RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13120
(384 letters)
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 326 bits (839), Expect = e-108
Identities = 106/408 (25%), Positives = 175/408 (42%), Gaps = 47/408 (11%)
Query: 2 NGRLEYSIVSGDDEE----IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKR 57
++ YSI ++ +F I G L + LDRE + Y L A
Sbjct: 31 ETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEA--- 87
Query: 58 LSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEG---QNSYVE 113
+ ++ I + D NDN PEF E ++ E + T V + A D D+ N+ +
Sbjct: 88 VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIA 147
Query: 114 YSIINSEATP-----FSLGPVDGLLRVAQK-LDREIKSNYTLEIKAKDRGEPSKSSRTKF 167
Y+I++ + F++ G++ V LDRE YTL ++A D S+ K
Sbjct: 148 YTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKA 207
Query: 168 FIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGING--RVRYTIISGDD 225
I + D NDN P+F+ +Y VPEN V A + + TD D + YT+++ D
Sbjct: 208 VITVKDINDNAPVFNPSTYQGQVPEN-EVNARIATLKVTDDDAPNTPAWKAVYTVVNDPD 266
Query: 226 NHDLTISEDN----GLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVS 281
+ D G+L+ AK L++E K QY L ++ E+ + TATV++ V
Sbjct: 267 QQ-FVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVP-STATVTVDVV 324
Query: 282 DINDNYPVFLHSPYLALVNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGN 341
D+N+ P+F+ + V E+ G I + A + D+ + + Y +
Sbjct: 325 DVNEA-PIFMPAERRVEVPEDFGVGQE--ITSYTAREPDTFM-DQKITYRI--------- 371
Query: 342 SQTQGGTGDLFRVNSTTGDIYLLKSLDRE-----KQAEYLLTLQAMDS 384
T + +N TG I+ +DRE K + Y+ + A D
Sbjct: 372 ---WRDTANWLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDD 416
Score = 302 bits (776), Expect = 1e-98
Identities = 98/404 (24%), Positives = 161/404 (39%), Gaps = 47/404 (11%)
Query: 1 DNGRLEYSIVSGDDE----EIFTINPSNGTLSNLKH-LDRETKSSYNLVVMATDMAKPPQ 55
N + Y+IVS D E +FT+N G +S L LDRE+ +Y LVV A D+
Sbjct: 142 YNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEG- 200
Query: 56 KRLSSTTQVSIVIRDVNDNAPEF-ITANETTIPENSPLNTVVAALKAIDRDEGQN--SYV 112
LS+T + I ++D+NDNAP F + + +PEN N +A LK D D
Sbjct: 201 --LSTTAKAVITVKDINDNAPVFNPSTYQGQVPENEV-NARIATLKVTDDDAPNTPAWKA 257
Query: 113 EYSIINSEATPFSLGP----VDGLLRVAQKLDREIKSNYTLEIKAKDRGE---PSKSSRT 165
Y+++N F + DG+L+ A+ LD E K Y L ++ ++ S
Sbjct: 258 VYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTA 317
Query: 166 KFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGINGRVRYTIISGDD 225
+ ++D N+ PIF VPE+ VG + +A + D ++ ++ Y I
Sbjct: 318 TVTVDVVDVNEA-PIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDTA 376
Query: 226 NHDLTISEDNGLLRIAKNLNYE-----RKAQYSLTIQAEDCGGDTEERIRFDTATVSILV 280
N L I+ + G + ++ E + + Y I A D G T T+ +++
Sbjct: 377 NW-LEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSPI----ATGTGTLLLVL 431
Query: 281 SDINDNYPVFLHSPYLALVNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSG 340
D+NDN P+ + D D P L + +
Sbjct: 432 LDVNDNAPIPEPRNMQFCQRNPQ-------PHIITILDPDLPPNTSPFTAELTHGASVNW 484
Query: 341 NSQTQGGTGDLFRVNSTTGDIYLLKSLDREKQAEYLLTLQAMDS 384
N + +L+ + EY + L+ D+
Sbjct: 485 ----------TIEYNDAAQESLILQPRKDLEIGEYKIHLKLADN 518
Score = 239 bits (611), Expect = 4e-74
Identities = 89/316 (28%), Positives = 130/316 (41%), Gaps = 36/316 (11%)
Query: 85 TIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-----PFSLGPVDGLLRVAQKL 139
+ PEN L I + + + V YSI A F + G L+V Q L
Sbjct: 8 SCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPL 66
Query: 140 DREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGAT 199
DRE + Y L A + + I + D+NDN P F + + SV E G +
Sbjct: 67 DREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTS 126
Query: 200 VLQVSATDLDDGI---NGRVRYTIISGDDNHDL----TISEDNGLLRIAK-NLNYERKAQ 251
V++VSATD DD + N + YTI+S D T++ D G++ + L+ E
Sbjct: 127 VMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPT 186
Query: 252 YSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVFLHSPYLALVNENTLPGPSFRI 311
Y+L +QA D G+ TA I V DINDN PVF S Y V EN + I
Sbjct: 187 YTLVVQAADLQGEG----LSTTAKAVITVKDINDNAPVFNPSTYQGQVPENEVNAR---I 239
Query: 312 MTVQAHDADSLPFNGLVRYFLKDSGASSGNSQTQGGTGDLFRV----NSTTGDIYLLKSL 367
T++ D D+ P + F V + G + K L
Sbjct: 240 ATLKVTDDDA-PNTPAWKA----------VYTVVNDPDQQFVVVTDPTTNDGILKTAKGL 288
Query: 368 DREKQAEYLLTLQAMD 383
D E + +Y+L ++ +
Sbjct: 289 DFEAKQQYILHVRVEN 304
Score = 235 bits (601), Expect = 1e-72
Identities = 62/309 (20%), Positives = 109/309 (35%), Gaps = 25/309 (8%)
Query: 1 DNGRLEYSIVSGDDEEIFTINPSN----GTLSNLKHLDRETKSSYNLVVMATDMAKPPQK 56
+ Y++V D ++ F + G L K LD E K Y L V +
Sbjct: 253 PAWKAVYTVV-NDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEGS 311
Query: 57 RLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYS 115
+ ST V++ + DVN+ AP F+ A +PE+ + + + A + D + + Y
Sbjct: 312 LVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYR 370
Query: 116 IINSEATPFSLGPVDGLLRVAQKLDRE-----IKSNYTLEIKAKDRGEPSKSSRTKFFIR 170
I A + P G + ++DRE S Y I A D G P + +
Sbjct: 371 IWRDTANWLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSPIATGTGTLLLV 430
Query: 171 LLDENDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGING-RVRYTIISGDD-NHD 228
LLD NDN PI + ++ ++ D D N + G N
Sbjct: 431 LLDVNDNAPIPEPRNMQFCQRNP-----QPHIITILDPDLPPNTSPFTAELTHGASVNWT 485
Query: 229 LTISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYP 288
+ ++ I + +Y + ++ D + T+ + V D
Sbjct: 486 IEYNDAAQESLILQPRKDLEIGEYKIHLKLADNQN------KDQVTTLDVHVCDCEGTVN 539
Query: 289 VFLHSPYLA 297
+ + +
Sbjct: 540 NCMKAHHHH 548
Score = 63.9 bits (156), Expect = 2e-11
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 11/86 (12%)
Query: 299 VNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGNSQTQGGTGDLFRVNSTT 358
EN G + ++ V Y + GA +F + T
Sbjct: 9 CPENE-KGEF--PKNLVQIKSNR-DKETKVFYSITGQGADKPPV-------GVFIIERET 57
Query: 359 GDIYLLKSLDREKQAEYLLTLQAMDS 384
G + + + LDRE A+Y+L A+ S
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHAVSS 83
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 323 bits (831), Expect = e-106
Identities = 116/411 (28%), Positives = 171/411 (41%), Gaps = 48/411 (11%)
Query: 2 NGRLEYSIVSG----DDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKR 57
N L YS+ IF INP +G LS K LDRE + ++L A D+
Sbjct: 31 NLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQ--- 87
Query: 58 LSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDE--GQNSYVEY 114
+ + + I + D+NDN PEF+ ++PE S T V + AID D+ N + Y
Sbjct: 88 VENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRY 147
Query: 115 SIINSEATP-----FSLGPVDGLLR-VAQKLDREIKSNYTLEIKAKDRGEPSK---SSRT 165
I++ + F++ G + VA LDRE YTL I+A D S+
Sbjct: 148 RILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTA 207
Query: 166 KFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGING--RVRYTIISG 223
I + D NDN P F + ++ VPEN V V ++ TD D Y I G
Sbjct: 208 TAVITVTDVNDNPPEFTAMTFYGEVPEN-RVDVIVANLTVTDKDQPHTPAWNAAYRISGG 266
Query: 224 DDNHDLTISEDN----GLLRIAKNLNYERKAQYSLTIQAEDCGGDTE--ERIRFDTATVS 277
D I D GL+ + K +++E + LT+ AE+ + + TATVS
Sbjct: 267 DPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVS 326
Query: 278 ILVSDINDNYPVFLHSPYLALVNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGA 337
+ V D+N+N P F +P + E G + T+ A D D +RY
Sbjct: 327 VTVIDVNEN-PYFAPNPKIIRQEEGLHAGTM--LTTLTAQDPDRYM-QQNIRYTK----- 377
Query: 338 SSGNSQTQGGTGDLFRVNSTTGDIYLLKSLDRE----KQAEYLLTLQAMDS 384
+ +++ G I + LDRE K Y T A D+
Sbjct: 378 -------LSDPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDN 421
Score = 313 bits (803), Expect = e-102
Identities = 108/408 (26%), Positives = 157/408 (38%), Gaps = 46/408 (11%)
Query: 1 DNGRLEYSIVSGD----DEEIFTINPSNGTLSNLKH-LDRETKSSYNLVVMATDMAKPPQ 55
NG L Y I+S +FTIN G + + LDRE Y L++ ATDM P
Sbjct: 141 LNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPT 200
Query: 56 KRLSSTTQVSIVIRDVNDNAPEF-ITANETTIPENSPLNTVVAALKAIDRDEGQN--SYV 112
LS+T I + DVNDN PEF +PEN + +VA L D+D+
Sbjct: 201 YGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRV-DVIVANLTVTDKDQPHTPAWNA 259
Query: 113 EYSII-NSEATPFSLGPV----DGLLRVAQKLDREIKSNYTLEIKAKDRGE------PSK 161
Y I F++ DGL+ V + +D E + L + A+++
Sbjct: 260 AYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPP 319
Query: 162 SSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGINGRVRYTII 221
S + ++D N+ NP F E + G + ++A D D + +RYT +
Sbjct: 320 QSTATVSVTVIDVNE-NPYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKL 378
Query: 222 SGDDNHDLTISEDNGLLRIAKNLNYE----RKAQYSLTIQAEDCGGDTEERIRFDTATVS 277
S N L I NG + L+ E + Y+ T A D G T T+
Sbjct: 379 SDPANW-LKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPP----MSGTGTLQ 433
Query: 278 ILVSDINDNYPVFLHSPYLALVNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGA 337
I + DINDN P L P A E P + + A D D P G + L S
Sbjct: 434 IYLLDINDNAPQVL--PQEAETCETPEPNS----INITALDYDIDPNAGPFAFDLPLS-- 485
Query: 338 SSGNSQTQGGTGDLFRVNSTTGDI-YLLKSLDREKQAEYLLTLQAMDS 384
+ +N GD L + + Y + + DS
Sbjct: 486 -------PVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITDS 526
Score = 236 bits (605), Expect = 4e-73
Identities = 89/315 (28%), Positives = 135/315 (42%), Gaps = 31/315 (9%)
Query: 85 TIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-----PFSLGPVDGLLRVAQKL 139
+PENS L I D +N + YS+ A F + P+ G L V + L
Sbjct: 8 NLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 66
Query: 140 DREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGAT 199
DRE+ + + L A D + I ++D NDN P F + ++ SVPE G
Sbjct: 67 DRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTY 126
Query: 200 VLQVSATDLDD--GINGRVRYTIISGDDNHDL----TISEDNGLLR-IAKNLNYERKAQY 252
V+ V+A D DD +NG +RY I+S + TI+ + G + +A L+ E+ QY
Sbjct: 127 VMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQY 186
Query: 253 SLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVFLHSPYLALVNENTLPGPSFRIM 312
+L IQA D G+ +TAT I V+D+NDN P F + V EN +
Sbjct: 187 TLIIQATDMEGNPTYG-LSNTATAVITVTDVNDNPPEFTAMTFYGEVPENR---VDVIVA 242
Query: 313 TVQAHDADSLPFNGLVRYFLKDSGASSGNSQTQGGTGDLFRV----NSTTGDIYLLKSLD 368
+ D D P + G F + NS G + ++K +D
Sbjct: 243 NLTVTDKDQ-PHTPAWNAAY---------RISGGDPTGRFAILTDPNSNDGLVTVVKPID 292
Query: 369 REKQAEYLLTLQAMD 383
E ++LT+ A +
Sbjct: 293 FETNRMFVLTVAAEN 307
Score = 232 bits (593), Expect = 2e-71
Identities = 69/311 (22%), Positives = 107/311 (34%), Gaps = 25/311 (8%)
Query: 1 DNGRLEYSIVSGDDEEIFTINPSN----GTLSNLKHLDRETKSSYNLVVMATDMAKPPQK 56
Y I GD F I G ++ +K +D ET + L V A + +
Sbjct: 255 PAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKG 314
Query: 57 ---RLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEGQNSYV 112
ST VS+ + DVN+N P F E T++ L A D D +
Sbjct: 315 IQHPPQSTATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNI 373
Query: 113 EYSIINSEATPFSLGPVDGLLRVAQKLDRE----IKSNYTLEIKAKDRGEPSKSSRTKFF 168
Y+ ++ A + PV+G + LDRE + Y A D G P S
Sbjct: 374 RYTKLSDPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQ 433
Query: 169 IRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGING---RVRYTIISGDD 225
I LLD NDN P A E + ++A D D N +
Sbjct: 434 IYLLDINDNAPQVLP--QEAETCET--PEPNSINITALDYDIDPNAGPFAFDLPLSPVTI 489
Query: 226 NHDLTISEDNG-LLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDIN 284
+ TI+ NG ++ + + Y + I D G + + + + + V +
Sbjct: 490 KRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITDSGN----PPKSNISILRVKVCQCD 545
Query: 285 DNYPVFLHSPY 295
N +
Sbjct: 546 SNGDCTDVHHH 556
Score = 160 bits (408), Expect = 1e-44
Identities = 46/197 (23%), Positives = 86/197 (43%), Gaps = 16/197 (8%)
Query: 1 DNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRET----KSSYNLVVMATDMAKPPQK 56
+ Y+ +S D I+P NG ++ + LDRE+ + YN +A+D PP
Sbjct: 369 MQQNIRYTKLS-DPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPP-- 425
Query: 57 RLSSTTQVSIVIRDVNDNAPEFITANETTIPENSPLNTVVAALKAIDRDEGQNSY-VEYS 115
+S T + I + D+NDNAP+ + E E N++ + A+D D N+ +
Sbjct: 426 -MSGTGTLQIYLLDINDNAPQVLP-QEAETCETPEPNSIN--ITALDYDIDPNAGPFAFD 481
Query: 116 IINSEAT---PFSLGPVDG-LLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRL 171
+ S T +++ ++G ++ K+ Y + I D G P KS+ + +++
Sbjct: 482 LPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITDSGNPPKSNISILRVKV 541
Query: 172 LDENDNNPIFDSKSYSA 188
+ N D +
Sbjct: 542 CQCDSNGDCTDVHHHHH 558
Score = 67.0 bits (164), Expect = 3e-12
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 299 VNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGNSQTQGGTGDLFRVNSTT 358
+ EN+ GP + +D N +RY + GA + +F +N +
Sbjct: 9 LPENS-RGPF--PQELVRIRSDR-DKNLSLRYSVTGPGADQPPT-------GIFIINPIS 57
Query: 359 GDIYLLKSLDREKQAEYLLTLQAMDS 384
G + + K LDRE A + L A+D
Sbjct: 58 GQLSVTKPLDRELIARFHLRAHAVDI 83
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 318 bits (817), Expect = e-106
Identities = 101/410 (24%), Positives = 162/410 (39%), Gaps = 59/410 (14%)
Query: 2 NGRLEYSIVSGDDEEIFTINPSN--------GTLSNLKHLDRETKSS------YNLVVMA 47
G+ + + D+E F I N G + K D E + ++
Sbjct: 24 EGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNM 83
Query: 48 TDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFI---TANETTIPENSPLNTVVAALKAIDR 104
A + +V I+++DVND P FI + + N+P NT V L+A D
Sbjct: 84 GHNAGIK---YTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDP 140
Query: 105 DEGQNSYVEYSIINSEAT-PFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPS--- 160
D N + Y I+ F + G++R ++ Y L +KA+D+
Sbjct: 141 DTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDR 198
Query: 161 KSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGINGRVRYTI 220
+ T + P F SY A +PEN + ++ + A + +RYT+
Sbjct: 199 RFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYTL 255
Query: 221 I-SGDDNHDLTISEDNGLLRIAKNLNYERKAQ---YSLTIQAEDCGGDTEERIRFDTATV 276
G I +G++++AK L++E Q YSL + A + G + +
Sbjct: 256 KAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGG-----FSTSVDL 310
Query: 277 SILVSDINDNYPVFLHSPYLA-LVNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDS 335
+I V+D+NDN P F Y A V+E+ G S I+ V+A D+DS N + Y + D
Sbjct: 311 TIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTS--ILRVKAMDSDS-GSNAEIEYLVSDD 367
Query: 336 GASSGNSQTQGGTGDLFRVNSTTGDIYLLKSLDRE-KQAEYLLTLQAMDS 384
F V+S G I K LD + A Y + A D
Sbjct: 368 ---------------HFAVDS-NGIIVNNKQLDADNNNAYYEFIVTAKDK 401
Score = 240 bits (614), Expect = 5e-76
Identities = 72/286 (25%), Positives = 124/286 (43%), Gaps = 21/286 (7%)
Query: 5 LEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQK-RLSSTTQ 63
+ Y IV F ++ +G + + Y L V A D R ST +
Sbjct: 146 IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPE 205
Query: 64 VSIVIRDVNDNAPEF-ITANETTIPENSPLNTVVAALKAIDRDEGQNSY-VEYSIINSEA 121
+ I AP+F + + E IPEN ++ + ++KA + + Y ++ A
Sbjct: 206 ERLSI-VGGKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFADREIRYTLKAQG--QGA 262
Query: 122 TPFSLGPVDGLLRVAQKLDREIKSN---YTLEIKAKDRGEPSKSSRTKFFIRLLDENDNN 178
F++GP G++++A++LD E Y+L + A + S+ IR+ D NDN
Sbjct: 263 GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATE-DSGGFSTSVDLTIRVTDVNDNA 321
Query: 179 PIFDSKSYSA-SVPENISVGATVLQVSATDLDDGINGRVRYTIISGDDNHDLTISEDNGL 237
P F+ Y A +V E+I +G ++L+V A D D G N + Y + + NG+
Sbjct: 322 PKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVSDD----HFAVDS-NGI 376
Query: 238 LRIAKNLNYER-KAQYSLTIQAEDCGGDTEERIRFDTATVSILVSD 282
+ K L+ + A Y + A+D G + ATV + +
Sbjct: 377 IVNNKQLDADNNNAYYEFIVTAKDKGEPP----KSGVATVRVYTKN 418
Score = 235 bits (601), Expect = 5e-74
Identities = 60/318 (18%), Positives = 106/318 (33%), Gaps = 42/318 (13%)
Query: 86 IPENSPLNTVVAALKAIDRDEGQNSYVEYSIIN---------SEATPFSLGPVDGLLRVA 136
+ + + + D + + + P+ +G +RV
Sbjct: 4 VTRAVRPTKRI---EFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVK 60
Query: 137 QKLDREIKSN------YTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIF--DSKSYSA 188
+K D E + + + + I + D ND P F A
Sbjct: 61 KKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQA 120
Query: 189 SVPENISVGATVLQVSATDLDDGINGRVRYTIISGDDNHDLTISEDNGLLRIAKNLNYER 248
V N V + A D D N + Y I+ + E +G++R ++
Sbjct: 121 VVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQL 178
Query: 249 KAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVFLHSPYLALVNENTLPGPS 308
+Y L ++AED G ++R T + + P F Y A + EN
Sbjct: 179 DMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSD 237
Query: 309 FRIMTVQAHDADSLPFNGLVRYFLKDSGASSGNSQTQGGTGDLFRVNSTTGDIYLLKSLD 368
I++++A + +RY LK G +G F + T+G + L K LD
Sbjct: 238 --IISIKAKSFA----DREIRYTLKAQGQGAG----------TFNIGPTSGIVKLAKELD 281
Query: 369 REKQAE---YLLTLQAMD 383
E + Y L + A +
Sbjct: 282 FEDLRQPHVYSLIVTATE 299
Score = 157 bits (398), Expect = 4e-44
Identities = 50/181 (27%), Positives = 90/181 (49%), Gaps = 15/181 (8%)
Query: 1 DNGRLEYSIV-SGDDEEIFTINPSNGTLSNLKHLDRETKSS---YNLVVMATDMAKPPQK 56
+ + Y++ G F I P++G + K LD E Y+L+V AT+
Sbjct: 247 ADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATE-DSGG-- 303
Query: 57 RLSSTTQVSIVIRDVNDNAPEFITANET--TIPENSPLNTVVAALKAIDRDEGQNSYVEY 114
S++ ++I + DVNDNAP+F + + E+ PL T + +KA+D D G N+ +EY
Sbjct: 304 -FSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEY 362
Query: 115 SIINSEATPFSLGPVDGLLRVAQKLDRE-IKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 173
+ + F++ +G++ ++LD + + Y + AKD+GEP KS + +
Sbjct: 363 LVSDD---HFAVDS-NGIIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRVYTKN 418
Query: 174 E 174
+
Sbjct: 419 K 419
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 320 bits (821), Expect = e-105
Identities = 110/407 (27%), Positives = 170/407 (41%), Gaps = 44/407 (10%)
Query: 1 DNGRLEYSIVSG----DDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQK 56
++ YSI + +F I G + + LDRE Y L A P
Sbjct: 36 RFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSP-- 93
Query: 57 RLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDE---GQNSYV 112
+ +++I + D NDN P+F ++ E T V A+ A D D+ N +
Sbjct: 94 -VEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVL 152
Query: 113 EYSIINSEATP-----FSLGPVDGLLRVAQK-LDREIKSNYTLEIKAKDRGEPSKSSRTK 166
YSI+ + F++ G++ + LDRE YTL ++A D S K
Sbjct: 153 SYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGK 212
Query: 167 FFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGINGRVR-YTIISGDD 225
I++ D NDN PIFD K+Y+A VPEN +G V ++S TDLD + I ++
Sbjct: 213 AIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNE 271
Query: 226 NHDLTISEDN----GLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVS 281
I+ D G+L AK L++E + QY L I E+ + TATV++ V
Sbjct: 272 GGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPT-STATVTVTVE 330
Query: 282 DINDNYPVFLHSPYLALVNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGN 341
D+N+ P F+ + V+E+ G I+++ A D D + YF+
Sbjct: 331 DVNEA-PFFVPAVSRVDVSEDLSRGEK--IISLVAQDPDKQQ-IQKLSYFI--------- 377
Query: 342 SQTQGGTGDLFRVNSTTGDIYLLKSLDRE----KQAEYLLTLQAMDS 384
VN G + +LDRE K Y + + D
Sbjct: 378 ---GNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDD 421
Score = 294 bits (755), Expect = 2e-95
Identities = 103/403 (25%), Positives = 157/403 (38%), Gaps = 47/403 (11%)
Query: 1 DNGRLEYSIVSGD----DEEIFTINPSNGTLS-NLKHLDRETKSSYNLVVMATDMAKPPQ 55
NG L YSI+ D +FTIN G +S LDRE Y L V ATD+
Sbjct: 148 LNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAG- 206
Query: 56 KRLSSTTQVSIVIRDVNDNAPEFI-TANETTIPENSPLNTVVAALKAIDRDEGQN--SYV 112
LS + I I D NDNAP F +PEN V L D D
Sbjct: 207 --LSVEGKAIIQITDANDNAPIFDPKTYTALVPENEI-GFEVQRLSVTDLDMPGTPAWQA 263
Query: 113 EYSIINSEATPFSLGP----VDGLLRVAQKLDREIKSNYTLEIKAKD---RGEPSKSSRT 165
Y I +E F++ G+L A+ LD E++ Y L+I ++ P +S
Sbjct: 264 VYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTA 323
Query: 166 KFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGINGRVRYTIISGDD 225
+ + D N+ P F V E++S G ++ + A D D ++ Y I +
Sbjct: 324 TVTVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPA 382
Query: 226 NHDLTISEDNGLLRIAKNLNYE----RKAQYSLTIQAEDCGGDTEERIRFDTATVSILVS 281
LT+++DNG++ NL+ E + Y++ + D G T T+ + V
Sbjct: 383 RW-LTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSV----GTGTGTLILHVL 437
Query: 282 DINDNYPVFLHSPYLALVNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGN 341
D+NDN PV + ++N P + DAD P + L
Sbjct: 438 DVNDNGPVPSP-RVFTMCDQNPEP------QVLTISDADIPPNTYPYKVSL--------- 481
Query: 342 SQTQGGTGDLFRVNSTTGDIYLLKSLDREKQAEYLLTLQAMDS 384
+ G + G LL + K+ +Y + + D+
Sbjct: 482 --SHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDA 522
Score = 237 bits (607), Expect = 2e-73
Identities = 81/328 (24%), Positives = 134/328 (40%), Gaps = 39/328 (11%)
Query: 75 APEFITAN-ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-----PFSLGP 128
+++ + + E P + +K+ ++ + + V YSI A F +
Sbjct: 5 HHDWVIPPIKVSENERGPFPKRLVQIKS---NKDRFNKVYYSITGQGADNPPQGVFRIEW 61
Query: 129 VDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSA 188
G + V + LDRE Y L A + I ++D+NDN P F +
Sbjct: 62 ETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRG 121
Query: 189 SVPENISVGATVLQVSATDLDD---GINGRVRYTIISGDDNHDL----TISEDNGLLRIA 241
SV E + G V+ VSATD DD +NG + Y+I+ D + TI+ + G++ +
Sbjct: 122 SVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLI 181
Query: 242 -KNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVFLHSPYLALVN 300
L+ E+ +Y+LT+QA D G I ++D NDN P+F Y ALV
Sbjct: 182 GTGLDREKFPEYTLTVQATDLEGAG----LSVEGKAIIQITDANDNAPIFDPKTYTALVP 237
Query: 301 ENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGNSQTQGGTGDLFRV----NS 356
EN F + + D D + A + + G F + S
Sbjct: 238 ENE---IGFEVQRLSVTDLDM-----------PGTPAWQAVYKIRVNEGGFFNITTDPES 283
Query: 357 TTGDIYLLKSLDREKQAEYLLTLQAMDS 384
G + K LD E + +Y+L + ++
Sbjct: 284 NQGILTTAKGLDFELRKQYVLQITVENA 311
Score = 231 bits (591), Expect = 3e-71
Identities = 56/299 (18%), Positives = 103/299 (34%), Gaps = 22/299 (7%)
Query: 2 NGRLEYSIVSGDDEEIFTINPSN----GTLSNLKHLDRETKSSYNLVVMATDMAKPPQKR 57
+ ++ F I G L+ K LD E + Y L + +
Sbjct: 259 PAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPL 318
Query: 58 LSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSI 116
+ST V++ + DVN+ P F+ A + E+ + +L A D D+ Q + Y I
Sbjct: 319 PTSTATVTVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFI 377
Query: 117 INSEATPFSLGPVDGLLRVAQKLDREIK----SNYTLEIKAKDRGEPSKSSRTKFFIRLL 172
N A ++ +G++ LDRE + + YT+ + D G + + +L
Sbjct: 378 GNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVL 437
Query: 173 DENDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGING-RVRYTIISGDDNHDLTI 231
D NDN P+ + ++ ++ +D D N + ++ G D
Sbjct: 438 DVNDNGPVPSPRVFTMCDQNP-----EPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAE 492
Query: 232 SEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVF 290
+ G + +K YS+ + D V+ V
Sbjct: 493 LDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQN------NPQLTVVNATVCSCEGKAIKC 545
Score = 140 bits (355), Expect = 3e-37
Identities = 35/187 (18%), Positives = 70/187 (37%), Gaps = 16/187 (8%)
Query: 1 DNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETK----SSYNLVVMATDMAKPPQK 56
+L Y I + D T+N NG ++ +LDRE++ ++Y ++++ TD
Sbjct: 369 QIQKLSYFIGN-DPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSV-- 425
Query: 57 RLSSTTQVSIVIRDVNDNAPEFITANETTIPENSPLNTVVAALKAIDRDEGQNSYV-EYS 115
+ T + + + DVNDN P T +N + D D N+Y + S
Sbjct: 426 -GTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQVLTI----SDADIPPNTYPYKVS 480
Query: 116 IIN-SEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDE 174
+ + S+ T + G + + K +Y++ + D + + +
Sbjct: 481 LSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVN--ATVCSC 538
Query: 175 NDNNPIF 181
Sbjct: 539 EGKAIKC 545
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 294 bits (754), Expect = 4e-92
Identities = 103/403 (25%), Positives = 157/403 (38%), Gaps = 47/403 (11%)
Query: 1 DNGRLEYSIVSGD----DEEIFTINPSNGTLS-NLKHLDRETKSSYNLVVMATDMAKPPQ 55
NG L YSI+ D +FTIN G +S LDRE Y L V ATD+
Sbjct: 297 LNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAG- 355
Query: 56 KRLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEGQ--NSYV 112
LS + I I D NDNAP F +PEN V L D D
Sbjct: 356 --LSVEGKAIIQITDANDNAPIFDPKTYTALVPENEI-GFEVQRLSVTDLDMPGTPAWQA 412
Query: 113 EYSIINSEATPFSLGPV----DGLLRVAQKLDREIKSNYTLEIKAKD---RGEPSKSSRT 165
Y I +E F++ G+L A+ LD E++ Y L+I ++ P +S
Sbjct: 413 VYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTA 472
Query: 166 KFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGINGRVRYTIISGDD 225
+ + D N+ P F V E++S G ++ + A D D ++ Y I +
Sbjct: 473 TVTVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPA 531
Query: 226 NHDLTISEDNGLLRIAKNLNYE----RKAQYSLTIQAEDCGGDTEERIRFDTATVSILVS 281
LT+++DNG++ NL+ E + Y++ + D G T T+ + V
Sbjct: 532 RW-LTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSV----GTGTGTLILHVL 586
Query: 282 DINDNYPVFLHSPYLALVNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGN 341
D+NDN PV + ++N P + DAD P + L
Sbjct: 587 DVNDNGPVPSP-RVFTMCDQNPEP------QVLTISDADIPPNTYPYKVSL--------- 630
Query: 342 SQTQGGTGDLFRVNSTTGDIYLLKSLDREKQAEYLLTLQAMDS 384
+ G + G LL + K+ +Y + + D+
Sbjct: 631 --SHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDA 671
Score = 269 bits (688), Expect = 1e-82
Identities = 90/418 (21%), Positives = 154/418 (36%), Gaps = 58/418 (13%)
Query: 1 DNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKP------- 53
Y + F + P +GT+ +H+ + + + K
Sbjct: 67 TRKHGLYDVGDSR----FRVLP-DGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVA 121
Query: 54 ------PQKRLSSTTQVSIVIRDVNDNAPEF----ITANETTIPENSPLNTVVAALKAID 103
++ S ++++ ++ + + EN L I
Sbjct: 122 SKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENER-GPFPKRLVQIK 180
Query: 104 RDEGQNSYVEYSIINSEAT-----PFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGE 158
++ + + V YSI A F + G + V + LDRE Y L A
Sbjct: 181 SNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENG 240
Query: 159 PSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSATDLDD---GINGR 215
+ I ++D+NDN P F + SV E + G V+ VSATD DD +NG
Sbjct: 241 SPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGV 300
Query: 216 VRYTIISGDDNHDL----TISEDNGLLRIA-KNLNYERKAQYSLTIQAEDCGGDTEERIR 270
+ Y+I+ D + TI+ + G++ + L+ E+ +Y+LT+QA D G
Sbjct: 301 LSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAG----L 356
Query: 271 FDTATVSILVSDINDNYPVFLHSPYLALVNENTLPGPSFRIMTVQAHDADSLPFNGLVRY 330
I ++D NDN P+F Y ALV EN F + + D D
Sbjct: 357 SVEGKAIIQITDANDNAPIFDPKTYTALVPENE---IGFEVQRLSVTDLDM--------- 404
Query: 331 FLKDSGASSGNSQTQGGTGDLFRVN----STTGDIYLLKSLDREKQAEYLLTLQAMDS 384
+ A + + G F + S G + K LD E + +Y+L + ++
Sbjct: 405 --PGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENA 460
Score = 210 bits (537), Expect = 3e-61
Identities = 72/364 (19%), Positives = 126/364 (34%), Gaps = 40/364 (10%)
Query: 46 MATDMAKPPQK----RLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENS-PLNTVVAAL 99
M + + L V + DV+ P F +A ++ + +
Sbjct: 1 MGSTRLRNASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKV 60
Query: 100 KAIDRDEGQNSYVEYSI----INSEATPFSLGPVDG----LLRVAQKLDREIKSNYTLEI 151
D ++ + + + T V ++ R IK + + +
Sbjct: 61 NFSDCTTRKHGLYDVGDSRFRVLPDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAV 120
Query: 152 KAKDRGEPSKSSRTKFFIRLLDENDNNPIF-----DSKSYSASVPENISVGATVLQVSAT 206
+K ++ + +L + + D V EN G ++
Sbjct: 121 ASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSEN-ERGPFPKRLVQI 179
Query: 207 DLDDGINGRVRYTIISGDDNHDL----TISEDNGLLRIAKNLNYERKAQYSLTIQAEDCG 262
+ +V Y+I ++ I + G + + + L+ E +Y L+ A
Sbjct: 180 KSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSEN 239
Query: 263 GDTEERIRFDTATVSILVSDINDNYPVFLHSPYLALVNENTLPGPSFRIMTVQAHDADSL 322
G E + ++I V D NDN P F + V E PG +M V A D D
Sbjct: 240 GSPVE----EPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQ--VMAVSATDEDDN 293
Query: 323 PF--NGLVRYFLKDSGASSGNSQTQGGTGDLFRVNSTTGDIYLLKS-LDREKQAEYLLTL 379
NG++ Y + + +LF +N TG I L+ + LDREK EY LT+
Sbjct: 294 IDSLNGVLSYSILK-------QDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTV 346
Query: 380 QAMD 383
QA D
Sbjct: 347 QATD 350
Score = 139 bits (351), Expect = 4e-36
Identities = 38/207 (18%), Positives = 74/207 (35%), Gaps = 16/207 (7%)
Query: 1 DNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETK----SSYNLVVMATDMAKPPQK 56
+L Y I + D T+N NG ++ +LDRE++ ++Y ++++ TD
Sbjct: 518 QIQKLSYFIGN-DPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSV-- 574
Query: 57 RLSSTTQVSIVIRDVNDNAPEFITANETTIPENSPLNTVVAALKAIDRDEGQNSY-VEYS 115
+ T + + + DVNDN P T +N + D D N+Y + S
Sbjct: 575 -GTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQVLTI----SDADIPPNTYPYKVS 629
Query: 116 IIN-SEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDE 174
+ + S+ T + G + + K +Y++ + D + + +
Sbjct: 630 LSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVN--ATVCSC 687
Query: 175 NDNNPIFDSKSYSASVPENISVGATVL 201
K I V +
Sbjct: 688 EGKAIKCQEKLVGGFDLPIILVILGSV 714
Score = 131 bits (331), Expect = 1e-33
Identities = 33/250 (13%), Positives = 73/250 (29%), Gaps = 38/250 (15%)
Query: 153 AKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPE-NISVGATVLQVSATDLDDG 211
A D + P F S Y SV + G + +V+ +D
Sbjct: 9 ASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTR 68
Query: 212 INGRVRYTIISGDDNHDLTISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGG-------- 263
+G + + D G + + +++ + +++++
Sbjct: 69 KHGLYDVG------DSRFRVLPD-GTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVA 121
Query: 264 --DTEERIRFDTATVSILVSDINDNYPVFLHS-------PYLALVNENTLPGPSFRIMTV 314
+ + + V + + P NE +
Sbjct: 122 SKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFP-----KRL 176
Query: 315 QAHDADSLPFNGLVRYFLKDSGASSGNSQTQGGTGDLFRVNSTTGDIYLLKSLDREKQAE 374
++ V Y + GA + +FR+ TG + + + LDRE+ +
Sbjct: 177 VQIKSNK-DRFNKVYYSITGQGADNPPQ-------GVFRIEWETGWMLVTRPLDREEYDK 228
Query: 375 YLLTLQAMDS 384
Y+L+ A+
Sbjct: 229 YVLSSHAVSE 238
Score = 53.3 bits (128), Expect = 8e-08
Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 5/97 (5%)
Query: 3 GRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTT 62
+ S+ G D S GT L + K Y++ V+ +D PQ T
Sbjct: 624 YPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQ-----LT 678
Query: 63 QVSIVIRDVNDNAPEFITANETTIPENSPLNTVVAAL 99
V+ + A + L + + L
Sbjct: 679 VVNATVCSCEGKAIKCQEKLVGGFDLPIILVILGSVL 715
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 272 bits (697), Expect = 1e-89
Identities = 100/293 (34%), Positives = 147/293 (50%), Gaps = 17/293 (5%)
Query: 2 NGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSST 61
+ +++Y + IF IN G + +K LDRE K+ Y L A D L
Sbjct: 32 SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNKP--LEPP 89
Query: 62 TQVSIVIRDVNDNAPEF-ITANETTIPENSPLNTVVAALKAIDRDE---GQNSYVEYSII 117
++ I ++D+NDNAPEF T+PE S L T V + A D D+ G ++ + YSI+
Sbjct: 90 SEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSIL 149
Query: 118 NSEATPFSLGPVDGLLRVAQK-LDREIKSNYTLEIKAKDRG--EPSKSSRTKFFIRLLDE 174
+ FS+ P +++ A +DRE K Y + I+AKD G S T + L D
Sbjct: 150 EGQ-PYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDV 208
Query: 175 NDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGINGRVRYTIISGDDNHDLTISED 234
NDN P F Y SVPE++ +G + +V A D D G N + Y II GD I+ D
Sbjct: 209 NDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSD 268
Query: 235 ----NGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRF---DTATVSILV 280
+G++R+ K L++E K Y+L ++A + D R DTATV I+V
Sbjct: 269 AQAQDGVIRLRKPLDFETKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKIVV 321
Score = 251 bits (643), Expect = 2e-81
Identities = 90/310 (29%), Positives = 147/310 (47%), Gaps = 29/310 (9%)
Query: 85 TIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEA-TPFSLGPVDGLLRVAQKLDREI 143
+ E S ++ D D G + ++Y + A T F + + G + ++LDRE
Sbjct: 9 VLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREE 67
Query: 144 KSNYTLEIKAKDR-GEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQ 202
K+ YTL +A D ++F I++ D NDN P F + Y A+VPE +G +V
Sbjct: 68 KAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTN 127
Query: 203 VSATDLDD---GINGRVRYTIISGDDNHDLTISEDNGLLRIA-KNLNYERKAQYSLTIQA 258
V+ATD DD G + ++ Y+I+ G +I + +++ A N++ E K +Y + IQA
Sbjct: 128 VTATDADDPVYGNSAKLVYSILEGQP--YFSIEPETAIIKTALPNMDREAKEEYLVVIQA 185
Query: 259 EDCGGDTEERIRFDTATVSILVSDINDNYPVFLHSPYLALVNENTLPGPSFRIMTVQAHD 318
+D GG + T T+++ ++D+NDN P F S Y V E+ + G + I V+A+D
Sbjct: 186 KDMGGHSGGL--SGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTA--IGRVKAND 241
Query: 319 ADSLPFNGLVRYFLKDSGASSGNSQTQGGTGDLFRV----NSTTGDIYLLKSLDREKQAE 374
D N Y + G LF + + G I L K LD E +
Sbjct: 242 QDI-GENAQSSYDI-----------IDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKS 289
Query: 375 YLLTLQAMDS 384
Y L ++A +
Sbjct: 290 YTLKVEAANI 299
Score = 163 bits (414), Expect = 2e-47
Identities = 56/208 (26%), Positives = 91/208 (43%), Gaps = 25/208 (12%)
Query: 179 PIFDSKSYSASVPENISVGATVLQVSATDLDDGINGRVRYTIISGDDNHDLTISEDNGLL 238
++ + + E ++ TDLD G + +++Y + I++ G +
Sbjct: 2 WVW---NQMFVLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDI 57
Query: 239 RIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVFLHSPYLAL 298
K L+ E KA+Y+LT QA D + + + I V DINDN P FL+ PY A
Sbjct: 58 HAIKRLDREEKAEYTLTAQAVDFETN---KPLEPPSEFIIKVQDINDNAPEFLNGPYHAT 114
Query: 299 VNENTLPGPSFRIMTVQAHDADSLPF--NGLVRYFLKDSGASSGNSQTQGGTGDLFRVNS 356
V E ++ G S + V A DAD + + + Y + + F +
Sbjct: 115 VPEMSILGTS--VTNVTATDADDPVYGNSAKLVYSILEG-------------QPYFSIEP 159
Query: 357 TTGDIY-LLKSLDREKQAEYLLTLQAMD 383
T I L ++DRE + EYL+ +QA D
Sbjct: 160 ETAIIKTALPNMDREAKEEYLVVIQAKD 187
Score = 157 bits (399), Expect = 3e-45
Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 1 DNGRLEYSIVSGDDEEIFTINPSNGTLS-NLKHLDRETKSSYNLVVMATDMAKPPQKRLS 59
++ +L YSI+ G F+I P + L ++DRE K Y +V+ A DM LS
Sbjct: 140 NSAKLVYSILEGQP--YFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSG-GLS 196
Query: 60 STTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIIN 118
TT +++ + DVNDN P+F + ++PE+ L T + +KA D+D G+N+ Y II+
Sbjct: 197 GTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIID 256
Query: 119 S-EATPFSL----GPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFF 168
F + DG++R+ + LD E K +YTL+++A + + S F
Sbjct: 257 GDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAANIHIDPRFSSRGPF 311
Score = 71.2 bits (175), Expect = 6e-14
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 18/97 (18%)
Query: 288 PVFLHSPYLALVNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGNSQTQGG 347
V+ + ++ E + P P ++ D D + ++Y L GA
Sbjct: 2 WVW---NQMFVLEEFSGPEPI--LVGRLHTDLDP--GSKKIKYILSGDGA---------- 44
Query: 348 TGDLFRVNSTTGDIYLLKSLDREKQAEYLLTLQAMDS 384
G +F++N TGDI+ +K LDRE++AEY LT QA+D
Sbjct: 45 -GTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDF 80
Score = 70.4 bits (173), Expect = 9e-14
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 1 DNGRLEYSIVSGDDEEIFTI----NPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQK 56
+N + Y I+ GD +F I +G + K LD ETK SY L V A ++ P+
Sbjct: 246 ENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAANIHIDPRF 305
Query: 57 R----LSSTTQVSIVI 68
T V IV+
Sbjct: 306 SSRGPFKDTATVKIVV 321
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 243 bits (623), Expect = 1e-78
Identities = 72/311 (23%), Positives = 125/311 (40%), Gaps = 38/311 (12%)
Query: 1 DNGRLEYSIVSGDDEEIFTIN--------PSNGTLSNLKHLDRETKSS------YNLVVM 46
G+ + + D+E F I +NG + K D E + ++
Sbjct: 18 TEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITN 77
Query: 47 ATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFI---TANETTIPENSPLNTVVAALKAID 103
A + +V I+++DVND P FI + + N+P NT V L+A D
Sbjct: 78 MGHNAGIK---YTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARD 134
Query: 104 RDEGQNSYVEYSII-NSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEP--- 159
D N + Y I+ + F + G++R ++ Y L +KA+D+
Sbjct: 135 PDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDD 192
Query: 160 SKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGINGRVRYT 219
+ T + P F SY A +PEN + ++ + A + +RYT
Sbjct: 193 RRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYT 249
Query: 220 II-SGDDNHDLTISEDNGLLRIAKNLNYERKAQ---YSLTIQAEDCGGDTEERIRFDTAT 275
+ G I +G++++AK L++E Q YSL + A + G +
Sbjct: 250 LKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGG-----FSTSVD 304
Query: 276 VSILVSDINDN 286
++I V+D+NDN
Sbjct: 305 LTIRVTDVNDN 315
Score = 243 bits (622), Expect = 1e-78
Identities = 60/309 (19%), Positives = 107/309 (34%), Gaps = 39/309 (12%)
Query: 96 VAALKAIDRDEGQNSYVEYSIIN---------SEATPFSLGPVDGLLRVAQKLDREIKSN 146
++ + D + + + P+ +G +RV +K D E
Sbjct: 6 TKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGP 65
Query: 147 ------YTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKS--YSASVPENISVGA 198
+ + + + I + D ND P F ++ A V N
Sbjct: 66 EKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNT 125
Query: 199 TVLQVSATDLDDGINGRVRYTIISGDDNHDLTISEDNGLLRIAKNLNYERKAQYSLTIQA 258
V + A D D N + Y I+ + E +G++R ++ +Y L ++A
Sbjct: 126 PVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKA 183
Query: 259 EDCGGDTEERIRFDTATVSILVSDINDNYPVFLHSPYLALVNENTLPGPSFRIMTVQAHD 318
ED G ++R T + + P F Y A + EN I++++A
Sbjct: 184 EDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSD--IISIKAKS 240
Query: 319 ADSLPFNGLVRYFLKDSGASSGNSQTQGGTGDLFRVNSTTGDIYLLKSLDREKQAE---Y 375
+ +RY LK G +G F + T+G + L K LD E + Y
Sbjct: 241 FA----DREIRYTLKAQGQGAG----------TFNIGPTSGIVKLAKELDFEDLRQPHVY 286
Query: 376 LLTLQAMDS 384
L + A +
Sbjct: 287 SLIVTATED 295
Score = 145 bits (367), Expect = 1e-40
Identities = 44/205 (21%), Positives = 73/205 (35%), Gaps = 36/205 (17%)
Query: 195 SVGATVLQVSATDLDDGINGRVRYTIISGDDNHDLTISEDN--------GLLRIAKNLNY 246
S ++ T+ D G+ + + D I +DN G +R+ K +Y
Sbjct: 1 SAVRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDY 60
Query: 247 ERKAQ------YSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVFLHSP--YLAL 298
E + + G D V ILV D+ND P F++ P A+
Sbjct: 61 EELGPEKTIDFWVIITNMGHNAGIK----YTDNQRVIILVKDVNDEPPYFINRPLPMQAV 116
Query: 299 VNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGNSQTQGGTGDLFRVNSTT 358
V N P + T+QA D D+ + + TG F V+ +
Sbjct: 117 VQLNAPPN--TPVFTLQARDP--------------DTDHNIHYFIVRDRTGGRFEVDERS 160
Query: 359 GDIYLLKSLDREKQAEYLLTLQAMD 383
G + + + EY+L ++A D
Sbjct: 161 GVVRTRGTDLFQLDMEYVLYVKAED 185
Score = 81.7 bits (202), Expect = 1e-17
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 1 DNGRLEYSIV-SGDDEEIFTINPSNGTLSNLKHLDRETKSS---YNLVVMATDMAKPPQK 56
+ + Y++ G F I P++G + K LD E Y+L+V AT+ +
Sbjct: 242 ADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGG--- 298
Query: 57 RLSSTTQVSIVIRDVNDNA 75
S++ ++I + DVNDNA
Sbjct: 299 -FSTSVDLTIRVTDVNDNA 316
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 210 bits (538), Expect = 3e-67
Identities = 63/219 (28%), Positives = 98/219 (44%), Gaps = 15/219 (6%)
Query: 72 NDNAPEFITA---NETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-PFSLG 127
+ P F I E++P+ + V L A D D + + EA+ F++
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLVF---GVSGEEASRFFAVE 58
Query: 128 PVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYS 187
P G++ + Q LDRE KS +T+E D K I++ D NDN P F ++ YS
Sbjct: 59 PDTGVVWLRQPLDRETKSEFTVEFSVSDHQ---GVITRKVNIQVGDVNDNAPTFHNQPYS 115
Query: 188 ASVPENISVGATVLQVSATDLDDGINGRVRYTIISGDDNHDLTISEDNGLLRIAKNLNYE 247
+PEN VG + V+ATD D G G V Y+ I G++ + + L+YE
Sbjct: 116 VRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSP--FFAIDSARGIVTVIQELDYE 173
Query: 248 RKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDN 286
Y LT+ A D A ++I+++D+ D
Sbjct: 174 VTQAYQLTVNATDQDKTRP---LSTLANLAIIITDMQDM 209
Score = 190 bits (484), Expect = 3e-59
Identities = 53/212 (25%), Positives = 91/212 (42%), Gaps = 28/212 (13%)
Query: 174 ENDNNPIFDSKSYSAS--VPENISVGATVLQVSATDLDDGINGRVRYTIISGDDNHDLTI 231
+ + P F + + + E+ VG++V Q+ A D+D N + + + + + +
Sbjct: 1 QVNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAV 57
Query: 232 SEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVFL 291
D G++ + + L+ E K+++++ D G T V+I V D+NDN P F
Sbjct: 58 EPDTGVVWLRQPLDRETKSEFTVEFSVSDHQG-------VITRKVNIQVGDVNDNAPTFH 110
Query: 292 HSPYLALVNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGNSQTQGGTGDL 351
+ PY + ENT G I V A D D G V Y +
Sbjct: 111 NQPYSVRIPENTPVGTP--IFIVNATDPDLGA-GGSVLYSFQPPS-------------PF 154
Query: 352 FRVNSTTGDIYLLKSLDREKQAEYLLTLQAMD 383
F ++S G + +++ LD E Y LT+ A D
Sbjct: 155 FAIDSARGIVTVIQELDYEVTQAYQLTVNATD 186
Score = 185 bits (471), Expect = 3e-57
Identities = 53/180 (29%), Positives = 81/180 (45%), Gaps = 9/180 (5%)
Query: 1 DNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSS 60
DN L + + + F + P G + + LDRETKS + + +D
Sbjct: 38 DNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGV------I 91
Query: 61 TTQVSIVIRDVNDNAPEF-ITANETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINS 119
T +V+I + DVNDNAP F IPEN+P+ T + + A D D G V YS
Sbjct: 92 TRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPP 151
Query: 120 EATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSK-SSRTKFFIRLLDENDNN 178
F++ G++ V Q+LD E+ Y L + A D+ + S+ I + D D +
Sbjct: 152 SPF-FAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDMD 210
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 194 bits (495), Expect = 1e-60
Identities = 62/210 (29%), Positives = 105/210 (50%), Gaps = 11/210 (5%)
Query: 85 TIPENSPLNTVVAALKAIDRDEGQNSYVEYSII-NSEATPFSLGPVDGLLRVAQKLDREI 143
I E + + V+ D D G + ++Y + T F + G + + LDRE
Sbjct: 10 VIEEYTGPDPVLVGRLHSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREE 68
Query: 144 KSNYTLEIKAKDRGEP-SKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQ 202
++ YTL +A DR ++F +++ D NDN P F + Y A+VPE +VG +V+Q
Sbjct: 69 RAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQ 128
Query: 203 VSATDLDD---GINGRVRYTIISGDDNHDLTISEDNGLLRIA-KNLNYERKAQYSLTIQA 258
V+A+D DD G + ++ Y+I+ G ++ G++R A N++ E K +Y + IQA
Sbjct: 129 VTASDADDPTYGNSAKLVYSILEGQPY--FSVEAQTGIIRTALPNMDREAKEEYHVVIQA 186
Query: 259 EDCGGDTEERIRFDTATVSILVSDINDNYP 288
+D GG T V+I ++D +
Sbjct: 187 KDMGGHMGG--LSGTTKVTITLTDDYKDDD 214
Score = 178 bits (454), Expect = 1e-54
Identities = 56/185 (30%), Positives = 91/185 (49%), Gaps = 10/185 (5%)
Query: 2 NGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSST 61
+G ++Y + IF I+ +G + K LDRE ++ Y L+ A D L
Sbjct: 33 DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRP--LEPP 90
Query: 62 TQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDE---GQNSYVEYSII 117
++ + ++D+NDN PEF+ +PE S + T V + A D D+ G ++ + YSI+
Sbjct: 91 SEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSIL 150
Query: 118 NSEATPFSLGPVDGLLRVAQK-LDREIKSNYTLEIKAKDRG--EPSKSSRTKFFIRLLDE 174
+ FS+ G++R A +DRE K Y + I+AKD G S TK I L D+
Sbjct: 151 EGQ-PYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDD 209
Query: 175 NDNNP 179
++
Sbjct: 210 YKDDD 214
Score = 169 bits (429), Expect = 5e-51
Identities = 56/202 (27%), Positives = 88/202 (43%), Gaps = 22/202 (10%)
Query: 185 SYSASVPENISVGATVLQVSATDLDDGINGRVRYTIISGDDNHDLTISEDNGLLRIAKNL 244
+ + E ++ +D+D G +G ++Y + I + +G + K L
Sbjct: 6 NQFFVIEEYTGPDPVLVGRLHSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTL 64
Query: 245 NYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVFLHSPYLALVNENTL 304
+ E +AQY+L QA D + R + + V DINDN P FLH Y A V E +
Sbjct: 65 DREERAQYTLMAQAVDRDTN---RPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSN 121
Query: 305 PGPSFRIMTVQAHDADSLPF--NGLVRYFLKDSGASSGNSQTQGGTGDLFRVNSTTGDIY 362
G S ++ V A DAD + + + Y + G F V + TG I
Sbjct: 122 VGTS--VIQVTASDADDPTYGNSAKLVYSI-----LEGQ--------PYFSVEAQTGIIR 166
Query: 363 L-LKSLDREKQAEYLLTLQAMD 383
L ++DRE + EY + +QA D
Sbjct: 167 TALPNMDREAKEEYHVVIQAKD 188
Score = 91.6 bits (228), Expect = 9e-22
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 1 DNGRLEYSIVSGDDEEIFTINPSNGTLS-NLKHLDRETKSSYNLVVMATDMAKPPQKRLS 59
++ +L YSI+ G F++ G + L ++DRE K Y++V+ A DM LS
Sbjct: 141 NSAKLVYSILEGQP--YFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGG-LS 197
Query: 60 STTQVSIVIRDVNDNAPE 77
TT+V+I + D + +
Sbjct: 198 GTTKVTITLTDDYKDDDK 215
Score = 78.5 bits (194), Expect = 3e-17
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 15/91 (16%)
Query: 294 PYLALVNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGNSQTQGGTGDLFR 353
++ E T P P + D DS +G ++Y L GA G +F
Sbjct: 6 NQFFVIEEYTGPDPVL--VGRLHSDIDSG--DGNIKYILSGEGA-----------GTIFV 50
Query: 354 VNSTTGDIYLLKSLDREKQAEYLLTLQAMDS 384
++ +G+I+ K+LDRE++A+Y L QA+D
Sbjct: 51 IDDKSGNIHATKTLDREERAQYTLMAQAVDR 81
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 194 bits (494), Expect = 1e-60
Identities = 66/213 (30%), Positives = 98/213 (46%), Gaps = 14/213 (6%)
Query: 82 NETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSII-----NSEATPFSLGPVDGLLRVA 136
+PENS L I D +N + YS+ F + P+ G L V
Sbjct: 5 PPINLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVT 63
Query: 137 QKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISV 196
+ LDRE+ + + L A D + I ++D NDN P F + ++ SVPE
Sbjct: 64 KPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKP 123
Query: 197 GATVLQVSATDLDD--GINGRVRYTIISGDDNHDL----TISEDNGLLR-IAKNLNYERK 249
G V+ V+A D DD +NG +RY I+S + TI+ + G + +A L+ E+
Sbjct: 124 GTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKV 183
Query: 250 AQYSLTIQAEDCGGDTEERIRFDTATVSILVSD 282
QY+L IQA D G+ +TAT I V+D
Sbjct: 184 QQYTLIIQATDMEGNPTYG-LSNTATAVITVTD 215
Score = 160 bits (407), Expect = 8e-48
Identities = 63/201 (31%), Positives = 93/201 (46%), Gaps = 20/201 (9%)
Query: 189 SVPENISVGATVLQVSATDLDDGINGRVRYTIISGDDNHDL----TISEDNGLLRIAKNL 244
++PEN S G ++ D N +RY++ + I+ +G L + K L
Sbjct: 8 NLPEN-SRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 66
Query: 245 NYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVFLHSPYLALVNENTL 304
+ E A++ L A D G + + I V D+NDN P FLH + V E +
Sbjct: 67 DRELIARFHLRAHAVDING----NQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSK 122
Query: 305 PGPSFRIMTVQAHDADSLP-FNGLVRYFLKDSGASSGNSQTQGGTGDLFRVNSTTGDIYL 363
PG +MTV A DAD NG++RY + S T ++F +N+ TGDI
Sbjct: 123 PGTY--VMTVTAIDADDPNALNGMLRYRI-----LSQAPSTPS--PNMFTINNETGDIIT 173
Query: 364 L-KSLDREKQAEYLLTLQAMD 383
+ LDREK +Y L +QA D
Sbjct: 174 VAAGLDREKVQQYTLIIQATD 194
Score = 152 bits (387), Expect = 8e-45
Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 19/189 (10%)
Query: 1 DNGRLEYSIVSG----DDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQK 56
N L YS+ IF INP +G LS K LDRE + ++L A D+
Sbjct: 30 KNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQ-- 87
Query: 57 RLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDE--GQNSYVE 113
+ + + I + D+NDN PEF+ ++PE S T V + AID D+ N +
Sbjct: 88 -VENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLR 146
Query: 114 YSIINSEATP-----FSLGPVDGLLRVAQK-LDREIKSNYTLEIKAKDRGEPSK---SSR 164
Y I++ + F++ G + LDRE YTL I+A D S+
Sbjct: 147 YRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNT 206
Query: 165 TKFFIRLLD 173
I + D
Sbjct: 207 ATAVITVTD 215
Score = 68.5 bits (168), Expect = 1e-13
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 299 VNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGNSQTQGGTGDLFRVNSTT 358
+ EN+ GP + +D N +RY + GA +F +N +
Sbjct: 9 LPENS-RGPF--PQELVRIRSDR-DKNLSLRYSVTGPGA-------DQPPTGIFIINPIS 57
Query: 359 GDIYLLKSLDREKQAEYLLTLQAMDS 384
G + + K LDRE A + L A+D
Sbjct: 58 GQLSVTKPLDRELIARFHLRAHAVDI 83
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 192 bits (490), Expect = 4e-60
Identities = 62/214 (28%), Positives = 90/214 (42%), Gaps = 18/214 (8%)
Query: 82 NETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSII-----NSEATPFSLGPVDGLLRVA 136
+ PEN L I + + + V YSI F + G L+V
Sbjct: 5 AAISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT 63
Query: 137 QKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISV 196
Q LDRE + Y L A + + I + D+NDN P F + + SV E
Sbjct: 64 QPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVP 123
Query: 197 GATVLQVSATDLDDGI---NGRVRYTIISGDDNHDL----TISEDNGLLRIA-KNLNYER 248
G +V++VSATD DD + N + YTI+S D T++ D G++ + L+ E
Sbjct: 124 GTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRES 183
Query: 249 KAQYSLTIQAEDCGGDTEERIRFDTATVSILVSD 282
Y+L +QA D G+ TA I V D
Sbjct: 184 YPTYTLVVQAADLQGEG----LSTTAKAVITVKD 213
Score = 162 bits (411), Expect = 3e-48
Identities = 57/205 (27%), Positives = 83/205 (40%), Gaps = 21/205 (10%)
Query: 186 YSASVPENISVGATVLQVSATDLDDGINGRVRYTIISGDDNHDL----TISEDNGLLRIA 241
+ S PEN G + + +V Y+I + I + G L++
Sbjct: 5 AAISCPEN-EKGEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT 63
Query: 242 KNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVFLHSPYLALVNE 301
+ L+ E A+Y L A G D + I V+D NDN P F + V E
Sbjct: 64 QPLDREAIAKYILYSHAVSSNG----EAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 302 NTLPGPSFRIMTVQAHDADS--LPFNGLVRYFLKDSGASSGNSQTQGGTGDLFRVNSTTG 359
+PG S +M V A DAD +N + Y + + + ++F VN TG
Sbjct: 120 GAVPGTS--VMKVSATDADDDVNTYNAAIAYTIV-------SQDPELPHKNMFTVNRDTG 170
Query: 360 DIYLLKS-LDREKQAEYLLTLQAMD 383
I +L S LDRE Y L +QA D
Sbjct: 171 VISVLTSGLDRESYPTYTLVVQAAD 195
Score = 157 bits (399), Expect = 1e-46
Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 17/186 (9%)
Query: 2 NGRLEYSIVSG----DDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKR 57
++ YSI +F I G L + LDRE + Y L A
Sbjct: 31 ETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEA--- 87
Query: 58 LSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEG---QNSYVE 113
+ ++ I + D NDN PEF E ++ E + T V + A D D+ N+ +
Sbjct: 88 VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIA 147
Query: 114 YSIINSEATP-----FSLGPVDGLLRVAQK-LDREIKSNYTLEIKAKDRGEPSKSSRTKF 167
Y+I++ + F++ G++ V LDRE YTL ++A D S+ K
Sbjct: 148 YTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKA 207
Query: 168 FIRLLD 173
I + D
Sbjct: 208 VITVKD 213
Score = 75.5 bits (186), Expect = 4e-16
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 1 DNGRLEYSIVSGDDE----EIFTINPSNGTLS-NLKHLDRETKSSYNLVVMATDMAKPPQ 55
N + Y+IVS D E +FT+N G +S LDRE+ +Y LVV A D+
Sbjct: 142 YNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEG- 200
Query: 56 KRLSSTTQVSIVIRD 70
LS+T + I ++D
Sbjct: 201 --LSTTAKAVITVKD 213
Score = 67.7 bits (166), Expect = 2e-13
Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 11/93 (11%)
Query: 292 HSPYLALVNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGNSQTQGGTGDL 351
EN G + ++ V Y + GA +
Sbjct: 2 WVIAAISCPENE-KGEF--PKNLVQIKSNR-DKETKVFYSITGQGADKPPV-------GV 50
Query: 352 FRVNSTTGDIYLLKSLDREKQAEYLLTLQAMDS 384
F + TG + + + LDRE A+Y+L A+ S
Sbjct: 51 FIIERETGWLKVTQPLDREAIAKYILYSHAVSS 83
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 184 bits (470), Expect = 3e-57
Identities = 64/211 (30%), Positives = 106/211 (50%), Gaps = 11/211 (5%)
Query: 78 FITANETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEA-TPFSLGPVDGLLRVA 136
++ + E + + D+D G S ++Y + A F + G ++
Sbjct: 2 WMANQFFLLEEYTGSDYQYVGKLHSDQDRGDGS-LKYILSGDGAGDLFIINENTGDIQAT 60
Query: 137 QKLDREIKSNYTLEIKAKDRG-EPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENIS 195
++LDRE K Y L +A +R ++F I++ D NDN PIF Y+A+VPE
Sbjct: 61 KRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMAD 120
Query: 196 VGATVLQVSATDLDD---GINGRVRYTIISGDDNHDLTISEDNGLLRIA-KNLNYERKAQ 251
VG V+QV+ATD DD G + +V Y+I+ G ++ + G+++ A N++ E + Q
Sbjct: 121 VGTFVVQVTATDADDPTYGNSAKVVYSILQGQP--YFSVESETGIIKTALLNMDRENREQ 178
Query: 252 YSLTIQAEDCGGDTEERIRFDTATVSILVSD 282
Y + IQA+D GG T TV+I ++D
Sbjct: 179 YQVVIQAKDMGGQMGG--LSGTTTVNITLTD 207
Score = 166 bits (422), Expect = 6e-50
Identities = 53/202 (26%), Positives = 81/202 (40%), Gaps = 22/202 (10%)
Query: 185 SYSASVPENISVGATVLQVSATDLDDGINGRVRYTIISGDDNHDLTISEDNGLLRIAKNL 244
+ + E + +D D G +G ++Y + I+E+ G ++ K L
Sbjct: 5 NQFFLLEEYTGSDYQYVGKLHSDQDRG-DGSLKYILSGDGAGDLFIINENTGDIQATKRL 63
Query: 245 NYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVFLHSPYLALVNENTL 304
+ E K Y L QA + R + I + DINDN P+F Y A V E
Sbjct: 64 DREEKPVYILRAQAVNRRT---GRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMAD 120
Query: 305 PGPSFRIMTVQAHDADSLPF--NGLVRYFLKDSGASSGNSQTQGGTGDLFRVNSTTGDIY 362
G ++ V A DAD + + V Y + G F V S TG I
Sbjct: 121 VGTF--VVQVTATDADDPTYGNSAKVVYSI-----LQGQ--------PYFSVESETGIIK 165
Query: 363 L-LKSLDREKQAEYLLTLQAMD 383
L ++DRE + +Y + +QA D
Sbjct: 166 TALLNMDRENREQYQVVIQAKD 187
Score = 165 bits (421), Expect = 7e-50
Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 10/179 (5%)
Query: 2 NGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSST 61
+G L+Y + ++F IN + G + K LDRE K Y L A + +
Sbjct: 32 DGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAVNRRTGRP--VEPE 89
Query: 62 TQVSIVIRDVNDNAPEFI-TANETTIPENSPLNTVVAALKAIDRDE---GQNSYVEYSII 117
++ I I D+NDN P F T+PE + + T V + A D D+ G ++ V YSI+
Sbjct: 90 SEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSIL 149
Query: 118 NSEATPFSLGPVDGLLRVAQK-LDREIKSNYTLEIKAKDRGEP--SKSSRTKFFIRLLD 173
+ FS+ G+++ A +DRE + Y + I+AKD G S T I L D
Sbjct: 150 QGQ-PYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207
Score = 78.9 bits (195), Expect = 2e-17
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 15/92 (16%)
Query: 293 SPYLALVNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGNSQTQGGTGDLF 352
+ L+ E T + + D D +G ++Y L GA GDLF
Sbjct: 4 ANQFFLLEEYTGSDYQY--VGKLHSDQDRG--DGSLKYILSGDGA-----------GDLF 48
Query: 353 RVNSTTGDIYLLKSLDREKQAEYLLTLQAMDS 384
+N TGDI K LDRE++ Y+L QA++
Sbjct: 49 IINENTGDIQATKRLDREEKPVYILRAQAVNR 80
Score = 77.7 bits (192), Expect = 7e-17
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 1 DNGRLEYSIVSGDDEEIFTINPSNGTLS-NLKHLDRETKSSYNLVVMATDMAKPPQKRLS 59
++ ++ YSI+ G F++ G + L ++DRE + Y +V+ A DM LS
Sbjct: 140 NSAKVVYSILQGQP--YFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGG-LS 196
Query: 60 STTQVSIVIRD 70
TT V+I + D
Sbjct: 197 GTTTVNITLTD 207
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 179 bits (455), Expect = 9e-55
Identities = 56/212 (26%), Positives = 87/212 (41%), Gaps = 16/212 (7%)
Query: 85 TIPENS--PLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-PFSLGPVDGLLRVAQKLDR 141
IPEN P V + DR EG + ++ + F + G + V + LDR
Sbjct: 9 LIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDR 68
Query: 142 EIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVL 201
E + Y L ++ D + + ++D+NDN PIF Y V E G TV+
Sbjct: 69 ETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVM 128
Query: 202 QVSATDLDD--GINGRVRYTIISGDDNHDL----TISEDNGLLRIAK---NLNYER--KA 250
+++A D DD N +RY I + I + G + L+ E
Sbjct: 129 RMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENP 188
Query: 251 QYSLTIQAEDCGGDTEERIRFDTATVSILVSD 282
+Y L I+A+D G TAT +I++ D
Sbjct: 189 KYELIIEAQDMAGLDVG--LTGTATATIVIDD 218
Score = 168 bits (427), Expect = 1e-50
Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 21/207 (10%)
Query: 186 YSASVPEN--ISVGATVLQVSATDLDDGINGRVRYTIISGDDNHDLTISEDNGLLRIAKN 243
+PEN V +V +D +G R+ + D I+E+ G + + +
Sbjct: 6 SPILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRT 65
Query: 244 LNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVFLHSPYLALVNENT 303
L+ E A Y L ++ D G + + ++V D NDN P+F PY+ V E +
Sbjct: 66 LDRETIATYQLYVETTDASG----KTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGS 121
Query: 304 LPGPSFRIMTVQAHDADSLP-FNGLVRYFLKDSGASSGNSQTQGGTGDLFRVNSTTGDIY 362
G + +M + A DAD N L+RY ++ + ++F ++ GDI
Sbjct: 122 PTGTT--VMRMTAFDADDPATDNALLRYNIR-------QQTPDKPSPNMFYIDPEKGDIV 172
Query: 363 LLKS---LDRE--KQAEYLLTLQAMDS 384
+ S LDRE + +Y L ++A D
Sbjct: 173 TVVSPALLDRETLENPKYELIIEAQDM 199
Score = 148 bits (376), Expect = 3e-43
Identities = 52/187 (27%), Positives = 77/187 (41%), Gaps = 18/187 (9%)
Query: 2 NGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSST 61
RL V D + F IN + G++S + LDRET ++Y L V TD + L
Sbjct: 35 KFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKT---LEGP 91
Query: 62 TQVSIVIRDVNDNAPEFI-TANETTIPENSPLNTVVAALKAIDRDE--GQNSYVEYSIIN 118
+ +++ D NDN P F + E SP T V + A D D+ N+ + Y+I
Sbjct: 92 VPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQ 151
Query: 119 SEATP-----FSLGPVDGLLRVAQ---KLDREIKSN--YTLEIKAKDRG--EPSKSSRTK 166
F + P G + LDRE N Y L I+A+D + +
Sbjct: 152 QTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTAT 211
Query: 167 FFIRLLD 173
I + D
Sbjct: 212 ATIVIDD 218
Score = 67.0 bits (164), Expect = 4e-13
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 1 DNGRLEYSIVSGDDE----EIFTINPSNG---TLSNLKHLDRET--KSSYNLVVMATDMA 51
DN L Y+I + +F I+P G T+ + LDRET Y L++ A DMA
Sbjct: 141 DNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMA 200
Query: 52 KPPQKRLSSTTQVSIVIRD 70
L+ T +IVI D
Sbjct: 201 GLD-VGLTGTATATIVIDD 218
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 175 bits (447), Expect = 7e-54
Identities = 66/208 (31%), Positives = 97/208 (46%), Gaps = 16/208 (7%)
Query: 82 NETTIPENS--PLNTVVAALKAIDRDEGQNSYVEYSIINSEA-TPFSLGPVDGLLRVAQK 138
N I E PL V L + N Y I A T F + DG + ++
Sbjct: 5 NRMHIREEIDSPLPHHVGKLTSSV----GNKNAMYIIEGESANTIFKVQGYDGDIYAFER 60
Query: 139 LDREIKSNYTLEIKAKDR-GEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVG 197
LDRE K+ Y L DR S +KF I++ D NDN PIF K ++ SVPE +G
Sbjct: 61 LDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLG 120
Query: 198 ATVLQVSATDLDD---GINGRVRYTIISGDDNHDLTISEDNGLLRIAKNLNYERKAQYSL 254
+V +V+A D DD + V Y II G++ T+ + + +L+ E ++ Y +
Sbjct: 121 TSVTKVTAEDADDPTVAGHATVTYQIIKGNE--YFTVDDSGVIFTARADLDRESQSAYEI 178
Query: 255 TIQAEDCGGDTEERIRFDTATVSILVSD 282
++A+D G T TATV I ++D
Sbjct: 179 IVKAKDALGLTG---ESSTATVIIRLTD 203
Score = 170 bits (432), Expect = 2e-51
Identities = 54/178 (30%), Positives = 77/178 (43%), Gaps = 8/178 (4%)
Query: 1 DNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSS 60
N Y I IF + +G + + LDRE K+ Y L D L
Sbjct: 29 GNKNAMYIIEGESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNRS--LEP 86
Query: 61 TTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDE---GQNSYVEYSI 116
++ I + D+NDNAP F+ ++PE S L T V + A D D+ ++ V Y I
Sbjct: 87 PSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQI 146
Query: 117 INSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDR-GEPSKSSRTKFFIRLLD 173
I F++ + LDRE +S Y + +KAKD G +SS IRL D
Sbjct: 147 IKGN-EYFTVDDSGVIFTARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203
Score = 158 bits (402), Expect = 4e-47
Identities = 50/199 (25%), Positives = 80/199 (40%), Gaps = 26/199 (13%)
Query: 189 SVPENI--SVGATVLQVSATDLDDGINGRVRYTIISGDDNHDLTISEDNGLLRIAKNLNY 246
+ E I + V +++++ N Y I N + +G + + L+
Sbjct: 8 HIREEIDSPLPHHVGKLTSSV----GNKNAMYIIEGESANTIFKVQGYDGDIYAFERLDR 63
Query: 247 ERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVFLHSPYLALVNENTLPG 306
E+KA+Y LT D + R + I VSDINDN P+F+ + V E + G
Sbjct: 64 EKKAEYELTAHIIDRRNN---RSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLG 120
Query: 307 PSFRIMTVQAHDADSLPF--NGLVRYFLKDSGASSGNSQTQGGTGDLFRVNSTTGDIYLL 364
S + V A DAD + V Y + GN + F V+ +
Sbjct: 121 TS--VTKVTAEDADDPTVAGHATVTYQI-----IKGN--------EYFTVDDSGVIFTAR 165
Query: 365 KSLDREKQAEYLLTLQAMD 383
LDRE Q+ Y + ++A D
Sbjct: 166 ADLDRESQSAYEIIVKAKD 184
Score = 65.0 bits (159), Expect = 1e-12
Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 16/86 (18%)
Query: 299 VNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGNSQTQGGTGDLFRVNSTT 358
+ E + + + N Y + +F+V
Sbjct: 9 IREEIDSPLPHHVGKLTSSVG-----NKNAMYII-----------EGESANTIFKVQGYD 52
Query: 359 GDIYLLKSLDREKQAEYLLTLQAMDS 384
GDIY + LDREK+AEY LT +D
Sbjct: 53 GDIYAFERLDREKKAEYELTAHIIDR 78
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 172 bits (437), Expect = 7e-52
Identities = 32/242 (13%), Positives = 65/242 (26%), Gaps = 36/242 (14%)
Query: 83 ETTIPENSPLNTVVAALKAI--DRDEGQNSYVEYSIINSEATP------FSLGPVDGLLR 134
+ + T + + A+ +E + + + + T + GLL
Sbjct: 9 WEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLY 68
Query: 135 VAQKLDREIKSNYTLE--------------IKAKDRGEPSKSSRTKFFIRLLDENDNNPI 180
+ + LD ++ + E + N + P
Sbjct: 69 LQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPA 128
Query: 181 ----------FDSKSYSASVPENISVGATVLQVSATDLDDGINGRVRYTIISGDDNHDLT 230
F S + EN G V Y ++ G+
Sbjct: 129 CSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGEGLP-FR 187
Query: 231 ISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVF 290
+ D+ + L+ E++ +Y L G E + V D +D+ P F
Sbjct: 188 SAPDSLEVSTRWALDREQREKYELVAVCTVHAGARE---EVVMVPFPVTVYDEDDSAPEF 244
Query: 291 LH 292
+
Sbjct: 245 EN 246
Score = 160 bits (407), Expect = 2e-47
Identities = 37/210 (17%), Positives = 57/210 (27%), Gaps = 28/210 (13%)
Query: 1 DNGRLEYSI-----VSGDDEEIFTINPSNGTLSNLKHLDRETKSSYN--------LVVMA 47
+ RL + + I G L + LD + + L V
Sbjct: 36 PSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYL 95
Query: 48 TDMAKPPQKR---LSSTTQVSIVIRDVNDNAPEFITAN-----------ETTIPENSPLN 93
P R + N + P + I EN P
Sbjct: 96 KVFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPG 155
Query: 94 TVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKA 153
T + V Y ++ E PF P + LDRE + Y L
Sbjct: 156 TFHQFRLLPVQFLCPQISVAYRLLEGEGLPFRSAPDSLEVSTRWALDREQREKYELVAVC 215
Query: 154 KDR-GEPSKSSRTKFFIRLLDENDNNPIFD 182
G + F + + DE+D+ P F+
Sbjct: 216 TVHAGAREEVVMVPFPVTVYDEDDSAPEFE 245
Score = 139 bits (351), Expect = 4e-39
Identities = 39/230 (16%), Positives = 72/230 (31%), Gaps = 42/230 (18%)
Query: 181 FDSKSYSASVPENISVGATVLQVSAT--DLDDGINGRVRYTI-----ISGDDNHDLTISE 233
F +Y + + + G +L V A ++ + R+ + +N+ + I E
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62
Query: 234 DNGLLRIAKNLNYERKAQYSLTIQAEDC----------GGDTEERIRFDTATVSILVSDI 283
D GLL + ++L++ + S+ + E + S
Sbjct: 63 DTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFF 122
Query: 284 NDNYPV----------FLHSPYLALVNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLK 333
N ++P F + + EN PG P V Y L
Sbjct: 123 NTSFPACSSLKPRELCFPETRPSFRIRENRPPGTF--HQFRLLPVQFLCP-QISVAYRL- 178
Query: 334 DSGASSGNSQTQGGTGDLFRVNSTTGDIYLLKSLDREKQAEYLLTLQAMD 383
G G FR + ++ +LDRE++ +Y L
Sbjct: 179 -----------LEGEGLPFRSAPDSLEVSTRWALDREQREKYELVAVCTV 217
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 120 bits (303), Expect = 1e-33
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 169 IRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGINGRVRYTIISGDDN-- 226
NDN+P F+ Y A + EN + G +LQ+ A DLD G+NG++ Y + ++
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61
Query: 227 HDLTISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDN 286
L + E +G L + ++ E Q T+ A D G + D ATV + + D NDN
Sbjct: 62 RLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPP----KTDKATVVLNIKDENDN 117
Query: 287 YP 288
P
Sbjct: 118 VP 119
Score = 117 bits (296), Expect = 2e-32
Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 68 IRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSE---ATP 123
NDN+P F + E + ENS T + L+A D D G N +EY +
Sbjct: 4 GSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRL 63
Query: 124 FSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNP 179
L G L V ++DRE + + A+DRG+P K+ + + + DENDN P
Sbjct: 64 LRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 88.3 bits (220), Expect = 1e-21
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 12/104 (11%)
Query: 280 VSDINDNYPVFLHSPYLALVNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASS 339
S NDN P F S Y A + EN+ PG I+ ++A D D NG + Y
Sbjct: 4 GSSGNDNSPRFEKSVYEADLAENSAPG--TPILQLRAADLDVGV-NGQIEYVF------- 53
Query: 340 GNSQTQGGTGDLFRVNSTTGDIYLLKSLDREKQAEYLLTLQAMD 383
L R++ T+G + +L +DRE+ + T+ A D
Sbjct: 54 --GAATESVRRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARD 95
Score = 75.2 bits (186), Expect = 5e-17
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 2 NGRLEYSIVSGDDE--EIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLS 59
NG++EY + + + ++ ++G LS L +DRE + VMA D +PP +
Sbjct: 46 NGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPP---KT 102
Query: 60 STTQVSIVIRDVNDNAP 76
V + I+D NDN P
Sbjct: 103 DKATVVLNIKDENDNVP 119
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 110 bits (278), Expect = 4e-30
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 9/119 (7%)
Query: 169 IRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGINGRVRYTI---ISGDD 225
NDN P+F +PEN VG +V+Q+ ATD D G N +RY ++
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61
Query: 226 NHDLTISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDIN 284
++ GL+ + ++L+ E A + +T+ A D ATV+I V+D+N
Sbjct: 62 KRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSS------TPARATVTINVTDVN 114
Score = 103 bits (259), Expect = 3e-27
Identities = 35/115 (30%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 66 IVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIIN----SE 120
NDN P F E IPEN+P+ T V L A D D G N+ + Y +
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61
Query: 121 ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDEN 175
F+L GL+ V + LDRE + + + + A D +R I + D N
Sbjct: 62 KRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSST--PARATVTINVTDVN 114
Score = 84.4 bits (210), Expect = 2e-20
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 280 VSDINDNYPVFLHSPYLALVNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASS 339
S NDN PVF + EN G ++ + A DAD N +RY
Sbjct: 4 GSSGNDNRPVFKEGQVEVHIPENAPVG--TSVIQLHATDADIGS-NAEIRYIF------- 53
Query: 340 GNSQTQGGTGDLFRVNSTTGDIYLLKSLDREKQAEYLLTLQAMD 383
+Q T LF +N+TTG I + +SLDRE+ A + +T+ A D
Sbjct: 54 -GAQVAPATKRLFALNNTTGLITVQRSLDREETAIHKVTVLASD 96
Score = 56.3 bits (137), Expect = 3e-10
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 2 NGRLEYSI---VSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRL 58
N + Y V+ + +F +N + G ++ + LDRE + + + V+A+D + P
Sbjct: 46 NAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTP---- 101
Query: 59 SSTTQVSIVIRDVN 72
+ V+I + DVN
Sbjct: 102 -ARATVTINVTDVN 114
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 101 bits (253), Expect = 2e-26
Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 7/112 (6%)
Query: 75 APEFITANETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-----PFSLGPV 129
+++ +PENS L I +N + YS+ A F + P+
Sbjct: 1 GSDWVI-PPINLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPI 58
Query: 130 DGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIF 181
G L V + LDRE+ + + L A D + I ++D NDN P F
Sbjct: 59 SGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 92.7 bits (231), Expect = 2e-23
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 189 SVPENISVGATVLQVSATDLDDGINGRVRYTIISGDDNHDL----TISEDNGLLRIAKNL 244
++PEN S G ++ N +RY++ + I+ +G L + K L
Sbjct: 10 NLPEN-SRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 68
Query: 245 NYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVF 290
+ E A++ L A D G+ E + + I V D+NDN P F
Sbjct: 69 DRELIARFHLRAHAVDINGNQVE----NPIDIVINVIDMNDNRPEF 110
Score = 88.5 bits (220), Expect = 7e-22
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 2 NGRLEYSI----VSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKR 57
N L YS+ IF INP +G LS K LDRE + ++L A D+
Sbjct: 33 NLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQ--- 89
Query: 58 LSSTTQVSIVIRDVNDNAPEF 78
+ + + I + D+NDN PEF
Sbjct: 90 VENPIDIVINVIDMNDNRPEF 110
Score = 65.0 bits (159), Expect = 2e-13
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 299 VNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGNSQTQGGTGDLFRVNSTT 358
+ EN+ GP + + N +RY + GA + +F +N +
Sbjct: 11 LPENS-RGPF--PQELVRIRSGRDK-NLSLRYSVTGPGADQPPT-------GIFIINPIS 59
Query: 359 GDIYLLKSLDREKQAEYLLTLQAMDS 384
G + + K LDRE A + L A+D
Sbjct: 60 GQLSVTKPLDRELIARFHLRAHAVDI 85
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 89.7 bits (223), Expect = 3e-22
Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 8/104 (7%)
Query: 85 TIPENS--PLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-----PFSLGPVDGLLRVAQ 137
+ E +A + + D E + + Y T F G L V
Sbjct: 18 ALREGEDLSKKNPIAKIHS-DLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTS 76
Query: 138 KLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIF 181
LDRE + L A D + + I++LD NDN P+F
Sbjct: 77 ILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVF 120
Score = 87.4 bits (217), Expect = 2e-21
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 1 DNGRLEYSI----VSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQK 56
++ Y ++ IF N G L+ LDRE + L A D
Sbjct: 42 RGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREETPFFLLTGYALDARGNN-- 99
Query: 57 RLSSTTQVSIVIRDVNDNAPEF 78
+ ++ I + D+NDN P F
Sbjct: 100 -VEKPLELRIKVLDINDNEPVF 120
Score = 85.8 bits (213), Expect = 9e-21
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 11/110 (10%)
Query: 189 SVPEN--ISVGATVLQVSATDLDDGINGRVRYTI----ISGDDNHDLTISEDNGLLRIAK 242
++ E +S + ++ +DL + ++ Y I+ ++D G L +
Sbjct: 18 ALREGEDLSKKNPIAKIH-SDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTS 76
Query: 243 NLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVFLH 292
L+ E + LT A D G+ E + I V DINDN PVF
Sbjct: 77 ILDREETPFFLLTGYALDARGNNVE----KPLELRIKVLDINDNEPVFTQ 122
Score = 66.6 bits (163), Expect = 9e-14
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 9/86 (10%)
Query: 299 VNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGNSQTQGGTGDLFRVNSTT 358
+ E I + + D + Y G + +F N T
Sbjct: 19 LREGEDLSKKNPIAKIHS-DLAEER-GLKITYKYTGKGITEP-------PFGIFVFNKDT 69
Query: 359 GDIYLLKSLDREKQAEYLLTLQAMDS 384
G++ + LDRE+ +LLT A+D+
Sbjct: 70 GELNVTSILDREETPFFLLTGYALDA 95
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 84.0 bits (208), Expect = 3e-20
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 189 SVPEN--ISVGATVLQVSATDLDDGINGRVRYTIISGDDNHDLTISEDNGLLRIAKNLNY 246
+PEN V +V +D +G R+ + D I+E+ G + + + L+
Sbjct: 9 LIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDR 68
Query: 247 ERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSD 282
E A Y L ++ D G T E + ++V D
Sbjct: 69 ETIATYQLYVETTDASGKTLE----GPVPLEVIVID 100
Score = 80.9 bits (200), Expect = 4e-19
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Query: 85 TIPENS--PLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-PFSLGPVDGLLRVAQKLDR 141
IPEN P V + DR EG + ++ + F + G + V + LDR
Sbjct: 9 LIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDR 68
Query: 142 EIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 173
E + Y L ++ D + + ++D
Sbjct: 69 ETIATYQLYVETTDASGKTLEGPVPLEVIVID 100
Score = 73.9 bits (182), Expect = 1e-16
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 2 NGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSST 61
RL V D + F IN + G++S + LDRET ++Y L V TD + L
Sbjct: 35 KFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKT---LEGP 91
Query: 62 TQVSIVIRD 70
+ +++ D
Sbjct: 92 VPLEVIVID 100
Score = 61.6 bits (150), Expect = 3e-12
Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 12/86 (13%)
Query: 299 VNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGNSQTQGGTGDLFRVNSTT 358
+ EN + V D + D FR+N T
Sbjct: 10 IPENQRQPFPRDVGKVVDSDRPE-GSKFRLTGKGVD-----------QDPKGTFRINENT 57
Query: 359 GDIYLLKSLDREKQAEYLLTLQAMDS 384
G + + ++LDRE A Y L ++ D+
Sbjct: 58 GSVSVTRTLDRETIATYQLYVETTDA 83
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 80.5 bits (199), Expect = 5e-19
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Query: 85 TIPENS--PLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-PFSLGPVDGLLRVAQKLDR 141
+IPEN P +V + DR G + ++ E F + G + V + LDR
Sbjct: 8 SIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDR 67
Query: 142 EIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 173
E +Y L+++ D + I ++D
Sbjct: 68 EAIPSYQLQVETTDENGKTIEGPVDLEILVID 99
Score = 80.1 bits (198), Expect = 8e-19
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 6/99 (6%)
Query: 186 YSASVPEN--ISVGATVLQVSATDLDDGINGRVRYTIISGDDNHDLTISEDNGLLRIAKN 243
S S+PEN I V +V +D G ++ + + I+E++G + + K
Sbjct: 5 PSISIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKA 64
Query: 244 LNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSD 282
L+ E Y L ++ D G + + ILV D
Sbjct: 65 LDREAIPSYQLQVETTDENG----KTIEGPVDLEILVID 99
Score = 71.6 bits (176), Expect = 7e-16
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 2 NGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSST 61
+L V + + IF IN ++G +S K LDRE SY L V TD +
Sbjct: 34 KIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQLQVETTDENGKT---IEGP 90
Query: 62 TQVSIVIRD 70
+ I++ D
Sbjct: 91 VDLEILVID 99
Score = 64.7 bits (158), Expect = 2e-13
Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 12/86 (13%)
Query: 299 VNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGNSQTQGGTGDLFRVNSTT 358
+ EN + V D + D +F++N +
Sbjct: 9 IPENQRIPFPKIVGRVVVSDRIP-GSKIKLYGKGVD-----------QEPKGIFKINENS 56
Query: 359 GDIYLLKSLDREKQAEYLLTLQAMDS 384
G++ + K+LDRE Y L ++ D
Sbjct: 57 GEVSVTKALDREAIPSYQLQVETTDE 82
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 79.8 bits (197), Expect = 7e-19
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 6/100 (6%)
Query: 185 SYSASVPEN--ISVGATVLQVSATDLDDGINGRVRYTIISGDDNHDLTISEDNGLLRIAK 242
+ +PEN +V +V ++ +G R+ + D I+E +G + + +
Sbjct: 4 ATPILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTR 63
Query: 243 NLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSD 282
L+ E A Y L ++ D G +I + I V D
Sbjct: 64 PLDREAIANYELEVEVTDLSG----KIIDGPVRLDISVID 99
Score = 77.1 bits (190), Expect = 8e-18
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Query: 85 TIPENS--PLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-PFSLGPVDGLLRVAQKLDR 141
IPEN P V + + EG + ++ + F + + G + V + LDR
Sbjct: 8 LIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDR 67
Query: 142 EIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 173
E +NY LE++ D + I ++D
Sbjct: 68 EAIANYELEVEVTDLSGKIIDGPVRLDISVID 99
Score = 70.5 bits (173), Expect = 2e-15
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 2 NGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSST 61
RL V D + IF IN +G +S + LDRE ++Y L V TD++ +
Sbjct: 34 KFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEVTDLSGKI---IDGP 90
Query: 62 TQVSIVIRD 70
++ I + D
Sbjct: 91 VRLDISVID 99
Score = 59.7 bits (145), Expect = 1e-11
Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 12/91 (13%)
Query: 294 PYLALVNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGNSQTQGGTGDLFR 353
L+ EN P + V + + D +FR
Sbjct: 4 ATPILIPENQRPPFPRSVGKVIRSEGTE-GAKFRLSGKGVD-----------QDPKGIFR 51
Query: 354 VNSTTGDIYLLKSLDREKQAEYLLTLQAMDS 384
+N +GD+ + + LDRE A Y L ++ D
Sbjct: 52 INEISGDVSVTRPLDREAIANYELEVEVTDL 82
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 79.3 bits (196), Expect = 1e-18
Identities = 25/106 (23%), Positives = 37/106 (34%), Gaps = 7/106 (6%)
Query: 75 APEFI-TANETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-----PFSLGP 128
P + PEN L I ++ + V YSI A F +
Sbjct: 1 GPLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIER 59
Query: 129 VDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDE 174
G L+V + LDRE + YTL A + + I + D+
Sbjct: 60 ETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQ 105
Score = 77.8 bits (192), Expect = 5e-18
Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 9/108 (8%)
Query: 179 PIFDSKSYSASVPENISVGATVLQVSATDLDDGINGRVRYTIISGDDNHDL----TISED 234
P+ S PEN G + + G+V Y+I + I +
Sbjct: 2 PLGSWVIPPISCPEN-EKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 60
Query: 235 NGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSD 282
G L++ + L+ ER A Y+L A G+ E D + I V+D
Sbjct: 61 TGWLKVTEPLDRERIATYTLFSHAVSSNGNAVE----DPMEILITVTD 104
Score = 68.2 bits (167), Expect = 2e-14
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 1 DNGRLEYSIVSGDDEE----IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQK 56
G++ YSI + +F I G L + LDRE ++Y L A
Sbjct: 34 KEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNA-- 91
Query: 57 RLSSTTQVSIVIRD 70
+ ++ I + D
Sbjct: 92 -VEDPMEILITVTD 104
Score = 67.0 bits (164), Expect = 3e-14
Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 11/97 (11%)
Query: 288 PVFLHSPYLALVNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGNSQTQGG 347
P+ EN ++ ++++ G V Y + GA +
Sbjct: 2 PLGSWVIPPISCPENEKGPFPKNLVQIKSNKDK----EGKVFYSITGQGADTPPV----- 52
Query: 348 TGDLFRVNSTTGDIYLLKSLDREKQAEYLLTLQAMDS 384
+F + TG + + + LDRE+ A Y L A+ S
Sbjct: 53 --GVFIIERETGWLKVTEPLDRERIATYTLFSHAVSS 87
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 73.6 bits (181), Expect = 1e-16
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 1 DNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSS 60
+G ++Y + +FTI+ + G + ++ LDRE +S Y L A D +
Sbjct: 32 GDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALDRRTGRP--MEP 89
Query: 61 TTQVSIVIRD 70
++ I I+D
Sbjct: 90 ESEFIIKIQD 99
Score = 73.6 bits (181), Expect = 1e-16
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Query: 189 SVPENIS-VGATVLQVSATDLDDGINGRVRYTIISGDDNHDLTISEDNGLLRIAKNLNYE 247
V E + + +D+D G +G ++Y + TI + G + + L+ E
Sbjct: 9 FVLEEYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDRE 67
Query: 248 RKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSD 282
++QY+L QA D R + I + D
Sbjct: 68 ERSQYTLRAQALDRRTG---RPMEPESEFIIKIQD 99
Score = 69.3 bits (170), Expect = 5e-15
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 15/91 (16%)
Query: 294 PYLALVNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGNSQTQGGTGDLFR 353
++ E T P + D D +G ++Y L + G G +F
Sbjct: 6 NQFFVLEEYTGTDPL--YVGKLHSDMDR--GDGSIKYIL-----------SGEGAGIVFT 50
Query: 354 VNSTTGDIYLLKSLDREKQAEYLLTLQAMDS 384
++ TTGDI+ ++ LDRE++++Y L QA+D
Sbjct: 51 IDDTTGDIHAIQRLDREERSQYTLRAQALDR 81
Score = 68.2 bits (167), Expect = 1e-14
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 82 NETTIPENS-PLNTVVAALKAIDRDEGQNSYVEYSIINSEA-TPFSLGPVDGLLRVAQKL 139
N+ + E + + D D G + ++Y + A F++ G + Q+L
Sbjct: 6 NQFFVLEEYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRL 64
Query: 140 DREIKSNYTLEIKAKDRG-EPSKSSRTKFFIRLLD 173
DRE +S YTL +A DR ++F I++ D
Sbjct: 65 DREERSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus}
PDB: 2a4c_A
Length = 98
Score = 72.5 bits (178), Expect = 3e-16
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 1 DNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSS 60
+ +++Y + IF IN G + +K LDRE K+ Y L A D L
Sbjct: 31 GSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNK--PLEP 88
Query: 61 TTQVSIVIRD 70
++ I ++D
Sbjct: 89 PSEFIIKVQD 98
Score = 70.9 bits (174), Expect = 1e-15
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 187 SASVPENISV-GATVLQVSATDLDDGINGRVRYTIISGDDNHDLTISEDNGLLRIAKNLN 245
V E S ++ TDLD G + +++Y + I++ G + K L+
Sbjct: 6 QMFVLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLD 64
Query: 246 YERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSD 282
E KA+Y+LT QA D + + + I V D
Sbjct: 65 REEKAEYTLTAQAVDFETN---KPLEPPSEFIIKVQD 98
Score = 67.1 bits (164), Expect = 3e-14
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 15/84 (17%)
Query: 301 ENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGNSQTQGGTGDLFRVNSTTGD 360
E + P P + V D P + ++Y L GA G +F++N TGD
Sbjct: 12 EFSGPEP----ILVGRLHTDLDPGSKKIKYILSGDGA-----------GTIFQINDITGD 56
Query: 361 IYLLKSLDREKQAEYLLTLQAMDS 384
I+ +K LDRE++AEY LT QA+D
Sbjct: 57 IHAIKRLDREEKAEYTLTAQAVDF 80
Score = 60.9 bits (148), Expect = 5e-12
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 82 NETTIPENS--PLNTVVAALKAIDRDEGQNSYVEYSIINSEA-TPFSLGPVDGLLRVAQK 138
N+ + E P +V L D D G ++Y + A T F + + G + ++
Sbjct: 5 NQMFVLEEFSGPEPILVGRLHT-DLDPGSKK-IKYILSGDGAGTIFQINDITGDIHAIKR 62
Query: 139 LDREIKSNYTLEIKAKDR-GEPSKSSRTKFFIRLLD 173
LDRE K+ YTL +A D ++F I++ D
Sbjct: 63 LDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 1e-06
Identities = 52/349 (14%), Positives = 115/349 (32%), Gaps = 107/349 (30%)
Query: 9 IVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAK---PPQKRLSSTTQVS 65
+S +++ + TL+ E KS L++ D P + ++ ++S
Sbjct: 280 FLSAATTTHISLDHHSMTLT-----PDEVKS---LLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 66 IV---IRDVNDNAPEFITANETTIPENSPLNTVV-AALKAIDRDEGQNSYVEYSIINSEA 121
I+ IRD T + L T++ ++L ++ E + + S+
Sbjct: 332 IIAESIRD------GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV----- 380
Query: 122 TPFSLGPVDGLL--RVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNP 179
F P + + + ++ + + + K S L+++
Sbjct: 381 --F---PPSAHIPTILLSLIWFDVIKSDVMVVVNKLH---KYS--------LVEK----- 419
Query: 180 IFDSKSYSASVPENISVGATVLQVSAT---DLDDGINGRV--RYTIISGDDNHDLTISED 234
K + S+P + + + + ++ + Y I D+ DL
Sbjct: 420 --QPKESTISIPS--------IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 235 NGL--------LRIAKN-----------LNY---ERKAQYSLTIQAEDCGG---DT---- 265
+ L+ ++ L++ E+K ++ T A + G +T
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST--AWNASGSILNTLQQL 527
Query: 266 ---EERIRFDTATVSILVSDINDNYP----VFLHSPY-----LALVNEN 302
+ I + LV+ I D P + S Y +AL+ E+
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED 576
Score = 49.5 bits (117), Expect = 1e-06
Identities = 64/436 (14%), Positives = 127/436 (29%), Gaps = 108/436 (24%)
Query: 5 LEYSIVSGDDEE----IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSS 60
+++ I+S D +F S K ++ + +Y + M+ + Q + +
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL-MSPIKTEQRQPSMMT 109
Query: 61 TTQVSIVIRDVNDNAPEFITANETTIPENSPLNTVVAALK-------------------- 100
+ R NDN F N + P + AL
Sbjct: 110 RMYIEQRDRLYNDN-QVFAKYN---VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 101 -AID--RDEGQNSYVEYSI----INSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKA 153
A+D +++ I + + +P + +L + QKL +I N+T
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSP------ETVLEMLQKLLYQIDPNWT----- 214
Query: 154 KDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSY-----------SASVPENISVGATVLQ 202
SS K I + + SK Y +A ++ +L
Sbjct: 215 ---SRSDHSSNIKLRIHSIQAELRR-LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL- 269
Query: 203 VSATDLD--DGINGRVRYTIISGDDNHDLTISEDNGLLRIAKNLNYERKAQYSLTIQAED 260
++ D ++ I + LT E LL K L+ + L +
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--LKYLDCRPQ---DLPREV-- 322
Query: 261 CGGD-----------TEERIRFDT-------ATVSILVSDINDNYPVFLHSPY--LALVN 300
+ + +D +I+ S +N P + L++
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 301 ENT-LPGPSFRIMTVQAHDADSLPF-NGLVRYFLKDSGASSGNSQTQGGTGDLFRVNSTT 358
+ +P ++ +D + N L +Y L + +
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES----------TISIP--- 429
Query: 359 GDIYLLKSLDREKQAE 374
IYL + E +
Sbjct: 430 -SIYLELKVKLENEYA 444
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 3e-06
Identities = 48/263 (18%), Positives = 70/263 (26%), Gaps = 101/263 (38%)
Query: 183 SKSYSASVPENISVGATVLQ-------VSATD---LDDGINGRV----RY---------- 218
S + VP A+ LQ T+ DD ++
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEP 74
Query: 219 -------------------TIISGDDNHDLTIS---EDNGLLRIAKNL--NY-------- 246
+ G+D H L E++ L K L NY
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 247 --ERKAQYSLTIQAEDCG-----------GDTEE-----RIRFDT-------------AT 275
K S +A G G+T++ R + T T
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET 194
Query: 276 VSILVSDINDNYPVFLHS-PYLA-LVNENTLPGPSFRIMTVQAHDADSLPFNGLV---RY 330
+S L+ D VF L L N + P + S P G++ Y
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY-----LLSIPISCPLIGVIQLAHY 249
Query: 331 --FLKDSGASSGN--SQTQGGTG 349
K G + G S +G TG
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATG 272
Score = 45.8 bits (108), Expect = 2e-05
Identities = 68/455 (14%), Positives = 126/455 (27%), Gaps = 177/455 (38%)
Query: 14 DE--EIFT---------INPSNGTLSNLKHLDRETKSSYNLVV-----MATDMAKPPQKR 57
+E +++ I S TLS L + + + + + P +
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 58 LSST---------TQVS--IVIRDVNDNAP-EF--ITANETTIPENSPLNTVVAAL---K 100
L S Q++ +V + P E T + +V A+ +
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG-----LVTAVAIAE 285
Query: 101 AIDRDE-GQNS--YVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIK----A 153
+ + + F +G +R E N +L +
Sbjct: 286 TDSWESFFVSVRKAITVL--------FFIG-----VR-CY----EAYPNTSLPPSILEDS 327
Query: 154 KDRGE--PS-----KSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSAT 206
+ E PS + + +++ N + +P +++S
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYVNK-TN----------SHLPAG-----KQVEIS-- 369
Query: 207 DLDDGINGRVRYTIISGDDNHDLTISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTE 266
L +NG + ++SG + L + L RK +A G +
Sbjct: 370 -L---VNGA-KNLVVSGP-------PQS--LYGLNLTL---RK------AKAPS--GLDQ 404
Query: 267 ERIRFDTATVSILVSDINDNYPVFL------HSPYLA---------LVNEN-TLPGPSFR 310
RI F + FL HS L LV N + +
Sbjct: 405 SRIPFSERKLKFSNR--------FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 311 I---MTVQAHD----ADSLPFNGLVRYFLKDS-------------------GASSG---- 340
I T D + S+ +V ++ G +SG
Sbjct: 457 IPVYDTFDGSDLRVLSGSISER-IVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVL 515
Query: 341 NSQTQGGTGDLFRVNSTTGDIYLLKSLDREKQAEY 375
+ + GTG RV I + +LD +Y
Sbjct: 516 THRNKDGTG--VRV------I-VAGTLDINPDDDY 541
Score = 36.2 bits (83), Expect = 0.019
Identities = 34/200 (17%), Positives = 56/200 (28%), Gaps = 75/200 (37%)
Query: 153 AK---DRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSATDLD 209
A+ +R + + + +LD NNP+ + T
Sbjct: 1642 AQDVWNRAD--NHFKDTYGFSILDIVINNPV-----------------------NLTIHF 1676
Query: 210 DGING---RVRYTIISGDDNHDLTISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTE 266
G G R Y+ + + D + + +I K +N E Y+ + T+
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTE----KIFKEIN-EHSTSYTFRSEKGLLS-ATQ 1730
Query: 267 ERIRFDT----ATVSI-LVSDIND--NYP---VFL-HS--PYLALVNENTLPGPSFRIMT 313
F T + D+ P F HS Y AL
Sbjct: 1731 ----F-TQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAAL--------------- 1770
Query: 314 VQAHDADSLPFNG---LVRY 330
A AD + +V Y
Sbjct: 1771 --ASLADVMSIESLVEVVFY 1788
Score = 32.3 bits (73), Expect = 0.31
Identities = 24/111 (21%), Positives = 32/111 (28%), Gaps = 45/111 (40%)
Query: 3 GRLEYSIVSGDDEE-----IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKR 57
G V D+ + INP S +E VV +R
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINPGRVAAS----FSQEALQY---VV----------ER 1832
Query: 58 LSSTTQ--VSIVIRDVNDNAPEFITANETTIPENSPLNTVVAA--LKAIDR 104
+ T V IV N N N+ VAA L+A+D
Sbjct: 1833 VGKRTGWLVEIV----NYNVE-----NQ----------QYVAAGDLRALDT 1864
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Mus musculus}
Length = 125
Score = 44.6 bits (106), Expect = 5e-06
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 9 IVSGDDEEIFTINPSNGTLSNLKHLDRE------TKSSYNLVVMATDMAKPPQKRLSSTT 62
I+S ++++ + +G L + LDRE + V+ P Q
Sbjct: 48 ILSKGNKQLLQLEQKSGNLLLKEKLDREELCGSTNPCILHFQVLLKS---PVQ-----FI 99
Query: 63 QVSIVIRDVNDNAPEFITANETTI 86
Q I ++DVND+APEF+ +E+
Sbjct: 100 QGEIQLQDVNDHAPEFME-DESGP 122
Score = 38.0 bits (89), Expect = 0.001
Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 18/113 (15%)
Query: 189 SVPENISVGATVLQVSATDL----DDGINGRVRYTIISGDDNHDLTISEDNGLLRIAKNL 244
SV E G+ V + A DL + I + I+S + L + + +G L + + L
Sbjct: 16 SVLEETDRGSLVGNL-AKDLGLSLRELITRGAQ--ILSKGNKQLLQLEQKSGNLLLKEKL 72
Query: 245 NYE----RKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVFLHS 293
+ E L Q + ++F + + D+ND+ P F+
Sbjct: 73 DREELCGSTNPCILHFQV-----LLKSPVQFIQGEIQLQ--DVNDHAPEFMED 118
Score = 33.8 bits (78), Expect = 0.026
Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 15/106 (14%)
Query: 85 TIPENSPLNTVVAAL-KAIDRDEGQNSYVEYSII-NSEATPFSLGPVDGLLRVAQKLDRE 142
++ E + ++V L K + + I+ L G L + +KLDRE
Sbjct: 16 SVLEETDRGSLVGNLAKDLGLSLRELITRGAQILSKGNKQLLQLEQKSGNLLLKEKLDRE 75
Query: 143 ----IKSNYTLEIKAKDRGEPSKSSRTKFF---IRLLDENDNNPIF 181
+ L + S +F I+L D ND+ P F
Sbjct: 76 ELCGSTNPCILHFQV------LLKSPVQFIQGEIQLQDVNDHAPEF 115
Score = 30.7 bits (70), Expect = 0.28
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 345 QGGTGDLFRVNSTTGDIYLLKSLDRE----KQAEYLLTLQAM 382
G L ++ +G++ L + LDRE +L Q +
Sbjct: 50 SKGNKQLLQLEQKSGNLLLKEKLDREELCGSTNPCILHFQVL 91
>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell
adhesion; NMR {Mus musculus} SCOP: b.1.6.1
Length = 159
Score = 39.8 bits (92), Expect = 4e-04
Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 7/98 (7%)
Query: 173 DENDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGINGRVRYTIISGDDNHDLTIS 232
+ F YSA +P+++ G +L V ++ + +V+Y + D +
Sbjct: 28 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNR--KRKVQYES---SEPADFKVD 82
Query: 233 EDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIR 270
ED G + ++ + Q I A+D + ++
Sbjct: 83 ED-GTVYAVRSFPLTAE-QAKFLIYAQDKETQEKWQVA 118
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin,
cell adhesion; NMR {Mus musculus}
Length = 103
Score = 36.0 bits (84), Expect = 0.003
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 14/72 (19%)
Query: 9 IVSGDDEEIFTINPSNGTLSNLKHLDRE------TKSSYNLVVMATDMAKPPQKRLSSTT 62
+ S D ++ +N NG L +DRE + S +L V+ P Q
Sbjct: 40 VASKDRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDR---PLQ-----VF 91
Query: 63 QVSIVIRDVNDN 74
V + +RD+NDN
Sbjct: 92 HVEVEVRDINDN 103
Score = 31.4 bits (72), Expect = 0.12
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 18/106 (16%)
Query: 189 SVPENISVGATVLQVSATDLDDGI----NGRVRYTIISGDDNHDLTISEDNGLLRIAKNL 244
S+PE G V ++ A DL + R + S D L ++ NG+L + +
Sbjct: 8 SIPEEAKHGTFVGRI-AQDLGLELTELVPRLFR--VASKDRGDLLEVNLQNGILFVNSRI 64
Query: 245 NYE----RKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDN 286
+ E R A+ S+ ++ + ++ V + DINDN
Sbjct: 65 DREELCGRSAECSIHLEV-----IVDRPLQVFHVEVEVR--DINDN 103
Score = 30.6 bits (70), Expect = 0.24
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 85 TIPENSPLNTVVAAL-KAIDRDEGQNSYVEYSII-NSEATPFSLGPVDGLLRVAQKLDRE 142
+IPE + T V + + + + + + + + +G+L V ++DRE
Sbjct: 8 SIPEEAKHGTFVGRIAQDLGLELTELVPRLFRVASKDRGDLLEVNLQNGILFVNSRIDRE 67
Score = 29.9 bits (68), Expect = 0.36
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 345 QGGTGDLFRVNSTTGDIYLLKSLDRE----KQAEYLLTLQAM 382
GDL VN G +++ +DRE + AE + L+ +
Sbjct: 42 SKDRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVI 83
>2f9z_C Protein (chemotaxis methylation protein); bacterial chemotaxis,
signal transduction, receptor deamidas aspartyl
phosphatase, protein complex; 2.40A {Thermotoga
maritima} SCOP: d.194.1.3
Length = 159
Score = 29.3 bits (66), Expect = 1.1
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 250 AQYSLTIQAEDCGGDTEERIRFDTATVSILVSDIN 284
+ + + AED GG+ + ++ T +LV +
Sbjct: 115 KDFGIKLLAEDTGGNRARSVEYNIETGKLLVRKVG 149
>1agr_E RGS4; GI-alpha-1, hydrolase, signal transduction, complex (signal
transduction/regulator), GTP-binding, GTPase activating
protein; HET: GDP CIT; 2.80A {Rattus norvegicus} SCOP:
a.91.1.1 PDB: 1ezt_A 1ezy_A
Length = 205
Score = 29.4 bits (65), Expect = 1.5
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 271 FDTATVSILVSDINDNYPVFLHSP-YLALVNENTLPGPSFRIMTVQAHDADSLP 323
FD A I D+Y FL S YL L N ++ + A +P
Sbjct: 149 FDEAQKKIFNLMEKDSYRRFLKSRFYLDLTNPSSCGAEKQKGAKSSADCTSLVP 202
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 28.9 bits (65), Expect = 2.1
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 217 RYTIISGDDNHDLTIS----EDNGLLR-IAKNLNYERKAQYSLTIQAE 259
+Y + S H LT+ ED G+ IA N E + L +QA
Sbjct: 53 KYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQAT 100
>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease,
intracellular proteinase regulat; HET: CSX 1PE; 1.56A
{Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A*
Length = 327
Score = 28.8 bits (65), Expect = 3.0
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 174 ENDNNPIFDSKSYSASVPENISVGAT 199
E D + +Y A+ E I+VGA
Sbjct: 184 EGDGREDTNEFAYPAAYNEVIAVGAV 209
>3bdr_A YCF58 protein; X-RAY, NESG, Q8DI91, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 2.80A {Synechococcus elongatus}
Length = 190
Score = 28.2 bits (62), Expect = 3.3
Identities = 17/113 (15%), Positives = 36/113 (31%), Gaps = 2/113 (1%)
Query: 161 KSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGINGRVRYTI 220
+S +++ I LL +D I + Y + + ++ G
Sbjct: 33 ESGKSQLTIELLSVDDPAVIALCQQYDMDPAWAVCGARVSWDGTMEWDNEKHEGSTVLVP 92
Query: 221 ISGDDNHD--LTISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRF 271
I + + E + + + +LT+ E +EER+ F
Sbjct: 93 IMDQGSRMEGKLLREMGYAEKAPVAGRFSMGSDGALTLITEYETIYSEERLWF 145
>4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase,
patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A
Length = 360
Score = 28.6 bits (64), Expect = 3.5
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 175 NDNNPIFDSKSYSASVPENISVGAT 199
N++N +S A +P ++VGA
Sbjct: 226 NNSN---ESWCLPAVLPGTLAVGAA 247
>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase;
1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A
2zwo_A
Length = 395
Score = 28.6 bits (64), Expect = 3.7
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 175 NDNNPIFDSKSYSASVPENISVGAT 199
N+ S SY A+ PE I+VGA
Sbjct: 261 NEGA---PSPSYPAAYPEVIAVGAI 282
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 26.5 bits (59), Expect = 5.7
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 213 NGRVRYTIISGDDNHDLTIS----EDNGLLRI-AKNLNYERKAQYSLTIQA 258
+ R+ I + DD L I +D GL + N A ++ I++
Sbjct: 49 QEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 26.5 bits (59), Expect = 5.7
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 217 RYTIISGDDNHDLTIS----EDNGLLR-IAKNLNYERKAQYSLTIQA 258
+Y I D L + D+G R N E + L ++
Sbjct: 48 KYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKG 94
>1fqi_A RGS9, regulator of G-protein signaling 9; phototransduction, ROD,
GAP, signaling protein; 1.94A {Bos taurus} SCOP:
a.91.1.1 PDB: 1fqj_B* 1fqk_B*
Length = 147
Score = 26.9 bits (59), Expect = 7.1
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 271 FDTATVSILVSDINDNYPVFLHSP-YLALVNENTLP 305
D A I + D+Y +L SP Y ++ + P
Sbjct: 110 LDAAQTHIYMLMKKDSYARYLKSPIYKEMLAKAIEP 145
>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces
vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E
Length = 279
Score = 27.5 bits (62), Expect = 7.6
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 3/25 (12%)
Query: 175 NDNNPIFDSKSYSASVPENISVGAT 199
N N + +Y A I+V +T
Sbjct: 163 NAGN---TAPNYPAYYSNAIAVAST 184
>1cmz_A Protein (GAIP (G-alpha interacting) protein); RGS, regulator of G
protein, signaling protein regulation; NMR {Homo
sapiens} SCOP: a.91.1.1
Length = 152
Score = 26.9 bits (59), Expect = 8.5
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 271 FDTATVSILVSDINDNYPVFLHSP-YLALVNE 301
FD A + I D+YP FL SP Y AL+
Sbjct: 110 FDDAQLQIYTLMHRDSYPRFLSSPTYRALLPW 141
>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A
{Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A
2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A
Length = 320
Score = 27.3 bits (61), Expect = 8.8
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 175 NDNNPIFDSKSYSASVPENISVGAT 199
N+ S SY A+ PE I+VGA
Sbjct: 186 NEGA---PSPSYPAAYPEVIAVGAI 207
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.131 0.359
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,526,027
Number of extensions: 325424
Number of successful extensions: 1187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 717
Number of HSP's successfully gapped: 163
Length of query: 384
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 289
Effective length of database: 4,049,298
Effective search space: 1170247122
Effective search space used: 1170247122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.0 bits)