BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13121
(158 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JG0|A Chain A, Family 37 Trehalase From Escherichia Coli In Complex With
1- Thiatrehazolin
pdb|2JJB|A Chain A, Family 37 Trehalase From Escherichia Coli In Complex With
Casuarine-6-O-Alpha-Glucopyranose
pdb|2JJB|B Chain B, Family 37 Trehalase From Escherichia Coli In Complex With
Casuarine-6-O-Alpha-Glucopyranose
pdb|2JJB|C Chain C, Family 37 Trehalase From Escherichia Coli In Complex With
Casuarine-6-O-Alpha-Glucopyranose
pdb|2JJB|D Chain D, Family 37 Trehalase From Escherichia Coli In Complex With
Casuarine-6-O-Alpha-Glucopyranose
pdb|2WYN|A Chain A, Structure Of Family 37 Trehalase From Escherichia Coli In
Complex With A Casuarine-6-O-A-D-Glucoside Analogue
pdb|2WYN|B Chain B, Structure Of Family 37 Trehalase From Escherichia Coli In
Complex With A Casuarine-6-O-A-D-Glucoside Analogue
pdb|2WYN|C Chain C, Structure Of Family 37 Trehalase From Escherichia Coli In
Complex With A Casuarine-6-O-A-D-Glucoside Analogue
pdb|2WYN|D Chain D, Structure Of Family 37 Trehalase From Escherichia Coli In
Complex With A Casuarine-6-O-A-D-Glucoside Analogue
Length = 535
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 20 TSLFNSTQQWDYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAM 79
T+ S QQWD PN WAPLQ +GL Q+ K+VA ++ +L Y+ K +
Sbjct: 408 TTSVKSGQQWDAPNGWAPLQWVATEGL---QNYGQKEVAMDISWHFLTNVQHTYDREKKL 464
Query: 80 FEKYDVELIGKTGNGGEYEAQTGFGWTNGFAFELLN 115
EKYDV G G GGEY Q GFGWTNG ++L+
Sbjct: 465 VEKYDVSTTGTGGGGGEYPLQDGFGWTNGVTLKMLD 500
>pdb|2JF4|A Chain A, Family 37 Trehalase From Escherichia Coli In Complex With
Validoxylamine
Length = 535
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 20 TSLFNSTQQWDYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAM 79
T+ S QQWD PN WAPLQ +GL Q+ K+VA ++ +L Y+ K +
Sbjct: 408 TTSVKSGQQWDAPNGWAPLQWVATEGL---QNYGQKEVAXDISWHFLTNVQHTYDREKKL 464
Query: 80 FEKYDVELIGKTGNGGEYEAQTGFGWTNGFAFELLN 115
EKYDV G G GGEY Q GFGWTNG + L+
Sbjct: 465 VEKYDVSTTGTGGGGGEYPLQDGFGWTNGVTLKXLD 500
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 28 QWDYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYD 84
QWD+ AW LQ L DKL +A E WL Y+GY + + K D
Sbjct: 743 QWDF--AWGQLQQ---AQLVNEADKLRSALACS-NEVWLLNRYLGYTLNPDLIRKQD 793
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Query: 28 QWDYPNAWAPLQ-AFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYD 84
QWD+ AW LQ A ++ D + LA E WL Y+GY + + K D
Sbjct: 787 QWDF--AWGQLQQAQLVNEADKLRSALACS-----NEVWLLNRYLGYTLNPDLIRKQD 837
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 28 QWDYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYD 84
QWD+ AW LQ L DKL +A E WL Y+GY + + K D
Sbjct: 743 QWDF--AWGQLQQ---AQLVNEADKLRSALACS-NEVWLLNRYLGYTLNPDLIRKQD 793
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 28 QWDYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYD 84
QWD+ AW LQ L DKL +A E WL Y+GY + + K D
Sbjct: 744 QWDF--AWGQLQQ---AQLVNEADKLRSALACS-NEVWLLNRYLGYTLNPDLIRKQD 794
>pdb|4EBY|A Chain A, Crystal Structure Of The Ectodomain Of A Receptor Like
Kinase
pdb|4EBZ|A Chain A, Crystal Structure Of The Ectodomain Of A Receptor Like
Kinase
Length = 212
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 98 EAQTGFGWTNGFAFELLNRYGKTISFNNTQGSYYNKIPGSGYLSGYYPSFMSGR 151
++ + ++G + ++L RY ++FN+ G Y +PG +G +P F S +
Sbjct: 152 DSLSSIARSSGVSADILQRYNPGVNFNSGNGIVY--VPGRDP-NGAFPPFKSSK 202
>pdb|4IX1|A Chain A, Crystal Structure Of Hypothetical Protein Opag_01669 From
Rhodococcus Opacus Pd630, Target 016205
pdb|4IX1|B Chain B, Crystal Structure Of Hypothetical Protein Opag_01669 From
Rhodococcus Opacus Pd630, Target 016205
pdb|4IX1|C Chain C, Crystal Structure Of Hypothetical Protein Opag_01669 From
Rhodococcus Opacus Pd630, Target 016205
pdb|4IX1|D Chain D, Crystal Structure Of Hypothetical Protein Opag_01669 From
Rhodococcus Opacus Pd630, Target 016205
pdb|4IX1|E Chain E, Crystal Structure Of Hypothetical Protein Opag_01669 From
Rhodococcus Opacus Pd630, Target 016205
pdb|4IX1|F Chain F, Crystal Structure Of Hypothetical Protein Opag_01669 From
Rhodococcus Opacus Pd630, Target 016205
pdb|4IX1|G Chain G, Crystal Structure Of Hypothetical Protein Opag_01669 From
Rhodococcus Opacus Pd630, Target 016205
pdb|4IX1|H Chain H, Crystal Structure Of Hypothetical Protein Opag_01669 From
Rhodococcus Opacus Pd630, Target 016205
Length = 258
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 74 ETSKAMFEKYDVELIGKTGNGGEYEAQTGFGWTNGFAFELLNRYGKTISF 123
ETS A V+++G+ G + TG W + +L GK ++
Sbjct: 64 ETSAAALGSAGVDIVGQVGTPFSFAGGTGLEWAEDISTKLEKASGKPVAL 113
>pdb|2D13|A Chain A, Crystal Structure Of Ph1257 From Pyrococcus Horikoshii Ot3
pdb|2D13|B Chain B, Crystal Structure Of Ph1257 From Pyrococcus Horikoshii Ot3
pdb|2D13|C Chain C, Crystal Structure Of Ph1257 From Pyrococcus Horikoshii Ot3
pdb|2D13|D Chain D, Crystal Structure Of Ph1257 From Pyrococcus Horikoshii Ot3
Length = 227
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 58 AYRLAEKWL--FTNYMGYETSKAMFEKYDVELIGKTGNGGEYE 98
AY L E WL NY E K + EKY + + G GGE+E
Sbjct: 149 AYGLNESWLGRELNYKNLEELKKLSEKYGIHI---AGEGGEFE 188
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 93 NGGEYEAQTGFGWTNGFAFELLNRYGKTISFNNTQG 128
+GG A GFG NG L+R IS+N+ G
Sbjct: 67 SGGHSYASFGFGGENGHLMVQLDRMIDVISYNDKTG 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,529,370
Number of Sequences: 62578
Number of extensions: 240290
Number of successful extensions: 341
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 333
Number of HSP's gapped (non-prelim): 14
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)