RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13120
(384 letters)
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 74.3 bits (181), Expect = 5e-17
Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
Query: 175 NDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGINGR-VRYTIISGDDNHDLTISE 233
NDN PIFD K+Y+A VPEN +G V ++S TDLD I ++ I+
Sbjct: 2 NDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITT 60
Query: 234 D----NGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDI 283
D G+L AK L++E + QY L I E+ + TATV++ V D+
Sbjct: 61 DPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPL-PTSTATVTVTVEDV 113
Score = 55.4 bits (132), Expect = 2e-10
Identities = 25/112 (22%), Positives = 37/112 (33%), Gaps = 11/112 (9%)
Query: 72 NDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEAT------PF 124
NDNAP F +PEN V L D D +
Sbjct: 2 NDNAPIFDPKTYTALVPENEI-GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITT 60
Query: 125 SLGPVDGLLRVAQKLDREIKSNYTLEIKAKD---RGEPSKSSRTKFFIRLLD 173
G+L A+ LD E++ Y L+I ++ P +S + + D
Sbjct: 61 DPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVED 112
Score = 45.0 bits (105), Expect = 9e-07
Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 10/101 (9%)
Query: 284 NDNYPVFLHSPYLALVNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGNSQ 343
NDN P+F Y ALV EN F + + D D + +
Sbjct: 2 NDNAPIFDPKTYTALVPENE---IGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNI 58
Query: 344 TQGGTGDLFRVNSTTGDIYLLKSLDREKQAEYLLTLQAMDS 384
T S G + K LD E + +Y+L + ++
Sbjct: 59 T-------TDPESNQGILTTAKGLDFELRKQYVLQITVENA 92
Score = 43.5 bits (101), Expect = 4e-06
Identities = 13/54 (24%), Positives = 22/54 (40%)
Query: 18 FTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDV 71
+ G L+ K LD E + Y L + + +ST V++ + DV
Sbjct: 60 TDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV 113
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 71.9 bits (175), Expect = 3e-16
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 9/112 (8%)
Query: 176 DNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGINGRVRYTIISGDDNHDLTISEDN 235
+ P F V E++S G ++ + A D D + I D LT+++DN
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQK-LSYFIGNDPARWLTVNKDN 59
Query: 236 GLLRIAKNLNYE----RKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDI 283
G++ NL+ E + Y++ + D G T T+ + V D+
Sbjct: 60 GIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSV----GTGTGTLILHVLDV 107
Score = 70.8 bits (172), Expect = 8e-16
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 5/106 (4%)
Query: 73 DNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDG 131
+ AP F+ A + E+ + +L A D D+ Q + Y I N A ++ +G
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNG 60
Query: 132 LLRVAQKLDREIK----SNYTLEIKAKDRGEPSKSSRTKFFIRLLD 173
++ LDRE + + YT+ + D G + + +LD
Sbjct: 61 IVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLD 106
Score = 46.9 bits (110), Expect = 2e-07
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 7 YSIVSGDDEEIFTINPSNGTLSNLKHLDRETK----SSYNLVVMATDMAKPPQKRLSSTT 62
+ D T+N NG ++ +LDRE++ ++Y ++++ TD + T
Sbjct: 42 SYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSV---GTGTG 98
Query: 63 QVSIVIRDV 71
+ + + DV
Sbjct: 99 TLILHVLDV 107
Score = 43.8 bits (102), Expect = 2e-06
Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 19/104 (18%)
Query: 285 DNYPVFLHSPYLALVNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGNSQT 344
+ P F+ + V+E+ G +I+++ A D D L + D
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRG--EKIISLVAQDPDKQQIQKLSYFIGND---------- 48
Query: 345 QGGTGDLFRVNSTTGDIYLLKSLDRE----KQAEYLLTLQAMDS 384
VN G + +LDRE K Y + + D
Sbjct: 49 ---PARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDD 89
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 70.5 bits (171), Expect = 1e-15
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 174 ENDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGI---NGRVRYTIISGDDNHDLT 230
+NDN P F + SV E + G V+ VSATD DD I NG + Y+I+ D +
Sbjct: 1 QNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIP 60
Query: 231 -----ISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSD 282
E + I L+ E+ +Y+LT+QA D G I ++D
Sbjct: 61 NLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAG----LSVEGKAIIQITD 113
Score = 62.0 bits (149), Expect = 1e-12
Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 10/112 (8%)
Query: 72 NDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEG---QNSYVEYSIINSEATPFSLG 127
NDN P+F ++ E T V A+ A D D+ N + YSI+ +
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPN 61
Query: 128 ------PVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 173
+ + LDRE YTL ++A D S K I++ D
Sbjct: 62 LFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITD 113
Score = 47.7 bits (112), Expect = 1e-07
Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
Query: 284 NDNYPVFLHSPYLALVNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGNSQ 343
NDN P F + V E PG ++ D + NG++ Y +
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPN 61
Query: 344 TQGGTGDLFRVNSTTGDIYLLKS-LDREKQAEYLLTLQAMDS 384
LF +N TG I L+ + LDREK EY LT+QA D
Sbjct: 62 -------LFTINRETGVISLIGTGLDREKFPEYTLTVQATDL 96
Score = 43.1 bits (100), Expect = 5e-06
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 4 RLEYSIVSGDDE----EIFTINPSNGTLSNLKH-LDRETKSSYNLVVMATDMAKPPQKRL 58
L YSI+ D E +FTIN G +S + LDRE Y L V ATD+ L
Sbjct: 45 VLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAG---L 101
Query: 59 SSTTQVSIVIRD 70
S + I I D
Sbjct: 102 SVEGKAIIQITD 113
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 70.5 bits (171), Expect = 1e-15
Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 175 NDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDG--INGRVRYTIISGDDNHDLT-- 230
NDN P F + ++ SVPE G V+ V+A D DD +NG +RY I+S +
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNM 60
Query: 231 ---ISEDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSD 282
+E ++ +A L+ E+ QY+L IQA D G+ +TAT I V+D
Sbjct: 61 FTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYG-LSNTATAVITVTD 114
Score = 54.3 bits (129), Expect = 6e-10
Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 12/114 (10%)
Query: 72 NDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATP------- 123
NDN PEF+ ++PE S T V + AID D+ P
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNM 60
Query: 124 FSLGPVDGLLRVAQKL-DREIKSNYTLEIKAKDRGEP---SKSSRTKFFIRLLD 173
F++ G + DRE YTL I+A D S+ I + D
Sbjct: 61 FTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 114
Score = 48.2 bits (113), Expect = 8e-08
Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 284 NDNYPVFLHSPYLALVNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGNSQ 343
NDN P FLH + V E + PG +MTV A DAD + + S A S S
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPG--TYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSP 58
Query: 344 TQGGTGDLFRVNSTTGDIYLLKSL-DREKQAEYLLTLQAMDS 384
++F +N+ TGDI + + DREK +Y L +QA D
Sbjct: 59 ------NMFTINNETGDIITVAAGLDREKVQQYTLIIQATDM 94
Score = 46.2 bits (108), Expect = 4e-07
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 12 GDDEEIFTINPSNGTLSNLKHLD-RETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRD 70
+FTIN G + + RE Y L++ ATDM P LS+T I + D
Sbjct: 55 TPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 114
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 112
Score = 67.4 bits (163), Expect = 1e-14
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 12/116 (10%)
Query: 175 NDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGI---NGRVRYTIISGDD----NH 227
NDN P F + + SV E G +V++VSATD DD + N + YTI+S D +
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKN 60
Query: 228 DLTISEDNGLLRIAKNL-NYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSD 282
T++ D G++ + + + E Y+L +QA D G+ TA I V D
Sbjct: 61 MFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEG----LSTTAKAVITVKD 112
Score = 59.4 bits (142), Expect = 8e-12
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 72 NDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEG---QNSYVEYSIINSEATP---- 123
NDN PEF E ++ E + T V + A D D+ N+ + Y+I++ +
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKN 60
Query: 124 -FSLGPVDGLLRVAQKLD-REIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 173
F++ G++ V RE YTL ++A D S+ K I + D
Sbjct: 61 MFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 112
Score = 49.7 bits (117), Expect = 2e-08
Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
Query: 284 NDNYPVFLHSPYLALVNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGNSQ 343
NDN P F + V E +PG S ++ D D +N + Y + +
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKN 60
Query: 344 TQGGTGDLFRVNSTTGDIYLLKSL-DREKQAEYLLTLQAMDS 384
+F VN TG I +L S DRE Y L +QA D
Sbjct: 61 -------MFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADL 95
Score = 41.6 bits (96), Expect = 1e-05
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 2 NGRLEYSIVSGDDE----EIFTINPSNGTLSNLKHLD-RETKSSYNLVVMATDMAKPPQK 56
N + Y+IVS D E +FT+N G +S L RE+ +Y LVV A D+
Sbjct: 42 NAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEG-- 99
Query: 57 RLSSTTQVSIVIRD 70
LS+T + I ++D
Sbjct: 100 -LSTTAKAVITVKD 112
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 104
Score = 66.7 bits (162), Expect = 2e-14
Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 6/95 (6%)
Query: 85 TIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-----PFSLGPVDGLLRVAQKL 139
+ PEN L I ++ + V YSI A F + G L+V + L
Sbjct: 11 SCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPL 69
Query: 140 DREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDE 174
DRE + YTL A + + I + D+
Sbjct: 70 DRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQ 104
Score = 62.8 bits (152), Expect = 4e-13
Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 9/108 (8%)
Query: 179 PIFDSKSYSASVPENISVGATVLQVSATDLDDGINGRVRYTIISGDDNHD----LTISED 234
P+ S PEN G + + G+V Y+I + I +
Sbjct: 1 PLGSWVIPPISCPEN-EKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 59
Query: 235 NGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSD 282
G L++ + L+ ER A Y+L A G D + I V+D
Sbjct: 60 TGWLKVTEPLDRERIATYTLFSHAVSSNG----NAVEDPMEILITVTD 103
Score = 50.1 bits (119), Expect = 1e-08
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Query: 1 DNGRLEYSIVS----GDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQK 56
G++ YSI +F I G L + LDRE ++Y L A
Sbjct: 33 KEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNA-- 90
Query: 57 RLSSTTQVSIVIRD 70
+ ++ I + D
Sbjct: 91 -VEDPMEILITVTD 103
Score = 41.3 bits (96), Expect = 2e-05
Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 11/86 (12%)
Query: 299 VNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGNSQTQGGTGDLFRVNSTT 358
EN GP + ++ G V Y + GA +F + T
Sbjct: 12 CPENE-KGPF--PKNLVQIKSNK-DKEGKVFYSITGQGAD-------TPPVGVFIIERET 60
Query: 359 GDIYLLKSLDREKQAEYLLTLQAMDS 384
G + + + LDRE+ A Y L A+ S
Sbjct: 61 GWLKVTEPLDRERIATYTLFSHAVSS 86
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 100
Score = 64.8 bits (157), Expect = 7e-14
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 9/98 (9%)
Query: 189 SVPENISVGATVLQVSATDLDDGINGRVRYTIISGDDNHDL----TISEDNGLLRIAKNL 244
V EN G ++ + +V Y+I ++ I + G + + + L
Sbjct: 8 KVSEN-ERGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPL 66
Query: 245 NYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSD 282
+ E +Y L+ A G E + ++I V D
Sbjct: 67 DREEYDKYVLSSHAVSENGSPVE----EPMEITINVID 100
Score = 63.2 bits (153), Expect = 3e-13
Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 6/94 (6%)
Query: 85 TIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATP-----FSLGPVDGLLRVAQKL 139
+ EN L I ++ + + V YSI A F + G + V + L
Sbjct: 8 KVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPL 66
Query: 140 DREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 173
DRE Y L A + I ++D
Sbjct: 67 DREEYDKYVLSSHAVSENGSPVEEPMEITINVID 100
Score = 52.8 bits (126), Expect = 1e-09
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Query: 1 DNGRLEYSIVSGDDEE----IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQK 56
++ YSI + +F I G + + LDRE Y L A P
Sbjct: 30 RFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSP-- 87
Query: 57 RLSSTTQVSIVIRD 70
+ +++I + D
Sbjct: 88 -VEEPMEITINVID 100
Score = 40.1 bits (93), Expect = 4e-05
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 299 VNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGNSQTQGGTGDLFRVNSTT 358
V+EN GP + ++ V Y + GA + +FR+ T
Sbjct: 9 VSENE-RGPF--PKRLVQIKSNK-DRFNKVYYSITGQGADNPPQ-------GVFRIEWET 57
Query: 359 GDIYLLKSLDREKQAEYLLTLQAMDS 384
G + + + LDRE+ +Y+L+ A+
Sbjct: 58 GWMLVTRPLDREEYDKYVLSSHAVSE 83
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 136
Score = 62.7 bits (151), Expect = 9e-13
Identities = 15/123 (12%), Positives = 37/123 (30%), Gaps = 12/123 (9%)
Query: 173 DENDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGINGRVRYTIISGDDNHDLTIS 232
+ F YSA +P+++ G +L V ++ + + + +
Sbjct: 5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFKVD----- 59
Query: 233 EDNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPVFLH 292
++G + ++ + Q I A+D V++ P+
Sbjct: 60 -EDGTVYAVRSFPLTAE-QAKFLIYAQDKE-----TQEKWQVAVNLSREPTLTEEPMKEP 112
Query: 293 SPY 295
Sbjct: 113 HEI 115
Score = 60.4 bits (145), Expect = 7e-12
Identities = 15/135 (11%), Positives = 36/135 (26%), Gaps = 9/135 (6%)
Query: 70 DVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGP 128
++ F +P++ + +K + + + E S
Sbjct: 5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFKVDE---- 60
Query: 129 VDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSA 188
DG + + + I A+D+ K + P+ +
Sbjct: 61 -DGTVYAVRSFPLTAE-QAKFLIYAQDKETQEKWQVA-VNLSREPTLTEEPMKEPHEIEE 117
Query: 189 -SVPENISVGATVLQ 202
P ++ + LQ
Sbjct: 118 IVFPRQLAKHSGALQ 132
Score = 38.0 bits (87), Expect = 4e-04
Identities = 6/39 (15%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 282 DINDNYPVFLHSPYLALVNENTLPGPSFRIMTVQAHDAD 320
+I F Y A++ ++ G ++ V+ + +
Sbjct: 5 EIALCKTGFPEDVYSAVLPKDVHEGQP--LLNVKFSNCN 41
Score = 34.2 bits (77), Expect = 0.008
Identities = 8/79 (10%), Positives = 20/79 (25%), Gaps = 7/79 (8%)
Query: 18 FTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPE 77
+GT+ ++ + ++ A D + V++ P
Sbjct: 55 DFKVDEDGTVYAVRSFPLTAEQ-AKFLIYAQDKETQEK----WQVAVNLSREPTLTEEPM 109
Query: 78 FITAN--ETTIPENSPLNT 94
E P ++
Sbjct: 110 KEPHEIEEIVFPRQLAKHS 128
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 60.2 bits (145), Expect = 3e-12
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 85 TIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATP-----FSLGPVDGLLRVAQKL 139
+PENS L I +N + YS+ A F + P+ G L V + L
Sbjct: 10 NLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 68
Query: 140 DREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 173
DRE+ + + L A D + I ++D
Sbjct: 69 DRELIARFHLRAHAVDINGNQVENPIDIVINVID 102
Score = 59.1 bits (142), Expect = 1e-11
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 9/98 (9%)
Query: 189 SVPENISVGATVLQVSATDLDDGINGRVRYTIISGDDNHD----LTISEDNGLLRIAKNL 244
++PEN S G ++ N +RY++ + I+ +G L + K L
Sbjct: 10 NLPEN-SRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 68
Query: 245 NYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSD 282
+ E A++ L A D G+ E + + I V D
Sbjct: 69 DRELIARFHLRAHAVDINGNQVE----NPIDIVINVID 102
Score = 46.8 bits (110), Expect = 2e-07
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 1 DNGRLEYSIVS----GDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQK 56
N L YS+ IF INP +G LS K LDRE + ++L A D+
Sbjct: 32 KNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQ-- 89
Query: 57 RLSSTTQVSIVIRD 70
+ + + I + D
Sbjct: 90 -VENPIDIVINVID 102
Score = 38.3 bits (88), Expect = 2e-04
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 11/86 (12%)
Query: 299 VNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGNSQTQGGTGDLFRVNSTT 358
+ EN+ GP + + N +RY + GA +F +N +
Sbjct: 11 LPENS-RGPF--PQELVRIRSGR-DKNLSLRYSVTGPGAD-------QPPTGIFIINPIS 59
Query: 359 GDIYLLKSLDREKQAEYLLTLQAMDS 384
G + + K LDRE A + L A+D
Sbjct: 60 GQLSVTKPLDRELIARFHLRAHAVDI 85
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 53.5 bits (127), Expect = 9e-10
Identities = 15/116 (12%), Positives = 33/116 (28%), Gaps = 12/116 (10%)
Query: 175 NDNNPIFDSKSYSASVPENISVGATVLQVSATDLDDGINGRVRYTIISGDDNHD-LTISE 233
NDN P+ + + ++ + ++ +D D N +S + +
Sbjct: 1 NDNGPVPSPRVF--TMCDQNPEP---QVLTISDADIPPNTYPYKVSLSHGSDLTWKAELD 55
Query: 234 DNGLLRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDINDNYPV 289
G + +K YS+ + D + V+ V
Sbjct: 56 SKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNP------QLTVVNATVCSCEGKAIK 105
Score = 46.6 bits (109), Expect = 3e-07
Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 4/108 (3%)
Query: 72 NDNAPEFITANETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDG 131
NDN P + T+ + +P V+ A D Y S+ T + G
Sbjct: 1 NDNGPVP-SPRVFTMCDQNPEPQVLTISDA-DIPPNTYPYKVSLSHGSDLTWKAELDSKG 58
Query: 132 LLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNP 179
+ + K +Y++ + D + T +
Sbjct: 59 TSMLLSPTQQLKKGDYSIYVLLSDAQNNPQL--TVVNATVCSCEGKAI 104
Score = 33.9 bits (76), Expect = 0.006
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 32 HLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 76
+ K Y++ V+ +D PQ T V+ + A
Sbjct: 65 PTQQLKKGDYSIYVLLSDAQNNPQ-----LTVVNATVCSCEGKAI 104
Score = 27.7 bits (60), Expect = 0.94
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 18/101 (17%)
Query: 284 NDNYPVFLHSPYLALVNENTLPGPSFRIMTVQAHDADSLPFNGLVRYFLKDSGASSGNSQ 343
NDN PV SP + + + P +++T DAD P +
Sbjct: 1 NDNGPVP--SPRVFTMCDQN---PEPQVLT--ISDADIPPNTYPYKVS-----------L 42
Query: 344 TQGGTGDLFRVNSTTGDIYLLKSLDREKQAEYLLTLQAMDS 384
+ G + G LL + K+ +Y + + D+
Sbjct: 43 SHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDA 83
>d2f9zc1 d.194.1.3 (C:1-157) Chemoreceptor glutamine deamidase CheD
{Thermotoga maritima [TaxId: 2336]}
Length = 157
Score = 30.0 bits (68), Expect = 0.21
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 250 AQYSLTIQAEDCGGDTEERIRFDTATVSILVSDIN 284
+ + + AED GG+ + ++ T +LV +
Sbjct: 113 KDFGIKLLAEDTGGNRARSVEYNIETGKLLVRKVG 147
>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 114
Score = 25.6 bits (56), Expect = 5.5
Identities = 5/25 (20%), Positives = 14/25 (56%)
Query: 162 SSRTKFFIRLLDENDNNPIFDSKSY 186
+ + +F+R+ D D +++ + Y
Sbjct: 43 NPQRSYFLRIFDIKDGKLLWEQELY 67
>d1ofza_ b.68.8.1 (A:) Fucose-specific lectin {Orange peel mushroom
(Aleuria aurantia) [TaxId: 5188]}
Length = 312
Score = 26.1 bits (57), Expect = 8.0
Identities = 3/56 (5%), Positives = 13/56 (23%), Gaps = 4/56 (7%)
Query: 175 NDNNPIF----DSKSYSASVPENISVGATVLQVSATDLDDGINGRVRYTIISGDDN 226
++ + ++ S L + + N + + +
Sbjct: 231 KGREELYEAAYGGSWNTPGQIKDASRPTPSLPDTFIAANSSGNIDISVFFQASGVS 286
>d2pi2e1 b.40.4.3 (E:3-117) Replication protein A 14 KDa (RPA14)
subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 115
Score = 24.7 bits (54), Expect = 9.5
Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 10/108 (9%)
Query: 179 PIFDSKSYSASVPENISVGATVLQVSATDLDDGINGRVRYTIISGDDNHDLTISEDNGL- 237
++ + + + + + ++ T + I+S + + TI L
Sbjct: 8 SRINAGMLAQFIDKPVCFVGRLEKIHPTG---------KMFILSDGEGKNGTIELMEPLD 58
Query: 238 LRIAKNLNYERKAQYSLTIQAEDCGGDTEERIRFDTATVSILVSDIND 285
I+ + + TI E+ FD + V I+D
Sbjct: 59 EEISGIVEVVGRVTAKATILCTSYVQFKEDSHPFDLGLYNEAVKIIHD 106
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.131 0.359
Gapped
Lambda K H
0.267 0.0664 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,304,824
Number of extensions: 58095
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 45
Length of query: 384
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 297
Effective length of database: 1,213,086
Effective search space: 360286542
Effective search space used: 360286542
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (24.7 bits)