BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13120
(384 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3
Length = 322
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 154/293 (52%), Gaps = 21/293 (7%)
Query: 4 RLEYSIVSGDDE-EIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTT 62
+++Y I+SGD IF IN G + +K LDRE K+ Y L A D K L +
Sbjct: 34 KIKY-ILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFET--NKPLEPPS 90
Query: 63 QVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDE---GQNSYVEYSIIN 118
+ I ++D+NDNAPEF+ T+PE S L T V + A D D+ G ++ + YSI+
Sbjct: 91 EFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSIL- 149
Query: 119 SEATP-FSLGPVDGLLRVA-QKLDREIKSNYTLEIKAKDRGEPSK--SSRTKFFIRLLDE 174
E P FS+ P +++ A +DRE K Y + I+AKD G S S T + L D
Sbjct: 150 -EGQPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDV 208
Query: 175 NDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGINGRVRYTIISGDDNHDLTISED 234
NDN P F Y SVPE++ +G + +V A D D G N + Y II GD I+ D
Sbjct: 209 NDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSD 268
Query: 235 ----NGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRF---DTATVSILV 280
+G++R+ K L++E K Y+L ++A + D R DTATV I+V
Sbjct: 269 AQAQDGVIRLRKPLDFETKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKIVV 321
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 136/271 (50%), Gaps = 29/271 (10%)
Query: 121 ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSK--SSRTKFFIRLLDENDNN 178
T F + + G + ++LDRE K+ YTL +A D E +K ++F I++ D NDN
Sbjct: 45 GTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDF-ETNKPLEPPSEFIIKVQDINDNA 103
Query: 179 PIFDSKSYSASVPENISVGATVLQVSATDLDDGING---RVRYTIISGDDNHDLTISEDN 235
P F + Y A+VPE +G +V V+ATD DD + G ++ Y+I+ G +I +
Sbjct: 104 PEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPY--FSIEPET 161
Query: 236 GLLRIA-KNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVFLHSP 294
+++ A N++ E K +Y + IQA+D GG + T T+++ ++D+NDN P F S
Sbjct: 162 AIIKTALPNMDREAKEEYLVVIQAKDMGGHSGG--LSGTTTLTVTLTDVNDNPPKFAQSL 219
Query: 295 YLALVNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDXXXXXXXXXXXXXXXDLFRV 354
Y V E+ + G + I V+A+D D + N Y + D LF +
Sbjct: 220 YHFSVPEDVVLGTA--IGRVKANDQD-IGENAQSSYDIIDGDGTA-----------LFEI 265
Query: 355 NSTT----GDIYLLKSLDREKQAEYLLTLQA 381
S G I L K LD E + Y L ++A
Sbjct: 266 TSDAQAQDGVIRLRKPLDFETKKSYTLKVEA 296
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 98/201 (48%), Gaps = 33/201 (16%)
Query: 189 SVPENISVGATVLQVSATDLDDGINGRVRYTIISGDDNHDL-TISEDNGLLRIAKNLNYE 247
S PE I VG TDLD G + +++Y I+SGD + I++ G + K L+ E
Sbjct: 14 SGPEPILVGRL-----HTDLDPG-SKKIKY-ILSGDGAGTIFQINDITGDIHAIKRLDRE 66
Query: 248 RKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVFLHSPYLALVNENTLPGP 307
KA+Y+LT QA D +T + + + + I V DINDN P FL+ PY A V E ++ G
Sbjct: 67 EKAEYTLTAQAVDF--ETNKPLEPPSEFI-IKVQDINDNAPEFLNGPYHATVPEMSILGT 123
Query: 308 SFRIMTVQAHDADSLPFNG----LVRYFLKDXXXXXXXXXXXXXXXDLFRVNSTTGDIY- 362
S + V A DAD P G LV L+ F + T I
Sbjct: 124 S--VTNVTATDADD-PVYGNSAKLVYSILEGQP--------------YFSIEPETAIIKT 166
Query: 363 LLKSLDREKQAEYLLTLQAMD 383
L ++DRE + EYL+ +QA D
Sbjct: 167 ALPNMDREAKEEYLVVIQAKD 187
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 116/393 (29%), Positives = 176/393 (44%), Gaps = 44/393 (11%)
Query: 2 NGRLEYSIVS-GDDEE---IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKR 57
N L YS+ G D+ IF INP +G LS K LDRE + ++L A D+ +
Sbjct: 31 NLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDING---NQ 87
Query: 58 LSSTTQVSIVIRDVNDNAPEFI-TANETTIPENSPLNTVVAALKAIDRDE--GQNSYVEY 114
+ + + I + D+NDN PEF+ ++PE S T V + AID D+ N + Y
Sbjct: 88 VENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRY 147
Query: 115 SIIN-SEATP----FSLGPVDG-LLRVAQKLDREIKSNYTLEIKAKD-RGEPSK--SSRT 165
I++ + +TP F++ G ++ VA LDRE YTL I+A D G P+ S+
Sbjct: 148 RILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTA 207
Query: 166 KFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGIN--GRVRYTIISG 223
I + D NDN P F + ++ VPEN V V ++ TD D Y I G
Sbjct: 208 TAVITVTDVNDNPPEFTAMTFYGEVPEN-RVDVIVANLTVTDKDQPHTPAWNAAYRISGG 266
Query: 224 DDNHDLTISED----NGLLRIAKNLNYERKAQYSLTIQAEDCGGDTE--ERIRFDTATVS 277
D I D +GL+ + K +++E + LT+ AE+ + + TATVS
Sbjct: 267 DPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVS 326
Query: 278 ILVSDINDNYPVFLHSPYLALVNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDXXX 337
+ V D+N+N P F +P + E G +T Q D RY ++
Sbjct: 327 VTVIDVNEN-PYFAPNPKIIRQEEGLHAGTMLTTLTAQDPD----------RYMQQN--- 372
Query: 338 XXXXXXXXXXXXDLFRVNSTTGDIYLLKSLDRE 370
+ +++ G I + LDRE
Sbjct: 373 --IRYTKLSDPANWLKIDPVNGQITTIAVLDRE 403
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 118/231 (51%), Gaps = 18/231 (7%)
Query: 86 IPENS--PLNTVVAALKAIDRDEGQNSYVEYSIINSEA--TP---FSLGPVDGLLRVAQK 138
+PENS P + +++ DRD +N + YS+ A P F + P+ G L V +
Sbjct: 9 LPENSRGPFPQELVRIRS-DRD--KNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 65
Query: 139 LDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGA 198
LDRE+ + + L A D + I ++D NDN P F + ++ SVPE G
Sbjct: 66 LDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGT 125
Query: 199 TVLQVSATDLDD--GINGRVRYTIISGDDN----HDLTISEDNG-LLRIAKNLNYERKAQ 251
V+ V+A D DD +NG +RY I+S + + TI+ + G ++ +A L+ E+ Q
Sbjct: 126 YVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQ 185
Query: 252 YSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVFLHSPYLALVNEN 302
Y+L IQA D G+ + +TAT I V+D+NDN P F + V EN
Sbjct: 186 YTLIIQATDMEGNPTYGLS-NTATAVITVTDVNDNPPEFTAMTFYGEVPEN 235
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 135/314 (42%), Gaps = 32/314 (10%)
Query: 2 NGRLEYSIVSG----DDEEIFTINPSNGTLSNLKH-LDRETKSSYNLVVMATDMAKPPQK 56
NG L Y I+S +FTIN G + + LDRE Y L++ ATDM P
Sbjct: 142 NGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTY 201
Query: 57 RLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYS 115
LS+T I + DVNDN PEF +PEN ++ +VA L D+D+ +
Sbjct: 202 GLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENR-VDVIVANLTVTDKDQPHTPAWNAA 260
Query: 116 IINSEATPFSLGPV-------DGLLRVAQKLDREIKSNYTLEIKAKDR-------GEPSK 161
S P + DGL+ V + +D E + L + A+++ P +
Sbjct: 261 YRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQ 320
Query: 162 SSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGINGRVRYTII 221
S+ T + ++D N+ NP F E + G + ++A D D + +RYT +
Sbjct: 321 STAT-VSVTVIDVNE-NPYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKL 378
Query: 222 SGDDNHDLTISEDNGLLRIAKNLNYE----RKAQYSLTIQAEDCGGDTEERIRFDTATVS 277
S D + L I NG + L+ E + Y+ T A D G T T+
Sbjct: 379 S-DPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMS----GTGTLQ 433
Query: 278 ILVSDINDNYPVFL 291
I + DINDN P L
Sbjct: 434 IYLLDINDNAPQVL 447
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 77/155 (49%), Gaps = 15/155 (9%)
Query: 231 ISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVF 290
I+ +G L + K L+ E A++ L A D G+ E + + I V D+NDN P F
Sbjct: 53 INPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVE----NPIDIVINVIDMNDNRPEF 108
Query: 291 LHSPYLALVNENTLPGPSFRIMTVQAHDADSL-PFNGLVRYFLKDXXXXXXXXXXXXXXX 349
LH + V E + PG +MTV A DAD NG++RY +
Sbjct: 109 LHQVWNGSVPEGSKPG--TYVMTVTAIDADDPNALNGMLRYRI-------LSQAPSTPSP 159
Query: 350 DLFRVNSTTGDIYLLKS-LDREKQAEYLLTLQAMD 383
++F +N+ TGDI + + LDREK +Y L +QA D
Sbjct: 160 NMFTINNETGDIITVAAGLDREKVQQYTLIIQATD 194
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 42/195 (21%)
Query: 5 LEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS----YNLVVMATDMAKPPQKRLSS 60
+ Y+ +S D I+P NG ++ + LDRE+ + YN +A+D PP +S
Sbjct: 373 IRYTKLS-DPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPP---MSG 428
Query: 61 TTQVSIVIRDVNDNAPEFITANETTI--PENSPLNTVVAALKAIDRDEGQNSYVEYSIIN 118
T + I + D+NDNAP+ + T PE + +N + A+D D I+
Sbjct: 429 TGTLQIYLLDINDNAPQVLPQEAETCETPEPNSIN-----ITALDYD-----------ID 472
Query: 119 SEATPFS----LGPV--------DGLLRVAQKLDREIK----SNYTLEIKAKDRGEPSKS 162
A PF+ L PV + L +L+ +IK Y + I D G P KS
Sbjct: 473 PNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITDSGNPPKS 532
Query: 163 SRTKFFIRLLDENDN 177
+ + +++ + N
Sbjct: 533 NISILRVKVCQCDSN 547
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain
pdb|3Q2V|B Chain B, Crystal Structure Of Mouse E-Cadherin Ectodomain
Length = 550
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 98/199 (49%), Gaps = 15/199 (7%)
Query: 131 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 190
G L+V Q LDRE + Y L A + + I + D+NDN P F + + SV
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 117
Query: 191 PENISVGATVLQVSATDLDDGI---NGRVRYTIISGD----DNHDLTISEDNGLLRI-AK 242
E G +V++VSATD DD + N + YTI+S D + T++ D G++ +
Sbjct: 118 AEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTS 177
Query: 243 NLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVFLHSPYLALVNEN 302
L+ E Y+L +QA D G+ TA I V DINDN PVF S Y V EN
Sbjct: 178 GLDRESYPTYTLVVQAADLQGEGLST----TAKAVITVKDINDNAPVFNPSTYQGQVPEN 233
Query: 303 TLPGPSFRIMTVQAHDADS 321
+ + RI T++ D D+
Sbjct: 234 EV---NARIATLKVTDDDA 249
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 105/388 (27%), Positives = 175/388 (45%), Gaps = 43/388 (11%)
Query: 17 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 76
+F I G L + LDRE + Y L A + + ++ I + D NDN P
Sbjct: 50 VFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNG---EAVEDPMEIVITVTDQNDNRP 106
Query: 77 EFIT-ANETTIPENSPLNTVVAALKAIDRDEGQNSY---VEYSIINSEA-----TPFSLG 127
EF E ++ E + T V + A D D+ N+Y + Y+I++ + F++
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 128 PVDGLLRV-AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSY 186
G++ V LDRE YTL ++A D S+ K I + D NDN P+F+ +Y
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTY 226
Query: 187 SASVPENISVGATVLQVSATDLDDGIN---GRVRYTIISGDDNHDLTISE---DNGLLRI 240
VPEN V A + + TD DD N + YT+++ D + +++ ++G+L+
Sbjct: 227 QGQVPEN-EVNARIATLKVTD-DDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKT 284
Query: 241 AKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVFLHSPYLALVN 300
AK L++E K QY L ++ E+ E + TATV++ V D+N+ P+F+ + V
Sbjct: 285 AKGLDFEAKQQYILHVRVEN-EEPFEGSLVPSTATVTVDVVDVNE-APIFMPAERRVEVP 342
Query: 301 ENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDXXXXXXXXXXXXXXXDLFRVNSTTGD 360
E+ G I + A + D+ + +D + +N TG
Sbjct: 343 EDF--GVGQEITSYTAREPDTFMDQKITYRIWRD-------------TANWLEINPETGA 387
Query: 361 IYLLKSLDRE-----KQAEYLLTLQAMD 383
I+ +DRE K + Y+ + A D
Sbjct: 388 IFTRAEMDREDAEHVKNSTYVALIIATD 415
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 133/281 (47%), Gaps = 26/281 (9%)
Query: 2 NGRLEYSIVSGDDE----EIFTINPSNGTLSNLKH-LDRETKSSYNLVVMATDMAKPPQK 56
N + Y+IVS D E +FT+N G +S L LDRE+ +Y LVV A D+ +
Sbjct: 143 NAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQG---E 199
Query: 57 RLSSTTQVSIVIRDVNDNAPEF-ITANETTIPENSPLNTVVAALKAIDRDEGQNSYVE-- 113
LS+T + I ++D+NDNAP F + + +PEN +N +A LK D D +
Sbjct: 200 GLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENE-VNARIATLKVTDDDAPNTPAWKAV 258
Query: 114 YSIINSEATPFSL--GPV--DGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSS---RTK 166
Y+++N F + P DG+L+ A+ LD E K Y L ++ ++ EP + S T
Sbjct: 259 YTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENE-EPFEGSLVPSTA 317
Query: 167 FFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGINGRVRYTIISGDDN 226
+ + + PIF VPE+ VG + +A + D ++ ++ Y I N
Sbjct: 318 TVTVDVVDVNEAPIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDTAN 377
Query: 227 HDLTISEDNGLLRIAKNLNYE-----RKAQYSLTIQAEDCG 262
L I+ + G + ++ E + + Y I A D G
Sbjct: 378 W-LEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDG 417
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 10/162 (6%)
Query: 7 YSIVSGDDEEIFTI-NPS--NGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQ 63
Y++V+ D++ + +P+ +G L K LD E K Y L V + +P + L +T
Sbjct: 259 YTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVEN-EEPFEGSLVPSTA 317
Query: 64 VSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEAT 122
V + AP F+ A +PE+ + + + A + D + + Y I A
Sbjct: 318 TVTVDVVDVNEAPIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDTAN 377
Query: 123 PFSLGPVDGLLRVAQKLDRE----IK-SNYTLEIKAKDRGEP 159
+ P G + ++DRE +K S Y I A D G P
Sbjct: 378 WLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSP 419
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 127/277 (45%), Gaps = 23/277 (8%)
Query: 4 RLEYSIVS-GDD---EEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLS 59
++ YSI G D + +F I G + + LDRE Y L A P +
Sbjct: 188 KVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSP---VE 244
Query: 60 STTQVSIVIRDVNDNAPEFIT-ANETTIPENSPLNTVVAALKAIDRD---EGQNSYVEYS 115
+++I + D NDN P+F ++ E T V A+ A D D + N + YS
Sbjct: 245 EPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYS 304
Query: 116 IINS---EATP--FSLGPVDGLLR-VAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFI 169
I+ E P F++ G++ + LDRE YTL ++A D S K I
Sbjct: 305 ILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAII 364
Query: 170 RLLDENDNNPIFDSKSYSASVPENISVGATVLQVSATDLD-DGINGRVRYTIISGDDNHD 228
++ D NDN PIFD K+Y+A VPEN +G V ++S TDLD G I ++
Sbjct: 365 QITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGF 423
Query: 229 LTISED----NGLLRIAKNLNYERKAQYSLTIQAEDC 261
I+ D G+L AK L++E + QY L I E+
Sbjct: 424 FNITTDPESNQGILTTAKGLDFELRKQYVLQITVENA 460
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 98/199 (49%), Gaps = 17/199 (8%)
Query: 131 GLLRVAQKLDREIKSNYTLEIKA-KDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSAS 189
G + V + LDRE Y L A + G P + + I ++D+NDN P F + S
Sbjct: 213 GWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEP-MEITINVIDQNDNRPKFTQDVFRGS 271
Query: 190 VPENISVGATVLQVSATDLDDGI---NGRVRYTIISGDDNHDL----TISEDNGLLR-IA 241
V E + G V+ VSATD DD I NG + Y+I+ D + TI+ + G++ I
Sbjct: 272 VREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIG 331
Query: 242 KNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVFLHSPYLALVNE 301
L+ E+ +Y+LT+QA D G + + + I ++D NDN P+F Y ALV E
Sbjct: 332 TGLDREKFPEYTLTVQATDLEG---AGLSVEGKAI-IQITDANDNAPIFDPKTYTALVPE 387
Query: 302 NTLPGPSFRIMTVQAHDAD 320
N + F + + D D
Sbjct: 388 NEI---GFEVQRLSVTDLD 403
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 102/342 (29%), Positives = 155/342 (45%), Gaps = 38/342 (11%)
Query: 2 NGRLEYSIVSGDDEE----IFTINPSNGTLSNL-KHLDRETKSSYNLVVMATDMAKPPQK 56
NG L YSI+ D EE +FTIN G +S + LDRE Y L V ATD+
Sbjct: 298 NGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEG---A 354
Query: 57 RLSSTTQVSIVIRDVNDNAPEFITANETT-IPENSPLNTVVAALKAIDRD-EGQNSY-VE 113
LS + I I D NDNAP F T +PEN + V L D D G ++
Sbjct: 355 GLSVEGKAIIQITDANDNAPIFDPKTYTALVPENE-IGFEVQRLSVTDLDMPGTPAWQAV 413
Query: 114 YSIINSEATPFSLG----PVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSK---SSRTK 166
Y I +E F++ G+L A+ LD E++ Y L+I ++ EP + T
Sbjct: 414 YKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVEN-AEPFSVPLPTSTA 472
Query: 167 FFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGINGRVRYTIISGDDN 226
+++ + P F V E++S G ++ + A D D ++ Y I D
Sbjct: 473 TVTVTVEDVNEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSY-FIGNDPA 531
Query: 227 HDLTISEDNGLLRIAKNLN----YERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSD 282
LT+++DNG++ NL+ Y + Y++ + D G + T T+ + V D
Sbjct: 532 RWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDG----VSVGTGTGTLILHVLD 587
Query: 283 INDNYPVFLHSP-YLALVNENTLPGPSFRIMTVQAHDADSLP 323
+NDN PV SP + ++N P +++T+ DAD P
Sbjct: 588 VNDNGPV--PSPRVFTMCDQN----PEPQVLTIS--DADIPP 621
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 79/177 (44%), Gaps = 22/177 (12%)
Query: 215 RVRYTIIS-GDDNHD---LTISEDNGLLRIAKNLNYERKAQYSLTIQA-EDCGGDTEERI 269
+V Y+I G DN I + G + + + L+ E +Y L+ A + G EE +
Sbjct: 188 KVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPM 247
Query: 270 RFDTATVSILVSDINDNYPVFLHSPYLALVNENTLPGPSFRIMTVQAHDADSL--PFNGL 327
++I V D NDN P F + V E PG ++M V A D D NG+
Sbjct: 248 E-----ITINVIDQNDNRPKFTQDVFRGSVREGVQPG--TQVMAVSATDEDDNIDSLNGV 300
Query: 328 VRYFLKDXXXXXXXXXXXXXXXDLFRVNSTTGDIYLLKS-LDREKQAEYLLTLQAMD 383
+ Y + +LF +N TG I L+ + LDREK EY LT+QA D
Sbjct: 301 LSYSI-------LKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATD 350
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain
Length = 546
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 127/277 (45%), Gaps = 23/277 (8%)
Query: 4 RLEYSIVS-GDD---EEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLS 59
++ YSI G D + +F I G + + LDRE Y L A P +
Sbjct: 39 KVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSP---VE 95
Query: 60 STTQVSIVIRDVNDNAPEFIT-ANETTIPENSPLNTVVAALKAIDRD---EGQNSYVEYS 115
+++I + D NDN P+F ++ E T V A+ A D D + N + YS
Sbjct: 96 EPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYS 155
Query: 116 IINS---EATP--FSLGPVDGLLR-VAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFI 169
I+ E P F++ G++ + LDRE YTL ++A D S K I
Sbjct: 156 ILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAII 215
Query: 170 RLLDENDNNPIFDSKSYSASVPENISVGATVLQVSATDLD-DGINGRVRYTIISGDDNHD 228
++ D NDN PIFD K+Y+A VPEN +G V ++S TDLD G I ++
Sbjct: 216 QITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGF 274
Query: 229 LTISED----NGLLRIAKNLNYERKAQYSLTIQAEDC 261
I+ D G+L AK L++E + QY L I E+
Sbjct: 275 FNITTDPESNQGILTTAKGLDFELRKQYVLQITVENA 311
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 98/199 (49%), Gaps = 17/199 (8%)
Query: 131 GLLRVAQKLDREIKSNYTLEIKA-KDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSAS 189
G + V + LDRE Y L A + G P + + I ++D+NDN P F + S
Sbjct: 64 GWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEP-MEITINVIDQNDNRPKFTQDVFRGS 122
Query: 190 VPENISVGATVLQVSATDLDDGI---NGRVRYTIISGDDNHDL----TISEDNGLLR-IA 241
V E + G V+ VSATD DD I NG + Y+I+ D + TI+ + G++ I
Sbjct: 123 VREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIG 182
Query: 242 KNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVFLHSPYLALVNE 301
L+ E+ +Y+LT+QA D G + + + I ++D NDN P+F Y ALV E
Sbjct: 183 TGLDREKFPEYTLTVQATDLEG---AGLSVEGKAI-IQITDANDNAPIFDPKTYTALVPE 238
Query: 302 NTLPGPSFRIMTVQAHDAD 320
N + F + + D D
Sbjct: 239 NEI---GFEVQRLSVTDLD 254
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 152/341 (44%), Gaps = 36/341 (10%)
Query: 2 NGRLEYSIVSGDDEE----IFTINPSNGTLSNL-KHLDRETKSSYNLVVMATDMAKPPQK 56
NG L YSI+ D EE +FTIN G +S + LDRE Y L V ATD+
Sbjct: 149 NGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEG---A 205
Query: 57 RLSSTTQVSIVIRDVNDNAPEFITANETT-IPENSPLNTVVAALKAIDRD-EGQNSY-VE 113
LS + I I D NDNAP F T +PEN + V L D D G ++
Sbjct: 206 GLSVEGKAIIQITDANDNAPIFDPKTYTALVPENE-IGFEVQRLSVTDLDMPGTPAWQAV 264
Query: 114 YSIINSEATPFSLG----PVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFI 169
Y I +E F++ G+L A+ LD E++ Y L+I ++ S T
Sbjct: 265 YKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTAT 324
Query: 170 RLLDENDNN--PIFDSKSYSASVPENISVGATVLQVSATDLDDGINGRVRYTIISGDDNH 227
+ D N P F V E++S G ++ + A D D ++ Y I D
Sbjct: 325 VTVTVEDVNEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSY-FIGNDPAR 383
Query: 228 DLTISEDNGLLRIAKNLN----YERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDI 283
LT+++DNG++ NL+ Y + Y++ + D G + T T+ + V D+
Sbjct: 384 WLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDG----VSVGTGTGTLILHVLDV 439
Query: 284 NDNYPVFLHSP-YLALVNENTLPGPSFRIMTVQAHDADSLP 323
NDN PV SP + ++N P +++T+ DAD P
Sbjct: 440 NDNGPV--PSPRVFTMCDQN----PEPQVLTI--SDADIPP 472
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 81/179 (45%), Gaps = 26/179 (14%)
Query: 215 RVRYTIIS-GDDNHD---LTISEDNGLLRIAKNLNYERKAQYSLTIQA-EDCGGDTEERI 269
+V Y+I G DN I + G + + + L+ E +Y L+ A + G EE +
Sbjct: 39 KVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPM 98
Query: 270 RFDTATVSILVSDINDNYPVFLHSPYLALVNENTLPGPSFRIMTVQAHDA----DSLPFN 325
++I V D NDN P F + V E PG ++M V A D DSL N
Sbjct: 99 E-----ITINVIDQNDNRPKFTQDVFRGSVREGVQPG--TQVMAVSATDEDDNIDSL--N 149
Query: 326 GLVRYFLKDXXXXXXXXXXXXXXXDLFRVNSTTGDIYLLKS-LDREKQAEYLLTLQAMD 383
G++ Y + +LF +N TG I L+ + LDREK EY LT+QA D
Sbjct: 150 GVLSYSI-------LKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATD 201
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium
pdb|1EDH|B Chain B, E-Cadherin Domains 1 And 2 In Complex With Calcium
Length = 226
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 83/168 (49%), Gaps = 12/168 (7%)
Query: 131 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 190
G L+V Q LDRE + Y L A + + I + D+NDN P F + + SV
Sbjct: 60 GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 119
Query: 191 PENISVGATVLQVSATDLDDGI---NGRVRYTIISGD----DNHDLTISEDNGLLRI-AK 242
E G +V++VSATD DD + N + YTI+S D + T++ D G++ +
Sbjct: 120 AEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTS 179
Query: 243 NLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVF 290
L+ E Y+L +QA D G+ TA I V DINDN PVF
Sbjct: 180 GLDRESYPTYTLVVQAADLQGEGLST----TAKAVITVKDINDNAPVF 223
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 69/158 (43%), Gaps = 16/158 (10%)
Query: 229 LTISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYP 288
I + G L++ + L+ E A+Y L A G+ E D + I V+D NDN P
Sbjct: 53 FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVE----DPMEIVITVTDQNDNRP 108
Query: 289 VFLHSPYLALVNENTLPGPSFRIMTVQAHDADS--LPFNGLVRYFLKDXXXXXXXXXXXX 346
F + V E +PG S +M V A DAD +N + Y +
Sbjct: 109 EFTQEVFEGSVAEGAVPGTS--VMKVSATDADDDVNTYNAAIAYTI-------VSQDPEL 159
Query: 347 XXXDLFRVNSTTGDIYLLKS-LDREKQAEYLLTLQAMD 383
++F VN TG I +L S LDRE Y L +QA D
Sbjct: 160 PHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 197
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 80/176 (45%), Gaps = 13/176 (7%)
Query: 17 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 76
+F I G L + LDRE + Y L A + + ++ I + D NDN P
Sbjct: 52 VFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNG---EAVEDPMEIVITVTDQNDNRP 108
Query: 77 EFIT-ANETTIPENSPLNTVVAALKAIDRDEGQNSY---VEYSIINSEA-----TPFSLG 127
EF E ++ E + T V + A D D+ N+Y + Y+I++ + F++
Sbjct: 109 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 168
Query: 128 PVDGLLRV-AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFD 182
G++ V LDRE YTL ++A D S+ K I + D NDN P+F+
Sbjct: 169 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFN 224
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|B Chain B, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|C Chain C, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|D Chain D, Crystal Structure Of Cadherin-6 Ec12 W4a
Length = 207
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 83/139 (59%), Gaps = 9/139 (6%)
Query: 131 GLLRVAQKLDREIKSNYTLEIKAKDR--GEPSKSSRTKFFIRLLDENDNNPIFDSKSYSA 188
G ++ ++LDRE K Y L +A +R G P + ++F I++ D NDN PIF Y+A
Sbjct: 55 GDIQATKRLDREEKPVYILRAQAVNRRTGRPVEP-ESEFIIKIHDINDNEPIFTKDVYTA 113
Query: 189 SVPENISVGATVLQVSATDLDD---GINGRVRYTIISGDDNHDLTISEDNGLLRIA-KNL 244
+VPE VG V+QV+ATD DD G + +V Y+I+ G ++ + G+++ A N+
Sbjct: 114 TVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQPY--FSVESETGIIKTALLNM 171
Query: 245 NYERKAQYSLTIQAEDCGG 263
+ E + QY + IQA+D GG
Sbjct: 172 DRENREQYQVVIQAKDMGG 190
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 86/162 (53%), Gaps = 10/162 (6%)
Query: 2 NGRLEYSIVSGDDE-EIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSS 60
+G L+Y I+SGD ++F IN + G + K LDRE K Y L A + + + +
Sbjct: 32 DGSLKY-ILSGDGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAVN--RRTGRPVEP 88
Query: 61 TTQVSIVIRDVNDNAPEFITANET-TIPENSPLNTVVAALKAIDRDE---GQNSYVEYSI 116
++ I I D+NDN P F T T+PE + + T V + A D D+ G ++ V YSI
Sbjct: 89 ESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSI 148
Query: 117 INSEATPFSLGPVDGLLRVA-QKLDREIKSNYTLEIKAKDRG 157
+ + FS+ G+++ A +DRE + Y + I+AKD G
Sbjct: 149 LQGQPY-FSVESETGIIKTALLNMDRENREQYQVVIQAKDMG 189
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 82/182 (45%), Gaps = 24/182 (13%)
Query: 206 TDLDDGINGRVRYTIISGDDNHDL-TISEDNGLLRIAKNLNYERKAQYSLTIQAED--CG 262
+D D G +G ++Y I+SGD DL I+E+ G ++ K L+ E K Y L QA + G
Sbjct: 26 SDQDRG-DGSLKY-ILSGDGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAVNRRTG 83
Query: 263 GDTEERIRFDTATVSILVSDINDNYPVFLHSPYLALVNENTLPGPSFRIMTVQAHDADSL 322
E F I + DINDN P+F Y A V E G +F ++ V A DAD
Sbjct: 84 RPVEPESEF-----IIKIHDINDNEPIFTKDVYTATVPEMADVG-TF-VVQVTATDADDP 136
Query: 323 PFNGLVRYFLKDXXXXXXXXXXXXXXXDLFRVNSTTGDIY-LLKSLDREKQAEYLLTLQA 381
+ + F V S TG I L ++DRE + +Y + +QA
Sbjct: 137 TYGNSAKVVYS-----------ILQGQPYFSVESETGIIKTALLNMDRENREQYQVVIQA 185
Query: 382 MD 383
D
Sbjct: 186 KD 187
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23
Length = 210
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 86 IPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPF-SLGPVDGLLRVAQKLDREIK 144
I E++P+ + V L A D D N + + + EA+ F ++ P G++ + Q LDRE K
Sbjct: 19 ISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETK 75
Query: 145 SNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVS 204
S +T+E D K I++ D NDN P F ++ YS +PEN VG + V+
Sbjct: 76 SEFTVEFSVSDH---QGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVN 132
Query: 205 ATDLDDGINGRVRYTIISGDDNHDLTISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGD 264
ATD D G G V Y+ + I G++ + + L+YE Y LT+ A D
Sbjct: 133 ATDPDLGAGGSVLYSF--QPPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATD---Q 187
Query: 265 TEERIRFDTATVSILVSDIND 285
+ R A ++I+++D+ D
Sbjct: 188 DKTRPLSTLANLAIIITDMQD 208
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 8/157 (5%)
Query: 1 DNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSS 60
DN L + + + F + P G + + LDRETKS + + +D +
Sbjct: 38 DNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSD------HQGVI 91
Query: 61 TTQVSIVIRDVNDNAPEFITANETT-IPENSPLNTVVAALKAIDRDEGQNSYVEYSIINS 119
T +V+I + DVNDNAP F + IPEN+P+ T + + A D D G V YS
Sbjct: 92 TRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYS-FQP 150
Query: 120 EATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDR 156
+ F++ G++ V Q+LD E+ Y L + A D+
Sbjct: 151 PSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQ 187
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 86/194 (44%), Gaps = 26/194 (13%)
Query: 190 VPENISVGATVLQVSATDLDDGINGRVRYTIISGDDNHDLTISEDNGLLRIAKNLNYERK 249
+ E+ VG++V Q+ A D+D N + + + + + + D G++ + + L+ E K
Sbjct: 19 ISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETK 75
Query: 250 AQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVFLHSPYLALVNENTLPGPSF 309
+++++ D G T V+I V D+NDN P F + PY + ENT G
Sbjct: 76 SEFTVEFSVSDHQGVI-------TRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTP- 127
Query: 310 RIMTVQAHDADSLPFNGLVRYFLKDXXXXXXXXXXXXXXXDLFRVNSTTGDIYLLKSLDR 369
I V A D D L G V Y + F ++S G + +++ LD
Sbjct: 128 -IFIVNATDPD-LGAGGSVLYSFQ-------------PPSPFFAIDSARGIVTVIQELDY 172
Query: 370 EKQAEYLLTLQAMD 383
E Y LT+ A D
Sbjct: 173 EVTQAYQLTVNATD 186
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 17 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVND 73
F I+ + G ++ ++ LD E +Y L V ATD K + LS+ ++I+I D+ D
Sbjct: 154 FFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDK--TRPLSTLANLAIIITDMQD 208
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 101/360 (28%), Positives = 161/360 (44%), Gaps = 46/360 (12%)
Query: 3 GRLEYSIVSGDDEEIFTI---NP-----SNGTLSNLKHLDRET---KSSYNLVVMATDMA 51
G+ + + D+E F I NP +NG + K D E + + + V+ T+M
Sbjct: 25 GKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMG 84
Query: 52 KPPQKRLSSTTQVSIVIRDVNDNAPEFIT---ANETTIPENSPLNTVVAALKAIDRDEGQ 108
+ + +V I+++DVND P FI + + N+P NT V L+A D D
Sbjct: 85 HNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDH 144
Query: 109 NSYVEYSII-NSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKF 167
N + Y I+ + F + G++R ++ Y L +KA+D+ R
Sbjct: 145 N--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRR--- 199
Query: 168 FIRLLDE------NDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGINGRVRYTI- 220
F +E P F SY A +PEN + ++ + A D +RYT+
Sbjct: 200 FQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFAD---REIRYTLK 256
Query: 221 ISGDDNHDLTISEDNGLLRIAKNLNYERKAQ---YSLTIQA-EDCGGDTEERIRFDTAT- 275
G I +G++++AK L++E Q YSL + A ED GG F T+
Sbjct: 257 AQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGG-------FSTSVD 309
Query: 276 VSILVSDINDNYPVFLHSPYLAL-VNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKD 334
++I V+D+NDN P F Y A V+E+ G S I+ V+A D+DS N + Y + D
Sbjct: 310 LTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTS--ILRVKAMDSDSGS-NAEIEYLVSD 366
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 83/159 (52%), Gaps = 14/159 (8%)
Query: 11 SGDDEEIFTINPSNGTLSNLKHLDRE---TKSSYNLVVMATDMAKPPQKRLSSTTQVSIV 67
G F I P++G + K LD E Y+L+V AT+ + S++ ++I
Sbjct: 258 QGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSG----GFSTSVDLTIR 313
Query: 68 IRDVNDNAPEFITANETT--IPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFS 125
+ DVNDNAP+F + + E+ PL T + +KA+D D G N+ +EY + + F+
Sbjct: 314 VTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVSDDH---FA 370
Query: 126 LGPVDGLLRVAQKLDRE-IKSNYTLEIKAKDRGEPSKSS 163
+ +G++ ++LD + + Y + AKD+GEP KS
Sbjct: 371 VDS-NGIIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSG 408
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 2 NGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS-YNLVVMATDMAKPPQKRLSS 60
N +EY +VS D F ++ SNG + N K LD + ++ Y +V A D +PP+ +++
Sbjct: 357 NAEIEY-LVSDDH---FAVD-SNGIIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVAT 411
>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 99/199 (49%), Gaps = 12/199 (6%)
Query: 86 IPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPF-SLGPVDGLLRVAQKLDREIK 144
I E++P+ + V L A D D N + + + EA+ F ++ P G++ + Q LDRE K
Sbjct: 20 ISEDTPVGSSVTQLLARDMD---NDPLVFGVPGEEASRFFAVEPDTGVVWLRQPLDRETK 76
Query: 145 SNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVS 204
S +T+E D K I++ D NDN P F ++ YS +PEN VG + V+
Sbjct: 77 SEFTVEFSVSDH---QGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVN 133
Query: 205 ATDLDDGINGRVRYTIISGDDNHDLTISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGD 264
ATD D G G V Y+ + I G++ + + L+YE Y LT+ A D
Sbjct: 134 ATDPDLGAGGSVLYSF--QPPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATD---Q 188
Query: 265 TEERIRFDTATVSILVSDI 283
+ R A ++I+++D+
Sbjct: 189 DKTRPLSTLANLAIIITDL 207
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 8/157 (5%)
Query: 1 DNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSS 60
DN L + + + F + P G + + LDRETKS + + +D +
Sbjct: 39 DNDPLVFGVPGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSD------HQGVI 92
Query: 61 TTQVSIVIRDVNDNAPEFITANETT-IPENSPLNTVVAALKAIDRDEGQNSYVEYSIINS 119
T +V+I + DVNDNAP F + IPEN+P+ T + + A D D G V YS
Sbjct: 93 TRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYS-FQP 151
Query: 120 EATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDR 156
+ F++ G++ V Q+LD E+ Y L + A D+
Sbjct: 152 PSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQ 188
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 26/192 (13%)
Query: 192 ENISVGATVLQVSATDLDDGINGRVRYTIISGDDNHDLTISEDNGLLRIAKNLNYERKAQ 251
E+ VG++V Q+ A D+D N + + + + + + D G++ + + L+ E K++
Sbjct: 22 EDTPVGSSVTQLLARDMD---NDPLVFGVPGEEASRFFAVEPDTGVVWLRQPLDRETKSE 78
Query: 252 YSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVFLHSPYLALVNENTLPGPSFRI 311
+++ D G T V+I V D+NDN P F + PY + ENT G I
Sbjct: 79 FTVEFSVSDHQGVI-------TRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTP--I 129
Query: 312 MTVQAHDADSLPFNGLVRYFLKDXXXXXXXXXXXXXXXDLFRVNSTTGDIYLLKSLDREK 371
V A D D L G V Y + F ++S G + +++ LD E
Sbjct: 130 FIVNATDPD-LGAGGSVLYSFQ-------------PPSPFFAIDSARGIVTVIQELDYEV 175
Query: 372 QAEYLLTLQAMD 383
Y LT+ A D
Sbjct: 176 TQAYQLTVNATD 187
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 17 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDV 71
F I+ + G ++ ++ LD E +Y L V ATD K + LS+ ++I+I D+
Sbjct: 155 FFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDK--TRPLSTLANLAIIITDL 207
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment
Length = 215
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 108/211 (51%), Gaps = 18/211 (8%)
Query: 86 IPENS--PLNTVVAALKAIDRDEGQNSYVEYSIINSEA--TP---FSLGPVDGLLRVAQK 138
+PENS P + +++ DRD +N + YS+ A P F + P+ G L V +
Sbjct: 9 LPENSRGPFPQELVRIRS-DRD--KNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 65
Query: 139 LDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGA 198
LDRE+ + + L A D + I ++D NDN P F + ++ SVPE G
Sbjct: 66 LDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGT 125
Query: 199 TVLQVSATDLDD--GINGRVRYTIISGDDN----HDLTISEDNG-LLRIAKNLNYERKAQ 251
V+ V+A D DD +NG +RY I+S + + TI+ + G ++ +A L+ E+ Q
Sbjct: 126 YVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQ 185
Query: 252 YSLTIQAEDCGGDTEERIRFDTATVSILVSD 282
Y+L IQA D G+ + +TAT I V+D
Sbjct: 186 YTLIIQATDMEGNPTYGLS-NTATAVITVTD 215
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 77/155 (49%), Gaps = 15/155 (9%)
Query: 231 ISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVF 290
I+ +G L + K L+ E A++ L A D G+ E + + I V D+NDN P F
Sbjct: 53 INPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVE----NPIDIVINVIDMNDNRPEF 108
Query: 291 LHSPYLALVNENTLPGPSFRIMTVQAHDADSL-PFNGLVRYFLKDXXXXXXXXXXXXXXX 349
LH + V E + PG +MTV A DAD NG++RY +
Sbjct: 109 LHQVWNGSVPEGSKPG--TYVMTVTAIDADDPNALNGMLRYRI-------VSQAPSTPSP 159
Query: 350 DLFRVNSTTGDIYLLKS-LDREKQAEYLLTLQAMD 383
++F +N+ TGDI + + LDREK +Y L +QA D
Sbjct: 160 NMFTINNETGDIITVAAGLDREKVQQYTLIIQATD 194
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 89/173 (51%), Gaps = 17/173 (9%)
Query: 2 NGRLEYSIVS-GDDEE---IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKR 57
N L YS+ G D+ IF INP +G LS K LDRE + ++L A D+ +
Sbjct: 31 NLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDING---NQ 87
Query: 58 LSSTTQVSIVIRDVNDNAPEFI-TANETTIPENSPLNTVVAALKAIDRDE--GQNSYVEY 114
+ + + I + D+NDN PEF+ ++PE S T V + AID D+ N + Y
Sbjct: 88 VENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRY 147
Query: 115 SIIN-SEATP----FSLGPVDG-LLRVAQKLDREIKSNYTLEIKAKD-RGEPS 160
I++ + +TP F++ G ++ VA LDRE YTL I+A D G P+
Sbjct: 148 RIVSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPT 200
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 2 NGRLEYSIVSG----DDEEIFTINPSNGTLSNLKH-LDRETKSSYNLVVMATDMAKPPQK 56
NG L Y IVS +FTIN G + + LDRE Y L++ ATDM P
Sbjct: 142 NGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTY 201
Query: 57 RLSSTTQVSIVIRD 70
LS+T I + D
Sbjct: 202 GLSNTATAVITVTD 215
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2
pdb|2WHV|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 (all Cation
Binding Sites Occupied By Calcium)
pdb|4APX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AXW|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 214
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 99/199 (49%), Gaps = 12/199 (6%)
Query: 86 IPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPF-SLGPVDGLLRVAQKLDREIK 144
I E++P+ + V L A D D N + + + EA+ F ++ P G++ + Q LDRE K
Sbjct: 20 ISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETK 76
Query: 145 SNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVS 204
S +T+E D K I++ D NDN P F ++ YS +PEN VG + V+
Sbjct: 77 SEFTVEFSVSDH---QGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVN 133
Query: 205 ATDLDDGINGRVRYTIISGDDNHDLTISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGD 264
ATD D G G V Y+ + I G++ + + L+YE Y LT+ A D
Sbjct: 134 ATDPDLGAGGSVLYSF--QPPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATD---Q 188
Query: 265 TEERIRFDTATVSILVSDI 283
+ R A ++I+++D+
Sbjct: 189 DKTRPLSTLANLAIIITDL 207
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 8/157 (5%)
Query: 1 DNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSS 60
DN L + + + F + P G + + LDRETKS + + +D +
Sbjct: 39 DNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSD------HQGVI 92
Query: 61 TTQVSIVIRDVNDNAPEFITANETT-IPENSPLNTVVAALKAIDRDEGQNSYVEYSIINS 119
T +V+I + DVNDNAP F + IPEN+P+ T + + A D D G V YS
Sbjct: 93 TRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYS-FQP 151
Query: 120 EATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDR 156
+ F++ G++ V Q+LD E+ Y L + A D+
Sbjct: 152 PSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQ 188
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 86/194 (44%), Gaps = 26/194 (13%)
Query: 190 VPENISVGATVLQVSATDLDDGINGRVRYTIISGDDNHDLTISEDNGLLRIAKNLNYERK 249
+ E+ VG++V Q+ A D+D N + + + + + + D G++ + + L+ E K
Sbjct: 20 ISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETK 76
Query: 250 AQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVFLHSPYLALVNENTLPGPSF 309
+++++ D G T V+I V D+NDN P F + PY + ENT G
Sbjct: 77 SEFTVEFSVSDHQGVI-------TRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTP- 128
Query: 310 RIMTVQAHDADSLPFNGLVRYFLKDXXXXXXXXXXXXXXXDLFRVNSTTGDIYLLKSLDR 369
I V A D D L G V Y + F ++S G + +++ LD
Sbjct: 129 -IFIVNATDPD-LGAGGSVLYSFQ-------------PPSPFFAIDSARGIVTVIQELDY 173
Query: 370 EKQAEYLLTLQAMD 383
E Y LT+ A D
Sbjct: 174 EVTQAYQLTVNATD 187
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 17 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDV 71
F I+ + G ++ ++ LD E +Y L V ATD K + LS+ ++I+I D+
Sbjct: 155 FFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDK--TRPLSTLANLAIIITDL 207
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12
Length = 215
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 108/211 (51%), Gaps = 18/211 (8%)
Query: 86 IPENS--PLNTVVAALKAIDRDEGQNSYVEYSIINSEA--TP---FSLGPVDGLLRVAQK 138
+PENS P + +++ DRD +N + YS+ A P F + P+ G L V +
Sbjct: 9 LPENSRGPFPQELVRIRS-DRD--KNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 65
Query: 139 LDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGA 198
LDRE+ + + L A D + I ++D NDN P F + ++ SVPE G
Sbjct: 66 LDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGT 125
Query: 199 TVLQVSATDLDD--GINGRVRYTIISGDDN----HDLTISEDNG-LLRIAKNLNYERKAQ 251
V+ V+A D DD +NG +RY I+S + + TI+ + G ++ +A L+ E+ Q
Sbjct: 126 YVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQ 185
Query: 252 YSLTIQAEDCGGDTEERIRFDTATVSILVSD 282
Y+L IQA D G+ + +TAT I V+D
Sbjct: 186 YTLIIQATDMEGNPTYGLS-NTATAVITVTD 215
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 77/155 (49%), Gaps = 15/155 (9%)
Query: 231 ISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVF 290
I+ +G L + K L+ E A++ L A D G+ E + + I V D+NDN P F
Sbjct: 53 INPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVE----NPIDIVINVIDMNDNRPEF 108
Query: 291 LHSPYLALVNENTLPGPSFRIMTVQAHDADSL-PFNGLVRYFLKDXXXXXXXXXXXXXXX 349
LH + V E + PG +MTV A DAD NG++RY +
Sbjct: 109 LHQVWNGSVPEGSKPG--TYVMTVTAIDADDPNALNGMLRYRI-------LSQAPSTPSP 159
Query: 350 DLFRVNSTTGDIYLLKS-LDREKQAEYLLTLQAMD 383
++F +N+ TGDI + + LDREK +Y L +QA D
Sbjct: 160 NMFTINNETGDIITVAAGLDREKVQQYTLIIQATD 194
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 89/173 (51%), Gaps = 17/173 (9%)
Query: 2 NGRLEYSIVS-GDDEE---IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKR 57
N L YS+ G D+ IF INP +G LS K LDRE + ++L A D+ +
Sbjct: 31 NLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDING---NQ 87
Query: 58 LSSTTQVSIVIRDVNDNAPEFI-TANETTIPENSPLNTVVAALKAIDRDE--GQNSYVEY 114
+ + + I + D+NDN PEF+ ++PE S T V + AID D+ N + Y
Sbjct: 88 VENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRY 147
Query: 115 SIIN-SEATP----FSLGPVDG-LLRVAQKLDREIKSNYTLEIKAKD-RGEPS 160
I++ + +TP F++ G ++ VA LDRE YTL I+A D G P+
Sbjct: 148 RILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPT 200
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 2 NGRLEYSIVSG----DDEEIFTINPSNGTLSNLKH-LDRETKSSYNLVVMATDMAKPPQK 56
NG L Y I+S +FTIN G + + LDRE Y L++ ATDM P
Sbjct: 142 NGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTY 201
Query: 57 RLSSTTQVSIVIRD 70
LS+T I + D
Sbjct: 202 GLSNTATAVITVTD 215
>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2
Length = 215
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 106/199 (53%), Gaps = 26/199 (13%)
Query: 77 EFITANETTIPENSPLNTVVAALKA-IDRDEGQNSYVEYSIINSEA--TPFSLGPVDGLL 133
+F E T P+ P+ +V L + ID +G Y I++ E T F + G +
Sbjct: 7 QFFVIEEYTGPD--PV--LVGRLHSDIDSGDGNIKY----ILSGEGAGTIFVIDDKSGNI 58
Query: 134 RVAQKLDREIKSNYTLEIKAKDRG-----EPSKSSRTKFFIRLLDENDNNPIFDSKSYSA 188
+ LDRE ++ YTL +A DR EP ++F +++ D NDN P F + Y A
Sbjct: 59 HATKTLDREERAQYTLMAQAVDRDTNRPLEPP----SEFIVKVQDINDNPPEFLHEIYHA 114
Query: 189 SVPENISVGATVLQVSATDLDD---GINGRVRYTIISGDDNHDLTISEDNGLLRIA-KNL 244
+VPE +VG +V+QV+A+D DD G + ++ Y+I+ G ++ G++R A N+
Sbjct: 115 NVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQPY--FSVEAQTGIIRTALPNM 172
Query: 245 NYERKAQYSLTIQAEDCGG 263
+ E K +Y + IQA+D GG
Sbjct: 173 DREAKEEYHVVIQAKDMGG 191
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 96/182 (52%), Gaps = 14/182 (7%)
Query: 2 NGRLEYSIVSGDDE-EIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSS 60
+G ++Y I+SG+ IF I+ +G + K LDRE ++ Y L+ A D + + L
Sbjct: 33 DGNIKY-ILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVD--RDTNRPLEP 89
Query: 61 TTQVSIVIRDVNDNAPEFITA-NETTIPENSPLNTVVAALKAIDRDE---GQNSYVEYSI 116
++ + ++D+NDN PEF+ +PE S + T V + A D D+ G ++ + YSI
Sbjct: 90 PSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSI 149
Query: 117 INSEATP-FSLGPVDGLLRVA-QKLDREIKSNYTLEIKAKDRGE--PSKSSRTKFFIRLL 172
+ E P FS+ G++R A +DRE K Y + I+AKD G S TK I L
Sbjct: 150 L--EGQPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLT 207
Query: 173 DE 174
D+
Sbjct: 208 DD 209
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 90/183 (49%), Gaps = 26/183 (14%)
Query: 206 TDLDDGINGRVRYTIISGDDNHDLTISED-NGLLRIAKNLNYERKAQYSLTIQAEDCGGD 264
+D+D G +G ++Y I+SG+ + + +D +G + K L+ E +AQY+L QA D D
Sbjct: 27 SDIDSG-DGNIKY-ILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDR--D 82
Query: 265 TEERIRFDTATVSILVSDINDNYPVFLHSPYLALVNENTLPGPSFRIMTVQAHDADSLPF 324
T + + + + V DINDN P FLH Y A V E + G S ++ V A DAD +
Sbjct: 83 TNRPLEPPSEFI-VKVQDINDNPPEFLHEIYHANVPERSNVGTS--VIQVTASDADDPTY 139
Query: 325 NG---LVRYFLKDXXXXXXXXXXXXXXXDLFRVNSTTGDIY-LLKSLDREKQAEYLLTLQ 380
LV L+ F V + TG I L ++DRE + EY + +Q
Sbjct: 140 GNSAKLVYSILEGQP--------------YFSVEAQTGIIRTALPNMDREAKEEYHVVIQ 185
Query: 381 AMD 383
A D
Sbjct: 186 AKD 188
>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|2WD0|C Chain C, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|4AQA|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 98/199 (49%), Gaps = 12/199 (6%)
Query: 86 IPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPF-SLGPVDGLLRVAQKLDREIK 144
I E++P+ + V L A D D N + + + EA+ F ++ P G++ + Q LDRE K
Sbjct: 20 ISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETK 76
Query: 145 SNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVS 204
S +T+E D K I++ NDN P F ++ YS +PEN VG + V+
Sbjct: 77 SEFTVEFSVSDH---QGVITRKVNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTPIFIVN 133
Query: 205 ATDLDDGINGRVRYTIISGDDNHDLTISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGD 264
ATD D G G V Y+ + I G++ + + L+YE Y LT+ A D
Sbjct: 134 ATDPDLGAGGSVLYSF--QPPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATD---Q 188
Query: 265 TEERIRFDTATVSILVSDI 283
+ R A ++I+++D+
Sbjct: 189 DKTRPLSTLANLAIIITDL 207
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 75/157 (47%), Gaps = 8/157 (5%)
Query: 1 DNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSS 60
DN L + + + F + P G + + LDRETKS + + +D +
Sbjct: 39 DNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSD------HQGVI 92
Query: 61 TTQVSIVIRDVNDNAPEFITANETT-IPENSPLNTVVAALKAIDRDEGQNSYVEYSIINS 119
T +V+I + VNDNAP F + IPEN+P+ T + + A D D G V YS
Sbjct: 93 TRKVNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYS-FQP 151
Query: 120 EATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDR 156
+ F++ G++ V Q+LD E+ Y L + A D+
Sbjct: 152 PSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQ 188
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 26/194 (13%)
Query: 190 VPENISVGATVLQVSATDLDDGINGRVRYTIISGDDNHDLTISEDNGLLRIAKNLNYERK 249
+ E+ VG++V Q+ A D+D N + + + + + + D G++ + + L+ E K
Sbjct: 20 ISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETK 76
Query: 250 AQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVFLHSPYLALVNENTLPGPSF 309
+++++ D G T V+I V +NDN P F + PY + ENT G
Sbjct: 77 SEFTVEFSVSDHQGVI-------TRKVNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTP- 128
Query: 310 RIMTVQAHDADSLPFNGLVRYFLKDXXXXXXXXXXXXXXXDLFRVNSTTGDIYLLKSLDR 369
I V A D D L G V Y + F ++S G + +++ LD
Sbjct: 129 -IFIVNATDPD-LGAGGSVLYSFQ-------------PPSPFFAIDSARGIVTVIQELDY 173
Query: 370 EKQAEYLLTLQAMD 383
E Y LT+ A D
Sbjct: 174 EVTQAYQLTVNATD 187
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 17 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDV 71
F I+ + G ++ ++ LD E +Y L V ATD K + LS+ ++I+I D+
Sbjct: 155 FFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDK--TRPLSTLANLAIIITDL 207
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain
pdb|1FF5|B Chain B, Structure Of E-Cadherin Double Domain
Length = 219
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 80/164 (48%), Gaps = 12/164 (7%)
Query: 131 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 190
G L+V Q LDRE + Y L A + + I + D+NDN P F + + SV
Sbjct: 59 GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 118
Query: 191 PENISVGATVLQVSATDLDDGI---NGRVRYTIISGD----DNHDLTISEDNGLLRI-AK 242
E G +V++VSATD DD + N + YTI+S D + T++ D G++ +
Sbjct: 119 AEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTS 178
Query: 243 NLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDN 286
L+ E Y+L +QA D G+ TA I V DINDN
Sbjct: 179 GLDRESYPTYTLVVQAADLQGEGLST----TAKAVITVKDINDN 218
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 69/156 (44%), Gaps = 16/156 (10%)
Query: 231 ISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVF 290
I + G L++ + L+ E A+Y L A G+ E D + I V+D NDN P F
Sbjct: 54 IERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVE----DPMEIVITVTDQNDNRPEF 109
Query: 291 LHSPYLALVNENTLPGPSFRIMTVQAHDADS--LPFNGLVRYFLKDXXXXXXXXXXXXXX 348
+ V E +PG S +M V A DAD +N + Y +
Sbjct: 110 TQEVFEGSVAEGAVPGTS--VMKVSATDADDDVNTYNAAIAYTI-------VSQDPELPH 160
Query: 349 XDLFRVNSTTGDIYLLKS-LDREKQAEYLLTLQAMD 383
++F VN TG I +L S LDRE Y L +QA D
Sbjct: 161 KNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 196
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 13/171 (7%)
Query: 17 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 76
+F I G L + LDRE + Y ++ + + + ++ I + D NDN P
Sbjct: 51 VFIIERETGWLKVTQPLDREAIAKY---ILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 107
Query: 77 EFIT-ANETTIPENSPLNTVVAALKAIDRDEGQNSY---VEYSIINSEA-----TPFSLG 127
EF E ++ E + T V + A D D+ N+Y + Y+I++ + F++
Sbjct: 108 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 167
Query: 128 PVDGLLRV-AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDN 177
G++ V LDRE YTL ++A D S+ K I + D NDN
Sbjct: 168 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDN 218
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 8/79 (10%)
Query: 2 NGRLEYSIVSGDDE----EIFTINPSNGTLSNLKH-LDRETKSSYNLVVMATDMAKPPQK 56
N + Y+IVS D E +FT+N G +S L LDRE+ +Y LVV A D+ +
Sbjct: 144 NAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQG---E 200
Query: 57 RLSSTTQVSIVIRDVNDNA 75
LS+T + I ++D+NDNA
Sbjct: 201 GLSTTAKAVITVKDINDNA 219
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
pdb|3PPE|B Chain B, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
Length = 203
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 95/174 (54%), Gaps = 13/174 (7%)
Query: 116 IINSEA--TPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDR-GEPSKSSRTKFFIRLL 172
II E+ T F + DG + ++LDRE K+ Y L DR S +KF I++
Sbjct: 36 IIEGESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVS 95
Query: 173 DENDNNPIFDSKSYSASVPENISVGATVLQVSATDLDD---GINGRVRYTIISGDDNHDL 229
D NDN PIF K ++ SVPE +G +V +V+A D DD + V Y II G N
Sbjct: 96 DINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKG--NEYF 153
Query: 230 TISEDNGLLRIAK-NLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSD 282
T+ +D+G++ A+ +L+ E ++ Y + ++A+D G T E TATV I ++D
Sbjct: 154 TV-DDSGVIFTARADLDRESQSAYEIIVKAKDALGLTGES---STATVIIRLTD 203
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 8/162 (4%)
Query: 17 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 76
IF + +G + + LDRE K+ Y L D + + L ++ I + D+NDNAP
Sbjct: 45 IFKVQGYDGDIYAFERLDREKKAEYELTAHIID--RRNNRSLEPPSKFIIKVSDINDNAP 102
Query: 77 EFITA-NETTIPENSPLNTVVAALKAIDRDE---GQNSYVEYSIINSEATPFSLGPVDGL 132
F+ ++PE S L T V + A D D+ ++ V Y II F++ +
Sbjct: 103 IFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNEY-FTVDDSGVI 161
Query: 133 LRVAQKLDREIKSNYTLEIKAKDR-GEPSKSSRTKFFIRLLD 173
LDRE +S Y + +KAKD G +SS IRL D
Sbjct: 162 FTARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 351 LFRVNSTTGDIYLLKSLDREKQAEYLLTLQAMD 383
+F+V GDIY + LDREK+AEY LT +D
Sbjct: 45 IFKVQGYDGDIYAFERLDREKKAEYELTAHIID 77
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 18/144 (12%)
Query: 242 KNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVFLHSPYLALVNE 301
+ L+ E+KA+Y LT D + R + I VSDINDN P+F+ + V E
Sbjct: 59 ERLDREKKAEYELTAHIIDRRNN---RSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPE 115
Query: 302 NTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDXXXXXXXXXXXXXXXDLFRVNSTTGDI 361
+ G S +T + D ++ + V Y + + F V+ +G I
Sbjct: 116 MSRLGTSVTKVTAEDADDPTVAGHATVTYQI-------------IKGNEYFTVDD-SGVI 161
Query: 362 YLLKS-LDREKQAEYLLTLQAMDS 384
+ ++ LDRE Q+ Y + ++A D+
Sbjct: 162 FTARADLDRESQSAYEIIVKAKDA 185
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 7 YSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATD 49
Y I+ G+ E FT++ S + LDRE++S+Y ++V A D
Sbjct: 144 YQIIKGN--EYFTVDDSGVIFTARADLDRESQSAYEIIVKAKD 184
>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a
pdb|3LNI|B Chain B, Crystal Structure Of E-Cadherin Ec12 E89a
Length = 213
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 8/142 (5%)
Query: 131 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 190
G L+V Q LDRE + Y L A + + + I + D+NDN P F + + SV
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHAVSSNGEAVADPMEIVITVTDQNDNRPEFTQEVFEGSV 117
Query: 191 PENISVGATVLQVSATDLDDGI---NGRVRYTIISGD----DNHDLTISEDNGLLRI-AK 242
E G +V++VSATD DD + N + YTI+S D + T++ D G++ +
Sbjct: 118 AEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTS 177
Query: 243 NLNYERKAQYSLTIQAEDCGGD 264
L+ E Y+L +QA D G+
Sbjct: 178 GLDRESYPTYTLVVQAADLQGE 199
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 68/156 (43%), Gaps = 16/156 (10%)
Query: 231 ISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVF 290
I + G L++ + L+ E A+Y L A G+ D + I V+D NDN P F
Sbjct: 53 IERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVA----DPMEIVITVTDQNDNRPEF 108
Query: 291 LHSPYLALVNENTLPGPSFRIMTVQAHDADS--LPFNGLVRYFLKDXXXXXXXXXXXXXX 348
+ V E +PG S +M V A DAD +N + Y +
Sbjct: 109 TQEVFEGSVAEGAVPGTS--VMKVSATDADDDVNTYNAAIAYTI-------VSQDPELPH 159
Query: 349 XDLFRVNSTTGDIYLLKS-LDREKQAEYLLTLQAMD 383
++F VN TG I +L S LDRE Y L +QA D
Sbjct: 160 KNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 195
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 13/167 (7%)
Query: 17 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 76
+F I G L + LDRE + Y L A + ++ ++ I + D NDN P
Sbjct: 50 VFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNG---EAVADPMEIVITVTDQNDNRP 106
Query: 77 EFIT-ANETTIPENSPLNTVVAALKAIDRDEGQNSY---VEYSIINSEA-----TPFSLG 127
EF E ++ E + T V + A D D+ N+Y + Y+I++ + F++
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 128 PVDGLLRV-AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 173
G++ V LDRE YTL ++A D S+ K I + D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 2 NGRLEYSIVSGDDE----EIFTINPSNGTLSNLKH-LDRETKSSYNLVVMATDMAKPPQK 56
N + Y+IVS D E +FT+N G +S L LDRE+ +Y LVV A D+ +
Sbjct: 143 NAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQG---E 199
Query: 57 RLSSTTQVSIVIRD 70
LS+T + I ++D
Sbjct: 200 GLSTTAKAVITVKD 213
>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I
pdb|3UBG|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
pdb|3UBG|B Chain B, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
Length = 316
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 137/311 (44%), Gaps = 42/311 (13%)
Query: 3 GRLEYSIVSGDDEEIFTI---NP-----SNGTLSNLKHLDRET---KSSYNLVVMATDMA 51
G+ + + D+E F I NP +NG + K D E + + + V+ T+M
Sbjct: 20 GKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMG 79
Query: 52 KPPQKRLSSTTQVSIVIRDVNDNAPEFIT---ANETTIPENSPLNTVVAALKAIDRDEGQ 108
+ + +V I+++DVND P FI + + N+P NT V L+A D D
Sbjct: 80 HNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDH 139
Query: 109 NSYVEYSII-NSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKF 167
N + Y I+ + F + G++R ++ Y L +KA+D+ R
Sbjct: 140 N--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRR--- 194
Query: 168 FIRLLDE------NDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGINGRVRYTI- 220
F +E P F SY A +PEN + ++ + A D +RYT+
Sbjct: 195 FQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFAD---REIRYTLK 251
Query: 221 ISGDDNHDLTISEDNGLLRIAKNLNYERKAQ---YSLTIQA-EDCGGDTEERIRFDTAT- 275
G I +G++++AK L++E Q YSL + A ED GG F T+
Sbjct: 252 AQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGG-------FSTSVD 304
Query: 276 VSILVSDINDN 286
++I V+D+NDN
Sbjct: 305 LTIRVTDVNDN 315
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 22/119 (18%)
Query: 224 DDNHDLTISEDNGLLRIAKNLNYERKAQYS-------LTIQAEDCGGDTEERIRF-DTAT 275
DDN +T+ E NG +R+ K +YE +T + G I++ D
Sbjct: 39 DDNPWVTV-ETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAG------IKYTDNQR 91
Query: 276 VSILVSDINDNYPVFLHS--PYLALVNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFL 332
V ILV D+ND P F++ P A+V N P + T+QA D D+ + + YF+
Sbjct: 92 VIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTP--VFTLQARDPDT---DHNIHYFI 145
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 11 SGDDEEIFTINPSNGTLSNLKHLDRE---TKSSYNLVVMATDMAKPPQKRLSSTTQVSIV 67
G F I P++G + K LD E Y+L+V AT+ + S++ ++I
Sbjct: 253 QGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSG----GFSTSVDLTIR 308
Query: 68 IRDVNDNA 75
+ DVNDNA
Sbjct: 309 VTDVNDNA 316
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant
pdb|3Q2L|B Chain B, Mouse E-Cadherin Ec1-2 V81d Mutant
Length = 213
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 8/142 (5%)
Query: 131 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 190
G L+V Q LDRE + Y L A + + I + D+NDN P F + + SV
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHADSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 117
Query: 191 PENISVGATVLQVSATDLDDGI---NGRVRYTIISGD----DNHDLTISEDNGLLRI-AK 242
E G +V++VSATD DD + N + YTI+S D + T++ D G++ +
Sbjct: 118 AEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTS 177
Query: 243 NLNYERKAQYSLTIQAEDCGGD 264
L+ E Y+L +QA D G+
Sbjct: 178 GLDRESYPTYTLVVQAADLQGE 199
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 70/156 (44%), Gaps = 16/156 (10%)
Query: 231 ISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVF 290
I + G L++ + L+ E A+Y L A+ G+ E D + I V+D NDN P F
Sbjct: 53 IERETGWLKVTQPLDREAIAKYILYSHADSSNGEAVE----DPMEIVITVTDQNDNRPEF 108
Query: 291 LHSPYLALVNENTLPGPSFRIMTVQAHDADS--LPFNGLVRYFLKDXXXXXXXXXXXXXX 348
+ V E +PG S +M V A DAD +N + Y +
Sbjct: 109 TQEVFEGSVAEGAVPGTS--VMKVSATDADDDVNTYNAAIAYTI-------VSQDPELPH 159
Query: 349 XDLFRVNSTTGDIYLLKS-LDREKQAEYLLTLQAMD 383
++F VN TG I +L S LDRE Y L +QA D
Sbjct: 160 KNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 195
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 13/167 (7%)
Query: 17 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 76
+F I G L + LDRE + Y L A + + ++ I + D NDN P
Sbjct: 50 VFIIERETGWLKVTQPLDREAIAKYILYSHADSSNG---EAVEDPMEIVITVTDQNDNRP 106
Query: 77 EFIT-ANETTIPENSPLNTVVAALKAIDRDEGQNSY---VEYSIINSEA-----TPFSLG 127
EF E ++ E + T V + A D D+ N+Y + Y+I++ + F++
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 128 PVDGLLRV-AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 173
G++ V LDRE YTL ++A D S+ K I + D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 2 NGRLEYSIVSGDDE----EIFTINPSNGTLSNLKH-LDRETKSSYNLVVMATDMAKPPQK 56
N + Y+IVS D E +FT+N G +S L LDRE+ +Y LVV A D+ +
Sbjct: 143 NAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQG---E 199
Query: 57 RLSSTTQVSIVIRD 70
LS+T + I ++D
Sbjct: 200 GLSTTAKAVITVKD 213
>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e
Length = 213
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 8/142 (5%)
Query: 131 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 190
G L+V Q LDRE + Y L A + + I + D+NDN P F + + SV
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 117
Query: 191 PENISVGATVLQVSATDLDDGI---NGRVRYTIISGD----DNHDLTISEDNGLLRI-AK 242
E G +V++VSATD DD + N + YTI+S D + T++ D G++ +
Sbjct: 118 AEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTS 177
Query: 243 NLNYERKAQYSLTIQAEDCGGD 264
L+ E Y+L +QA D G+
Sbjct: 178 GLDRESYPTYTLVVQAADLQGE 199
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 69/156 (44%), Gaps = 16/156 (10%)
Query: 231 ISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVF 290
I + G L++ + L+ E A+Y L A G+ E D + I V+D NDN P F
Sbjct: 53 IERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVE----DPMEIVITVTDQNDNRPEF 108
Query: 291 LHSPYLALVNENTLPGPSFRIMTVQAHDADS--LPFNGLVRYFLKDXXXXXXXXXXXXXX 348
+ V E +PG S +M V A DAD +N + Y +
Sbjct: 109 TQEVFEGSVAEGAVPGTS--VMKVSATDADDDVNTYNAAIAYTI-------VSQDPELPH 159
Query: 349 XDLFRVNSTTGDIYLLKS-LDREKQAEYLLTLQAMD 383
++F VN TG I +L S LDRE Y L +QA D
Sbjct: 160 KNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 195
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 13/167 (7%)
Query: 17 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 76
+F I G L + LDRE + Y L A + + ++ I + D NDN P
Sbjct: 50 VFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNG---EAVEDPMEIVITVTDQNDNRP 106
Query: 77 EFIT-ANETTIPENSPLNTVVAALKAIDRDEGQNSY---VEYSIINSEA-----TPFSLG 127
EF E ++ E + T V + A D D+ N+Y + Y+I++ + F++
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 128 PVDGLLRV-AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 173
G++ V LDRE YTL ++A D S+ K I + D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 2 NGRLEYSIVSGDDE----EIFTINPSNGTLSNLKH-LDRETKSSYNLVVMATDMAKPPQK 56
N + Y+IVS D E +FT+N G +S L LDRE+ +Y LVV A D+ +
Sbjct: 143 NAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQG---E 199
Query: 57 RLSSTTQVSIVIRD 70
LS+T + I ++D
Sbjct: 200 GLSTTAKAVITVKD 213
>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension
pdb|3LNG|B Chain B, Crystal Structure Of E-Cadherin Ec12 Aa Extension
Length = 215
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 8/142 (5%)
Query: 131 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 190
G L+V Q LDRE + Y L A + + I + D+NDN P F + + SV
Sbjct: 60 GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 119
Query: 191 PENISVGATVLQVSATDLDDGI---NGRVRYTIISGD----DNHDLTISEDNGLLRI-AK 242
E G +V++VSATD DD + N + YTI+S D + T++ D G++ +
Sbjct: 120 AEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTS 179
Query: 243 NLNYERKAQYSLTIQAEDCGGD 264
L+ E Y+L +QA D G+
Sbjct: 180 GLDRESYPTYTLVVQAADLQGE 201
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 69/156 (44%), Gaps = 16/156 (10%)
Query: 231 ISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVF 290
I + G L++ + L+ E A+Y L A G+ E D + I V+D NDN P F
Sbjct: 55 IERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVE----DPMEIVITVTDQNDNRPEF 110
Query: 291 LHSPYLALVNENTLPGPSFRIMTVQAHDADS--LPFNGLVRYFLKDXXXXXXXXXXXXXX 348
+ V E +PG S +M V A DAD +N + Y +
Sbjct: 111 TQEVFEGSVAEGAVPGTS--VMKVSATDADDDVNTYNAAIAYTI-------VSQDPELPH 161
Query: 349 XDLFRVNSTTGDIYLLKS-LDREKQAEYLLTLQAMD 383
++F VN TG I +L S LDRE Y L +QA D
Sbjct: 162 KNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 197
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 13/167 (7%)
Query: 17 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 76
+F I G L + LDRE + Y L A + + ++ I + D NDN P
Sbjct: 52 VFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNG---EAVEDPMEIVITVTDQNDNRP 108
Query: 77 EFIT-ANETTIPENSPLNTVVAALKAIDRDEGQNSY---VEYSIINSEA-----TPFSLG 127
EF E ++ E + T V + A D D+ N+Y + Y+I++ + F++
Sbjct: 109 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 168
Query: 128 PVDGLLRV-AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 173
G++ V LDRE YTL ++A D S+ K I + D
Sbjct: 169 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 215
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 2 NGRLEYSIVSGDDE----EIFTINPSNGTLSNLKH-LDRETKSSYNLVVMATDMAKPPQK 56
N + Y+IVS D E +FT+N G +S L LDRE+ +Y LVV A D+ +
Sbjct: 145 NAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQG---E 201
Query: 57 RLSSTTQVSIVIRD 70
LS+T + I ++D
Sbjct: 202 GLSTTAKAVITVKD 215
>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a
pdb|3LNF|B Chain B, Crystal Structure Of E-Cadherin Ec12 K14ew2a
Length = 213
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 8/142 (5%)
Query: 131 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 190
G L+V Q LDRE + Y L A + + I + D+NDN P F + + SV
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 117
Query: 191 PENISVGATVLQVSATDLDDGI---NGRVRYTIISGD----DNHDLTISEDNGLLRI-AK 242
E G +V++VSATD DD + N + YTI+S D + T++ D G++ +
Sbjct: 118 AEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTS 177
Query: 243 NLNYERKAQYSLTIQAEDCGGD 264
L+ E Y+L +QA D G+
Sbjct: 178 GLDRESYPTYTLVVQAADLQGE 199
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 69/156 (44%), Gaps = 16/156 (10%)
Query: 231 ISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVF 290
I + G L++ + L+ E A+Y L A G+ E D + I V+D NDN P F
Sbjct: 53 IERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVE----DPMEIVITVTDQNDNRPEF 108
Query: 291 LHSPYLALVNENTLPGPSFRIMTVQAHDADS--LPFNGLVRYFLKDXXXXXXXXXXXXXX 348
+ V E +PG S +M V A DAD +N + Y +
Sbjct: 109 TQEVFEGSVAEGAVPGTS--VMKVSATDADDDVNTYNAAIAYTI-------VSQDPELPH 159
Query: 349 XDLFRVNSTTGDIYLLKS-LDREKQAEYLLTLQAMD 383
++F VN TG I +L S LDRE Y L +QA D
Sbjct: 160 KNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 195
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 13/167 (7%)
Query: 17 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 76
+F I G L + LDRE + Y L A + + ++ I + D NDN P
Sbjct: 50 VFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNG---EAVEDPMEIVITVTDQNDNRP 106
Query: 77 EFIT-ANETTIPENSPLNTVVAALKAIDRDEGQNSY---VEYSIINSEA-----TPFSLG 127
EF E ++ E + T V + A D D+ N+Y + Y+I++ + F++
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 128 PVDGLLRV-AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 173
G++ V LDRE YTL ++A D S+ K I + D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 2 NGRLEYSIVSGDDE----EIFTINPSNGTLSNLKH-LDRETKSSYNLVVMATDMAKPPQK 56
N + Y+IVS D E +FT+N G +S L LDRE+ +Y LVV A D+ +
Sbjct: 143 NAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQG---E 199
Query: 57 RLSSTTQVSIVIRD 70
LS+T + I ++D
Sbjct: 200 GLSTTAKAVITVKD 213
>pdb|1Q1P|A Chain A, E-Cadherin Activation
Length = 212
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 8/142 (5%)
Query: 131 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 190
G L+V Q LDRE + Y L A + + I + D+NDN P F + + SV
Sbjct: 57 GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 116
Query: 191 PENISVGATVLQVSATDLDDGI---NGRVRYTIISGD----DNHDLTISEDNGLLRI-AK 242
E G +V++VSATD DD + N + YTI+S D + T++ D G++ +
Sbjct: 117 AEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTS 176
Query: 243 NLNYERKAQYSLTIQAEDCGGD 264
L+ E Y+L +QA D G+
Sbjct: 177 GLDRESYPTYTLVVQAADLQGE 198
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 69/156 (44%), Gaps = 16/156 (10%)
Query: 231 ISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVF 290
I + G L++ + L+ E A+Y L A G+ E D + I V+D NDN P F
Sbjct: 52 IERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVE----DPMEIVITVTDQNDNRPEF 107
Query: 291 LHSPYLALVNENTLPGPSFRIMTVQAHDADS--LPFNGLVRYFLKDXXXXXXXXXXXXXX 348
+ V E +PG S +M V A DAD +N + Y +
Sbjct: 108 TQEVFEGSVAEGAVPGTS--VMKVSATDADDDVNTYNAAIAYTI-------VSQDPELPH 158
Query: 349 XDLFRVNSTTGDIYLLKS-LDREKQAEYLLTLQAMD 383
++F VN TG I +L S LDRE Y L +QA D
Sbjct: 159 KNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 194
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 13/167 (7%)
Query: 17 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 76
+F I G L + LDRE + Y L A + + ++ I + D NDN P
Sbjct: 49 VFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNG---EAVEDPMEIVITVTDQNDNRP 105
Query: 77 EFIT-ANETTIPENSPLNTVVAALKAIDRDEGQNSY---VEYSIINSEA-----TPFSLG 127
EF E ++ E + T V + A D D+ N+Y + Y+I++ + F++
Sbjct: 106 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 165
Query: 128 PVDGLLRV-AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 173
G++ V LDRE YTL ++A D S+ K I + D
Sbjct: 166 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 212
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 2 NGRLEYSIVSGDDE----EIFTINPSNGTLSNLKH-LDRETKSSYNLVVMATDMAKPPQK 56
N + Y+IVS D E +FT+N G +S L LDRE+ +Y LVV A D+ +
Sbjct: 142 NAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQG---E 198
Query: 57 RLSSTTQVSIVIRD 70
LS+T + I ++D
Sbjct: 199 GLSTTAKAVITVKD 212
>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2
Length = 213
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 8/142 (5%)
Query: 131 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 190
G L+V Q LDRE + Y L A + + I + D+NDN P F + + SV
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 117
Query: 191 PENISVGATVLQVSATDLDDGI---NGRVRYTIISGD----DNHDLTISEDNGLLRI-AK 242
E G +V++VSATD DD + N + YTI+S D + T++ D G++ +
Sbjct: 118 AEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTS 177
Query: 243 NLNYERKAQYSLTIQAEDCGGD 264
L+ E Y+L +QA D G+
Sbjct: 178 GLDRESYPTYTLVVQAADLQGE 199
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 69/156 (44%), Gaps = 16/156 (10%)
Query: 231 ISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVF 290
I + G L++ + L+ E A+Y L A G+ E D + I V+D NDN P F
Sbjct: 53 IERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVE----DPMEIVITVTDQNDNRPEF 108
Query: 291 LHSPYLALVNENTLPGPSFRIMTVQAHDADS--LPFNGLVRYFLKDXXXXXXXXXXXXXX 348
+ V E +PG S +M V A DAD +N + Y +
Sbjct: 109 TQEVFEGSVAEGAVPGTS--VMKVSATDADDDVNTYNAAIAYTI-------VSQDPELPH 159
Query: 349 XDLFRVNSTTGDIYLLKS-LDREKQAEYLLTLQAMD 383
++F VN TG I +L S LDRE Y L +QA D
Sbjct: 160 KNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 195
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 13/167 (7%)
Query: 17 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 76
+F I G L + LDRE + Y L A + + ++ I + D NDN P
Sbjct: 50 VFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNG---EAVEDPMEIVITVTDQNDNRP 106
Query: 77 EFIT-ANETTIPENSPLNTVVAALKAIDRDEGQNSY---VEYSIINSEA-----TPFSLG 127
EF E ++ E + T V + A D D+ N+Y + Y+I++ + F++
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 128 PVDGLLRV-AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 173
G++ V LDRE YTL ++A D S+ K I + D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 2 NGRLEYSIVSGDDE----EIFTINPSNGTLSNLKH-LDRETKSSYNLVVMATDMAKPPQK 56
N + Y+IVS D E +FT+N G +S L LDRE+ +Y LVV A D+ +
Sbjct: 143 NAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQG---E 199
Query: 57 RLSSTTQVSIVIRD 70
LS+T + I ++D
Sbjct: 200 GLSTTAKAVITVKD 213
>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a
pdb|3LNH|B Chain B, Crystal Structure Of E-Cadherin Ec12 W2a
Length = 213
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 8/142 (5%)
Query: 131 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 190
G L+V Q LDRE + Y L A + + I + D+NDN P F + + SV
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 117
Query: 191 PENISVGATVLQVSATDLDDGI---NGRVRYTIISGD----DNHDLTISEDNGLLRI-AK 242
E G +V++VSATD DD + N + YTI+S D + T++ D G++ +
Sbjct: 118 AEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTS 177
Query: 243 NLNYERKAQYSLTIQAEDCGGD 264
L+ E Y+L +QA D G+
Sbjct: 178 GLDRESYPTYTLVVQAADLQGE 199
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 69/156 (44%), Gaps = 16/156 (10%)
Query: 231 ISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVF 290
I + G L++ + L+ E A+Y L A G+ E D + I V+D NDN P F
Sbjct: 53 IERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVE----DPMEIVITVTDQNDNRPEF 108
Query: 291 LHSPYLALVNENTLPGPSFRIMTVQAHDADS--LPFNGLVRYFLKDXXXXXXXXXXXXXX 348
+ V E +PG S +M V A DAD +N + Y +
Sbjct: 109 TQEVFEGSVAEGAVPGTS--VMKVSATDADDDVNTYNAAIAYTI-------VSQDPELPH 159
Query: 349 XDLFRVNSTTGDIYLLKS-LDREKQAEYLLTLQAMD 383
++F VN TG I +L S LDRE Y L +QA D
Sbjct: 160 KNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 195
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 13/167 (7%)
Query: 17 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 76
+F I G L + LDRE + Y L A + + ++ I + D NDN P
Sbjct: 50 VFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNG---EAVEDPMEIVITVTDQNDNRP 106
Query: 77 EFIT-ANETTIPENSPLNTVVAALKAIDRDEGQNSY---VEYSIINSEA-----TPFSLG 127
EF E ++ E + T V + A D D+ N+Y + Y+I++ + F++
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 128 PVDGLLRV-AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 173
G++ V LDRE YTL ++A D S+ K I + D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 2 NGRLEYSIVSGDDE----EIFTINPSNGTLSNLKH-LDRETKSSYNLVVMATDMAKPPQK 56
N + Y+IVS D E +FT+N G +S L LDRE+ +Y LVV A D+ +
Sbjct: 143 NAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQG---E 199
Query: 57 RLSSTTQVSIVIRD 70
LS+T + I ++D
Sbjct: 200 GLSTTAKAVITVKD 213
>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
pdb|3QRB|B Chain B, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
Length = 213
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 8/142 (5%)
Query: 131 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 190
G L+V Q LDRE + Y L A + + I + D+NDN P F + + SV
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 117
Query: 191 PENISVGATVLQVSATDLDDGI---NGRVRYTIISGD----DNHDLTISEDNGLLRI-AK 242
E G +V++VSATD DD + N + YTI+S D + T++ D G++ +
Sbjct: 118 AEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTS 177
Query: 243 NLNYERKAQYSLTIQAEDCGGD 264
L+ E Y+L +QA D G+
Sbjct: 178 GLDRESYPTYTLVVQAADLQGE 199
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 69/156 (44%), Gaps = 16/156 (10%)
Query: 231 ISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVF 290
I + G L++ + L+ E A+Y L A G+ E D + I V+D NDN P F
Sbjct: 53 IERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVE----DPMEIVITVTDQNDNRPEF 108
Query: 291 LHSPYLALVNENTLPGPSFRIMTVQAHDADS--LPFNGLVRYFLKDXXXXXXXXXXXXXX 348
+ V E +PG S +M V A DAD +N + Y +
Sbjct: 109 TQEVFEGSVAEGAVPGTS--VMKVSATDADDDVNTYNAAIAYTI-------VSQDPELPH 159
Query: 349 XDLFRVNSTTGDIYLLKS-LDREKQAEYLLTLQAMD 383
++F VN TG I +L S LDRE Y L +QA D
Sbjct: 160 KNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 195
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 13/167 (7%)
Query: 17 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 76
+F I G L + LDRE + Y ++ + + + ++ I + D NDN P
Sbjct: 50 VFIIERETGWLKVTQPLDREAIAKY---ILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 106
Query: 77 EFIT-ANETTIPENSPLNTVVAALKAIDRDEGQNSY---VEYSIINSE-----ATPFSLG 127
EF E ++ E + T V + A D D+ N+Y + Y+I++ + F++
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 128 PVDGLLRV-AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 173
G++ V LDRE YTL ++A D S+ K I + D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 2 NGRLEYSIVSGDDE----EIFTINPSNGTLSNLKH-LDRETKSSYNLVVMATDMAKPPQK 56
N + Y+IVS D E +FT+N G +S L LDRE+ +Y LVV A D+ +
Sbjct: 143 NAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQG---E 199
Query: 57 RLSSTTQVSIVIRD 70
LS+T + I ++D
Sbjct: 200 GLSTTAKAVITVKD 213
>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant
pdb|3Q2N|B Chain B, Mouse E-Cadherin Ec1-2 L175d Mutant
Length = 213
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 8/142 (5%)
Query: 131 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 190
G L+V Q LDRE + Y L A + + I + D+NDN P F + + SV
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 117
Query: 191 PENISVGATVLQVSATDLDDGI---NGRVRYTIISGD----DNHDLTISEDNGLLRI-AK 242
E G +V++VSATD DD + N + YTI+S D + T++ D G++ +
Sbjct: 118 AEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVDTS 177
Query: 243 NLNYERKAQYSLTIQAEDCGGD 264
L+ E Y+L +QA D G+
Sbjct: 178 GLDRESYPTYTLVVQAADLQGE 199
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 68/156 (43%), Gaps = 16/156 (10%)
Query: 231 ISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVF 290
I + G L++ + L+ E A+Y L A G+ E D + I V+D NDN P F
Sbjct: 53 IERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVE----DPMEIVITVTDQNDNRPEF 108
Query: 291 LHSPYLALVNENTLPGPSFRIMTVQAHDADS--LPFNGLVRYFLKDXXXXXXXXXXXXXX 348
+ V E +PG S +M V A DAD +N + Y +
Sbjct: 109 TQEVFEGSVAEGAVPGTS--VMKVSATDADDDVNTYNAAIAYTI-------VSQDPELPH 159
Query: 349 XDLFRVNSTTGDIYLLKS-LDREKQAEYLLTLQAMD 383
++F VN TG I + S LDRE Y L +QA D
Sbjct: 160 KNMFTVNRDTGVISVDTSGLDRESYPTYTLVVQAAD 195
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 13/167 (7%)
Query: 17 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 76
+F I G L + LDRE + Y L A + + ++ I + D NDN P
Sbjct: 50 VFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNG---EAVEDPMEIVITVTDQNDNRP 106
Query: 77 EFIT-ANETTIPENSPLNTVVAALKAIDRDEGQNSY---VEYSIINSEA-----TPFSLG 127
EF E ++ E + T V + A D D+ N+Y + Y+I++ + F++
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 128 PVDGLLRV-AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 173
G++ V LDRE YTL ++A D S+ K I + D
Sbjct: 167 RDTGVISVDTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 2 NGRLEYSIVSGDDE----EIFTINPSNGTLS-NLKHLDRETKSSYNLVVMATDMAKPPQK 56
N + Y+IVS D E +FT+N G +S + LDRE+ +Y LVV A D+ +
Sbjct: 143 NAAIAYTIVSQDPELPHKNMFTVNRDTGVISVDTSGLDRESYPTYTLVVQAADLQG---E 199
Query: 57 RLSSTTQVSIVIRD 70
LS+T + I ++D
Sbjct: 200 GLSTTAKAVITVKD 213
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213)
Length = 213
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 91/190 (47%), Gaps = 16/190 (8%)
Query: 88 ENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEA-TP----FSLGPVDGLLRVAQKLDRE 142
E P + +K+ EG+ V YSI A TP F + G L+V + LDRE
Sbjct: 13 EKGPFPKNLVQIKSNKDKEGK---VFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRE 69
Query: 143 IKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQ 202
+ YTL A + + I + D+NDN P F + + SV E G +V++
Sbjct: 70 RIATYTLFSHAVSSNGNAVEDPMEILITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVME 129
Query: 203 VSATDLDDGI---NGRVRYTIISGD----DNHDLTISEDNGLLRIA-KNLNYERKAQYSL 254
V+ATD DD + N + YTI+S D D + TI+ + G++ + L+ E Y+L
Sbjct: 130 VTATDADDDVNTYNAAIAYTILSQDPELPDKNMFTINRNTGVISVVTTGLDRESFPTYTL 189
Query: 255 TIQAEDCGGD 264
+QA D G+
Sbjct: 190 VVQAADLQGE 199
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 79/177 (44%), Gaps = 20/177 (11%)
Query: 214 GRVRYTIIS-GDDNHDL---TISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERI 269
G+V Y+I G D + I + G L++ + L+ ER A Y+L A G+ E
Sbjct: 32 GKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVE-- 89
Query: 270 RFDTATVSILVSDINDNYPVFLHSPYLALVNENTLPGPSFRIMTVQAHDADS--LPFNGL 327
D + I V+D NDN P F + V E LPG S +M V A DAD +N
Sbjct: 90 --DPMEILITVTDQNDNKPEFTQEVFKGSVMEGALPGTS--VMEVTATDADDDVNTYNAA 145
Query: 328 VRYFLKDXXXXXXXXXXXXXXXDLFRVNSTTGDIYLLKS-LDREKQAEYLLTLQAMD 383
+ Y + ++F +N TG I ++ + LDRE Y L +QA D
Sbjct: 146 IAYTI-------LSQDPELPDKNMFTINRNTGVISVVTTGLDRESFPTYTLVVQAAD 195
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 18/171 (10%)
Query: 3 GRLEYSIVS-GDDEE---IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRL 58
G++ YSI G D +F I G L + LDRE ++Y L A +
Sbjct: 32 GKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNG---NAV 88
Query: 59 SSTTQVSIVIRDVNDNAPEFIT-ANETTIPENSPLNTVVAALKAIDRDEGQNSY---VEY 114
++ I + D NDN PEF + ++ E + T V + A D D+ N+Y + Y
Sbjct: 89 EDPMEILITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVMEVTATDADDDVNTYNAAIAY 148
Query: 115 SIINSEA-----TPFSLGPVDGLLRVAQK-LDREIKSNYTLEIKAKD-RGE 158
+I++ + F++ G++ V LDRE YTL ++A D +GE
Sbjct: 149 TILSQDPELPDKNMFTINRNTGVISVVTTGLDRESFPTYTLVVQAADLQGE 199
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 2 NGRLEYSIVSGD----DEEIFTINPSNGTLSNLK-HLDRETKSSYNLVVMATDM 50
N + Y+I+S D D+ +FTIN + G +S + LDRE+ +Y LVV A D+
Sbjct: 143 NAAIAYTILSQDPELPDKNMFTINRNTGVISVVTTGLDRESFPTYTLVVQAADL 196
>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human
Protocadherin 7
Length = 119
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 175 NDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGINGRVRYTIISGDDN--HDLTIS 232
NDN+P F+ Y A + EN + G +LQ+ A DLD G+NG++ Y + ++ L +
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD 67
Query: 233 EDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYP 288
E +G L + ++ E Q T+ A D G + + D ATV + + D NDN P
Sbjct: 68 ETSGWLSVLHRIDREEVNQLRFTVMARDRG----QPPKTDKATVVLNIKDENDNVP 119
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 72 NDNAPEF-ITANETTIPENSPLNTVVAALKAIDRDEGQNSYVEY---SIINSEATPFSLG 127
NDN+P F + E + ENS T + L+A D D G N +EY + S L
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD 67
Query: 128 PVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNP 179
G L V ++DRE + + A+DRG+P K+ + + + DENDN P
Sbjct: 68 ETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 2 NGRLEYSIVSGDD--EEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLS 59
NG++EY + + + ++ ++G LS L +DRE + VMA D +PP+ +
Sbjct: 46 NGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPK---T 102
Query: 60 STTQVSIVIRDVNDNAP 76
V + I+D NDN P
Sbjct: 103 DKATVVLNIKDENDNVP 119
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 284 NDNYPVFLHSPYLALVNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDXXXXXXXXX 343
NDN P F S Y A + EN+ PG I+ ++A D D + NG + Y
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTP--ILQLRAADLD-VGVNGQIEYVFG---------A 55
Query: 344 XXXXXXDLFRVNSTTGDIYLLKSLDREKQAEYLLTLQAMD 383
L R++ T+G + +L +DRE+ + T+ A D
Sbjct: 56 ATESVRRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARD 95
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
pdb|3K5S|B Chain B, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
Length = 217
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 95/218 (43%), Gaps = 16/218 (7%)
Query: 79 ITANETTIPENS--PLNTVVAALKAIDRDEGQNSYVEYSIINSEATP-FSLGPVDGLLRV 135
I A IPEN P V + + EG + ++ + F + + G + V
Sbjct: 2 ILATPILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSV 61
Query: 136 AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENIS 195
+ LDRE +NY LE++ D + I ++D+NDN P+F Y V E
Sbjct: 62 TRPLDREAIANYQLEVEVTDLSGKIIDGPVRLDISVIDQNDNRPMFKEGPYVGHVMEGSP 121
Query: 196 VGATVLQVSATDLDDGI--NGRVRYTII-----SGDDNHDLTISEDNGLLRIAKNLNYER 248
G TV++++A D DD N +RY I+ N E ++ + + +R
Sbjct: 122 TGTTVMRMTAFDADDPSTDNALLRYNILKQTPTKPSPNMFYIDPEKGDIVTVVSPVLLDR 181
Query: 249 KA----QYSLTIQAEDCGGDTEERIRFDTATVSILVSD 282
+ +Y L I+A+D GG + TAT +IL+ D
Sbjct: 182 ETMETPKYELVIEAKDMGG--HDVGLTGTATATILIDD 217
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 77/167 (46%), Gaps = 16/167 (9%)
Query: 4 RLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQ 63
RL V D + IF IN +G +S + LDRE ++Y L V TD++ K + +
Sbjct: 36 RLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYQLEVEVTDLSG---KIIDGPVR 92
Query: 64 VSIVIRDVNDNAPEFITANETT-IPENSPLNTVVAALKAIDRDEGQ--NSYVEYSIINSE 120
+ I + D NDN P F + E SP T V + A D D+ N+ + Y+I+
Sbjct: 93 LDISVIDQNDNRPMFKEGPYVGHVMEGSPTGTTVMRMTAFDADDPSTDNALLRYNILKQT 152
Query: 121 ATP-----FSLGPVDG-LLRVAQK--LDREI--KSNYTLEIKAKDRG 157
T F + P G ++ V LDRE Y L I+AKD G
Sbjct: 153 PTKPSPNMFYIDPEKGDIVTVVSPVLLDRETMETPKYELVIEAKDMG 199
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 23/161 (14%)
Query: 231 ISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDT-EERIRFDTATVSILVSDINDNYPV 289
I+E +G + + + L+ E A Y L ++ D G + +R D I V D NDN P+
Sbjct: 52 INEISGDVSVTRPLDREAIANYQLEVEVTDLSGKIIDGPVRLD-----ISVIDQNDNRPM 106
Query: 290 FLHSPYLALVNENTLPGPSFRIMTVQAHDADSLPF-NGLVRY-FLKDXXXXXXXXXXXXX 347
F PY+ V E + G + +M + A DAD N L+RY LK
Sbjct: 107 FKEGPYVGHVMEGSPTGTT--VMRMTAFDADDPSTDNALLRYNILK--------QTPTKP 156
Query: 348 XXDLFRVNSTTGDIYLLKS---LDRE--KQAEYLLTLQAMD 383
++F ++ GDI + S LDRE + +Y L ++A D
Sbjct: 157 SPNMFYIDPEKGDIVTVVSPVLLDRETMETPKYELVIEAKD 197
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 351 LFRVNSTTGDIYLLKSLDREKQAEYLLTLQAMD 383
+FR+N +GD+ + + LDRE A Y L ++ D
Sbjct: 49 IFRINEISGDVSVTRPLDREAIANYQLEVEVTD 81
>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human
Protocadherin 9
Length = 114
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 9/113 (7%)
Query: 175 NDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGINGRVRYTI---ISGDDNHDLTI 231
NDN P+F +PEN VG +V+Q+ ATD D G N +RY ++ +
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFAL 67
Query: 232 SEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDIN 284
+ GL+ + ++L+ E A + +T+ A D G T R ATV+I V+D+N
Sbjct: 68 NNTTGLITVQRSLDREETAIHKVTVLASD-GSSTPAR-----ATVTINVTDVN 114
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 9/110 (8%)
Query: 72 NDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATP-----FS 125
NDN P F E IPEN+P+ T V L A D D G N+ + Y I ++ P F+
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRY-IFGAQVAPATKRLFA 66
Query: 126 LGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDEN 175
L GL+ V + LDRE + + + + A D S +R I + D N
Sbjct: 67 LNNTTGLITVQRSLDREETAIHKVTVLASD--GSSTPARATVTINVTDVN 114
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 284 NDNYPVFLHSPYLALVNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDXXXXXXXXX 343
NDN PVF + EN G S ++ + A DAD + N +RY
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTS--VIQLHATDAD-IGSNAEIRYIFG--------AQ 56
Query: 344 XXXXXXDLFRVNSTTGDIYLLKSLDREKQAEYLLTLQAMD 383
LF +N+TTG I + +SLDRE+ A + +T+ A D
Sbjct: 57 VAPATKRLFALNNTTGLITVQRSLDREETAIHKVTVLASD 96
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 15 EEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVN 72
+ +F +N + G ++ + LDRE + + + V+A+D + P + V+I + DVN
Sbjct: 62 KRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPAR-----ATVTINVTDVN 114
>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
pdb|3K5R|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
Length = 218
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 86/190 (45%), Gaps = 19/190 (10%)
Query: 200 VLQVSATDLDDGINGRVRYTIISGDDNHDLTISEDNGLLRIAKNLNYERKAQYSLTIQAE 259
V +V +D +G R+ + D I+E+ G + + + L+ E A Y L ++
Sbjct: 22 VGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETT 81
Query: 260 DCGGDTEERIRFDTATVSILVSDINDNYPVFLHSPYLALVNENTLPGPSFRIMTVQAHDA 319
D G T E + ++V D NDN P+F PY+ V E + G + +M + A DA
Sbjct: 82 DASGKTLE----GPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTT--VMRMTAFDA 135
Query: 320 DSLPF-NGLVRYFLKDXXXXXXXXXXXXXXXDLFRVNSTTGDIYLLKS---LDRE--KQA 373
D N L+RY ++ ++F ++ GDI + S LDRE +
Sbjct: 136 DDPATDNALLRYNIR-------QQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENP 188
Query: 374 EYLLTLQAMD 383
+Y L ++A D
Sbjct: 189 KYELIIEAQD 198
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 78/167 (46%), Gaps = 20/167 (11%)
Query: 4 RLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQ 63
RL V D + F IN + G++S + LDRET ++Y L V TD + K L
Sbjct: 37 RLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASG---KTLEGPVP 93
Query: 64 VSIVIRDVNDNAPEFITANETT-IPENSPLNTVVAALKAIDRDEGQ--NSYVEYSIINSE 120
+ +++ D NDN P F + E SP T V + A D D+ N+ + Y+I +
Sbjct: 94 LEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNI--RQ 151
Query: 121 ATP-------FSLGPVDG-LLRVAQK--LDREIKSN--YTLEIKAKD 155
TP F + P G ++ V LDRE N Y L I+A+D
Sbjct: 152 QTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQD 198
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 5/147 (3%)
Query: 79 ITANETTIPENS--PLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-PFSLGPVDGLLRV 135
I + IPEN P V + DR EG + ++ + F + G + V
Sbjct: 3 IVVSPILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSV 62
Query: 136 AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENIS 195
+ LDRE + Y L ++ D + + ++D+NDN PIF Y V E
Sbjct: 63 TRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSP 122
Query: 196 VGATVLQVSATDLDDGI--NGRVRYTI 220
G TV++++A D DD N +RY I
Sbjct: 123 TGTTVMRMTAFDADDPATDNALLRYNI 149
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 352 FRVNSTTGDIYLLKSLDREKQAEYLLTLQAMDS 384
FR+N TG + + ++LDRE A Y L ++ D+
Sbjct: 51 FRINENTGSVSVTRTLDRETIATYQLYVETTDA 83
>pdb|4APX|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|C Chain C, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|D Chain D, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQA|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
pdb|4AQE|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
pdb|4AXW|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 242
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 58/111 (52%), Gaps = 12/111 (10%)
Query: 169 IRLLDENDNNPIFDSKSYSASVPENISVGATVLQV-----SATDLDDGINGRVRYTI--- 220
I + D NDN+P F +SY A+V E VG T+ ATD+DDG NG++ Y I
Sbjct: 115 IVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQYN 174
Query: 221 ---ISGDDNHDLTISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEER 268
+ +D ++ + G + + K LNYE K +Y + IQA D + ER
Sbjct: 175 PEDPTSNDTFEIPLML-TGNVVLRKRLNYEDKTRYYVIIQANDRAQNLNER 224
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 63 QVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAAL-----KAIDRDEGQNSYVEYSI 116
+V IV+RD NDN+P F + T+ E +P+ T + A D D+G N +EY I
Sbjct: 112 EVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVI 171
Query: 117 INSEATPFSLGPVD------GLLRVAQKLDREIKSNYTLEIKAKDRGE 158
+ P S + G + + ++L+ E K+ Y + I+A DR +
Sbjct: 172 QYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQANDRAQ 219
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 50/114 (43%), Gaps = 16/114 (14%)
Query: 276 VSILVSDINDNYPVFLHSPYLALVNENTLPGPSFRIMTV-----QAHDADSLPFNGLVRY 330
V I+V D NDN P F H Y A VNE T G + I T A D D P NG + Y
Sbjct: 113 VRIVVRDRNDNSPTFKHESYYATVNELTPVGTT--IFTGFSGDNGATDIDDGP-NGQIEY 169
Query: 331 FLKDXXXXXXXXXXXXXXXDLFRVN-STTGDIYLLKSLDREKQAEYLLTLQAMD 383
++ D F + TG++ L K L+ E + Y + +QA D
Sbjct: 170 VIQ-------YNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQAND 216
>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The
Calcium Bound State, Nmr, 20 Structures
Length = 146
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%)
Query: 131 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 190
G L+V Q LDRE + Y L A + + I + D+NDN P F + + SV
Sbjct: 60 GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 119
Query: 191 PENISVGATVLQVSATDLDDGIN 213
E G +V++VSATD DD +N
Sbjct: 120 AEGAVPGTSVMKVSATDADDDVN 142
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 229 LTISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYP 288
I + G L++ + L+ E A+Y L A G+ E D + I V+D NDN P
Sbjct: 53 FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVE----DPMEIVITVTDQNDNRP 108
Query: 289 VFLHSPYLALVNENTLPGPSFRIMTVQAHDAD 320
F + V E +PG S +M V A DAD
Sbjct: 109 EFTQEVFEGSVAEGAVPGTS--VMKVSATDAD 138
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 17 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 76
+F I G L + LDRE + Y L A + + ++ I + D NDN P
Sbjct: 52 VFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNG---EAVEDPMEIVITVTDQNDNRP 108
Query: 77 EFIT-ANETTIPENSPLNTVVAALKAIDRDEGQNSY 111
EF E ++ E + T V + A D D+ N+Y
Sbjct: 109 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTY 144
>pdb|1ZXK|A Chain A, Crystal Structure Of Cadherin8 Ec1 Domain
pdb|1ZXK|B Chain B, Crystal Structure Of Cadherin8 Ec1 Domain
Length = 98
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 27/33 (81%)
Query: 351 LFRVNSTTGDIYLLKSLDREKQAEYLLTLQAMD 383
+F++N TGDI+ +K LDRE++AEY LT QA+D
Sbjct: 47 IFQINDITGDIHAIKRLDREEKAEYTLTAQAVD 79
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 178 NPIFDSKSYSASVPENISVGATVLQVSATDLDDGINGRVRYTIISGDDNHDL-TISEDNG 236
N +F + +S PE I VG TDLD G + +++Y I+SGD + I++ G
Sbjct: 5 NQMFVLEEFSG--PEPILVGRL-----HTDLDPG-SKKIKY-ILSGDGAGTIFQINDITG 55
Query: 237 LLRIAKNLNYERKAQYSLTIQAED 260
+ K L+ E KA+Y+LT QA D
Sbjct: 56 DIHAIKRLDREEKAEYTLTAQAVD 79
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 4 RLEYSIVSGDDE-EIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTT 62
+++Y I+SGD IF IN G + +K LDRE K+ Y L A D K L +
Sbjct: 34 KIKY-ILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFET--NKPLEPPS 90
Query: 63 QVSIVIRD 70
+ I ++D
Sbjct: 91 EFIIKVQD 98
>pdb|1NCH|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCH|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCG|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
Length = 110
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 5 LEYSIVS-GDDEE---IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSS 60
L YS+ G D+ IF INP +G LS K LDRE + ++L A D+ ++ +
Sbjct: 36 LRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDING---NQVEN 92
Query: 61 TTQVSIVIRDVNDNAPEF 78
+ I + D+NDN PEF
Sbjct: 93 PIDIVINVIDMNDNRPEF 110
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 124 FSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIF 181
F + P+ G L V + LDRE+ + + L A D + I ++D NDN P F
Sbjct: 53 FIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
>pdb|2V37|A Chain A, Solution Structure Of The N-Terminal Extracellular Domain
Of Human T-Cadherin
Length = 105
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 4 RLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQ 63
RL V + + IF IN + G++S + LDRE + Y L V TD+ K L
Sbjct: 36 RLTGKGVDQEPKGIFRINENTGSVSVTRTLDREVIAVYQLFVETTDVNG---KTLEGPVP 92
Query: 64 VSIVIRDVNDNAP 76
+ +++ D NDN P
Sbjct: 93 LEVIVIDQNDNRP 105
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 351 LFRVNSTTGDIYLLKSLDREKQAEYLLTLQAMD 383
+FR+N TG + + ++LDRE A Y L ++ D
Sbjct: 49 IFRINENTGSVSVTRTLDREVIAVYQLFVETTD 81
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Query: 79 ITANETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATP---FSLGPVDGLLRV 135
I + IPEN K +D D + S + + P F + G + V
Sbjct: 2 IVVSPILIPENQRQPFPRDVGKVVDSDRPERSKFRLTGKGVDQEPKGIFRINENTGSVSV 61
Query: 136 AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNP 179
+ LDRE+ + Y L ++ D + + ++D+NDN P
Sbjct: 62 TRTLDREVIAVYQLFVETTDVNGKTLEGPVPLEVIVIDQNDNRP 105
>pdb|1ZVN|A Chain A, Crystal Structure Of Chick Mn-Cadherin Ec1
pdb|1ZVN|B Chain B, Crystal Structure Of Chick Mn-Cadherin Ec1
Length = 99
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 26/33 (78%)
Query: 351 LFRVNSTTGDIYLLKSLDREKQAEYLLTLQAMD 383
+F ++ TTGDI+ ++ LDRE++++Y L QA+D
Sbjct: 48 VFTIDDTTGDIHAIQRLDREERSQYTLRAQALD 80
Score = 34.7 bits (78), Expect = 0.10, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
Query: 102 IDRDEGQNSYVEYSIINSEATP--FSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDR--G 157
+DR +G Y I++ E F++ G + Q+LDRE +S YTL +A DR G
Sbjct: 29 MDRGDGSIKY----ILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALDRRTG 84
Query: 158 EPSKSSRTKFFIRLLD 173
P + ++F I++ D
Sbjct: 85 RPME-PESEFIIKIQD 99
Score = 32.7 bits (73), Expect = 0.32, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 2 NGRLEYSIVSGDDEEI-FTINPSNGTLSNLKHLDRETKSSYNLVVMATD 49
+G ++Y I+SG+ I FTI+ + G + ++ LDRE +S Y L A D
Sbjct: 33 DGSIKY-ILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALD 80
Score = 28.5 bits (62), Expect = 6.1, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 206 TDLDDGINGRVRYTIISGDDNHDLTISEDNGLLRIAKNLNYERKAQYSLTIQAED 260
+D+D G +G ++Y + TI + G + + L+ E ++QY+L QA D
Sbjct: 27 SDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALD 80
>pdb|2WBX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1
Length = 102
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 86 IPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPF-SLGPVDGLLRVAQKLDREIK 144
I E++P+ + V L A D D N + + + EA+ F ++ P G++ + Q LDRE K
Sbjct: 20 ISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETK 76
Query: 145 SNYTLEIKAKDR 156
S +T+E D
Sbjct: 77 SEFTVEFSVSDH 88
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 190 VPENISVGATVLQVSATDLDDGINGRVRYTIISGDDNHDLTISEDNGLLRIAKNLNYERK 249
+ E+ VG++V Q+ A D+D N + + + + + + D G++ + + L+ E K
Sbjct: 20 ISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETK 76
Query: 250 AQYSLTIQAEDCGG 263
+++++ D G
Sbjct: 77 SEFTVEFSVSDHQG 90
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 1 DNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATD 49
DN L + + + F + P G + + LDRETKS + + +D
Sbjct: 39 DNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSD 87
>pdb|2A4C|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1
pdb|2A4C|B Chain B, Crystal Structure Of Mouse Cadherin-11 Ec1
Length = 99
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 351 LFRVNSTTGDIYLLKSLDREKQAEYLLTLQAMD 383
+F ++ +G+I+ K+LDRE++A+Y L QA+D
Sbjct: 48 IFVIDDKSGNIHATKTLDREERAQYTLMAQAVD 80
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 2 NGRLEYSIVSGDDE-EIFTINPSNGTLSNLKHLDRETKSSYNLVVMATD 49
+G ++Y I+SG+ IF I+ +G + K LDRE ++ Y L+ A D
Sbjct: 33 DGNIKY-ILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVD 80
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 206 TDLDDGINGRVRYTIISGDDNHDLTISED-NGLLRIAKNLNYERKAQYSLTIQAED 260
+D+D G +G ++Y I+SG+ + + +D +G + K L+ E +AQY+L QA D
Sbjct: 27 SDIDSG-DGNIKY-ILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVD 80
>pdb|3K6F|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1
pdb|3K6F|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1
Length = 100
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 4 RLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQ 63
RL V D + F IN + G++S + LDRET ++Y L V TD + K L
Sbjct: 37 RLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASG---KTLEGPVP 93
Query: 64 VSIVIRD 70
+ +++ D
Sbjct: 94 LEVIVID 100
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 352 FRVNSTTGDIYLLKSLDREKQAEYLLTLQAMDS 384
FR+N TG + + ++LDRE A Y L ++ D+
Sbjct: 51 FRINENTGSVSVTRTLDRETIATYQLYVETTDA 83
>pdb|3K6I|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1
Length = 99
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 351 LFRVNSTTGDIYLLKSLDREKQAEYLLTLQAMD 383
+FR+N +GD+ + + LDRE A Y L ++ D
Sbjct: 49 IFRINEISGDVSVTRPLDREAIANYELEVEVTD 81
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 4 RLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMA 51
RL V D + IF IN +G +S + LDRE ++Y L V TD++
Sbjct: 36 RLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEVTDLS 83
>pdb|3K6D|A Chain A, Crystal Structure Of Xenopus Laevis T-Cadherin Ec1
Length = 99
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 12 GDDEE---IFTINPSNGTLSNLKHLDRETKSSYNLVVMATD 49
G D+E IF IN ++G +S K LDRE SY L V TD
Sbjct: 41 GVDQEPKGIFKINENSGEVSVTKALDREAIPSYQLQVETTD 81
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 351 LFRVNSTTGDIYLLKSLDREKQAEYLLTLQAMD 383
+F++N +G++ + K+LDRE Y L ++ D
Sbjct: 49 IFKINENSGEVSVTKALDREAIPSYQLQVETTD 81
>pdb|1WYJ|A Chain A, Solution Structure Of Mouse Protocadherin Beta 14 (26-137)
Length = 125
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 9 IVSGDDEEIFTINPSNGTLSNLKHLDRE--TKSSYNLVVMATDMAKPPQKRLSSTTQVSI 66
I+S ++++ + +G L + LDRE S+ ++ + K P + + Q I
Sbjct: 48 ILSKGNKQLLQLEQKSGNLLLKEKLDREELCGSTNPCILHFQVLLKSPVQFI----QGEI 103
Query: 67 VIRDVNDNAPEFI 79
++DVND+APEF+
Sbjct: 104 QLQDVNDHAPEFM 116
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 29.3 bits (64), Expect = 3.6, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 11/58 (18%)
Query: 132 LLRVAQKLDREIKSNY-----------TLEIKAKDRGEPSKSSRTKFFIRLLDENDNN 178
LL+ + L+++IK++Y T+ + K R EP++ R I+++ + DN+
Sbjct: 15 LLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMILKKDND 72
>pdb|2OMX|B Chain B, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 108
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 85 TIPEN--SPLNTVVAALKAIDRDEGQNSYVEYSIINSEA-TP----FSLGPVDGLLRVAQ 137
+ PEN P + +K+ EG+ V YSI A TP F + G L+V +
Sbjct: 12 SCPENEKGPFPKNLVQIKSNKDKEGK---VFYSITGQGADTPPVGVFIIERETGWLKVTE 68
Query: 138 KLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDN 177
LDRE + YTL A + + I + D+NDN
Sbjct: 69 PLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQNDN 108
>pdb|2YQG|A Chain A, Solution Structure Of The First Cadherin Domain From Human
Desmoglein-2
Length = 123
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 229 LTISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYP 288
++D G L + L+ E + LT A D G+ E+ + I V DINDN P
Sbjct: 63 FVFNKDTGELNVTSILDREETPFFLLTGYALDARGNNVEK----PLELRIKVLDINDNEP 118
Query: 289 VF 290
VF
Sbjct: 119 VF 120
>pdb|3PID|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase With A C-Terminal
Six- Histidine Tag
Length = 432
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 9 IVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVI 68
IV + +E P N + KH D + Y V++AT P+ +T+ V VI
Sbjct: 81 IVDKEIQEYLAEKPLNFRATTDKH-DAYRNADY--VIIATPTDYDPKTNYFNTSTVEAVI 137
Query: 69 RDVNDNAPEFITANETTIP 87
RDV + P + ++TIP
Sbjct: 138 RDVTEINPNAVMIIKSTIP 156
>pdb|2X2U|A Chain A, First Two Cadherin-Like Domains From Human Ret
Length = 246
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 112 VEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTL-EIKAKDRGEPSKSSRTKFFIR 170
V Y ++ E PF P + LDRE + Y L + G + F +
Sbjct: 174 VAYRLLEGEGLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVT 233
Query: 171 LLDENDNNPIFD 182
+ DE+D+ P F+
Sbjct: 234 VYDEDDSAPEFE 245
>pdb|3PHL|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase
pdb|3PJG|A Chain A, Crystal Structure Of Udp-Glucose Dehydrogenase From
Klebsiella Pneumoniae Complexed With Product
Udp-Glucuronic Acid
pdb|3PLN|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Udp-Glucose
6-Dehydrogenase Complexed With Udp-Glucose
pdb|3PLR|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Udp-Glucose
6-Dehydrogenase Complexed With Nadh And Udp-Glucose
Length = 424
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 9 IVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVI 68
IV + +E P N + KH D + Y V++AT P+ +T+ V VI
Sbjct: 81 IVDKEIQEYLAEKPLNFRATTDKH-DAYRNADY--VIIATPTDYDPKTNYFNTSTVEAVI 137
Query: 69 RDVNDNAPEFITANETTIP 87
RDV + P + ++TIP
Sbjct: 138 RDVTEINPNAVMIIKSTIP 156
>pdb|1CWW|A Chain A, Solution Structure Of The Caspase Recruitment Domain
(Card) From Apaf-1
Length = 102
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 16/69 (23%)
Query: 126 LGPVDG-----LLRVAQKLDREIKSNY-----------TLEIKAKDRGEPSKSSRTKFFI 169
LG +D LL+ + L+++IK++Y T+ + K R EP++ R I
Sbjct: 3 LGSMDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLI 62
Query: 170 RLLDENDNN 178
+++ + DN+
Sbjct: 63 KMILKKDND 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.132 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,461,190
Number of Sequences: 62578
Number of extensions: 410845
Number of successful extensions: 1223
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 884
Number of HSP's gapped (non-prelim): 209
length of query: 384
length of database: 14,973,337
effective HSP length: 101
effective length of query: 283
effective length of database: 8,652,959
effective search space: 2448787397
effective search space used: 2448787397
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)