Query psy13121
Match_columns 158
No_of_seqs 138 out of 529
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 20:09:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13121.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13121hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13270 treF trehalase; Provi 100.0 2.4E-39 5.3E-44 296.7 10.7 103 14-119 445-548 (549)
2 KOG0602|consensus 100.0 2.2E-39 4.8E-44 298.4 8.9 125 11-135 457-588 (600)
3 PRK13271 treA trehalase; Provi 100.0 8.2E-39 1.8E-43 294.2 12.5 105 14-121 436-540 (569)
4 PLN02567 alpha,alpha-trehalase 100.0 5.9E-39 1.3E-43 294.1 11.4 109 14-122 441-549 (554)
5 PRK13272 treA trehalase; Provi 100.0 6.8E-39 1.5E-43 293.4 10.6 105 14-121 436-540 (542)
6 PF01204 Trehalase: Trehalase; 100.0 2.7E-39 5.8E-44 292.8 6.8 102 14-118 410-512 (512)
7 COG1626 TreA Neutral trehalase 100.0 2.6E-33 5.6E-38 255.7 10.0 108 12-122 449-557 (558)
8 PRK10137 alpha-glucosidase; Pr 99.6 4.5E-16 9.7E-21 148.4 9.9 92 15-118 688-784 (786)
9 PF03200 Glyco_hydro_63: Manno 98.9 3.5E-09 7.6E-14 101.7 7.8 96 14-117 688-801 (801)
10 KOG2161|consensus 97.8 8.2E-05 1.8E-09 71.7 7.7 83 28-117 758-847 (849)
11 COG3408 GDB1 Glycogen debranch 94.5 0.11 2.3E-06 49.7 6.7 89 14-117 512-607 (641)
12 PF11724 YvbH_ext: YvbH-like o 69.4 2.2 4.8E-05 29.5 0.8 29 55-83 28-58 (61)
13 COG3387 SGA1 Glucoamylase and 59.0 44 0.00096 32.0 7.6 65 15-87 261-331 (612)
14 PF08711 Med26: TFIIS helical 53.3 34 0.00074 21.7 4.2 29 41-69 23-52 (53)
15 COG0124 HisS Histidyl-tRNA syn 51.9 19 0.00042 33.1 3.9 44 76-119 272-328 (429)
16 TIGR01535 glucan_glucosid gluc 44.7 53 0.0012 31.8 5.8 66 14-86 268-340 (648)
17 PF14821 Thr_synth_N: Threonin 38.8 27 0.00059 24.5 2.2 33 31-66 30-62 (79)
18 PF06824 DUF1237: Protein of u 36.0 45 0.00097 31.0 3.7 66 32-114 357-422 (424)
19 cd00183 TFIIS_I N-terminal dom 33.5 83 0.0018 21.7 3.9 29 41-69 47-75 (76)
20 COG3538 Uncharacterized conser 33.5 42 0.00091 31.1 3.0 69 33-118 355-423 (434)
21 PRK15444 pduC propanediol dehy 29.3 64 0.0014 30.7 3.5 44 42-88 473-517 (554)
22 PF02286 Dehydratase_LU: Dehyd 28.1 66 0.0014 30.6 3.4 44 42-88 473-517 (554)
23 PF06202 GDE_C: Amylo-alpha-1, 27.5 1E+02 0.0023 27.2 4.5 54 28-84 293-348 (370)
24 TIGR01577 oligosac_amyl oligos 27.5 3.8E+02 0.0083 25.3 8.4 64 16-86 274-340 (616)
25 smart00509 TFS2N Domain in the 27.2 1.3E+02 0.0028 20.8 4.0 29 41-69 45-73 (75)
26 KOG2886|consensus 23.5 39 0.00083 28.5 0.9 39 56-96 114-155 (209)
27 PF12899 Glyco_hydro_100: Alka 22.8 2.9E+02 0.0063 25.9 6.5 76 26-113 352-429 (436)
28 cd03687 Dehydratase_LU Dehydra 20.8 1.2E+02 0.0027 28.8 3.7 44 42-88 466-510 (545)
No 1
>PRK13270 treF trehalase; Provisional
Probab=100.00 E-value=2.4e-39 Score=296.69 Aligned_cols=103 Identities=38% Similarity=0.685 Sum_probs=98.8
Q ss_pred cCCceeecccCCCCCCCCCCCCchHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeeeeec-cccc
Q psy13121 14 LLESTPTSLFNSTQQWDYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYDVELI-GKTG 92 (158)
Q Consensus 14 ~~GGiptSl~~sg~QWD~PN~WaPlq~i~IeGL~~~G~~~a~~lA~~lA~rWl~t~~~~~~~tg~m~EKYdv~~~-g~~G 92 (158)
.+|||+||+.+|++|||+||+|||||||+|+||++||+ .++|++||+|||++|+++|.++|.|||||||... +..|
T Consensus 445 ~pGGl~tS~~~sgqQWD~PN~WaPlqwmiieGL~ryG~---~~lA~~LA~rwl~~~~~~~~~~g~m~EKYdv~~~~g~~G 521 (549)
T PRK13270 445 TPGGILASEYETGEQWDKPNGWAPLQWMAIQGFKMYGD---DLLGDEIARSWLKTVNQFYQEHHKLIEKYHIAGGVPREG 521 (549)
T ss_pred cCCCcCCCCCCCcccCCCCCCCccHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHHhhcCeeEEEecCCCCCCCCC
Confidence 49999999999999999999999999999999999999 8999999999999999999999999999999865 5678
Q ss_pred CcccccccccccccHHHHHHHHHHhcc
Q psy13121 93 NGGEYEAQTGFGWTNGFAFELLNRYGK 119 (158)
Q Consensus 93 ~gGEY~~q~GFGWTNGV~L~ll~~yg~ 119 (158)
+||||++|+||||||||+|+||++||+
T Consensus 522 gGGEY~~q~GFGWTNGV~l~~l~~yg~ 548 (549)
T PRK13270 522 GGGEYPLQDGFGWTNGVVRRLIGLYGE 548 (549)
T ss_pred CCCCcCCCCCcCcHHHHHHHHHHHhCC
Confidence 899999999999999999999999985
No 2
>KOG0602|consensus
Probab=100.00 E-value=2.2e-39 Score=298.38 Aligned_cols=125 Identities=44% Similarity=0.788 Sum_probs=114.6
Q ss_pred ccccCCceeecccCCCCCCCCCCCCchHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeeeee-cc
Q psy13121 11 ADYLLESTPTSLFNSTQQWDYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYDVEL-IG 89 (158)
Q Consensus 11 ~~~~~GGiptSl~~sg~QWD~PN~WaPlq~i~IeGL~~~G~~~a~~lA~~lA~rWl~t~~~~~~~tg~m~EKYdv~~-~g 89 (158)
+..+|||||+|+.+|+||||+||+|||+|+|+|+||+++|.++++++|.++|+|||.+|+++|.++|.|||||||+. .+
T Consensus 457 ~~~~p~giP~Sl~~s~eQWD~Pn~WaP~q~m~~~gl~~~~~~~~~~~A~kla~~wl~~~~~~~~~~g~~~EKY~vt~~~~ 536 (600)
T KOG0602|consen 457 ALTFPGGIPTSLSNSGEQWDFPNGWAPNQHMAIEGLRRAGNQELQEVALKLAQRWLETNFAVFVDSGGMFEKYDVTRDPG 536 (600)
T ss_pred CcCCCCCCcccCCCchhhccCCCCCCcceehhhhhhhhcCCHHHHHHHHHHHHHHHHHhhhhhcccCceeEeeccccCCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999 78
Q ss_pred cccCcccccccccccccHHHHHHHHHHhcccccC------CCCCCccccccC
Q psy13121 90 KTGNGGEYEAQTGFGWTNGFAFELLNRYGKTISF------NNTQGSYYNKIP 135 (158)
Q Consensus 90 ~~G~gGEY~~q~GFGWTNGV~L~ll~~yg~~l~~------~~~~~~~~~~~~ 135 (158)
.+|+||||.+|+||||||||+|++|.+||++++. |+.+..++.+++
T Consensus 537 ~~G~ggEY~~QeGFGW~Ng~il~~L~~~g~~~~~~~a~~~c~~~~~~~~~~~ 588 (600)
T KOG0602|consen 537 PHGGGGEYEVQEGFGWTNGVILDLLKKYGSDLRRGEACCACDEPESFEATLK 588 (600)
T ss_pred CCCCCCccccccCCCccchhHHHHHHHcCCcccccchhhccCCccchhhccc
Confidence 8899999999999999999999999999999876 344444444444
No 3
>PRK13271 treA trehalase; Provisional
Probab=100.00 E-value=8.2e-39 Score=294.21 Aligned_cols=105 Identities=39% Similarity=0.650 Sum_probs=101.2
Q ss_pred cCCceeecccCCCCCCCCCCCCchHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeeeeecccccC
Q psy13121 14 LLESTPTSLFNSTQQWDYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYDVELIGKTGN 93 (158)
Q Consensus 14 ~~GGiptSl~~sg~QWD~PN~WaPlq~i~IeGL~~~G~~~a~~lA~~lA~rWl~t~~~~~~~tg~m~EKYdv~~~g~~G~ 93 (158)
.+||||||+.+|+||||+||+|||||||+|+||++||+ .++|++||+|||++|+++|.++|.|||||||+..|..|+
T Consensus 436 ~pgGLpTt~~~SgqQWD~PngWaPlq~iiieGL~~yG~---~~lA~~la~rwl~~~~~~~~~~g~m~EKYd~~~~G~~gG 512 (569)
T PRK13271 436 QPGGLNTTSVKSGQQWDAPNGWAPLQWVATEGLQNYGQ---KEVAMDVTWRFLTNVQHTYDREKKLVEKYDVSSTGTGGG 512 (569)
T ss_pred CCCCccCCCCCCCCCCcCcccCHhHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHhcccCceEEeeCCCCCCCCCC
Confidence 49999999999999999999999999999999999999 899999999999999999999999999999987888899
Q ss_pred cccccccccccccHHHHHHHHHHhcccc
Q psy13121 94 GGEYEAQTGFGWTNGFAFELLNRYGKTI 121 (158)
Q Consensus 94 gGEY~~q~GFGWTNGV~L~ll~~yg~~l 121 (158)
||||++|+||||||||+|+||++|+.+.
T Consensus 513 GGeY~~q~GFGWTNgV~L~lL~~~~~~~ 540 (569)
T PRK13271 513 GGEYPLQDGFGWTNGVTLKMLDLICPKE 540 (569)
T ss_pred CCCCCCCCCcCcHHHHHHHHHHhcCccc
Confidence 9999999999999999999999998764
No 4
>PLN02567 alpha,alpha-trehalase
Probab=100.00 E-value=5.9e-39 Score=294.11 Aligned_cols=109 Identities=48% Similarity=0.883 Sum_probs=105.1
Q ss_pred cCCceeecccCCCCCCCCCCCCchHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeeeeecccccC
Q psy13121 14 LLESTPTSLFNSTQQWDYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYDVELIGKTGN 93 (158)
Q Consensus 14 ~~GGiptSl~~sg~QWD~PN~WaPlq~i~IeGL~~~G~~~a~~lA~~lA~rWl~t~~~~~~~tg~m~EKYdv~~~g~~G~ 93 (158)
.|||||||+.+|++|||+||+|||+|||+|+||++||+++|+++|++||+|||++|+++|.++|.|+||||+..++..|+
T Consensus 441 ~pgGiptsl~~sg~qWdgPn~W~pl~~l~i~GL~~yG~~ea~~lA~~la~rwl~~~~~~~~~tg~m~EkYd~~~~~~~Gg 520 (554)
T PLN02567 441 LPAGIATSLRNTGQQWDFPNAWAPLQHMIVEGLAASGSKEGKALAEDIARRWLRSNYVAYKKTGAMHEKYDARYCGEVGG 520 (554)
T ss_pred cCCcccCCCCCccccCCCCCcCHhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHhcCceEEeECCCCccccCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred cccccccccccccHHHHHHHHHHhccccc
Q psy13121 94 GGEYEAQTGFGWTNGFAFELLNRYGKTIS 122 (158)
Q Consensus 94 gGEY~~q~GFGWTNGV~L~ll~~yg~~l~ 122 (158)
||||.+|+||||||||+|+|+++||....
T Consensus 521 GGey~~q~GFGWTngV~L~ll~~yg~~~~ 549 (554)
T PLN02567 521 GGEYIPQTGFGWSNGVVLSLLEEFGWPED 549 (554)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHhCCccc
Confidence 99999999999999999999999997543
No 5
>PRK13272 treA trehalase; Provisional
Probab=100.00 E-value=6.8e-39 Score=293.39 Aligned_cols=105 Identities=35% Similarity=0.606 Sum_probs=100.8
Q ss_pred cCCceeecccCCCCCCCCCCCCchHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeeeeecccccC
Q psy13121 14 LLESTPTSLFNSTQQWDYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYDVELIGKTGN 93 (158)
Q Consensus 14 ~~GGiptSl~~sg~QWD~PN~WaPlq~i~IeGL~~~G~~~a~~lA~~lA~rWl~t~~~~~~~tg~m~EKYdv~~~g~~G~ 93 (158)
.+||||||+.+|+||||+||+|||||||+|+||++||+ +++|++||+|||++|+++|.++|.|+|||||+..+..|+
T Consensus 436 ~~gGlpTt~~~sgqQWD~PN~WaPlq~i~i~GL~~yG~---~~lA~~La~rwl~~~~~~~~~~g~m~EKYdv~~~g~~Gg 512 (542)
T PRK13272 436 RPGGLATTALKTGQQWDEPNGWAPLQWVAVDGLRRYGE---DALARTIGERFLAQVQALFAREHKLVEKYGLDGNAAGGG 512 (542)
T ss_pred CCCCcCCCCCCccccCCCCCccHhHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHHhhcCceeEEeecCCCCCCCC
Confidence 58999999999999999999999999999999999999 899999999999999999999999999999988777788
Q ss_pred cccccccccccccHHHHHHHHHHhcccc
Q psy13121 94 GGEYEAQTGFGWTNGFAFELLNRYGKTI 121 (158)
Q Consensus 94 gGEY~~q~GFGWTNGV~L~ll~~yg~~l 121 (158)
||||++|+||||||||+|+||++||...
T Consensus 513 GGEY~~Q~GFGWTNgV~L~lL~~yg~~~ 540 (542)
T PRK13272 513 GGEYALQDGFGWTNGVTLMLLNLYPPGG 540 (542)
T ss_pred CCCcCCCCCCCCHHHHHHHHHHHhcccc
Confidence 9999999999999999999999998653
No 6
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=100.00 E-value=2.7e-39 Score=292.83 Aligned_cols=102 Identities=51% Similarity=0.941 Sum_probs=91.9
Q ss_pred cCCceeecccCCCCCCCCCCCCchHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeeeeeccccc-
Q psy13121 14 LLESTPTSLFNSTQQWDYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYDVELIGKTG- 92 (158)
Q Consensus 14 ~~GGiptSl~~sg~QWD~PN~WaPlq~i~IeGL~~~G~~~a~~lA~~lA~rWl~t~~~~~~~tg~m~EKYdv~~~g~~G- 92 (158)
++||+|+|+..+++|||+||+|||||||+|+||++||+ +++|++||+|||++|+++|.++|.|||||||+.++..|
T Consensus 410 ~~~g~~ts~~~~~~qWD~Pn~WaPlq~~~i~GL~~yG~---~~lA~~la~rwl~~~~~~~~~~g~m~EKYd~~~~~~~gg 486 (512)
T PF01204_consen 410 FPGGIPTSLYDTGQQWDGPNVWAPLQWMAIEGLRRYGY---RELARRLAQRWLRLNYKVFKRTGKMFEKYDVEDGGEPGG 486 (512)
T ss_dssp -CSECTTCTTTTTSTTSTTEEEHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHCCCCCSSEBSEEETTTTSCEC-
T ss_pred cCCCCCCccccccccCCCCCccHhHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHHhhcCchhccccceeccccCC
Confidence 48999999999999999999999999999999999999 99999999999999999999999999999999887776
Q ss_pred CcccccccccccccHHHHHHHHHHhc
Q psy13121 93 NGGEYEAQTGFGWTNGFAFELLNRYG 118 (158)
Q Consensus 93 ~gGEY~~q~GFGWTNGV~L~ll~~yg 118 (158)
+||||++|+||||||||+|+||++||
T Consensus 487 ~gGeY~~q~GFGWTNgv~l~~l~~yg 512 (512)
T PF01204_consen 487 GGGEYPVQDGFGWTNGVYLDLLDKYG 512 (512)
T ss_dssp S-SSS---BS-HHHHHHHHHHHHHH-
T ss_pred CCCcccCCCCCccHHHHHHHHHHhhC
Confidence 89999999999999999999999997
No 7
>COG1626 TreA Neutral trehalase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-33 Score=255.68 Aligned_cols=108 Identities=41% Similarity=0.634 Sum_probs=100.5
Q ss_pred cccCCceeecccCCCCCCCCCCCCchHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeeeeecc-c
Q psy13121 12 DYLLESTPTSLFNSTQQWDYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYDVELIG-K 90 (158)
Q Consensus 12 ~~~~GGiptSl~~sg~QWD~PN~WaPlq~i~IeGL~~~G~~~a~~lA~~lA~rWl~t~~~~~~~tg~m~EKYdv~~~g-~ 90 (158)
...||||+||..+|++|||+||||||||+|+++||+|||+ +++|.+||+||+.++...|..+|++.|||||..+. .
T Consensus 449 l~~pGGl~ast~~s~~QWD~PNgWaPlq~ia~~gL~ryG~---~~la~~ia~rwL~~v~~~~d~~~~~VEKydv~~~~~~ 525 (558)
T COG1626 449 LEQPGGLSASTPRSGQQWDYPNGWAPLQWIATQGLKRYGY---DILADDIARRWLTNVEQFYDYEGKLVEKYDVSRGTGP 525 (558)
T ss_pred hcCCCceecccccccccccCCCCCccHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHhhcccceeEeeecccccC
Confidence 4479999999999999999999999999999999999999 99999999999999999777889999999999664 5
Q ss_pred ccCcccccccccccccHHHHHHHHHHhccccc
Q psy13121 91 TGNGGEYEAQTGFGWTNGFAFELLNRYGKTIS 122 (158)
Q Consensus 91 ~G~gGEY~~q~GFGWTNGV~L~ll~~yg~~l~ 122 (158)
.|++|||+.|+||||||||+|.||+.|+..+.
T Consensus 526 ~g~~geyp~q~GFGWtNgv~l~lL~~~~~~~~ 557 (558)
T COG1626 526 GGGGGEYPLQDGFGWTNGVVLKLLDLYGPHAR 557 (558)
T ss_pred CCCCcccCCcccccchhHHHHHHHHhhCcccC
Confidence 56789999999999999999999999987654
No 8
>PRK10137 alpha-glucosidase; Provisional
Probab=99.65 E-value=4.5e-16 Score=148.36 Aligned_cols=92 Identities=18% Similarity=0.367 Sum_probs=77.4
Q ss_pred CCceeecc-----cCCCCCCCCCCCCchHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeeeeecc
Q psy13121 15 LESTPTSL-----FNSTQQWDYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYDVELIG 89 (158)
Q Consensus 15 ~GGiptSl-----~~sg~QWD~PN~WaPlq~i~IeGL~~~G~~~a~~lA~~lA~rWl~t~~~~~~~tg~m~EKYdv~~~g 89 (158)
+.||||.. .+...+|+. ++|||+++|+++||++||+ .++|++|+++|++ +.+.|.++|.|+||||+..+.
T Consensus 688 ~~GipTlS~s~p~ydp~~YWRG-pVWpp~N~Li~~GL~rYG~---~e~A~~La~~ll~-~a~~l~~tG~~~E~YDp~TGe 762 (786)
T PRK10137 688 FVPLGTAALTNPAFGADIYWRG-RVWVDQFYFGLKGMERYGY---RDDALKLADTFFR-HAKGLTADGPIQENYNPLTGA 762 (786)
T ss_pred CCCccCcCCCccccCCCCCCCC-CcCHhHHHHHHHHHHHcCC---HHHHHHHHHHHHH-HHHHHHhcCceEEeECCCCCc
Confidence 56887753 245568887 4999999999999999999 8999999999999 578899999999999998653
Q ss_pred cccCcccccccccccccHHHHHHHHHHhc
Q psy13121 90 KTGNGGEYEAQTGFGWTNGFAFELLNRYG 118 (158)
Q Consensus 90 ~~G~gGEY~~q~GFGWTNGV~L~ll~~yg 118 (158)
..|+ ..||||++|+|-|.+.|-
T Consensus 763 g~Ga-------~~FSWTAAvlLml~~~~~ 784 (786)
T PRK10137 763 QQGA-------PNFSWSAAHLYMLYNDFF 784 (786)
T ss_pred ccCC-------CCCChHHHHHHHHHHHHh
Confidence 3332 279999999999998774
No 9
>PF03200 Glyco_hydro_63: Mannosyl oligosaccharide glucosidase; InterPro: IPR004888 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63 (GH63 from CAZY). They catalyse the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase 3.2.1.106 from EC is the first enzyme in the N-linked oligosaccharide processing pathway. ; GO: 0004573 mannosyl-oligosaccharide glucosidase activity, 0009311 oligosaccharide metabolic process
Probab=98.90 E-value=3.5e-09 Score=101.74 Aligned_cols=96 Identities=22% Similarity=0.420 Sum_probs=76.9
Q ss_pred cCCceee-cc----cCCC------CCCCCCCCCchHHHHHHHHHHhcCc------hHHHHHHHHHHHHHHHHHHHHHhhc
Q psy13121 14 LLESTPT-SL----FNST------QQWDYPNAWAPLQAFIIQGLDYTQD------KLAKQVAYRLAEKWLFTNYMGYETS 76 (158)
Q Consensus 14 ~~GGipt-Sl----~~sg------~QWD~PN~WaPlq~i~IeGL~~~G~------~~a~~lA~~lA~rWl~t~~~~~~~t 76 (158)
.+.||.+ |. +..+ -.|..| +|-|+++|+|++|++|+. ..|++++.+|..+-|+++++.|+++
T Consensus 688 s~yGirSLSk~~~~y~~~~~e~d~~YWRGp-IW~~~NyL~i~aL~~y~~~~g~~~~~a~~~y~~Lr~nli~nv~~~~~~t 766 (801)
T PF03200_consen 688 SPYGIRSLSKSDPFYGPGENEHDPSYWRGP-IWIPINYLLIEALRRYGYYYGPYQERAKEIYKELRKNLINNVYKEYKRT 766 (801)
T ss_pred CCCCCccccCCCccccccCCccCCCcccCc-cchhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5899974 21 1222 279999 999999999999999994 4677888899999999999999999
Q ss_pred CceeeeeeeeecccccCcccccccccc-cccHHHHHHHHHHh
Q psy13121 77 KAMFEKYDVELIGKTGNGGEYEAQTGF-GWTNGFAFELLNRY 117 (158)
Q Consensus 77 g~m~EKYdv~~~g~~G~gGEY~~q~GF-GWTNGV~L~ll~~y 117 (158)
|.+||.||..++-..| -..| |||.-|+|.+-+.|
T Consensus 767 g~~~E~Y~~~tG~g~g-------~~~FtGWtslv~~im~e~Y 801 (801)
T PF03200_consen 767 GYFWEQYNPETGRGQG-------AHPFTGWTSLVVLIMAEQY 801 (801)
T ss_pred ccEEEeECCCCCcccC-------CCCCCchHHHHHHHHhccC
Confidence 9999999988543222 2345 79999999887765
No 10
>KOG2161|consensus
Probab=97.76 E-value=8.2e-05 Score=71.74 Aligned_cols=83 Identities=20% Similarity=0.309 Sum_probs=70.4
Q ss_pred CCCCCCCCchHHHHHHHHHHh-cCc------hHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeeeeecccccCccccccc
Q psy13121 28 QWDYPNAWAPLQAFIIQGLDY-TQD------KLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYDVELIGKTGNGGEYEAQ 100 (158)
Q Consensus 28 QWD~PN~WaPlq~i~IeGL~~-~G~------~~a~~lA~~lA~rWl~t~~~~~~~tg~m~EKYdv~~~g~~G~gGEY~~q 100 (158)
.|+.| .|=++.+|+..+|+. |.+ ..|.+++.+|-..-+..+++.|.+||.+||.||-.++. |.| +.
T Consensus 758 YWRGp-IW~N~NYLiLsaL~~~Y~~~~gp~~~nA~~iyeELRaNlv~Nv~k~~~~tG~~wE~Yd~~tG~--G~g----a~ 830 (849)
T KOG2161|consen 758 YWRGP-IWMNVNYLILSALRHFYLYVPGPYQSNAAKIYEELRANLVGNVSKQWQQTGYFWENYDPRTGR--GLG----AR 830 (849)
T ss_pred ccccc-eeeehHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHhhccceeeeecCCCCCC--ccc----cc
Confidence 69998 999999999999999 765 57889999999999999999999999999999988653 222 13
Q ss_pred ccccccHHHHHHHHHHh
Q psy13121 101 TGFGWTNGFAFELLNRY 117 (158)
Q Consensus 101 ~GFGWTNGV~L~ll~~y 117 (158)
.--|||.=|++.+-+.|
T Consensus 831 ~FtGWTaLVl~imse~y 847 (849)
T KOG2161|consen 831 HFTGWTALVLLIMSENY 847 (849)
T ss_pred cccchHHHHHHHHHhcc
Confidence 34699999999887655
No 11
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=94.48 E-value=0.11 Score=49.75 Aligned_cols=89 Identities=15% Similarity=0.140 Sum_probs=66.7
Q ss_pred cCCceeecc-----cCCCCCCCCCCCCchHHHHHHHHHHhcCchHHHH-HHHHHHHHHHHHHHHHHhhcCceeeeeeeee
Q psy13121 14 LLESTPTSL-----FNSTQQWDYPNAWAPLQAFIIQGLDYTQDKLAKQ-VAYRLAEKWLFTNYMGYETSKAMFEKYDVEL 87 (158)
Q Consensus 14 ~~GGiptSl-----~~sg~QWD~PN~WaPlq~i~IeGL~~~G~~~a~~-lA~~lA~rWl~t~~~~~~~tg~m~EKYdv~~ 87 (158)
.+.||.|=- ++...++..| +||.+..|++.|+.|+|. .+ .|.+++++-+.+. .-+.|-|-|+...
T Consensus 512 tp~GlRTLS~~dp~Y~p~yYH~Gt-VWP~~~gifv~g~~r~G~---~~~~~~~~~~~~~~~a-----~~~~~pE~f~g~~ 582 (641)
T COG3408 512 TPWGLRTLSPDDPRYNPMYYHNGT-VWPHDTGIFVLGLRRYGL---KDIQALELFDGLFSSA-----SPGRIPELFDGDS 582 (641)
T ss_pred CCccccccCCCCCCcCCCcccCCC-cccchHHHHHHHHHHcCc---ccHHHHHHHHHHhhhc-----ccCCCcccccccC
Confidence 588987632 2344569995 999999999999999997 44 7888888766554 3478899999887
Q ss_pred cccccCcccccccccccccHHHHHH-HHHHh
Q psy13121 88 IGKTGNGGEYEAQTGFGWTNGFAFE-LLNRY 117 (158)
Q Consensus 88 ~g~~G~gGEY~~q~GFGWTNGV~L~-ll~~y 117 (158)
.+.+.+ +--..|+-|.+|. +++..
T Consensus 583 ~~~P~g------c~~QAWS~a~~l~~~~~~~ 607 (641)
T COG3408 583 PNRPKG------CYPQAWSSAEILRSLLQGL 607 (641)
T ss_pred CCCCCC------cchhhhhHHHHHHHHHHHH
Confidence 663221 4457999999888 77655
No 12
>PF11724 YvbH_ext: YvbH-like oligomerisation region; InterPro: IPR021722 This domain is found at the C terminus of a group of bacterial uncharacterised proteins. This domain is composed of a helical hairpin that appears to mediate oligomerisation based on the known structure. ; PDB: 3B77_D.
Probab=69.43 E-value=2.2 Score=29.47 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc--Cceeeee
Q psy13121 55 KQVAYRLAEKWLFTNYMGYETS--KAMFEKY 83 (158)
Q Consensus 55 ~~lA~~lA~rWl~t~~~~~~~t--g~m~EKY 83 (158)
-+...+.|-.|+......|... |.+||||
T Consensus 28 Fk~ln~~aF~Wl~~~~~~y~~KDFg~VFeKY 58 (61)
T PF11724_consen 28 FKELNEFAFNWLEDHRKQYTVKDFGDVFEKY 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-S--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Confidence 3556678999999999999764 8999999
No 13
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=58.97 E-value=44 Score=32.02 Aligned_cols=65 Identities=14% Similarity=0.122 Sum_probs=49.7
Q ss_pred CCceeeccc------CCCCCCCCCCCCchHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeeeee
Q psy13121 15 LESTPTSLF------NSTQQWDYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYDVEL 87 (158)
Q Consensus 15 ~GGiptSl~------~sg~QWD~PN~WaPlq~i~IeGL~~~G~~~a~~lA~~lA~rWl~t~~~~~~~tg~m~EKYdv~~ 87 (158)
+|++.+|.. ..+.. ||=++|+==+.+++.||...|+ .+.|+ +|+.-..++-..++.+..+|.+..
T Consensus 261 ~G~ivAs~t~~l~~~~~g~~-dY~y~W~RD~~~~~~AL~~~G~---~~~a~----~~f~~l~~~~~~~~~~~~~y~~~g 331 (612)
T COG3387 261 TGAIVASPTTSLPELIGGTR-DYRYVWPRDASYAALALLAIGY---KKEAL----RFFEFLPDVQTPNGKLYHKYSIDG 331 (612)
T ss_pred CCcEEEcCCCCccccCCCCC-CceEEccCcHHHHHHHHHHcCC---HHHHH----HHHHHHHHhhCCCCceeeEEecCC
Confidence 588888762 23444 8889999999999999999999 66554 455555555667788999998875
No 14
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=53.29 E-value=34 Score=21.73 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=24.0
Q ss_pred HHHHHHHhc-CchHHHHHHHHHHHHHHHHH
Q psy13121 41 FIIQGLDYT-QDKLAKQVAYRLAEKWLFTN 69 (158)
Q Consensus 41 i~IeGL~~~-G~~~a~~lA~~lA~rWl~t~ 69 (158)
-+|..|++. ..++-.++|++|..+|-+.+
T Consensus 23 k~V~~l~k~~~~~~i~~~A~~Li~~Wk~~v 52 (53)
T PF08711_consen 23 KAVNKLRKHSENPEIRKLAKELIKKWKRIV 52 (53)
T ss_dssp HHHHHHHHCTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhHhc
Confidence 367788888 88899999999999998765
No 15
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=51.88 E-value=19 Score=33.13 Aligned_cols=44 Identities=27% Similarity=0.460 Sum_probs=34.5
Q ss_pred cCceeeeeeeeec--ccccCccccc---------ccccccccHHH--HHHHHHHhcc
Q psy13121 76 SKAMFEKYDVELI--GKTGNGGEYE---------AQTGFGWTNGF--AFELLNRYGK 119 (158)
Q Consensus 76 tg~m~EKYdv~~~--g~~G~gGEY~---------~q~GFGWTNGV--~L~ll~~yg~ 119 (158)
||.+||-+.-... ++.++||+|. .-.|.|+.-|| ++.+|...+.
T Consensus 272 tg~VFE~~~~~~~~~~sI~gGGRYD~Lv~~~gG~~~pavGFaiGveRl~~~l~~~~~ 328 (429)
T COG0124 272 TGTVFEAVTDGLGAQGSVCGGGRYDGLVEEFGGKPTPAVGFAIGVERLILALEEEGK 328 (429)
T ss_pred cceEEEEEEcCCccccceecCccchHHHHHhCCCCCCceeEehHHHHHHHHHHHcCC
Confidence 7999999876553 4567899995 35788899998 6777888876
No 16
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=44.73 E-value=53 Score=31.81 Aligned_cols=66 Identities=14% Similarity=0.021 Sum_probs=52.3
Q ss_pred cCCceeecccCC-----C--CCCCCCCCCchHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeeee
Q psy13121 14 LLESTPTSLFNS-----T--QQWDYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYDVE 86 (158)
Q Consensus 14 ~~GGiptSl~~s-----g--~QWD~PN~WaPlq~i~IeGL~~~G~~~a~~lA~~lA~rWl~t~~~~~~~tg~m~EKYdv~ 86 (158)
.+|+|.+|+..+ + ..|||=.+|+==-.+++.+|.+.|+ .+.|++ +.+||..+.. .+|...-||.+.
T Consensus 268 ~~GAiIAA~Tts~pe~~g~~~n~dYryvW~RD~a~~a~AL~~~G~---~~~a~~-~~~~l~~~~~---~~G~~lq~y~vd 340 (648)
T TIGR01535 268 NPGAYIASLSIPWGDGQADDNTGGYHLVWPRDLYQVANAFLAAGD---VDSALR-SLDYLAKVQQ---DNGMFPQNSWVD 340 (648)
T ss_pred CCCcEEEecCCCCCccCCCCCCCceEEEehhhHHHHHHHHHHCCC---HHHHHH-HHHHHHHHhc---cCCCcCceeccC
Confidence 469999988432 3 3599999999999999999999999 777765 4667766655 578888888877
No 17
>PF14821 Thr_synth_N: Threonine synthase N terminus; PDB: 3V7N_A 1VB3_A 1KL7_A.
Probab=38.79 E-value=27 Score=24.45 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=24.4
Q ss_pred CCCCCchHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q psy13121 31 YPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWL 66 (158)
Q Consensus 31 ~PN~WaPlq~i~IeGL~~~G~~~a~~lA~~lA~rWl 66 (158)
.|-.+|.+..-.++.|.+..+ .++|.+|...|+
T Consensus 30 vP~~iP~l~~~~l~~l~~~sy---~elA~~il~~f~ 62 (79)
T PF14821_consen 30 VPEEIPKLSKEELEELKNLSY---AELAFEILSPFL 62 (79)
T ss_dssp EESS-----HHHHHHHTTS-H---HHHHHHHHHHHC
T ss_pred ecCcCCCCCHHHHHHHHCCCH---HHHHHHHHHHHH
Confidence 377888899889999999999 999999999987
No 18
>PF06824 DUF1237: Protein of unknown function (DUF1237); InterPro: IPR008313 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2P0V_B 3QSP_B 3QPF_A 3QRY_A 3ON6_A 3QT9_A 3QT3_A 2NVP_A 3P2C_B.
Probab=36.02 E-value=45 Score=30.97 Aligned_cols=66 Identities=23% Similarity=0.400 Sum_probs=38.3
Q ss_pred CCCCchHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeeeeecccccCcccccccccccccHHHHH
Q psy13121 32 PNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYDVELIGKTGNGGEYEAQTGFGWTNGFAF 111 (158)
Q Consensus 32 PN~WaPlq~i~IeGL~~~G~~~a~~lA~~lA~rWl~t~~~~~~~tg~m~EKYdv~~~g~~G~gGEY~~q~GFGWTNGV~L 111 (158)
+++|| .-+++++|-.... .++... -++| .++=..+|.|.|-+|+.++. .|. ..-|.|.|+.+-
T Consensus 357 ~~iWP--msl~~~~lTs~d~---~Ei~~~--L~~L---~~t~~gtGlmHES~d~~~~~------~~T-R~WFaWaNslF~ 419 (424)
T PF06824_consen 357 GYIWP--MSLAMQGLTSDDD---EEIREC--LRML---KRTTAGTGLMHESFDVDDPS------KFT-RPWFAWANSLFG 419 (424)
T ss_dssp TEEEH--HHHHHHHHT-S-H---HHHHHH--HHHH---HHTSTTSSS--SEEETTEEE------EEE--S-BHHHHHHHH
T ss_pred CCccH--HHHHHHHhcCCCH---HHHHHH--HHHH---HhccCCCCceeccccCCCCc------ccC-cHHHHHHHHHHH
Confidence 35665 5677888876544 222222 2223 33334579999999999874 333 356999999988
Q ss_pred HHH
Q psy13121 112 ELL 114 (158)
Q Consensus 112 ~ll 114 (158)
+|+
T Consensus 420 eli 422 (424)
T PF06824_consen 420 ELI 422 (424)
T ss_dssp HHH
T ss_pred HHh
Confidence 876
No 19
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=33.54 E-value=83 Score=21.68 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=24.9
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHH
Q psy13121 41 FIIQGLDYTQDKLAKQVAYRLAEKWLFTN 69 (158)
Q Consensus 41 i~IeGL~~~G~~~a~~lA~~lA~rWl~t~ 69 (158)
..|..|++...++-..+|+.|..+|-+.+
T Consensus 47 ~~V~~Lrkh~~~~i~~~A~~Lv~~Wk~~v 75 (76)
T cd00183 47 KKVNSLRKHSNEKIRKLAKALIKSWKKLV 75 (76)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHhc
Confidence 56888998888999999999999997654
No 20
>COG3538 Uncharacterized conserved protein [Function unknown]
Probab=33.48 E-value=42 Score=31.09 Aligned_cols=69 Identities=25% Similarity=0.371 Sum_probs=45.9
Q ss_pred CCCchHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeeeeecccccCcccccccccccccHHHHHH
Q psy13121 33 NAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYDVELIGKTGNGGEYEAQTGFGWTNGFAFE 112 (158)
Q Consensus 33 N~WaPlq~i~IeGL~~~G~~~a~~lA~~lA~rWl~t~~~~~~~tg~m~EKYdv~~~g~~G~gGEY~~q~GFGWTNGV~L~ 112 (158)
++|| .-++|+||-.....+ -++|-. ||. +.-.-||.|.|-+||.++.. |. .+=|-|.|..+-+
T Consensus 355 yvWp--iaLaiqgLTa~D~~e----k~~iL~-~L~---~tdaGTg~MHE~f~vd~P~~------fT-R~WFsWAN~mF~E 417 (434)
T COG3538 355 YVWP--IALAIQGLTANDDSE----KKEILD-MLK---ATDAGTGLMHEGFDVDDPEQ------FT-REWFSWANMMFCE 417 (434)
T ss_pred ccch--HHHHHhhcccCChHH----HHHHHH-HHH---hccCCccceecccCCCCHHH------hh-hHHHHHHHHHHHH
Confidence 6776 578999998887622 222221 222 22234799999999998853 22 4569999999888
Q ss_pred HHHHhc
Q psy13121 113 LLNRYG 118 (158)
Q Consensus 113 ll~~yg 118 (158)
|+-.|.
T Consensus 418 lild~~ 423 (434)
T COG3538 418 LILDLA 423 (434)
T ss_pred HHHHHh
Confidence 766553
No 21
>PRK15444 pduC propanediol dehydratase large subunit; Provisional
Probab=29.34 E-value=64 Score=30.66 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=34.6
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhcCcee-eeeeeeec
Q psy13121 42 IIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMF-EKYDVELI 88 (158)
Q Consensus 42 ~IeGL~~~G~~~a~~lA~~lA~rWl~t~~~~~~~tg~m~-EKYdv~~~ 88 (158)
+|++|.+.|+ +++|..|-.--=..+.--|.+|..|| |+|+|...
T Consensus 473 iVkaL~~~Gf---~dvAe~il~m~kqrv~GDyLqTSAi~d~~~~v~Sa 517 (554)
T PRK15444 473 VVKALAKGGF---TDVAENILNMLKQRVTGDYLQTSAIIDEDFNVLSA 517 (554)
T ss_pred HHHHHHHcCC---hHHHHHHHHHHHHHhhcchhhhhhhhcCCCcEEec
Confidence 6889999999 88888776555556777788898888 88988754
No 22
>PF02286 Dehydratase_LU: Dehydratase large subunit; InterPro: IPR003206 This entry represents the large subunit of adenosylcobalamin-dependent diol dehydratases (4.2.1.28 from EC) and glycerol dehydratases (4.2.1.30 from EC). These enzymes are produced by some enterobacteria in response to growth substances. The enzyme have an TIM beta/alpha barrel fold []. Inactivated holoenzymes are reactivated by their own reactivating factors that mediate the ATP-dependent exchange of an enzyme-bound, damaged cofactor for free adenosylcobalamin through intermediary formation of apoenzyme. The reactivation takes place in two steps: (a) ADP-dependent cobalamin release and (b) ATP-dependent dissociation of the resulting apoenzyme-reactivating factor complexes [].; GO: 0016836 hydro-lyase activity, 0031419 cobalamin binding, 0050215 propanediol dehydratase activity, 0006071 glycerol metabolic process, 0008152 metabolic process; PDB: 1MMF_A 1IWP_A 1UC4_A 1IWB_L 1EGM_L 1EGV_A 3AUJ_L 1DIO_L 1UC5_A 1EEX_L ....
Probab=28.06 E-value=66 Score=30.56 Aligned_cols=44 Identities=20% Similarity=0.212 Sum_probs=32.4
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhcCcee-eeeeeeec
Q psy13121 42 IIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMF-EKYDVELI 88 (158)
Q Consensus 42 ~IeGL~~~G~~~a~~lA~~lA~rWl~t~~~~~~~tg~m~-EKYdv~~~ 88 (158)
+|++|.+.|+ +++|..|-.-.-..+.--|.+|..++ |+|+|..-
T Consensus 473 ivkaL~~~Gf---~dvAe~il~m~kqrvsGDyLqTSAi~d~~~~v~SA 517 (554)
T PF02286_consen 473 IVKALAKRGF---RDVAENILNMLKQRVSGDYLQTSAIFDEDFNVISA 517 (554)
T ss_dssp HHHHHHCTT----HHHHHHHHHHHCHHHH-GGGSTT-EEETTTEEE-T
T ss_pred HHHHHHhcCC---HHHHHHHHHHHHHHhccchhhhhhhhcCCCcEEee
Confidence 6889999999 88888876665566777789999988 88988754
No 23
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=27.51 E-value=1e+02 Score=27.16 Aligned_cols=54 Identities=15% Similarity=0.011 Sum_probs=39.6
Q ss_pred CCCCCCCCchHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhh--cCceeeeee
Q psy13121 28 QWDYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYET--SKAMFEKYD 84 (158)
Q Consensus 28 QWD~PN~WaPlq~i~IeGL~~~G~~~a~~lA~~lA~rWl~t~~~~~~~--tg~m~EKYd 84 (158)
+...+ +||=+.-++++||.++|.. .+.|.+++.+.+........+ -+.+-|-||
T Consensus 293 YHnGs-vWpw~~g~~~~al~r~g~~--~~~~~~~~~~ll~~~~~~~~~~~~~~lpEl~d 348 (370)
T PF06202_consen 293 YHNGS-VWPWDNGIYAEALLRYGFD--EEEAIREAKSLLEGFEEHLQEFGLGRLPELFD 348 (370)
T ss_pred ccCCC-cCcCcHHHHHHHHHHhCcc--chHHHHHHHHHHHHHHHHHhhccCCCcchhcC
Confidence 45565 8998999999999999992 256666677777655444433 478999998
No 24
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=27.49 E-value=3.8e+02 Score=25.26 Aligned_cols=64 Identities=14% Similarity=0.217 Sum_probs=47.1
Q ss_pred CceeecccCC---CCCCCCCCCCchHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeeee
Q psy13121 16 ESTPTSLFNS---TQQWDYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYDVE 86 (158)
Q Consensus 16 GGiptSl~~s---g~QWD~PN~WaPlq~i~IeGL~~~G~~~a~~lA~~lA~rWl~t~~~~~~~tg~m~EKYdv~ 86 (158)
|+|.+|...+ .+-|||-.+|+==..+++.+|...|+ .++|++. .+||... -..+|...-+|.+.
T Consensus 274 GaiiAs~s~~~~~~~~~~Y~y~W~RD~~~~a~Al~~~G~---~~~a~~~-l~~l~~~---q~~~G~~~~~~~~d 340 (616)
T TIGR01577 274 GSMIAAPEFDEDFVRCGGYAYCWGRDASYIATALDRAGY---HDRVDRF-FRWAMQT---QSRDGSWQQRYYLN 340 (616)
T ss_pred CcEEEcCCCCcccccCCCCceeccccHHHHHHHHHHCCC---HHHHHHH-HHHHHHh---hCcCCCcceEEecC
Confidence 8887776422 33599999999888899999999999 6776665 4455444 34678888888744
No 25
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=27.19 E-value=1.3e+02 Score=20.83 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=25.2
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHH
Q psy13121 41 FIIQGLDYTQDKLAKQVAYRLAEKWLFTN 69 (158)
Q Consensus 41 i~IeGL~~~G~~~a~~lA~~lA~rWl~t~ 69 (158)
..+..|++...++-..+|++|..+|-..+
T Consensus 45 ~~v~~Lrkh~~~~I~~~A~~Li~~WK~~v 73 (75)
T smart00509 45 KKVNGLRKHKNEEIRKLAKKLIKSWKKLV 73 (75)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 56888999888888999999999998765
No 26
>KOG2886|consensus
Probab=23.54 E-value=39 Score=28.52 Aligned_cols=39 Identities=33% Similarity=0.400 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHhh---cCceeeeeeeeecccccCccc
Q psy13121 56 QVAYRLAEKWLFTNYMGYET---SKAMFEKYDVELIGKTGNGGE 96 (158)
Q Consensus 56 ~lA~~lA~rWl~t~~~~~~~---tg~m~EKYdv~~~g~~G~gGE 96 (158)
++-.-+..-.+..+.+.|.+ +..|||+|.+++- .|.|||
T Consensus 114 Q~~~L~ls~~m~~vna~~l~pr~tkaM~el~k~Eke--~G~G~e 155 (209)
T KOG2886|consen 114 QMVNLLLSAGMEEVNASFLEPRATKAMFELYKAEKE--IGRGGE 155 (209)
T ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh--hCCCCC
Confidence 33333344455666677766 5789999999865 455664
No 27
>PF12899 Glyco_hydro_100: Alkaline and neutral invertase; InterPro: IPR024746 This is a family of endo-alpha-N-acetylgalactosaminidases. This is a unique enzyme that hydrolyses core 1-type O-glycan from glycoproteins. The proteins are produced in the gut-flora bacteria from Actinobacteria and Firmicutes [].; GO: 0033926 glycopeptide alpha-N-acetylgalactosaminidase activity
Probab=22.77 E-value=2.9e+02 Score=25.94 Aligned_cols=76 Identities=21% Similarity=0.254 Sum_probs=46.9
Q ss_pred CCCCCCCC--CCchHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeeeeecccccCcccccccccc
Q psy13121 26 TQQWDYPN--AWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYDVELIGKTGNGGEYEAQTGF 103 (158)
Q Consensus 26 g~QWD~PN--~WaPlq~i~IeGL~~~G~~~a~~lA~~lA~rWl~t~~~~~~~tg~m~EKYdv~~~g~~G~gGEY~~q~GF 103 (158)
..-|.|=| .||=+-|+.+-++.+.|. .++|++.-.. ..+--. ....-|-||-.++...|. ..+..=
T Consensus 352 N~PwsYHNGG~WP~LlW~~~aA~ik~gr---~~lA~~al~~----a~~rL~-~dewpEyydGktGrp~Gk----qar~~Q 419 (436)
T PF12899_consen 352 NTPWSYHNGGSWPVLLWFLTAALIKMGR---PELAERALEA----AENRLS-KDEWPEYYDGKTGRPMGK----QARKYQ 419 (436)
T ss_pred ccccccccCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHH----HHHhhc-ccCCcccccCCCCCcccc----cccccC
Confidence 34466666 799999999999999999 5555543222 211111 234678887554432232 112457
Q ss_pred cccHHHHHHH
Q psy13121 104 GWTNGFAFEL 113 (158)
Q Consensus 104 GWTNGV~L~l 113 (158)
.||.+.+|-.
T Consensus 420 TWSaAgyLlA 429 (436)
T PF12899_consen 420 TWSAAGYLLA 429 (436)
T ss_pred chHHHHHHHH
Confidence 8999987743
No 28
>cd03687 Dehydratase_LU Dehydratase large subunit. This family contains the large (alpha) subunit of B12-dependent glycerol dehydratases (GDHs) and B12-dependent diol dehydratases (DDHs). GDH is isofunctional with DDH. These enzymes can each catalyze the conversion of 1,2-propanediol, glycerol, and 1,2-ethanediol to the corresponding aldehydes via a coenzyme B12 (adenosylcobalamin)-dependent radical mechanism. Both enzymes exhibit a subunit composition of alpha2beta2gamma2. The enzymes differ in substrate specificity; glycerol is the preferred substrate for GDH and 1,2-propanediol for DDH. GDH shows almost equal affinity for both (R) and (S)-isomers while DDH prefers the (S) isomer. GDH plays a key role in the dihydroxyacetone (DHA) pathway and DDH in the anaerobic degradation of 1,2-diols. The radical mechanism has been well studied for Klebsiella oxytoca DDH and involves binding of 1,2-propanediol to the enzyme to induce hemolytic cleavage of the Co-C5' bond of the coenzyme to form co
Probab=20.81 E-value=1.2e+02 Score=28.77 Aligned_cols=44 Identities=11% Similarity=0.072 Sum_probs=33.8
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhcCceeee-eeeeec
Q psy13121 42 IIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEK-YDVELI 88 (158)
Q Consensus 42 ~IeGL~~~G~~~a~~lA~~lA~rWl~t~~~~~~~tg~m~EK-Ydv~~~ 88 (158)
+|++|.+.|+ +++|..|-.--=..+.--|.+|..||.| |+|...
T Consensus 466 vVkaL~~~Gf---~dvAe~il~m~kqrv~GDyLqTSAi~d~~~~v~Sa 510 (545)
T cd03687 466 VVKALARGGF---TDEAENILNMLKQRLTGDYLQTSAIIDDDFQVLSA 510 (545)
T ss_pred HHHHHHHcCC---hHHHHHHHHHHHHHhhhhhhhhhhhhcCCCcEEec
Confidence 6889999999 8888877665555667778888888876 887644
Done!