcC----CEEEEeccccCCCCHHHH
Confidence 9999999999999999999998632 33344443 45566663
No 22
>2ftc_D Mitochondrial ribosomal protein L4 isoform A, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_D
Probab=98.69 E-value=1.2e-08 Score=88.51 Aligned_cols=86 Identities=17% Similarity=0.135 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHHhcCCCCCCC-CCCCccceeeeeeCCCcceeccccccCCCcccCCCCccccccccccccCCCchhhhhh
Q psy13118 49 PDVVNFVHQNLSKNHRQPYAV-SKDAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWH 127 (286)
Q Consensus 49 ~~lI~~~v~~~q~~gRqp~Ag-~~~~g~kt~ae~~G~GRkv~RvP~~rqkGTgrArqGa~~~~~rgGr~ahpp~~~k~~~ 127 (286)
..++++...++|..+...+-+ .++.|+|-+ .-.|+||+ || |+-|+ -- .+||..+|+|+..+.|+
T Consensus 2 ~~v~~~~a~~Rqgt~~tktraEv~G~grKp~-rQKGTGrA-------R~-Gs~rs--P~----~~gGG~~fgP~~pR~~~ 66 (175)
T 2ftc_D 2 QVAMWQKNFKRISYAKTKTRAEVRGGGRKPW-PQKGTGRA-------RH-GSIRS--PL----WRGGGVAHGPRGPTSYY 66 (175)
T ss_pred HHHHHHHHHhhcCCCCCcceeeecCCCCCCC-CcCCCCcc-------cc-CCCcC--Cc----ccCCEeecCCCCccchh
Confidence 467788888888888766655 677777754 34588884 22 22222 22 28899999999669999
Q ss_pred hhhhhhhHHHHHHHHHhhccCh
Q psy13118 128 RKVNVNQRRYAMVSAIAASSVP 149 (286)
Q Consensus 128 ~kiN~ker~~A~~sAiAata~~ 149 (286)
.|||+|||++|++|||++++..
T Consensus 67 ~klnkK~rrlAl~sALs~k~~~ 88 (175)
T 2ftc_D 67 YMLPMKVRALGLKVALTVKLAQ 88 (175)
T ss_pred hhcCHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999873
No 23
>1dmg_A Ribosomal protein L4; alpha-beta, ribosome, RNA, S10 operon, gene regulation; HET: CIT; 1.70A {Thermotoga maritima} SCOP: c.22.1.1
Probab=98.61 E-value=8.3e-09 Score=92.69 Aligned_cols=86 Identities=22% Similarity=0.269 Sum_probs=32.2
Q ss_pred CchhHHHHHHHHHHhcCCCCCCC-CCCCccceeeeeeCCCcceeccccccCCCcccCCCCccccccccccccCCCchhhh
Q psy13118 47 IRPDVVNFVHQNLSKNHRQPYAV-SKDAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRR 125 (286)
Q Consensus 47 ir~~lI~~~v~~~q~~gRqp~Ag-~~~~g~kt~ae~~G~GRkv~RvP~~rqkGTgrArqGa~~~~~rgGr~ahpp~~~k~ 125 (286)
++..++++....+|.+...-+-+ .++.|+|-+ ...|+||+ || |+-|+- +||||.++|+|++ +.
T Consensus 32 ih~~v~~~~a~~Rqgt~~tktRaEv~G~GrKp~-rQKGTGrA-------R~-Gs~rsP------~~rGGG~~fgPkp-R~ 95 (225)
T 1dmg_A 32 MWRYVDMQLSNRRAGTASTKTRGEVSGGGRKPW-PQKHTGRA-------RH-GSIRSP------IWRHGGVVHGPKP-RD 95 (225)
T ss_dssp HHHHHHHHHC---------------------------------------------------------------------C
T ss_pred HHHHHHHHHHhccCCccccceeeEeecCCCCCC-CCCCCCcc-------cc-ccccCC------ceecCceecCCcC-cc
Confidence 58899999999999988766655 677777754 33688884 22 111111 3699999999997 99
Q ss_pred hhhhhhhhhHHHHHHHHHhhccC
Q psy13118 126 WHRKVNVNQRRYAMVSAIAASSV 148 (286)
Q Consensus 126 ~~~kiN~ker~~A~~sAiAata~ 148 (286)
|+.|||+|||++|++|||++++.
T Consensus 96 ~~~klnkK~rrlAl~sALs~k~~ 118 (225)
T 1dmg_A 96 WSKKLNKKMKKLALRSALSVKYR 118 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999987
No 24
>3r8s_E 50S ribosomal protein L4; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_C 1p86_C 1vs8_E 1vs6_E 2aw4_E 2awb_E 1vt2_E 2i2v_E 2j28_E 2i2t_E* 2qao_E* 2qba_E* 2qbc_E* 2qbe_E 2qbg_E 2qbi_E* 2qbk_E* 2qov_E 2qox_E 2qoz_E* ...
Probab=98.60 E-value=7.2e-09 Score=91.78 Aligned_cols=103 Identities=20% Similarity=0.185 Sum_probs=75.0
Q ss_pred CchhHHHHHHHHHHhcCCCCCCC-CCCCccceeeeeeCCCcceeccccccCCCcccCCCCccccccccccccCCCchhhh
Q psy13118 47 IRPDVVNFVHQNLSKNHRQPYAV-SKDAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRR 125 (286)
Q Consensus 47 ir~~lI~~~v~~~q~~gRqp~Ag-~~~~g~kt~ae~~G~GRkv~RvP~~rqkGTgrArqGa~~~~~rgGr~ahpp~~~k~ 125 (286)
|+..+++..-..+|...-+.+-+ .++.|+|-+ ...|+||+ || |+ .|..-+ +||..+|+|++ ++
T Consensus 28 ih~~v~~~~a~~Rqgt~~tktraEv~G~grKp~-rQKGTGrA-------R~-Gs--~rsP~~----~gGG~~fgP~p-R~ 91 (201)
T 3r8s_E 28 VHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPW-RQKGTGRA-------RS-GS--IKSPIW----RSGGVTFAARP-QD 91 (201)
T ss_dssp HHHHHHHHHTTSCCCCCCCCBTTTSSCCCCCSS-CSSSSSSC-------CC-CC--TTCTTS----TTCCBTTCCCC-CC
T ss_pred HHHHHHHHHHhCcCCCCCCcceeeecCCCCCCC-ccCCCCcc-------cc-Cc--CcCCce----eCCEeecCCcc-cc
Confidence 57888888888888877665554 667777754 34688884 23 22 222323 88889999998 99
Q ss_pred hhhhhhhhhHHHHHHHHHhhccChhHHhhcCCcccccc--cccccc
Q psy13118 126 WHRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAES--WGTGRA 169 (286)
Q Consensus 126 ~~~kiN~ker~~A~~sAiAata~~~lV~~RGH~~~~~s--~~~~~~ 169 (286)
|+.|||+|||++|++||||+++..+ +-|.+++.. ..+||+
T Consensus 92 ~~~klnkK~rrlAl~sALs~k~~~~----~l~Vvd~~~~~~~KTK~ 133 (201)
T 3r8s_E 92 HSQKVNKKMYRGALKSILSELVRQD----RLIVVEKFSVEAPKTKL 133 (201)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHT----CEEECSCCCCSSSCHHH
T ss_pred ceeccCHHHHHHHHHHHHHHHhhcC----CEEEeccccccCcCHHH
Confidence 9999999999999999999998643 446666543 345555
Done!