BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1312
(213 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZKR|WW Chain w, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 270
Score = 201 bits (511), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 111/237 (46%), Positives = 141/237 (59%), Gaps = 49/237 (20%)
Query: 25 LPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIR 84
+P VPE++ KKR+ ++ L KK RK + + I+ +A+ Y K YR R EIR
Sbjct: 33 VPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIR 92
Query: 85 LMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV 144
+ R A+K GN+Y+P E KLAFVIRIRGIN V+PKVRK LQLLRLRQI NG FV+LNK S+
Sbjct: 93 MARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASI 152
Query: 145 -------------------------------------------------GKQNIICVEDL 155
GK IIC+EDL
Sbjct: 153 NMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFGIICMEDL 212
Query: 156 IHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNREDKINKLLRKM 212
IHE++TVG FK A+N LWPFKL++P GG +KKT H+VEGGD GNRED+IN+L+R+M
Sbjct: 213 IHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRM 269
>pdb|3IZR|EE Chain e, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 244
Score = 174 bits (441), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 136/238 (57%), Gaps = 55/238 (23%)
Query: 27 VVPESVLKKRKKRENSRIISLHKKLTALANRKK---KTREIFIRAEKYVKAYRAKERDEI 83
VPE V+ KR++ E + + KK A + K T+ I+ RAE+Y Y A++++ +
Sbjct: 9 AVPEKVILKRRREE---VWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELV 65
Query: 84 RLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVS 143
+L REA+ +G +Y+ EAK FV+RIRGIN + PK +K LQLLRLRQI NG+F+++NK +
Sbjct: 66 QLKREARMKGGFYVSPEAKPLFVVRIRGINAMHPKTKKILQLLRLRQIFNGVFLKVNKAT 125
Query: 144 V-------------------------------------------------GKQNIICVED 154
+ GK NIIC+ED
Sbjct: 126 INMLRRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIPLANNKVIEEGLGKHNIICIED 185
Query: 155 LIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNREDKINKLLRKM 212
L+HE+ TVG +FK A+N LWPFKL P GG +KK HYVEGGD GNRE+ IN+L+R+M
Sbjct: 186 LVHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINQLVRRM 243
>pdb|4A17|V Chain V, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 2.
pdb|4A1A|V Chain V, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 3.
pdb|4A1C|V Chain V, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 4.
pdb|4A1E|V Chain V, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 1
Length = 239
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 126/235 (53%), Gaps = 49/235 (20%)
Query: 28 VPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLMR 87
VPE+V KK + E R ++ + A K++ E +A+KY Y A E+ + R
Sbjct: 5 VPENVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKR 64
Query: 88 EAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKV----- 142
+A+K G +Y+P EAK+AF IRIRG+N++ P V++ L+L RLRQ++NG F R+NK
Sbjct: 65 KARKTGAFYVPAEAKVAFAIRIRGVNQLHPDVKRVLRLFRLRQLHNGAFFRVNKASLNMI 124
Query: 143 --------------------------------------------SVGKQNIICVEDLIHE 158
S+GK I CVEDLIHE
Sbjct: 125 KRVLPFITFGYPTRNTISKLIYKRGFAKVNGQRIPLTDNTIVEKSLGKFGITCVEDLIHE 184
Query: 159 VFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNREDKINKLLRKMV 213
+ TVG +FK A+N LWPFKL+ P GG+R K Y +GGD+GNRE IN L++ M+
Sbjct: 185 ITTVGPHFKEANNFLWPFKLDTPRGGFRNKRHAYHQGGDWGNREVYINDLVKAML 239
>pdb|3IZS|EE Chain e, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O58|G Chain G, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O5H|G Chain G, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5E|F Chain F, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|F Chain F, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|F Chain F, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 244
Score = 154 bits (388), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 127/237 (53%), Gaps = 51/237 (21%)
Query: 27 VVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLM 86
+ PES LKK K ++ + ++ A K+K I R Y K Y ER+ I+
Sbjct: 7 LTPESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAK 66
Query: 87 REAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVS--- 143
R+AK G+YY+ + KL FV+RI+GIN++ PK RK LQLLRL +IN+G FV++ K +
Sbjct: 67 RDAKAAGSYYVEAQHKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLEL 126
Query: 144 ----------------------------------------------VGKQNIICVEDLIH 157
+GK I+ ++DLIH
Sbjct: 127 LKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILSIDDLIH 186
Query: 158 EVFTVGDNFKYASNALWPFKLNNPTGGW--RKKTIHYVEGGDFGNREDKINKLLRKM 212
E+ TVG +FK A+N LWPFKL+NP+GGW +K H+++GG FGNRE+ INKL++ M
Sbjct: 187 EIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKLVKSM 243
>pdb|3ZF7|WW Chain w, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 257
Score = 137 bits (346), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 105/198 (53%), Gaps = 49/198 (24%)
Query: 65 FIRAEKYVKAYRAKERDEIRLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQ 124
+ R KY + YR+ E+ L R A++ GNYY+ + K+A V RIRGI +V PK RK LQ
Sbjct: 60 YSRGLKYSREYRSTEKKLAGLRRNARQHGNYYLEAKPKVAVVTRIRGIAKVPPKQRKILQ 119
Query: 125 LLRLRQINNGIFVRLNK------------VSVG--------------------------- 145
LLRLRQI N +FVRLNK ++ G
Sbjct: 120 LLRLRQIFNTVFVRLNKPMENMLRAVEPYIAYGYPSLSTVRAMVYKRGHLKINGQRVKIT 179
Query: 146 ----------KQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEG 195
+I+C ED++++++ G +F+ +N LWPFKL P GG R+K H+VEG
Sbjct: 180 DNQMIKDKYHNDDIVCAEDIVNQIYACGKHFRTVTNGLWPFKLAPPAGGMRQKRRHFVEG 239
Query: 196 GDFGNREDKINKLLRKMV 213
GD+GNR+ IN+ L +M+
Sbjct: 240 GDYGNRDTLINRFLARMI 257
>pdb|1S1I|F Chain F, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is
In File 1s1h
Length = 162
Score = 119 bits (299), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 89/161 (55%), Gaps = 51/161 (31%)
Query: 103 LAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV------------------ 144
L FV+RI+GIN++ PK RK LQLLRL +IN+G FV++ K ++
Sbjct: 1 LVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYS 60
Query: 145 -------------------------------GKQNIICVEDLIHEVFTVGDNFKYASNAL 173
GK I+ ++DLIHE+ TVG +FK A+N L
Sbjct: 61 TIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFL 120
Query: 174 WPFKLNNPTGGW--RKKTIHYVEGGDFGNREDKINKLLRKM 212
WPFKL+NP+GGW +K H+++GG FGNRE+ INKL++ M
Sbjct: 121 WPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKLVKSM 161
>pdb|3JYW|F Chain F, Structure Of The 60s Proteins For Eukaryotic Ribosome
Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome
At 8.9a Resolution
Length = 213
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 89/161 (55%), Gaps = 51/161 (31%)
Query: 103 LAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV------------------ 144
L FV+RI+GIN++ PK RK LQLLRL +IN+G FV++ K ++
Sbjct: 52 LVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYS 111
Query: 145 -------------------------------GKQNIICVEDLIHEVFTVGDNFKYASNAL 173
GK I+ ++DLIHE+ TVG +FK A+N L
Sbjct: 112 TIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFL 171
Query: 174 WPFKLNNPTGGW--RKKTIHYVEGGDFGNREDKINKLLRKM 212
WPFKL+NP+GGW +K H+++GG FGNRE+ INKL++ M
Sbjct: 172 WPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKLVKSM 212
>pdb|3J21|Y Chain Y, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 155
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 67/155 (43%), Gaps = 43/155 (27%)
Query: 101 AKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFV--------RLNK----VSVGKQN 148
AKLA VIRIRG V VR TL +LRL ++N+ + V L K ++ G+ N
Sbjct: 2 AKLA-VIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEIN 60
Query: 149 I-----------------------------ICVEDLIHEVFTVGDNFKYASNALWPFKLN 179
+ +E+ +V + K N F+L+
Sbjct: 61 AETLAKLIRKRGRLIGNKPVTDEYVKEKLGMTIEEFAQKVVNGEMSLKDLPNLKPVFRLH 120
Query: 180 NPTGGWR-KKTIHYVEGGDFGNREDKINKLLRKMV 213
P GG+R K + EGG G R +KIN+L+ +M+
Sbjct: 121 PPRGGFRGSKKRSFKEGGALGYRGEKINELIERML 155
>pdb|3CI1|A Chain A, Structure Of The Pduo-Type Atp:co(I)rrinoid
Adenosyltransferase From Lactobacillus Reuteri Complexed
With Four-Coordinate Cob(Ii)alamin And Atp
pdb|3CI3|A Chain A, Structure Of The Pduo-Type Atp:co(I)rrinoid
Adenosyltransferase From Lactobacillus Reuteri Complexed
With Partial Adenosylcobalamin And Pppi
pdb|3CI4|A Chain A, Structure Of The Pduo-Type Atp:co(I)rrinoid
Adenosyltransferase From Lactobacillus Reuteri Complexed
With Four-Coordinate Cob(Ii)inamide And Atp
Length = 194
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 95 YYIPGEAKLAFVIRI-RGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVS 143
+ +PG +LA + + R I R A R+ +QL+R QIN + + +N++S
Sbjct: 118 FILPGGTQLASALHVARTITRRAE--RQIVQLMREEQINQDVLIFINRLS 165
>pdb|2NT8|A Chain A, Atp Bound At The Active Site Of A Pduo Type
Atp:co(i)rrinoid Adenosyltransferase From Lactobacillus
Reuteri
Length = 223
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 95 YYIPGEAKLAFVIRI-RGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVS 143
+ +PG +LA + + R I R A R+ +QL+R QIN + + +N++S
Sbjct: 147 FILPGGTQLASALHVARTITRRAE--RQIVQLMREEQINQDVLIFINRLS 194
>pdb|2R6X|A Chain A, Structure Of A D35n Variant Pduo-type Atp:co(i)rrinoid
Adenosyltransferase From Lactobacillus Reuteri Complexed
With Atp
pdb|2R6X|B Chain B, Structure Of A D35n Variant Pduo-type Atp:co(i)rrinoid
Adenosyltransferase From Lactobacillus Reuteri Complexed
With Atp
Length = 194
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 95 YYIPGEAKLAFVIRI-RGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVS 143
+ +PG +LA + + R I R A R+ +QL+R QIN + + +N++S
Sbjct: 118 FILPGGTQLASALHVARTITRRAE--RQIVQLMREEQINQDVLIFINRLS 165
>pdb|3GAJ|A Chain A, Structure Of A C-Terminal Deletion Variant Of A Pduo-Type
Atp:corrinoid Adenosyltransferase From Lactobacillus
Reuteri Complexed With Cobalamin And Atp
Length = 187
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 95 YYIPGEAKLAFVIRI-RGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVS 143
+ +PG +LA + + R I R A R+ +QL+R QIN + + +N++S
Sbjct: 118 FILPGGTQLASALHVARTITRRAE--RQIVQLMREEQINQDVLIFINRLS 165
>pdb|3GAH|A Chain A, Structure Of A F112h Variant Pduo-Type Atp:corrinoid
Adenosyltransferase From Lactobacillus Reuteri Complexed
With Cobalamin And Atp
Length = 194
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 97 IPGEAKLAFVIRI-RGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVS 143
+PG +LA + + R I R A R+ +QL+R QIN + + +N++S
Sbjct: 120 LPGGTQLASALHVARTITRRAE--RQIVQLMREEQINQDVLIFINRLS 165
>pdb|3GAI|A Chain A, Structure Of A F112a Variant Pduo-Type Atp:corrinoid
Adenosyltransferase From Lactobacillus Reuteri Complexed
With Cobalamin And Atp
Length = 194
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 97 IPGEAKLAFVIRI-RGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVS 143
+PG +LA + + R I R A R+ +QL+R QIN + + +N++S
Sbjct: 120 LPGGTQLASALHVARTITRRAE--RQIVQLMREEQINQDVLIFINRLS 165
>pdb|1NR3|A Chain A, Solution Structure Of The Protein Mth0916: The Northeast
Structural Genomics Consortium Target Tt212
Length = 122
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 76 RAKERDEI--RLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKT 122
R DEI RL+ E+ K G + I LAF+IR + +R+ +V K+
Sbjct: 56 RGDTLDEIIKRLLEESNKEGIHVIHDSITLAFLIREKASHRIVHRVVKS 104
>pdb|2R6T|A Chain A, Structure Of A R132k Variant Pduo-Type Atp:co(I)rrinoid
Adenosyltransferase From Lactobacillus Reuteri Complexed
With Atp
pdb|2R6T|B Chain B, Structure Of A R132k Variant Pduo-Type Atp:co(I)rrinoid
Adenosyltransferase From Lactobacillus Reuteri Complexed
With Atp
Length = 194
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 95 YYIPGEAKLAFVIRI-RGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVS 143
+ +PG +LA + + R I + A R+ +QL+R QIN + + +N++S
Sbjct: 118 FILPGGTQLASALHVARTITKRAE--RQIVQLMREEQINQDVLIFINRLS 165
>pdb|3HMK|A Chain A, Crystal Structure Of Serine Racemase
pdb|3HMK|B Chain B, Crystal Structure Of Serine Racemase
pdb|3L6C|A Chain A, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
pdb|3L6C|B Chain B, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
Length = 339
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 141 KVSVGKQNIICVEDLIHEVFTVG-DNFKYASNALW 174
K S+G + DL+ +VFTV D KYA+ +W
Sbjct: 241 KSSIGLNTWPIIRDLVDDVFTVTEDEIKYATQLVW 275
>pdb|3GG6|A Chain A, Crystal Structure Of The Nudix Domain Of Human Nudt18
Length = 156
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 19/24 (79%), Gaps = 2/24 (8%)
Query: 78 KERDEIRLMREAKK--RGNYYIPG 99
E+DE+ L++EAK+ RG++Y+P
Sbjct: 29 SEQDEVLLIQEAKRECRGSWYLPA 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,280,591
Number of Sequences: 62578
Number of extensions: 202922
Number of successful extensions: 559
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 539
Number of HSP's gapped (non-prelim): 28
length of query: 213
length of database: 14,973,337
effective HSP length: 95
effective length of query: 118
effective length of database: 9,028,427
effective search space: 1065354386
effective search space used: 1065354386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)