RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1312
(213 letters)
>d1vqow1 d.59.1.1 (W:1-154) Archaeal L30 (L30a) {Archaeon Haloarcula
marismortui [TaxId: 2238]}
Length = 154
Score = 101 bits (253), Expect = 5e-28
Identities = 20/154 (12%), Positives = 42/154 (27%), Gaps = 45/154 (29%)
Query: 103 LAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNK--------------------- 141
+ ++++RG + ++ TL++L + +N+ V
Sbjct: 1 MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQE 60
Query: 142 ----------------------VSVGKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLN 179
+ + L + + + +L+
Sbjct: 61 TLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLS-EETTLREQGLSPTLRLH 119
Query: 180 NPTGGWRKKTIHYVEGGDFGN-REDKINKLLRKM 212
P GG EGG G + I+ LL M
Sbjct: 120 PPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAM 153
>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella
typhimurium [TaxId: 90371]}
Length = 417
Score = 28.4 bits (63), Expect = 0.60
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 10/57 (17%)
Query: 42 SRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLMREAKKRGNYYIP 98
+ I + + L A + + +F R + EI + K +G P
Sbjct: 14 AAIRQMKQALRA---QIGDVQAVFDRLSATIA----ARVAEIN---DLKAQGQPVWP 60
>d1u5ka1 b.40.4.13 (A:2-80) Recombinational repair protein RecO,
N-terminal domain {Deinococcus radiodurans [TaxId:
1299]}
Length = 79
Score = 26.7 bits (59), Expect = 0.69
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 5/64 (7%)
Query: 32 VLKKRKKRENSRIISL---HKKLTALA--NRKKKTREIFIRAEKYVKAYRAKERDEIRLM 86
V+++R I++L KL A+A K +++ +
Sbjct: 11 VIRRRVTPAGDIIVTLLTPQGKLKAIARGGVKGPLSSSLNLFHHVGVQVYQGPHNDLASV 70
Query: 87 REAK 90
++A
Sbjct: 71 KQAV 74
>d2gycx1 d.59.1.1 (X:3-58) Prokaryotic ribosomal protein L30
{Escherichia coli [TaxId: 562]}
Length = 56
Score = 26.0 bits (58), Expect = 0.80
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 106 VIRIRGINRVAPKVRKTLQLLRLRQIN 132
+ + R PK + TL L LR+I
Sbjct: 4 ITQTRSAIGRLPKHKATLLGLGLRRIG 30
>d1tova_ b.34.10.1 (A:) Cytoskeleton-associated protein F53F4.3
{Caenorhabditis elegans [TaxId: 6239]}
Length = 98
Score = 25.5 bits (56), Expect = 2.0
Identities = 7/16 (43%), Positives = 7/16 (43%)
Query: 130 QINNGIFVRLNKVSVG 145
G FVR V VG
Sbjct: 73 DPKYGGFVRPVDVKVG 88
>d1bxya_ d.59.1.1 (A:) Prokaryotic ribosomal protein L30 {Thermus
thermophilus [TaxId: 274]}
Length = 60
Score = 24.9 bits (55), Expect = 2.2
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 106 VIRIRGINRVAPKVRKTLQLLRLRQIN 132
V ++ + L+ L LR++
Sbjct: 6 VKLVKSPIGYPKDQKAALKALGLRRLQ 32
>d2cx1a2 d.17.6.4 (A:1-90) Hypothetical protein APE0525,
N-terminal domain {Archaeon Aeropyrum pernix [TaxId:
56636]}
Length = 90
Score = 25.0 bits (54), Expect = 3.3
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 42 SRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLMREAKKRGNYYI 97
+R++ L +L A A KK+ R + R + Y E+ ++RL++ G Y I
Sbjct: 4 ARLVGL-ARLEARALSKKERRSLLERLKPYYTRIPFSEKADLRLVKARTDSGEYEI 58
>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 113
Score = 25.2 bits (55), Expect = 3.8
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 132 NNGIFVRLNKVSVG 145
G FV+ + V+VG
Sbjct: 93 KYGAFVKPSAVTVG 106
>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 511
Score = 25.8 bits (56), Expect = 4.4
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 173 LWPFKLNNPTGGWRKKTIHYVEGGD 197
L P TG + TI + GD
Sbjct: 218 LVPIYTFPDTGKFGASTIRFGSRGD 242
>d2coza1 b.34.10.1 (A:8-116) Centrosome-associated protein 350
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 24.4 bits (53), Expect = 6.1
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 132 NNGIFVRLNKVSVGKQN 148
+GIF K+S +N
Sbjct: 81 KHGIFAPPQKISHIPEN 97
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 24.1 bits (52), Expect = 6.7
Identities = 12/59 (20%), Positives = 26/59 (44%)
Query: 34 KKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLMREAKKR 92
+KR+ SL + +L K +I +A +Y++ R K + + + K++
Sbjct: 11 RKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQ 69
>d1whla_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld
{Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 24.1 bits (52), Expect = 7.5
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 132 NNGIFVRLNKVSVG 145
+ G+FV L+K+ +
Sbjct: 75 DCGVFVALDKLELI 88
>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Trichoderma reesei [TaxId: 51453]}
Length = 488
Score = 25.0 bits (54), Expect = 8.8
Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 153 EDLIHEVFTVGDNFKYASNA---LWPFKLNNPTGGWRKKTIHYVEGGDF 198
L + + N K + A L ++ G ++ + + D
Sbjct: 192 AQLAQKGESYLLNPKGSPEAWPGLIGTFVSTSNGTFQDSSGSWSGLMDS 240
>d2zjrw1 d.59.1.1 (W:1-55) Prokaryotic ribosomal protein L30
{Deinococcus radiodurans [TaxId: 1299]}
Length = 55
Score = 23.0 bits (50), Expect = 9.5
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 106 VIRIRGINRVAPKVRKTLQLLRLRQIN 132
+ +R + KT+Q L LR+I
Sbjct: 3 IKLVRSVIGRPGNQVKTVQALGLRKIG 29
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.390
Gapped
Lambda K H
0.267 0.0772 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 790,868
Number of extensions: 38005
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 23
Length of query: 213
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 131
Effective length of database: 1,281,736
Effective search space: 167907416
Effective search space used: 167907416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)