Query psy1312
Match_columns 213
No_of_seqs 144 out of 593
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 20:07:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1312.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1312hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_V RPL7, 60S ribosomal pro 100.0 2.1E-66 7.3E-71 450.9 19.3 187 27-213 4-239 (239)
2 3iz5_e 60S ribosomal protein L 100.0 3.2E-66 1.1E-70 451.0 11.0 188 26-213 8-244 (244)
3 3izc_e 60S ribosomal protein R 100.0 9.7E-66 3.3E-70 448.0 13.6 189 25-213 5-244 (244)
4 2zkr_w 60S ribosomal protein L 100.0 2.2E-65 7.4E-70 450.8 2.8 192 22-213 30-270 (270)
5 1vq8_W 50S ribosomal protein L 100.0 2.2E-42 7.6E-47 283.0 9.5 110 103-213 1-154 (154)
6 3jyw_F 60S ribosomal protein L 100.0 2.1E-42 7.3E-47 296.0 6.6 119 95-213 44-213 (213)
7 3j21_Y 50S ribosomal protein L 100.0 6.9E-42 2.3E-46 280.4 8.5 109 104-213 4-155 (155)
8 1bxy_A Protein (ribosomal prot 98.2 1.2E-06 4.1E-11 60.9 3.6 42 104-145 4-45 (60)
9 3r8s_Z 50S ribosomal protein L 98.1 2E-06 6.9E-11 59.3 3.5 43 103-145 3-45 (58)
10 2zjr_W 50S ribosomal protein L 98.1 1.6E-06 5.6E-11 59.2 2.5 41 105-145 2-42 (55)
11 3q2b_A Pfadf1, cofilin/actin-d 47.1 11 0.00039 28.3 2.6 50 114-163 8-60 (124)
12 2l72_A Tgadf, actin depolymeri 45.0 13 0.00045 28.7 2.7 50 114-166 27-81 (139)
13 2w0i_A Twinfilin-2; cytoskelet 43.7 9.3 0.00032 29.0 1.6 53 113-166 2-58 (135)
14 2kd5_A ADF H, actin severing a 38.5 19 0.00066 27.5 2.7 52 114-166 7-64 (144)
15 2kvk_A Actin severing and dyna 33.9 28 0.00094 26.6 3.0 53 111-166 5-64 (144)
16 1vkk_A GMF-gamma, GLIA maturat 33.2 22 0.00076 27.7 2.3 54 113-166 20-80 (154)
17 1ip9_A BEM1 protein; ubiquitin 30.8 1.1E+02 0.0039 22.0 5.6 54 104-161 23-76 (85)
18 1cnu_A Actophorin, ADF, cofili 30.1 20 0.0007 26.8 1.6 53 114-166 4-62 (137)
19 3lvh_D LCB, clathrin light cha 28.8 96 0.0033 25.9 5.5 15 24-38 94-108 (205)
20 2i2q_A Cofilin; N-terminal ser 28.4 29 0.00099 26.0 2.2 54 111-166 5-64 (137)
21 3lvg_D LCB, clathrin light cha 28.1 1.2E+02 0.0039 24.9 5.7 15 24-38 79-93 (190)
22 1cfy_A Cofilin; actin-binding, 28.0 21 0.00071 27.0 1.3 52 114-165 7-63 (143)
23 2doa_A RNA polymerase II elong 25.2 24 0.00082 26.5 1.1 17 148-164 44-60 (104)
24 4hyl_A Stage II sporulation pr 24.0 1.3E+02 0.0046 20.9 5.1 20 114-133 81-100 (117)
25 1h4x_A SPOIIAA, anti-sigma F f 22.8 1.3E+02 0.0045 20.8 4.8 19 114-132 81-99 (117)
26 3daw_B Twinfilin-1, protein A6 20.8 34 0.0012 27.0 1.3 55 111-166 19-78 (164)
27 2vac_A Twinfilin-2; transferas 20.5 41 0.0014 25.2 1.6 46 114-160 5-58 (134)
28 1v6f_A MGMF-beta, GLIA maturat 20.0 43 0.0015 25.7 1.7 53 114-166 15-74 (151)
No 1
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_V 4a1c_V 4a1e_V
Probab=100.00 E-value=2.1e-66 Score=450.85 Aligned_cols=187 Identities=48% Similarity=0.829 Sum_probs=182.5
Q ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCeeEEE
Q psy1312 27 VVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLMREAKKRGNYYIPGEAKLAFV 106 (213)
Q Consensus 27 ~vpE~lLKKrK~~~~~~~~~~~~~~~~k~~~k~~rk~~fkrae~yvkey~~~erd~~r~kR~akk~~~~yvp~e~kl~fV 106 (213)
+|||++|||||+++++++++++++.+.+..++++++.+|+|||+|++||+++++|.+|++|+|+++|+||+|+||+|+||
T Consensus 4 ~vpe~~lKkrk~~~~~~~~~~~~~~~~k~~~~~~r~~~~~rae~y~~ey~~~~r~~ir~~r~a~~~~~~~~~~e~kl~fV 83 (239)
T 4a17_V 4 FVPENVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKARKTGAFYVPAEAKVAFA 83 (239)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCCCCEEEE
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceEEEE
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHhcCcccccceEEEecCcccc------------------------------------------
Q psy1312 107 IRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV------------------------------------------ 144 (213)
Q Consensus 107 IRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~------------------------------------------ 144 (213)
|||||++++||++++||++|||+++|+|||+++|+++.
T Consensus 84 irIRg~ig~~~~~rktL~~LgL~ki~~~Vfvk~npa~~gMLr~V~pyV~~G~pnlksv~eLi~KRG~~k~~~~~i~Ltdn 163 (239)
T 4a17_V 84 IRIRGVNQLHPDVKRVLRLFRLRQLHNGAFFRVNKASLNMIKRVLPFITFGYPTRNTISKLIYKRGFAKVNGQRIPLTDN 163 (239)
T ss_dssp EECSCSSSCCHHHHHHHHHTTCCBTTEEEEEECCHHHHHTTGGGGGGEEEECCCHHHHHHHHHHSCEEEETTEEEECCCS
T ss_pred EEecccCCCCHHHHHHHHHcCCCccCCeEEEeCCHHHHHHHHHhhhceeeecCCHHHHHHHHHhhCccccCCceecCChh
Confidence 99999999999999999999999999999999999988
Q ss_pred -------cccccccHHHHHHHHHhcCcchhhhhcCCCCeecCCCCCcccccccccccCCCCCCChHHHHHHHHhhC
Q psy1312 145 -------GKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNREDKINKLLRKMV 213 (213)
Q Consensus 145 -------G~~giiciEDliheI~~~g~~fk~v~~fl~pF~L~~P~~G~~~~~~~~~~GG~~G~r~~~IN~LI~rM~ 213 (213)
|+|||+|+||||||||++|++|+++++|||||+||||+|||++++.||.+||++||||+.||+||++|+
T Consensus 164 ~~ie~~lGk~giiciEDLiheI~t~g~~fk~~~~fl~pFkL~~PrgG~k~~~~~f~egG~~G~r~~~IN~Li~rM~ 239 (239)
T 4a17_V 164 TIVEKSLGKFGITCVEDLIHEITTVGPHFKEANNFLWPFKLDTPRGGFRNKRHAYHQGGDWGNREVYINDLVKAML 239 (239)
T ss_dssp HHHHHHHGGGTCCSHHHHHHHHHHTCSCCHHHHHHBCCEECCCCSSCCSCTTSBGGGTCCBEECTTTHHHHHHHHC
T ss_pred HHHHHhCCcCCcccHHHHHHHHHhCCcCHHHhhccCCCeECCCCccccccCCcccccCCCccccHHHHHHHHHHhC
Confidence 789999999999999999999999999999999999999999888999999999999999999999997
No 2
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_e
Probab=100.00 E-value=3.2e-66 Score=451.03 Aligned_cols=188 Identities=51% Similarity=0.863 Sum_probs=184.1
Q ss_pred CCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCeeEE
Q psy1312 26 PVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLMREAKKRGNYYIPGEAKLAF 105 (213)
Q Consensus 26 ~~vpE~lLKKrK~~~~~~~~~~~~~~~~k~~~k~~rk~~fkrae~yvkey~~~erd~~r~kR~akk~~~~yvp~e~kl~f 105 (213)
|+|||++|||||+++++++++++++.+.+..++++++.+|+|||+|+++|+++++|.+|++|+++++|+||+|+||+|+|
T Consensus 8 ~~vpE~llkkrk~~~~~~~~~~~~~~~~k~~~k~~r~~~~~rae~~~~ey~~~~r~~ir~~r~a~~~~~~~~p~e~kl~f 87 (244)
T 3iz5_e 8 VAVPEKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMKGGFYVSPEAKPLF 87 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHSCSCCCSCCCCCCCCEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCceEE
Confidence 57999999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHhcCcccccceEEEecCcccc-----------------------------------------
Q psy1312 106 VIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV----------------------------------------- 144 (213)
Q Consensus 106 VIRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~----------------------------------------- 144 (213)
||||||++++||++++||++|||+++|+|||+++|+++.
T Consensus 88 VirIRg~ig~~~~~rktL~~LgL~ki~~~Vfv~~npa~~gML~~V~pyV~~G~pnlksv~eLi~KRG~~k~~~~~i~ltd 167 (244)
T 3iz5_e 88 VVRIRGINAMHPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIPLAN 167 (244)
T ss_dssp EECCSCSTTSCHHHHHHHHHTCCCSTTEEEEECSCHHHHHHHTTTGGGCEEECCCHHHHHHHHHHHCCCCTTSCCCCSST
T ss_pred EEEecCcCCCCHHHHHHHHHcCCCccCCEEEEeCCHHHHHHHHHhhcceeeecCCHHHHHHHHHhhCeeccCCceecCCh
Confidence 999999999999999999999999999999999999988
Q ss_pred --------cccccccHHHHHHHHHhcCcchhhhhcCCCCeecCCCCCcccccccccccCCCCCCChHHHHHHHHhhC
Q psy1312 145 --------GKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNREDKINKLLRKMV 213 (213)
Q Consensus 145 --------G~~giiciEDliheI~~~g~~fk~v~~fl~pF~L~~P~~G~~~~~~~~~~GG~~G~r~~~IN~LI~rM~ 213 (213)
|+|||+|+||||||||++|++|+++++|||||+||||+|||++++.||.+||++||||+.||+||++||
T Consensus 168 n~~iee~lgk~giiciEDLiheI~~~g~~fk~~~~fl~PFkL~~Pr~G~k~~~~~~~egG~~G~r~~~IN~Li~rM~ 244 (244)
T 3iz5_e 168 NKVIEEGLGKHNIICIEDLVHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINQLVRRMN 244 (244)
T ss_dssp HHHHTCSCCSSSCCCHHHHHHHHHHTCTTCSSSCCCSSCEECCCCTTCCSCTTSBTTTTCSBEECHHHHHHHHTTCC
T ss_pred HHHHHHhccccCcccHHHHHHHHHhCccCHHHhhcccCCeeCCCCccccccCccccccCCCccccHHHHHHHHHHhC
Confidence 789999999999999999999999999999999999999999888999999999999999999999997
No 3
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e 3o58_G 3o5h_G 3u5e_F 3u5i_F 4b6a_F
Probab=100.00 E-value=9.7e-66 Score=448.02 Aligned_cols=189 Identities=47% Similarity=0.819 Sum_probs=183.4
Q ss_pred CCCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCeeE
Q psy1312 25 LPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLMREAKKRGNYYIPGEAKLA 104 (213)
Q Consensus 25 l~~vpE~lLKKrK~~~~~~~~~~~~~~~~k~~~k~~rk~~fkrae~yvkey~~~erd~~r~kR~akk~~~~yvp~e~kl~ 104 (213)
..+|||++|||||+++++++++++++.+.+..++++++.+|+|||+|+++|+++++|.+|++|+++++|+||+|+||+|+
T Consensus 5 ~~~vpE~llkkrk~~~~~~~~~~~~~~~~k~~~k~~r~~~~~rae~~~~ey~~~~r~~ir~~r~a~~~~~~~~p~e~kl~ 84 (244)
T 3izc_e 5 KILTPESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAGSYYVEAQHKLV 84 (244)
T ss_dssp -CHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHSSCCCCSCCCCCCCCE
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCceE
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCcccccceEEEecCcccc----------------------------------------
Q psy1312 105 FVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV---------------------------------------- 144 (213)
Q Consensus 105 fVIRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~---------------------------------------- 144 (213)
|||||||++++||++++||++|||+++|+|||+++|+++.
T Consensus 85 fVirIRs~ig~~~~~rktL~~LgL~ki~~~Vfv~~npa~~gMLr~V~pyVt~G~pnlksv~eLi~KRG~~k~~~~~i~lt 164 (244)
T 3izc_e 85 FVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLS 164 (244)
T ss_dssp EEECCSCSSSCCHHHHHHHHHHTCCSTTEEEEECSCHHHHHHHHHHTTSCEEECCCHHHHHHHHHHHCCCCSSSCCCCSC
T ss_pred EEEEecCcCCCCHHHHHHHHHcCCCccCCeEEEeCCHHHHHHHHHHhhHhhcccCCHHHHHHHHHhhCccccCCceecCC
Confidence 9999999999999999999999999999999999999988
Q ss_pred ---------cccccccHHHHHHHHHhcCcchhhhhcCCCCeecCCCCCccc--ccccccccCCCCCCChHHHHHHHHhhC
Q psy1312 145 ---------GKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWR--KKTIHYVEGGDFGNREDKINKLLRKMV 213 (213)
Q Consensus 145 ---------G~~giiciEDliheI~~~g~~fk~v~~fl~pF~L~~P~~G~~--~~~~~~~~GG~~G~r~~~IN~LI~rM~ 213 (213)
|++||+|+||||||||++|++|+++++|||||+||||+|||+ +++.||.+||++||||+.||+||++||
T Consensus 165 dn~~iee~lgk~giiciEDLiheI~~~g~~fk~~~~fl~pFkL~~PrgG~~~~~~~~~~~egG~~G~r~~~IN~Li~rM~ 244 (244)
T 3izc_e 165 DNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKLVKSMN 244 (244)
T ss_dssp HHHHHTCCCCSSSCCSHHHHHHHHHHTCTTSTTTSSCSSCEECCCCGGGSSCSCTTCBTTTTSSBEECHHHHHHHHHHCC
T ss_pred chHHHHHhccccCceeHHHHHHHHHhCCcCHHHhhccCCCeECCCCccccccCCcccccccCCCccccHHHHHHHHHHhC
Confidence 789999999999999999999999999999999999999998 677999999999999999999999997
No 4
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=2.2e-65 Score=450.82 Aligned_cols=192 Identities=59% Similarity=0.963 Sum_probs=107.1
Q ss_pred CCCCCCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCC
Q psy1312 22 KKGLPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLMREAKKRGNYYIPGEA 101 (213)
Q Consensus 22 ~~~l~~vpE~lLKKrK~~~~~~~~~~~~~~~~k~~~k~~rk~~fkrae~yvkey~~~erd~~r~kR~akk~~~~yvp~e~ 101 (213)
.+++|+|||++|||||+++++++++++++.+.+..++++++.+|+|||+|+++|+++++|.+|++|+|+++|+||+|+||
T Consensus 30 ~~~~~~vpE~llKkrk~~~~~~~~~~~~~~~~k~~~~~~r~~~~~rae~y~~eyr~~~r~~ir~~r~akk~g~~yvp~e~ 109 (270)
T 2zkr_w 30 KKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEP 109 (270)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEecCCCCCCHHHHHHHHhcCcccccceEEEecCcccc-------------------------------------
Q psy1312 102 KLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV------------------------------------- 144 (213)
Q Consensus 102 kl~fVIRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~------------------------------------- 144 (213)
+|+||+||||++|++|++++||++|||+++|++||+++|+++.
T Consensus 110 kl~~V~rirs~ig~~~~~rktL~~LgLrki~~~V~v~dtpa~rgML~kV~~~V~vgepnlksv~eLi~KRG~~ki~~k~i 189 (270)
T 2zkr_w 110 KLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRI 189 (270)
T ss_dssp -CEEEECCSCSSSSCTTSSSHHHHTCCCSSSEEEEECCCHHHHHTTTSSTTSCBCCCCCTTTHHHHHHHCCCCSSSSSCS
T ss_pred ceeEEEEeCCcCCCCHHHHHHHHHcCCCcCCCeEEEeCCHHHHHHHHhcccceeEecCCHHHHHHHHHhhcccccCCeee
Confidence 9999999999999999999999999999999999999999987
Q ss_pred ------------cccccccHHHHHHHHHhcCcchhhhhcCCCCeecCCCCCcccccccccccCCCCCCChHHHHHHHHhh
Q psy1312 145 ------------GKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNREDKINKLLRKM 212 (213)
Q Consensus 145 ------------G~~giiciEDliheI~~~g~~fk~v~~fl~pF~L~~P~~G~~~~~~~~~~GG~~G~r~~~IN~LI~rM 212 (213)
|++||+|+||||||||++|+||+++++|||||+||||+|||++++.||++||++||||++||+||++|
T Consensus 190 ~LtdN~iIee~LG~~giiciEDliheI~t~g~~fk~~~~fl~pFkL~~P~~G~k~k~~~~~egG~~G~r~~~IN~Li~rM 269 (270)
T 2zkr_w 190 ALTDNSLIARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRM 269 (270)
T ss_dssp CSSHHHHSSSSSCSSCCCSHHHHHHHTSSCSSCCSSSSSCCSCEECCCCSSCCSCSSCC-CCSCSCC-CCTTTTTTTTTC
T ss_pred eCCchHHHHhhccCcCcchHHHHHHHHHhccccHHHHhCcCCCeeCCCccccccccccccccCCcccccHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred C
Q psy1312 213 V 213 (213)
Q Consensus 213 ~ 213 (213)
|
T Consensus 270 ~ 270 (270)
T 2zkr_w 270 N 270 (270)
T ss_dssp C
T ss_pred C
Confidence 7
No 5
>1vq8_W 50S ribosomal protein L30P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.59.1.1 PDB: 1jj2_V 1k73_X* 1k8a_X* 1k9m_X* 1kc8_X* 1kd1_X* 1kqs_V* 1m1k_X* 1m90_X* 1n8r_X* 1nji_X* 1q7y_X* 1q81_X* 1q82_X* 1q86_X* 1qvf_V 1qvg_V 1s72_W* 1vq4_W* 1vq5_W* ...
Probab=100.00 E-value=2.2e-42 Score=283.03 Aligned_cols=110 Identities=18% Similarity=0.344 Sum_probs=106.6
Q ss_pred eEEEEEecCCCCCCHHHHHHHHhcCcccccceEEEecCcccc--------------------------------------
Q psy1312 103 LAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV-------------------------------------- 144 (213)
Q Consensus 103 l~fVIRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~-------------------------------------- 144 (213)
|+||+||||.++++|++++||++|||+++|++||+++|+++.
T Consensus 1 l~fV~rirs~ig~~~~~r~tL~~LgL~ki~~~v~~~~tp~~~gMl~kV~~~V~vge~~l~sv~~Li~KRG~~~~~~~~lt 80 (154)
T 1vq8_W 1 MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVD 80 (154)
T ss_dssp CEEEEECSCSTTSCHHHHHHHHHTTCCSTTEEEEECCCHHHHHHHHHSGGGEEEECCCHHHHHHHHHHHCCBSSSCCCCS
T ss_pred CEEEEEeCCcCCCCHHHHHHHHHcCCCcCCCEEEEeCCHHHHHHHHhhCceEEEecCchhhHHHHHHhhCccccCCccCC
Confidence 689999999999999999999999999999999999999988
Q ss_pred -----cccccccHHHHHHHHHhcCcchhhhhcCCCCeecCCCCCcccccccccccCCCCCCCh-HHHHHHHHhhC
Q psy1312 145 -----GKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNRE-DKINKLLRKMV 213 (213)
Q Consensus 145 -----G~~giiciEDliheI~~~g~~fk~v~~fl~pF~L~~P~~G~~~~~~~~~~GG~~G~r~-~~IN~LI~rM~ 213 (213)
.++||+|+||||||||++|++|+++ +|||||+||||++||+++++||.+||++|||| ++||+||++|+
T Consensus 81 dn~iie~~gi~ciedlihei~~~g~~f~~~-~fl~pF~L~~P~~G~~~~~~~~~egG~~G~r~~~~In~Li~rM~ 154 (154)
T 1vq8_W 81 DEWVAEHTDYDDISGLAFALLSEETTLREQ-GLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR 154 (154)
T ss_dssp HHHHHHHSSSSSHHHHHHHHHTTSCCTGGG-TBCSCEECCCCTTCCSCSSSBGGGTCSBEECCHHHHHHHHHHTC
T ss_pred chhhccccccccHHHHHHHHHhCCcchhhc-CCcCceecCCccccccccccccccCCccccccHHHHHHHHHHhC
Confidence 1589999999999999999999999 99999999999999998889999999999999 99999999997
No 6
>3jyw_F 60S ribosomal protein L7(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_F
Probab=100.00 E-value=2.1e-42 Score=295.97 Aligned_cols=119 Identities=55% Similarity=0.999 Sum_probs=115.0
Q ss_pred cccCCCCeeEEEEEecCCCCCCHHHHHHHHhcCcccccceEEEecCcccc------------------------------
Q psy1312 95 YYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV------------------------------ 144 (213)
Q Consensus 95 ~yvp~e~kl~fVIRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~------------------------------ 144 (213)
..+|.+++++||||++|++++++.++++|++|||+++|+||||++|+++.
T Consensus 44 ~Svp~e~kL~fVIRIrGin~ispk~rkvLqLLRL~rInsgvfvk~~k~t~~mL~~VepyV~~G~p~l~tv~eLi~KRg~~ 123 (213)
T 3jyw_F 44 AAAAAAAGLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFG 123 (213)
T ss_dssp HTCSCCCCCCCCCCCSCSSCCCHHHHHHHGGGCCCSSSCBCCCCCSSTTTTHHHHTTTTSCEECCCSSTTTSHHHHSCCC
T ss_pred hhCcccCccceeeeecCccCCCCchHHHHHHcccceecceEEecCCHHHHHHHhhccchheeecCCHHHHHHHHHhcCcc
Confidence 46899999999999999999999999999999999999999999999988
Q ss_pred -------------------cccccccHHHHHHHHHhcCcchhhhhcCCCCeecCCCCCccc--ccccccccCCCCCCChH
Q psy1312 145 -------------------GKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWR--KKTIHYVEGGDFGNRED 203 (213)
Q Consensus 145 -------------------G~~giiciEDliheI~~~g~~fk~v~~fl~pF~L~~P~~G~~--~~~~~~~~GG~~G~r~~ 203 (213)
|++||+|+|||||||+++|++|+++++|||||+||||++||+ ++++||.+||++||||+
T Consensus 124 k~~~~~i~ltdn~iie~~lg~~gi~ciedli~ei~~~g~~f~~~~~fl~pF~L~~P~~G~~~~~~~~~~~egG~~G~r~~ 203 (213)
T 3jyw_F 124 KINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREE 203 (213)
T ss_dssp SSSCCSSCSSSHHHHSSSSCCSCCCCHHHHHHHHTTTCSSCTTTTTSCSSBCCCCCTTCCSSSSSSCCTTTSCSSSEESS
T ss_pred cCCCCeecCCcchHHHHhccCCCceeHHHHHHHHHhCCcCHHHhhCCCCCEECCCCCCCccCCCeecccccCCCCCCcHH
Confidence 689999999999999999999999999999999999999999 67799999999999999
Q ss_pred HHHHHHHhhC
Q psy1312 204 KINKLLRKMV 213 (213)
Q Consensus 204 ~IN~LI~rM~ 213 (213)
.||+||++||
T Consensus 204 ~In~Li~~m~ 213 (213)
T 3jyw_F 204 FINKLVKSMN 213 (213)
T ss_dssp THHHHHTTCC
T ss_pred HHHHHHHHhC
Confidence 9999999997
No 7
>3j21_Y 50S ribosomal protein L30P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=6.9e-42 Score=280.39 Aligned_cols=109 Identities=36% Similarity=0.560 Sum_probs=105.2
Q ss_pred EEEEEecCCCCCCHHHHHHHHhcCcccccceEEEecCcccc---------------------------c-----------
Q psy1312 104 AFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV---------------------------G----------- 145 (213)
Q Consensus 104 ~fVIRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~---------------------------G----------- 145 (213)
++|+||||.++++|++++||++|||+++|++||+++|+++. |
T Consensus 4 ~~V~~irs~ig~~~~~r~tL~~LgL~ki~~~v~~~~tp~~~gMl~kV~~lV~vgep~~ksv~eLi~KRG~~~~~~~ltdn 83 (155)
T 3j21_Y 4 LAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINAETLAKLIRKRGRLIGNKPVTDE 83 (155)
T ss_dssp EEEEECSCSTTCCHHHHHHHHHTTCCSTTEEEEEECCHHHHHHHHHHTTTEEEEECCHHHHHHHHHHHCCSSSSCCCCHH
T ss_pred EEEEEeCCCCCCCHHHHHHHHHcCCCcCCCEEEEcCCHHHHHHHHhhhcceEEEcCCHHHHHHHHHHhccccCCCcCCHH
Confidence 89999999999999999999999999999999999999988 2
Q ss_pred ----ccccccHHHHHHHHHhcCcchhhhhcCCCCeecCCCCCcccc-cccccccCCCCCCChHHHHHHHHhhC
Q psy1312 146 ----KQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRK-KTIHYVEGGDFGNREDKINKLLRKMV 213 (213)
Q Consensus 146 ----~~giiciEDliheI~~~g~~fk~v~~fl~pF~L~~P~~G~~~-~~~~~~~GG~~G~r~~~IN~LI~rM~ 213 (213)
++|| |+||||||||++|++|+++++|||||+||||++||++ ++.||.+||++||||+.||+||++|+
T Consensus 84 ~l~ek~gi-ciEdli~eI~~~g~~fk~~~~fl~pFkL~~P~~G~k~~~~~~~~egG~~G~r~~~In~Li~rM~ 155 (155)
T 3j21_Y 84 YVKEKLGM-TIEEFAQKVVNGEMSLKDLPNLKPVFRLHPPRGGFRGSKKRSFKEGGALGYRGEKINELIERML 155 (155)
T ss_dssp HHHHHSSS-CHHHHHHHHHHTSSCTTTSCSSCSEEECCCCTTCSSSCSSSBTTTTSSBEECCTTHHHHHHHTC
T ss_pred HHHHHhCC-CHHHHHHHHHhCCcCHHHhhCcCCceecCCccchhhcccccccccCCCCcCcHHHHHHHHHHcC
Confidence 4899 9999999999999999999999999999999999994 77999999999999999999999996
No 8
>1bxy_A Protein (ribosomal protein L30); X-RAY crystallography, conformational changes, ribosome; 1.90A {Thermus thermophilus} SCOP: d.59.1.1 PDB: 1giy_X 1ml5_x* 1vsa_X 1vsp_X 1yl3_X 2b66_3 2b9n_3 2b9p_3 2hgj_2 2hgq_2 2hgu_2 2j01_3 2j03_3 2jl6_3 2jl8_3 2v47_3 2v49_3 2wdi_3 2wdj_3 2wdl_3 ...
Probab=98.17 E-value=1.2e-06 Score=60.88 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=40.5
Q ss_pred EEEEEecCCCCCCHHHHHHHHhcCcccccceEEEecCccccc
Q psy1312 104 AFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVG 145 (213)
Q Consensus 104 ~fVIRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~G 145 (213)
+.|.++||..|.+++.++||+.|||+++|++|+++.||++.|
T Consensus 4 ~kItlvrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irG 45 (60)
T 1bxy_A 4 LKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRG 45 (60)
T ss_dssp EEEEECSCCTTCCHHHHHHHHHHTCCSTTCEEEEECCHHHHH
T ss_pred EEEEEeecCCCCCHHHHHHHHHhCCCCCCCEEEecCCHHHHh
Confidence 779999999999999999999999999999999999999886
No 9
>3r8s_Z 50S ribosomal protein L30; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_X 1p86_X 2awb_Y 2aw4_Y 2i2v_Z 2j28_Y 2i2t_Z* 2qao_Y* 2qba_Y* 2qbc_Y* 2qbe_Y 2qbg_Y 2qbi_Y* 2qbk_Y* 2qov_Y 2qox_Y 2qoz_Y* 2qp1_Y* 2rdo_Y 2vhm_Y ...
Probab=98.10 E-value=2e-06 Score=59.33 Aligned_cols=43 Identities=23% Similarity=0.165 Sum_probs=40.8
Q ss_pred eEEEEEecCCCCCCHHHHHHHHhcCcccccceEEEecCccccc
Q psy1312 103 LAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVG 145 (213)
Q Consensus 103 l~fVIRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~G 145 (213)
-+-|.++||..|.+++.++||+.|||+++|++|++++||++.|
T Consensus 3 ~lkItlvrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irG 45 (58)
T 3r8s_Z 3 TIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRG 45 (58)
T ss_dssp EEEEEECSCSTTCCHHHHHHHHHHTCCSTTCCCEEECCHHHHH
T ss_pred eEEEEEeecCCCCCHHHHHHHHHcCCCCCCCEEEecCCHHHHH
Confidence 4678999999999999999999999999999999999999886
No 10
>2zjr_W 50S ribosomal protein L30; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.59.1.1 PDB: 1nwx_X* 1nwy_X* 1pnu_X 1pny_X 1sm1_X* 1vor_Z 1vou_Z 1vow_Z 1voy_Z 1vp0_Z 1xbp_X* 2zjp_W* 2zjq_W 1nkw_X 3cf5_W* 3dll_W* 3pio_W* 3pip_W*
Probab=98.06 E-value=1.6e-06 Score=59.18 Aligned_cols=41 Identities=24% Similarity=0.186 Sum_probs=39.0
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCcccccceEEEecCccccc
Q psy1312 105 FVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVG 145 (213)
Q Consensus 105 fVIRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~G 145 (213)
-|.++||..|.+++.++||+.|||+++|++|++++|+++.|
T Consensus 2 kIt~vrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irG 42 (55)
T 2zjr_W 2 KIKLVRSVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRG 42 (55)
T ss_dssp EEEBCSCSTTSCHHHHHHHHHTTCCSTTCEEECCCSHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHhCCCCCCCEEEecCCHHHHH
Confidence 47899999999999999999999999999999999999886
No 11
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin regulator, actin-binding protein; HET: TAR; 1.60A {Plasmodium falciparum} PDB: 2xf1_A
Probab=47.11 E-value=11 Score=28.35 Aligned_cols=50 Identities=10% Similarity=0.217 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHhcCcccccceEEEecCcccc--cccc-cccHHHHHHHHHhcC
Q psy1312 114 RVAPKVRKTLQLLRLRQINNGIFVRLNKVSV--GKQN-IICVEDLIHEVFTVG 163 (213)
Q Consensus 114 ~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~--G~~g-iiciEDliheI~~~g 163 (213)
.+++++...++.|++.+.+..+.++++...+ ...| -.+.+||+..|-..+
T Consensus 8 ~vs~e~~~~f~~lk~~k~~~~ii~kI~~~~ivv~~~~~~~~~~~f~~~Lp~~~ 60 (124)
T 3q2b_A 8 RVNDNCVTEFNNMKIRKTCGWIIFVIQNCEIIIHSKGASTTLTELVQSIDKNN 60 (124)
T ss_dssp EECHHHHHHHHHHHHHTSSEEEEEEEETTEEEEEEEEECSCHHHHHHHHHHCT
T ss_pred ccCHHHHHHHHHHhcCCCcEEEEEEEcCCEEEEeccCCCCCHHHHHHHccccC
Confidence 6899999999999998888899888887544 2222 157999999997666
No 12
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii}
Probab=45.03 E-value=13 Score=28.68 Aligned_cols=50 Identities=14% Similarity=0.246 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHhcCcccccceEEEecCcccc-----cccccccHHHHHHHHHhcCcch
Q psy1312 114 RVAPKVRKTLQLLRLRQINNGIFVRLNKVSV-----GKQNIICVEDLIHEVFTVGDNF 166 (213)
Q Consensus 114 ~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~-----G~~giiciEDliheI~~~g~~f 166 (213)
.+++++...++.|+..+.++.+.++++...+ |. + +.+||+.+|-...+.|
T Consensus 27 ~vs~e~~~af~~lk~~k~~~~ii~~I~~~eivv~~~g~-~--~~~el~~~Lp~~~prY 81 (139)
T 2l72_A 27 GVDENCVARFNELKIRKTVKWIVFKIENTKIVVEKDGK-G--NADEFRGALPANDCRF 81 (139)
T ss_dssp EECHHHHHHHHHHTTTTCCCEEEEEEETTEEEEEEEES-S--HHHHHHHHCCCCSCCE
T ss_pred CcCHHHHHHHHHHhCCCCeeEEEEEEcCCEEEEeecCC-C--CHHHHHHhCCCCCcEE
Confidence 6899999999999998867777777766222 44 4 7899988876555543
No 13
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding, cofilin-like, phosphoprotein, phosphorylation, transferase, protein tyros kinase-9; 1.8A {Homo sapiens}
Probab=43.72 E-value=9.3 Score=28.96 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHhcCcccccceEEEecCcccc----cccccccHHHHHHHHHhcCcch
Q psy1312 113 NRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV----GKQNIICVEDLIHEVFTVGDNF 166 (213)
Q Consensus 113 ~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~----G~~giiciEDliheI~~~g~~f 166 (213)
..+++++...++.|+..+ ++.+.++++..+. ...|-.+++||+.+|-...+.|
T Consensus 2 ~~v~~e~~~a~~~lk~~~-~~~ii~~id~~~~~I~v~~~~~~~~~el~~~Lp~~~~rY 58 (135)
T 2w0i_A 2 MPLQPEAQRALQQLKQKM-VNYIQMKLDLERETIELVHTEPTDVAQLPSRVPRDAARY 58 (135)
T ss_dssp CCBCHHHHHHHHHHHTTS-CSEEEEEEETTTTEEEEEECCCCCGGGGGGGSCSSSCEE
T ss_pred cccCHHHHHHHHHHHcCC-CcEEEEEEeCCCCEEEEEecCCCCHHHHHhhCCCCCcEE
Confidence 368999999999999988 8888888876432 2224557888888876555554
No 14
>2kd5_A ADF H, actin severing and dynamics regulatory protein; cofilin, solution structure, hormone; NMR {Leishmania donovani} PDB: 2kvk_A
Probab=38.51 E-value=19 Score=27.46 Aligned_cols=52 Identities=13% Similarity=0.182 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHhcCcccccceEEEecCcccc----ccccc--ccHHHHHHHHHhcCcch
Q psy1312 114 RVAPKVRKTLQLLRLRQINNGIFVRLNKVSV----GKQNI--ICVEDLIHEVFTVGDNF 166 (213)
Q Consensus 114 ~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~----G~~gi--iciEDliheI~~~g~~f 166 (213)
.+++++...++.|+..+ ++.+.+++++... ...|- .+++||+.+|-...+.|
T Consensus 7 ~vs~e~~~a~~~~~~~~-~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~~~~rY 64 (144)
T 2kd5_A 7 TLEESVRGAIDDLRMKK-SRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTEKPCY 64 (144)
T ss_dssp BCCHHHHHHHHHHTTTS-SSEEEEEECSSSCBEEEEEECCSCCCHHHHTTTTSCSSCEE
T ss_pred CcCHHHHHHHHHHHcCC-eeEEEEEECCCCCEEEEEeccCCCCCHHHHHHhCCccCcEE
Confidence 68999999999999999 7788888865322 22222 47899988886555543
No 15
>2kvk_A Actin severing and dynamics regulatory protein; ADF/cofilin, hormone; NMR {Leishmania donovani}
Probab=33.95 E-value=28 Score=26.64 Aligned_cols=53 Identities=17% Similarity=0.310 Sum_probs=38.2
Q ss_pred CCCCCCHHHHHHHHhcCcccccceEEEecCcccc-------cccccccHHHHHHHHHhcCcch
Q psy1312 111 GINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV-------GKQNIICVEDLIHEVFTVGDNF 166 (213)
Q Consensus 111 G~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~-------G~~giiciEDliheI~~~g~~f 166 (213)
|+ .+++++...++.|+..+ ++.+.++++.... |.. -...+||+.+|-...+.|
T Consensus 5 Gv-~v~de~~~af~~lk~~k-~~~vi~~I~~~~~~i~v~~~~~~-~~~~~e~~~~L~~~~prY 64 (144)
T 2kvk_A 5 GV-TLEESVRGAIDDLRMKK-SRYVMMCIGADGKKIEVTEVGER-SVNYTDLKEKFSTEKPCY 64 (144)
T ss_dssp CC-EECHHHHHHHHHHHTTS-SSEEEEEECTTSCEEEEEEEECT-TCCHHHHHHTCCTTSCCE
T ss_pred Cc-ccCHHHHHHHHHHhcCC-ceEEEEEEeCCCcEEEEEeccCC-CCCHHHHHHhCCccCceE
Confidence 53 58999999999999976 5677777765433 322 236899999886666654
No 16
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN JCSG, protein structure initiative, PSI, joint center for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2 PDB: 1wfs_A 3l50_A
Probab=33.17 E-value=22 Score=27.68 Aligned_cols=54 Identities=26% Similarity=0.370 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHhcCccc--ccceEEEecCcccc----cc-cccccHHHHHHHHHhcCcch
Q psy1312 113 NRVAPKVRKTLQLLRLRQ--INNGIFVRLNKVSV----GK-QNIICVEDLIHEVFTVGDNF 166 (213)
Q Consensus 113 ~~v~~~v~k~L~lLrL~~--in~~vfvk~n~~t~----G~-~giiciEDliheI~~~g~~f 166 (213)
..+++++...++.|++.+ .++.+.+++++.+. .. .+-.+++||+.+|-...+.|
T Consensus 20 ~~v~~e~~~a~~~lk~~k~~~~~~iifkId~~~~~I~v~~~~~~~~~~e~~~~Lp~~~pRY 80 (154)
T 1vkk_A 20 CEVDPELKETLRKFRFRKETNNAAIIMKVDKDRQMVVLEDELQNISPEELKLELPERQPRF 80 (154)
T ss_dssp CEECHHHHHHHHHHHTCCCCSCEEEEEEEETTTTEEEEEEEEESCCHHHHHHHSCSSSCEE
T ss_pred eeeCHHHHHHHHHHHhcccCCccEEEEEEcCCCCEEEEEEcCCCCCHHHHHHhCCCCCcEE
Confidence 368999999999999976 67888888876433 11 12347999999886666654
No 17
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=30.81 E-value=1.1e+02 Score=21.98 Aligned_cols=54 Identities=11% Similarity=0.017 Sum_probs=39.7
Q ss_pred EEEEEecCCCCCCHHHHHHHHhcCcccccceEEEecCcccccccccccHHHHHHHHHh
Q psy1312 104 AFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVGKQNIICVEDLIHEVFT 161 (213)
Q Consensus 104 ~fVIRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~G~~giiciEDliheI~~ 161 (213)
+||||+........--.++...|.+. +-..+..+....|. .|.+-+||-+.|..
T Consensus 23 IiAIrvP~di~~~~L~dKi~~RLk~~---~~~l~~ykde~~g~-~i~sD~dl~~aiqr 76 (85)
T 1ip9_A 23 IFALMLKGDTTYKELRSKIAPRIDTD---NFKLQTKLFDGSGE-EIKTDSQVSNIIQA 76 (85)
T ss_dssp CEEEEECSCCCHHHHHHHHHHHHTSS---CEEEEECCSSSCCS-CCCSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccc---ceEEEEecCCCCCC-cccCHHHHHHHHHh
Confidence 89999998877777777888888883 33333334444565 89999999998864
No 18
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A {Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A
Probab=30.08 E-value=20 Score=26.80 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHhcCcccccceEEEecCcc--cc--cccc--cccHHHHHHHHHhcCcch
Q psy1312 114 RVAPKVRKTLQLLRLRQINNGIFVRLNKV--SV--GKQN--IICVEDLIHEVFTVGDNF 166 (213)
Q Consensus 114 ~v~~~v~k~L~lLrL~~in~~vfvk~n~~--t~--G~~g--iiciEDliheI~~~g~~f 166 (213)
.+++++...++.|+..+.++.+.++.+.. ++ ...| -.+++||+.++-...+.|
T Consensus 4 ~v~~e~~~a~~~~~~~~~~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~~~~rY 62 (137)
T 1cnu_A 4 AVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRY 62 (137)
T ss_dssp EECHHHHHHHHHHHHHCCCSEEEEEECTTSSEEEEEEECCTTCCHHHHHTTSCTTSCEE
T ss_pred ccCHHHHHHHHHHHcCCCccEEEEEEcCCCCEEEEEeccCCCCCHHHHHHhCCCCCceE
Confidence 68999999999999987677777777652 22 2223 246899988876555543
No 19
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=28.82 E-value=96 Score=25.87 Aligned_cols=15 Identities=40% Similarity=0.463 Sum_probs=9.9
Q ss_pred CCCCCchHHHHHHHh
Q psy1312 24 GLPVVPESVLKKRKK 38 (213)
Q Consensus 24 ~l~~vpE~lLKKrK~ 38 (213)
.+...||+|.+=|..
T Consensus 94 ~leeEPEsIRkWREE 108 (205)
T 3lvh_D 94 RLTQEPESIRKWREE 108 (205)
T ss_dssp TTTBSTTHHHHHHHH
T ss_pred ccccCchHHHHHHHH
Confidence 455689999775433
No 20
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A {Schizosaccharomyces pombe}
Probab=28.45 E-value=29 Score=25.99 Aligned_cols=54 Identities=13% Similarity=0.288 Sum_probs=38.4
Q ss_pred CCCCCCHHHHHHHHhcCcccccceEEEecCcccc------cccccccHHHHHHHHHhcCcch
Q psy1312 111 GINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV------GKQNIICVEDLIHEVFTVGDNF 166 (213)
Q Consensus 111 G~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~------G~~giiciEDliheI~~~g~~f 166 (213)
|+ .+++++...++.|+..+.++.+.+++++... |..+ .+++||+.+|-...+.|
T Consensus 5 Gi-~v~~e~~~a~~~~~~~~~~~~ii~~i~~~~~~i~v~~~~~~-~~~~el~~~L~~~~~rY 64 (137)
T 2i2q_A 5 GV-KVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTD-KDFDTFLGDLPEKDCRY 64 (137)
T ss_dssp CC-EECHHHHHHHHHHHHTCCCSEEEEEECTTSSEEEEEEEECC-CCHHHHHHTSCSSSCEE
T ss_pred Cc-ccCHHHHHHHHHHHCCCCceEEEEEECCCCcEEEEecCCCC-CCHHHHHHhCCCcCceE
Confidence 44 6899999999999998767778888765322 2211 46899998876544443
No 21
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}
Probab=28.05 E-value=1.2e+02 Score=24.94 Aligned_cols=15 Identities=40% Similarity=0.463 Sum_probs=10.2
Q ss_pred CCCCCchHHHHHHHh
Q psy1312 24 GLPVVPESVLKKRKK 38 (213)
Q Consensus 24 ~l~~vpE~lLKKrK~ 38 (213)
.+...||++.+=|..
T Consensus 79 ~LeEEPEsIRKWREE 93 (190)
T 3lvg_D 79 RLTQEPESIRKWREE 93 (190)
T ss_dssp TTTTSTTHHHHHHHH
T ss_pred ccccCchHHHHHHHH
Confidence 456689999775443
No 22
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein; 2.30A {Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB: 1cof_A 1qpv_A
Probab=27.95 E-value=21 Score=27.04 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHhcCcccccceEEEecCccc--c--cccc-cccHHHHHHHHHhcCcc
Q psy1312 114 RVAPKVRKTLQLLRLRQINNGIFVRLNKVS--V--GKQN-IICVEDLIHEVFTVGDN 165 (213)
Q Consensus 114 ~v~~~v~k~L~lLrL~~in~~vfvk~n~~t--~--G~~g-iiciEDliheI~~~g~~ 165 (213)
.+++++...++.|+..+.++.+.++.++.. + ...| -..++||+.++-...+.
T Consensus 7 ~v~~e~~~a~~~~~~~~~~~~ii~~i~~~~~~i~v~~~g~~~~~~el~~~L~~~~~r 63 (143)
T 1cfy_A 7 AVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETSTDPSYDAFLEKLPENDCL 63 (143)
T ss_dssp EECHHHHHHHHHHHHHCCCSEEEEEECTTSSEEEEEEEECCCCHHHHHTTSCTTCCE
T ss_pred EeCHHHHHHHHHHHCCCCeeEEEEEEcCCCCEEEEEecCCCCCHHHHHHhCCCCCcE
Confidence 689999999999999986777777776522 2 2222 24688888877544443
No 23
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=25.19 E-value=24 Score=26.50 Aligned_cols=17 Identities=12% Similarity=0.284 Sum_probs=11.6
Q ss_pred ccccHHHHHHHHHhcCc
Q psy1312 148 NIICVEDLIHEVFTVGD 164 (213)
Q Consensus 148 giiciEDliheI~~~g~ 164 (213)
...|+..+.+++++..+
T Consensus 44 d~~~l~~iL~eVA~~~~ 60 (104)
T 2doa_A 44 DKDALDGLLQQVANMSA 60 (104)
T ss_dssp HHHHHHHHHHHSSEECS
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 35577788887776643
No 24
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=23.99 E-value=1.3e+02 Score=20.90 Aligned_cols=20 Identities=15% Similarity=0.327 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHhcCcccccc
Q psy1312 114 RVAPKVRKTLQLLRLRQINN 133 (213)
Q Consensus 114 ~v~~~v~k~L~lLrL~~in~ 133 (213)
+++|.++++|++.+|.+.+.
T Consensus 81 ~~~~~v~~~l~~~gl~~~~~ 100 (117)
T 4hyl_A 81 GVSEEIRDTMEITGFWNFFT 100 (117)
T ss_dssp CCCHHHHHHHHHHTCGGGCE
T ss_pred eCCHHHHHHHHHhCccceee
Confidence 68999999999999998875
No 25
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=22.83 E-value=1.3e+02 Score=20.84 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHhcCccccc
Q psy1312 114 RVAPKVRKTLQLLRLRQIN 132 (213)
Q Consensus 114 ~v~~~v~k~L~lLrL~~in 132 (213)
+++|.++++|++.+|.+.+
T Consensus 81 ~~~~~v~~~l~~~gl~~~~ 99 (117)
T 1h4x_A 81 NPSPTMRKVFQFSGLGPWM 99 (117)
T ss_dssp SCCHHHHHHHHHTTCGGGE
T ss_pred eCCHHHHHHHHHhCCceEE
Confidence 6899999999999998876
No 26
>3daw_B Twinfilin-1, protein A6; actin depolymerisation, actin binding proteins, cytoskeleton, structural protein/contractIle protein complex; HET: ATP; 2.55A {Mus musculus} PDB: 2hd7_A
Probab=20.82 E-value=34 Score=27.01 Aligned_cols=55 Identities=13% Similarity=0.176 Sum_probs=39.4
Q ss_pred CCC-CCCHHHHHHHHhcCcccccceEEEecCcccc----cccccccHHHHHHHHHhcCcch
Q psy1312 111 GIN-RVAPKVRKTLQLLRLRQINNGIFVRLNKVSV----GKQNIICVEDLIHEVFTVGDNF 166 (213)
Q Consensus 111 G~~-~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~----G~~giiciEDliheI~~~g~~f 166 (213)
|.. .+++++...|+.|++.+ ++.|.+++++.+. .+.+-.+++||+..|-...+.|
T Consensus 19 gv~~~v~~e~~~a~~~lk~~~-~~~iifkId~~~e~I~v~~~~~~~~~df~~~Lp~~~pRY 78 (164)
T 3daw_B 19 GVAFPISRDAFQALEKLSKKQ-LNYVQLEIDIKNETIILANTENTELRDLPKRIPKDSARY 78 (164)
T ss_dssp CCCCCBCHHHHHHHHHHHTTS-CSEEEEEEETTTTEEEEEECCCCCGGGSGGGSCSSSCEE
T ss_pred cceEEECHHHHHHHHHHHcCC-ceEEEEEEeCCCCEEEEEeCCCCCHHHHHHhCCccCceE
Confidence 543 68999999999999985 7888888876533 1113367888888876555544
No 27
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation, cofilin-like, cytoskeleton, actin-binding, protein tyrosine kinase-9; 1.70A {Homo sapiens}
Probab=20.49 E-value=41 Score=25.17 Aligned_cols=46 Identities=7% Similarity=0.019 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHhcCcccccceEEEecCcccc-----cccc--c-ccHHHHHHHHH
Q psy1312 114 RVAPKVRKTLQLLRLRQINNGIFVRLNKVSV-----GKQN--I-ICVEDLIHEVF 160 (213)
Q Consensus 114 ~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~-----G~~g--i-iciEDliheI~ 160 (213)
.+++++...++.|+..+ +..+.++.+...+ |.-+ + ...+||+.++.
T Consensus 5 ~v~~e~~~~f~~~k~~k-~r~ii~~i~~~~ivv~~~~~~~~~~~~~~~~~~~~l~ 58 (134)
T 2vac_A 5 HATEELKEFFAKARAGS-VRLIKVVIEDEQLVLGASQEPVGRWDQDYDRAVLPLL 58 (134)
T ss_dssp EECHHHHHHHHHHHHSS-CSEEEEEEETTEEEEEEEECCCSCHHHHHHHHHGGGC
T ss_pred EeCHHHHHHHHHHhcCC-eEEEEEEecCCEEEEEeecCcCcccccCHHHHHHhcC
Confidence 68999999999999998 7777777776544 2211 1 23677777663
No 28
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein, cytoskeleton, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2
Probab=20.03 E-value=43 Score=25.74 Aligned_cols=53 Identities=21% Similarity=0.315 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHhcCccc--ccceEEEecCcccc----cc-cccccHHHHHHHHHhcCcch
Q psy1312 114 RVAPKVRKTLQLLRLRQ--INNGIFVRLNKVSV----GK-QNIICVEDLIHEVFTVGDNF 166 (213)
Q Consensus 114 ~v~~~v~k~L~lLrL~~--in~~vfvk~n~~t~----G~-~giiciEDliheI~~~g~~f 166 (213)
.+++++...++.|++.+ .++.+.++++.... .. ..-..++||+.+|-...+.|
T Consensus 15 ~v~~e~~~a~~~lr~~k~~~~~~iifki~~~~~~I~v~~~~~~~~~~el~~~Lp~~~prY 74 (151)
T 1v6f_A 15 DVAEDLVEKLRKFRFRKETHNAAIIMKIDKDERLVVLDEELEGVSPDELKDELPERQPRF 74 (151)
T ss_dssp EECHHHHHHHHHHHTCCCSSCEEEEEEECSSSCEEEEEEEEESCCHHHHGGGSCSSSCEE
T ss_pred EECHHHHHHHHHHHhccCCCccEEEEEEcCCCcEEEEEecCCCCCHHHHHhhCCCCCceE
Confidence 68999999999999986 57788888876432 11 11236889888775555543
Done!