RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1312
(213 letters)
>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic. This model
describes the eukaryotic 60S (cytosolic) ribosomal
protein L7 and paralogs that may or may not also be L7.
Human, Drosophila, and Arabidopsis all have both a
typical L7 and an L7-related paralog. This family is
designated subfamily rather than equivalog to reflect
these uncharacterized paralogs. Members of this family
average ~ 250 residues in length, somewhat longer than
the archaeal L30P/L7E homolog (~ 155 residues) and much
longer than the related bacterial/organellar form (~ 60
residues).
Length = 235
Score = 192 bits (491), Expect = 4e-62
Identities = 102/235 (43%), Positives = 133/235 (56%), Gaps = 51/235 (21%)
Query: 30 ESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLMREA 89
E +LKKRK R+ + + KKK + F RAE +VK YR ER+ IRL R A
Sbjct: 1 ELLLKKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLA 60
Query: 90 KKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV----- 144
KK G +Y+P E KL FVIRI+GIN + PK RK L+LLRL+Q+NNG+FV++ K ++
Sbjct: 61 KKPGKFYVPAEHKLVFVIRIKGINGIPPKPRKVLRLLRLKQVNNGVFVKVTKATLEMLRI 120
Query: 145 --------------------------------------------GKQNIICVEDLIHEVF 160
GK IIC+EDLIHE++
Sbjct: 121 VEPYVAYGYPNLKSVRELIYKRGFAKINGQRVPLTDNTIIEQHLGKYGIICIEDLIHEIY 180
Query: 161 TVGDNFKYASNALWPFKLNNPTGGW--RKKTIHYVEGGDFGNREDKINKLLRKMV 213
TVG +FK +N LWPFKL++P GW RKK H++EGGDFGNRED IN+L++KM
Sbjct: 181 TVGPHFKEVNNFLWPFKLSSPVKGWGKRKKVKHFIEGGDFGNREDFINELIKKMN 235
>gnl|CDD|100099 cd01657, Ribosomal_L7_archeal_euk, Ribosomal protein L7, which is
found in archaea and eukaryotes but not in prokaryotes,
binds domain II of the 23S rRNA as well as the 5S rRNA
and is one of five ribosomal proteins that mediate the
interactions 5S rRNA makes with the ribosome. The
eukaryotic L7 members have an N-terminal extension not
found in the archeal L7 orthologs. L7 is closely
related to the ribosomal L30 protein found in eukaryotes
and prokaryotes.
Length = 159
Score = 144 bits (365), Expect = 5e-44
Identities = 62/159 (38%), Positives = 85/159 (53%), Gaps = 48/159 (30%)
Query: 103 LAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVG----------------- 145
L V+RIRGI V PK+RKTLQLLRLR+INN +FV+L K ++G
Sbjct: 1 LYAVVRIRGIVGVPPKIRKTLQLLRLRRINNAVFVKLTKATIGMLKKVEPYVTWGEPNLE 60
Query: 146 -------------------------------KQNIICVEDLIHEVFTVGDNFKYASNALW 174
K+ IIC+EDL HE++T G NFK +N L
Sbjct: 61 TLRELIYKRGRLKGNGQRIPLTDNYLVEKTLKKGIICIEDLAHEIYTGGPNFKEVNNFLP 120
Query: 175 PFKLNNPTGGWRKKTIHYVEGGDFGNREDKINKLLRKMV 213
PF+L+ P GG++ K H+ EGG+ G R + IN+L+R+M+
Sbjct: 121 PFRLHPPRGGFKGKKRHFSEGGELGYRGEDINELIRRMI 159
>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain. This
presumed domain is found at the N-terminus of Ribosomal
L30 proteins and has been termed RL30NT or NUC018.
Length = 71
Score = 77.3 bits (191), Expect = 5e-19
Identities = 43/71 (60%), Positives = 50/71 (70%)
Query: 31 SVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLMREAK 90
S+LKKRK+ E R K+ A RKKK + IF RAEKYVK YRA ERDEIRL REAK
Sbjct: 1 SLLKKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFKRAEKYVKEYRAAERDEIRLKREAK 60
Query: 91 KRGNYYIPGEA 101
K+GN+Y+P E
Sbjct: 61 KKGNFYVPAEP 71
>gnl|CDD|235683 PRK06049, rpl30p, 50S ribosomal protein L30P; Reviewed.
Length = 154
Score = 54.4 bits (132), Expect = 1e-09
Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 42/150 (28%)
Query: 106 VIRIRGINRVAPKVRKTLQLLRLRQINNGIFVR--------LNKVS----VGKQNIICVE 153
VIRIRG V + TL++LRL ++N+ + V L KV G+ + +
Sbjct: 5 VIRIRGRVNVPRDIADTLKMLRLHRVNHCVLVPETPSYKGMLQKVKDYVTWGEIDADTLA 64
Query: 154 DLI-HEVFTVGD----------NFKYAS-----NALW--------------PFKLNNPTG 183
+L+ G+ N Y S AL F+L+ P G
Sbjct: 65 ELLRKRGRLEGNKKLTDEYVKENTGYDSIEELAEALVEGEIKLKDLPGLKPVFRLHPPRG 124
Query: 184 GWRKKTIHYVEGGDFGNREDKINKLLRKMV 213
G+ + EGG+ G R +KIN+LLR+M
Sbjct: 125 GFGGIKRPFKEGGELGYRGEKINELLRRMR 154
>gnl|CDD|201157 pfam00327, Ribosomal_L30, Ribosomal protein L30p/L7e. This family
includes prokaryotic L30 and eukaryotic L7.
Length = 52
Score = 49.7 bits (120), Expect = 9e-09
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 103 LAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVGKQNIICVEDLI 156
L + RIR I PK +KTL+LL LR+IN +FV+ G V+ L+
Sbjct: 1 LLKITRIRSIIGRPPKQKKTLKLLGLRKINQTVFVKDTPAIRGMLRK--VKHLV 52
>gnl|CDD|100098 cd00355, Ribosomal_L30_like, Ribosomal protein L30, which is found
in eukaryotes and prokaryotes but not in archaea, is one
of the smallest ribosomal proteins with a molecular mass
of about 7kDa. L30 binds the 23SrRNA as well as the 5S
rRNA and is one of five ribosomal proteins that mediate
the interactions 5S rRNA makes with the ribosome. The
eukaryotic L30 members have N- and/or C-terminal
extensions not found in their prokaryotic orthologs.
L30 is closely related to the ribosomal L7 protein found
in eukaryotes and archaea.
Length = 53
Score = 49.3 bits (119), Expect = 1e-08
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 105 FVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVGKQNIICVEDLI 156
V R+R + PK RKTL+ L LR+IN +FV+ G V+ L+
Sbjct: 1 KVTRVRSLIGRPPKQRKTLKALGLRKINQTVFVKDTPSIRGMLRK--VKHLV 50
>gnl|CDD|224754 COG1841, RpmD, Ribosomal protein L30/L7E [Translation, ribosomal
structure and biogenesis].
Length = 55
Score = 45.6 bits (109), Expect = 3e-07
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 105 FVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNK 141
V IR PK+RKTL+LL LR+IN+ + V
Sbjct: 2 KVTLIRSPIGRPPKIRKTLRLLGLRKINHTVIVEDTP 38
>gnl|CDD|130376 TIGR01309, L30P_arch, 50S ribosomal protein L30P, archaeal. This
model represents the archaeal ribosomal protein similar
to longer (~ 250 residue) eukaryotic 60S ribosomal
protein L7 and to the much shorter (~ 60 residue)
bacterial 50S ribosomal protein L30. Protein naming
follows the SwissProt designation as L30P, while the
gene symbol rpmD follows TIGR usage [Protein synthesis,
Ribosomal proteins: synthesis and modification].
Length = 152
Score = 43.9 bits (104), Expect = 9e-06
Identities = 39/152 (25%), Positives = 59/152 (38%), Gaps = 46/152 (30%)
Query: 106 VIRIRGINRVAPKVRKTLQLLRLRQINNGIFVR--------LNKVS-------------- 143
VIRIRG V + TL++LRL ++N+ + L KV
Sbjct: 3 VIRIRGTVDVPRDIADTLEMLRLHRVNHCVLYPETPTYLGMLQKVKDYVTWGEIDEDTLE 62
Query: 144 ---------VGKQNII-----------CVEDLIHEVFTVGDNFKYASNALWPFKLNNPTG 183
VG + V++L + A F+L+ P
Sbjct: 63 LLIRKRGRLVGGDKVTDEYVKEVTGYESVDELAKALVEGEIKLSEAGLKP-VFRLHPPRK 121
Query: 184 GWRK--KTIHYVEGGDFGNREDKINKLLRKMV 213
G++ KT Y +GG+ G R +KIN+LLR+M
Sbjct: 122 GFKGGIKT-PYRDGGELGYRGEKINELLRRMR 152
>gnl|CDD|232945 TIGR00376, TIGR00376, DNA helicase, putative. The gene product may
represent a DNA helicase. Eukaryotic members of this
family have been characterized as binding certain
single-stranded G-rich DNA sequences (GGGGT and GGGCT).
A number of related proteins are characterized as
helicases [DNA metabolism, DNA replication,
recombination, and repair].
Length = 637
Score = 32.9 bits (75), Expect = 0.13
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 29 PESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKER--DEIRLM 86
P +LK K+ +I H K +A+ ++K E+ K +K K R +I+++
Sbjct: 234 PARLLKSNKQHSLDYLIENHPKYQIVADIREKIDELIEERNKKLKPSPQKRRGLSDIKIL 293
Query: 87 REAKKRGNYYIPGEAKLAFVIRIRGINR 114
R+A K+ G L I
Sbjct: 294 RKALKKREA--RGIESLKIASMAEWIET 319
>gnl|CDD|234622 PRK00085, recO, DNA repair protein RecO; Reviewed.
Length = 247
Score = 29.5 bits (67), Expect = 1.1
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
Query: 32 VLKKRKKRENSRIISL----HKKLTALA--NRKKKTR 62
VL R E S I++L H ++ A+A R+ K+R
Sbjct: 10 VLHTRPYGETSLIVTLFTREHGRVRAVAKGARRPKSR 46
>gnl|CDD|232820 TIGR00089, TIGR00089, radical SAM methylthiotransferase, MiaB/RimO
family. This subfamily contains the tRNA-i(6)A37
modification enzyme, MiaB (TIGR01574). The phylogenetic
tree indicates 4 distinct clades, one of which
corresponds to MiaB. The other three clades are modelled
by hypothetical equivalogs (TIGR01125, TIGR01579 and
TIGR01578). Together, the four models hit every sequence
hit by the subfamily model without any overlap between
them. This subfamily is aparrently a part of a larger
superfamily of enzymes utilizing both a 4Fe4S cluster
and S-adenosyl methionine (SAM) to initiate radical
reactions. MiaB acts on a particular isoprenylated
Adenine base of certain tRNAs causing thiolation at an
aromatic carbon, and probably also transferring a methyl
grouyp from SAM to the thiol. The particular substrate
of the three other clades is unknown but may be very
closely related.
Length = 429
Score = 29.1 bits (66), Expect = 1.6
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 28 VPESVLKKRKKRENSRIISLHKKLTALANRKK--KTREIFIRAEKYVKAYRAKERDE 82
VPE V K+R + R+I+L K+++ N+K KT E+ + E+ K R E
Sbjct: 343 VPEEVKKERLE----RLIALQKEISLEKNKKYVGKTLEVLVEGEEGKKEGELTGRTE 395
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 28.9 bits (65), Expect = 1.7
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 5 EKKAATAGKPKEPKPKTKKGLPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREI 64
+ AA + K P+PK K ++L +++ + +K+ T + + K REI
Sbjct: 106 DPTAAKSPKAAAPRPKKKSERISWAPTLLDSPRRKSSRSSTVQNKEAT---HERLKEREI 162
Query: 65 FIRAEKYVKAYRAKERDEIR------LMREAKK 91
R + KA + KE+ + + + EAK+
Sbjct: 163 -RRKKIQAKARKRKEKKKEKELTQEERLAEAKE 194
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 29.3 bits (65), Expect = 1.7
Identities = 23/91 (25%), Positives = 44/91 (48%)
Query: 2 ADVEKKAATAGKPKEPKPKTKKGLPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKT 61
A+ KKA K +E K ++ E ++ +K E +R+ ++ A+ + +
Sbjct: 1220 AEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARK 1279
Query: 62 REIFIRAEKYVKAYRAKERDEIRLMREAKKR 92
+ +AE+ KA AK+ +E + EAKK+
Sbjct: 1280 ADELKKAEEKKKADEAKKAEEKKKADEAKKK 1310
>gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional.
Length = 428
Score = 28.9 bits (65), Expect = 2.3
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 30 ESVLKKRKKRENSRIISLHK---KLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLM 86
E +RKK SL K +L+ L + + R+ RAE+ KA +E E +
Sbjct: 211 EQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAEREAKARAEREAREAARV 270
Query: 87 R----EAKKRGNYYIPGEAKLAFVIRIRGINRVA 116
R +AK++G+ Y P E++ + + R G+ R
Sbjct: 271 RDKQKQAKRKGSTYKPTESERSLMSRTGGLGRPR 304
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This
family includes gbp a protein from Soybean that binds to
GAGA element dinucleotide repeat DNA. It seems likely
that the this domain mediates DNA binding. This putative
domain contains several conserved cysteines and a
histidine suggesting this may be a zinc-binding DNA
interaction domain.
Length = 301
Score = 28.3 bits (63), Expect = 2.8
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 6 KKAATAGKPKEPKPKTKKGLPVVPESVLKKRKKRENSRI 44
KK + PK PKPK K V +K S+
Sbjct: 151 KKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKP 189
>gnl|CDD|221346 pfam11967, RecO_N, Recombination protein O N terminal.
Recombination protein O (RecO) is involved in DNA
repair and pfam00470 pathway recombination. This domain
forms a beta barrel structure.
Length = 80
Score = 26.4 bits (59), Expect = 3.5
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 32 VLKKRKKRENSRIISL----HKKLTALANRKKKTR 62
VL+ R E+ +I++L H K++ +A +K +
Sbjct: 10 VLRTRDYGESDKIVTLFTREHGKISGVARGARKPK 44
>gnl|CDD|224837 COG1926, COG1926, Predicted phosphoribosyltransferases [General
function prediction only].
Length = 220
Score = 27.7 bits (62), Expect = 4.3
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 68 AEKYVKAYRAKERDEIRLMREAKKRGNYYIPGEAKLAFVI 107
+ Y++A A+ER E+ REA + G + + ++
Sbjct: 91 DDAYIEAAAARERKELLRRREAYRGGRPVPSLKGRTVILV 130
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 27.8 bits (62), Expect = 4.4
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 52 TALANRKKKTREIFIRAEKYVKAYRA-KERDEIRLMREA 89
+ R + A V R K EI +R+A
Sbjct: 128 AFERLQAALPRAELVDASDLVDRLRLIKSPAEIAKIRKA 166
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 27.3 bits (61), Expect = 5.4
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 13 KPKEPKPKTKKGLPVVPESVLKKRKKR 39
KPK PKPK K + P+ +K + R
Sbjct: 102 KPK-PKPKPVKKVEEQPKREVKPVEPR 127
>gnl|CDD|240028 cd04671, Nudix_Hydrolase_13, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent
cation, such as Mg2+ or Mn2+, for their activity and
contain a highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability,
thereby serving as surveillance & "house-cleaning"
enzymes. Substrate specificity is used to define
families within the superfamily. Differences in
substrate specificity are determined by the N-terminal
extension or by residues in variable loop regions.
Mechanistically, substrate hydrolysis occurs by a
nucleophilic substitution reaction, with variation in
the numbers and roles of divalent cations required.
Length = 123
Score = 26.6 bits (59), Expect = 6.2
Identities = 9/22 (40%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Query: 79 ERDEIRLMREAKK--RGNYYIP 98
+ E+ L++EAK+ RG +Y+P
Sbjct: 10 NQGEVLLIQEAKRSCRGKWYLP 31
>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily). This Pfam
entry includes some of the AAA proteins not detected by
the pfam00004 model.
Length = 135
Score = 26.5 bits (59), Expect = 6.2
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 71 YVKAYRAKERDEIRLMREAKKRGNYYIPGE----AKLAFVIRIRGINRVAPKVRKTLQLL 126
YV+ R ++++ R G ++ G A+ + + INR P V +L L
Sbjct: 30 YVQLTRDTTEEDLKGRRNIDPGGASWVDGPLVRAAREGEIAVLDEINRANPDVLNSLLSL 89
Query: 127 ---RLRQINNG 134
R + G
Sbjct: 90 LDERRLLLPEG 100
>gnl|CDD|180892 PRK07220, PRK07220, DNA topoisomerase I; Validated.
Length = 740
Score = 27.4 bits (61), Expect = 6.8
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 5 EKKAATAGKPKEPKPKTKKGLPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREI 64
++K A +PK+ KPK+ K + + + K +K E + I ++ A KT +I
Sbjct: 671 KQKEEKAQQPKKEKPKSIKDIKGIGK---KTAEKLEEAGITTVEALAEADPVELSKTTKI 727
Query: 65 FIRAEK 70
++ K
Sbjct: 728 SVKKIK 733
>gnl|CDD|237676 PRK14329, PRK14329, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 467
Score = 27.3 bits (61), Expect = 7.2
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 28 VPESVLKKRKKRENSRIISLHKKLTALANRKK--KTREIFI 66
VPE V KKR + II+L ++L+ N++ KT E+ I
Sbjct: 378 VPEEV----KKRRLNEIIALQQELSLERNQRDIGKTFEVLI 414
>gnl|CDD|220086 pfam08982, DUF1857, Domain of unknown function (DUF1857). This
domain has no known function. It is found in various
hypothetical bacterial and fungal proteins.
Length = 147
Score = 26.1 bits (58), Expect = 8.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 68 AEKYVKAYRAKERDEIRLMRE 88
E +AY+A + D +R +RE
Sbjct: 123 QEIVKQAYKAADIDTVRTIRE 143
>gnl|CDD|176480 cd08643, DNA_pol_A_pol_I_B, Polymerase I functions primarily to
fill DNA gaps that arise during DNA repair,
recombination and replication. Family A polymerase
functions primarily to fill DNA gaps that arise during
DNA repair, recombination and replication. DNA-dependent
DNA polymerases can be classified in six main groups
based upon phylogenetic relationships with E. coli
polymerase I (classA), E. coli polymerase II (class B),
E.coli polymerase III (class C), euryarchaaeota
polymerase II (class D), human polymerase beta (class
x), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma
pigmentosum variant (class Y). Family A polymerase are
found primarily in organisms related to prokaryotes and
include prokaryotic DNA polymerase I ,mitochondrial
polymerase delta, and several bacteriphage polymerases
including those from odd-numbered phage (T3, T5, and
T7). Prokaryotic Pol Is have two functional domains
located on the same polypeptide; a 5'-3' polymerase and
5'-3' exonuclease. Pol I uses its 5' nuclease activity
to remove the ribonucleotide portion of newly
synthesized Okazaki fragments and DNA polymerase
activity to fill in the resulting gap. A combination of
phylogenomic and signature sequence-based (or phonetic)
approaches is used to understand the evolutionary
relationships among bacteria. DNA polymerase I is one of
the conserved proteins that is used to search for
protein signatures. The structure of these polymerases
resembles in overall morphology a cupped human right
hand, with fingers (which bind an incoming nucleotide
and interact with the single-stranded template), palm
(which harbors the catalytic amino acid residues and
also binds an incoming dNTP) and thumb (which binds
double-stranded DNA) subdomains.
Length = 429
Score = 27.0 bits (60), Expect = 8.9
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 16 EPKPKTKKGLPVVPESVLKKRKKREN---SRIISLHKKLTALANRKKK 60
EP+ T+ G P V E VL K E + + + K+L LA+
Sbjct: 84 EPQEFTESGEPKVDEDVLSKLDYPEAKLLAEYLLVQKRLGQLADGNNA 131
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.390
Gapped
Lambda K H
0.267 0.0666 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,008,062
Number of extensions: 1060165
Number of successful extensions: 1333
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1297
Number of HSP's successfully gapped: 91
Length of query: 213
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 120
Effective length of database: 6,812,680
Effective search space: 817521600
Effective search space used: 817521600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)