Query psy13121
Match_columns 158
No_of_seqs 138 out of 529
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 20:10:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13121.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13121hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jg0_A Periplasmic trehalase; 100.0 7.6E-29 2.6E-33 223.6 10.1 111 14-127 402-512 (535)
2 2z07_A Putative uncharacterize 99.7 3.4E-18 1.2E-22 146.4 7.1 85 14-114 330-419 (420)
3 3c68_A Uncharacterized protein 99.5 2.1E-14 7.1E-19 134.5 6.0 95 14-120 661-760 (761)
4 2okx_A Rhamnosidase B; alpha b 96.1 0.0053 1.8E-07 58.3 5.0 76 33-117 800-876 (956)
5 3cih_A Putative alpha-rhamnosi 95.7 0.021 7.3E-07 52.6 7.3 81 31-117 552-636 (739)
6 2p0v_A Hypothetical protein BT 66.7 5.5 0.00019 36.1 4.3 71 32-119 400-470 (489)
7 3p2c_A Putative glycosyl hydro 66.1 4.9 0.00017 36.2 3.9 71 33-120 383-453 (463)
8 3qt9_A Putative uncharacterize 52.1 11 0.00038 33.6 3.6 71 33-120 355-425 (427)
9 1v7w_A Chitobiose phosphorylas 41.8 11 0.00037 34.6 2.0 34 24-66 637-670 (807)
10 3qry_B Putative uncharacterize 40.4 20 0.00067 32.0 3.3 68 33-117 355-422 (426)
11 1e17_A AFX; DNA binding domain 36.6 16 0.00055 28.2 2.0 64 32-101 37-121 (150)
12 2fba_A Glucoamylase Glu1; (alp 36.4 26 0.00089 31.1 3.5 53 14-68 48-101 (492)
13 1lf6_A Glucoamylase; (alpha/al 35.7 30 0.001 31.5 3.9 79 25-118 586-667 (684)
14 3bpy_A FORK head domain, forkh 28.7 16 0.00056 25.3 0.7 39 33-74 3-43 (85)
15 2vn4_A Glucoamylase; hydrolase 28.2 59 0.002 29.5 4.5 49 14-68 32-84 (599)
16 1gai_A Glucoamylase-471; hydro 24.6 52 0.0018 29.1 3.3 67 14-86 33-111 (472)
17 1bh9_B TAFII28; histone fold, 24.2 1.2E+02 0.004 21.1 4.5 43 37-79 36-88 (89)
18 3b77_A Uncharacterized protein 23.2 45 0.0015 26.8 2.4 26 58-83 163-190 (193)
19 1lf6_A Glucoamylase; (alpha/al 21.1 1.1E+02 0.0038 27.7 4.9 64 15-85 314-384 (684)
20 3rac_A Histidine-tRNA ligase; 20.6 37 0.0013 28.8 1.5 43 76-118 315-367 (373)
No 1
>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ; 1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A* 2jjb_A* 2wyn_A*
Probab=99.95 E-value=7.6e-29 Score=223.57 Aligned_cols=111 Identities=37% Similarity=0.603 Sum_probs=103.8
Q ss_pred cCCceeecccCCCCCCCCCCCCchHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeeeeecccccC
Q psy13121 14 LLESTPTSLFNSTQQWDYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYDVELIGKTGN 93 (158)
Q Consensus 14 ~~GGiptSl~~sg~QWD~PN~WaPlq~i~IeGL~~~G~~~a~~lA~~lA~rWl~t~~~~~~~tg~m~EKYdv~~~g~~G~ 93 (158)
.+|||+|+..++++|||+||+|||+|+|+|+||++||+ .++|++|+++|+.++.+.|.++|.|+||||+..+...|+
T Consensus 402 t~~GlrT~s~~s~~yW~GpNvW~~~~~l~i~gL~~yG~---~~~A~~la~~~l~~~~~~~~~~G~l~E~yd~~~~~~~G~ 478 (535)
T 2jg0_A 402 QPGGLNTTSVKSGQQWDAPNGWAPLQWVATEGLQNYGQ---KEVAMDISWHFLTNVQHTYDREKKLVEKYDVSTTGTGGG 478 (535)
T ss_dssp ETTEECSBSCCCSSSSSTTEECHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHHHHHHHHSSCBSCEETTSSSCBCC
T ss_pred cCCCCCCCcCCCccccCCCCcchhHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHhccCCeeeeeECCCCCCCCCC
Confidence 58999999999999999999999999999999999999 999999999999999999999999999999997766778
Q ss_pred cccccccccccccHHHHHHHHHHhcccccCCCCC
Q psy13121 94 GGEYEAQTGFGWTNGFAFELLNRYGKTISFNNTQ 127 (158)
Q Consensus 94 gGEY~~q~GFGWTNGV~L~ll~~yg~~l~~~~~~ 127 (158)
||||++|.+|||||||+|.|+++|++.++.|...
T Consensus 479 ggeY~~~~~fgWT~av~l~ll~~y~~~~~~~~~~ 512 (535)
T 2jg0_A 479 GGEYPLQDGFGWTNGVTLKMLDLICPKEQPCDNV 512 (535)
T ss_dssp CSSSCCCBSCHHHHHHHHHHHHHHSCSSSCCSSC
T ss_pred CCCCCCCCCChhHHHHHHHHHHHhhhhccCCccc
Confidence 8999999999999999999999999987655433
No 2
>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=99.73 E-value=3.4e-18 Score=146.44 Aligned_cols=85 Identities=24% Similarity=0.361 Sum_probs=71.2
Q ss_pred cCCceeecc-----cCCCCCCCCCCCCchHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeeeeec
Q psy13121 14 LLESTPTSL-----FNSTQQWDYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYDVELI 88 (158)
Q Consensus 14 ~~GGiptSl-----~~sg~QWD~PN~WaPlq~i~IeGL~~~G~~~a~~lA~~lA~rWl~t~~~~~~~tg~m~EKYdv~~~ 88 (158)
.++||+|.. .++++|||+| +|||+|+++++||+++|+ .++|++|+++|+.++. ++.|+||||+..+
T Consensus 330 ~~~gi~t~~~~~~~y~~~~yw~gp-vW~~~~~~~~~gL~~~G~---~~~A~~l~~~~~~~~~-----~~~~~E~yd~~~g 400 (420)
T 2z07_A 330 ARYLLPSVDPTSPFFEPGRYWRGP-VWINVNWMVAEGFRDYGF---AALAARLKADALALME-----REGFREYYDPLTG 400 (420)
T ss_dssp CSSSCBSBCTTSTTCCTTSTTSSC-BCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH-----HHCSEEEECTTTC
T ss_pred CCCCcCcCCCcCcccCCcCCCCCC-cchhHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHh-----cCCeeeeeCCCCC
Confidence 578887743 2456999999 999999999999999999 9999999999999884 3789999999853
Q ss_pred ccccCcccccccccccccHHHHHHHH
Q psy13121 89 GKTGNGGEYEAQTGFGWTNGFAFELL 114 (158)
Q Consensus 89 g~~G~gGEY~~q~GFGWTNGV~L~ll 114 (158)
. +.|+ .+|||||||+|.||
T Consensus 401 -~-~~g~-----~~fgWs~~~~l~ll 419 (420)
T 2z07_A 401 -Q-GRGG-----EGFSWSAALALFWT 419 (420)
T ss_dssp -C-EEEE-----ESCHHHHHHHHHHT
T ss_pred -C-cCCC-----CCCchHHHHHHHHh
Confidence 2 2222 58999999999987
No 3
>3c68_A Uncharacterized protein YGJK; GH63, processing alpha-glucosidase, alpha/alpha barrel, hydrolase; HET: BMA; 1.50A {Escherichia coli} PDB: 3c67_A* 2ds3_A* 3c69_A* 3d3i_A
Probab=99.48 E-value=2.1e-14 Score=134.46 Aligned_cols=95 Identities=17% Similarity=0.329 Sum_probs=80.5
Q ss_pred cCCceeeccc-----CCCCCCCCCCCCchHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeeeeec
Q psy13121 14 LLESTPTSLF-----NSTQQWDYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYDVELI 88 (158)
Q Consensus 14 ~~GGiptSl~-----~sg~QWD~PN~WaPlq~i~IeGL~~~G~~~a~~lA~~lA~rWl~t~~~~~~~tg~m~EKYdv~~~ 88 (158)
.++||++... .++.||+.| +|+|++++++++|.++|. .++|.+|+.+|+.. +..+.++|.|+|+||+..+
T Consensus 661 t~~Girtls~~~p~y~p~~yw~Gp-vW~~~~~lli~aL~~~G~---~d~A~~l~~~~~~~-~~~~~~~G~~~E~yd~~tg 735 (761)
T 3c68_A 661 TFVPLGTAALTNPAFGADIYWRGR-VWVDQFWFGLKGMERYGY---RDDALKLADTFFRH-AKGLTADGPIQENYNPLTG 735 (761)
T ss_dssp CSSCSCSSCTTCTTCCTTCTTTTC-EEHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH-STTTTSSSCCCSEECTTTC
T ss_pred CCCCccccCCCCcccCCCccccCC-cccchHHHHHHHHHHcCC---HHHHHHHHHHHHHH-HHHHhhCCceeeEecCCCC
Confidence 5889997543 468999999 999999999999999999 99999999999874 4567778999999999764
Q ss_pred ccccCcccccccccccccHHHHHHHHHHhccc
Q psy13121 89 GKTGNGGEYEAQTGFGWTNGFAFELLNRYGKT 120 (158)
Q Consensus 89 g~~G~gGEY~~q~GFGWTNGV~L~ll~~yg~~ 120 (158)
...| -.+|||||||+|.++++|+.+
T Consensus 736 ~p~G-------~~~fgWSaa~~l~ll~~y~~~ 760 (761)
T 3c68_A 736 AQQG-------APNFSWSAAHLYMLYNDFFRK 760 (761)
T ss_dssp CEES-------CSSCHHHHHHHHHHHHHTCCC
T ss_pred CcCc-------CCCchHHHHHHHHHHHHHhcc
Confidence 3222 278999999999999999864
No 4
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP}
Probab=96.08 E-value=0.0053 Score=58.31 Aligned_cols=76 Identities=8% Similarity=0.092 Sum_probs=53.3
Q ss_pred CCCchHHHHHHHHHHhcCchHHHHHHHHHHHH-HHHHHHHHHhhcCceeeeeeeeecccccCcccccccccccccHHHHH
Q psy13121 33 NAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEK-WLFTNYMGYETSKAMFEKYDVELIGKTGNGGEYEAQTGFGWTNGFAF 111 (158)
Q Consensus 33 N~WaPlq~i~IeGL~~~G~~~a~~lA~~lA~r-Wl~t~~~~~~~tg~m~EKYdv~~~g~~G~gGEY~~q~GFGWTNGV~L 111 (158)
..| | +++++++|.++|. .+.|.++..+ |..++.. ..+.++|.||...++... ++.+.....|+|++|++.
T Consensus 800 t~w-~-~~~li~aLar~G~---~d~A~~ll~~~~~~~~~~---g~tt~~E~~d~~~~~~~~-~~~~~~s~nh~Wsag~~~ 870 (956)
T 2okx_A 800 SPF-M-SFFYYEALEKAGR---QTLMLDDIRRNYGQMLRY---DATTCWEMYPNFAENRSN-PDMLTRSHCHAWSAAPGY 870 (956)
T ss_dssp SHH-H-HHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHT---TCSSCCSSCSSCCTTSSS-TTSSCSCSCCGGGCTHHH
T ss_pred Chh-H-HHHHHHHHHHCCC---HHHHHHHHHHHHHHHHhc---CCCccceeccCCCCCccc-CCCcccccCcHHHHHHHH
Confidence 367 4 4899999999999 8888888754 4444421 124799999987553221 123333567999999999
Q ss_pred HHHHHh
Q psy13121 112 ELLNRY 117 (158)
Q Consensus 112 ~ll~~y 117 (158)
+|++..
T Consensus 871 ~L~q~l 876 (956)
T 2okx_A 871 FLGSSI 876 (956)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 998765
No 5
>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure initiative II, NYSGXRC, (alpha/alpha)6 barrel domain; 2.33A {Bacteroides thetaiotaomicron vpi-5482}
Probab=95.72 E-value=0.021 Score=52.58 Aligned_cols=81 Identities=15% Similarity=0.215 Sum_probs=54.7
Q ss_pred CCCCCchHHHHHHHHHHhcCchHHHHHHHHHHHH-HHHHHHHHHhhcCceeeeeeeeeccc--cc-Cccccccccccccc
Q psy13121 31 YPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEK-WLFTNYMGYETSKAMFEKYDVELIGK--TG-NGGEYEAQTGFGWT 106 (158)
Q Consensus 31 ~PN~WaPlq~i~IeGL~~~G~~~a~~lA~~lA~r-Wl~t~~~~~~~tg~m~EKYdv~~~g~--~G-~gGEY~~q~GFGWT 106 (158)
+.+++|.++++++++|.++|. .+.|.++..+ |..++.. ....|||+||+...+. .. -|..|.+..-++|.
T Consensus 552 ~~~~tp~~~~~~~~aL~~~G~---~d~A~~ll~~~w~~~v~~---Gattl~E~~~~~~~~~~~~~~~g~~~~~s~~HaW~ 625 (739)
T 3cih_A 552 LKITTPYMRFYELEALCALGE---QETVMKEMKAYWGGMLKA---GATSFWEKYNPEESGTQHLAMYGRPYGKSLCHAWG 625 (739)
T ss_dssp CCCCSHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHTT---TCSSCCSCCCTTCCGGGGGCBTTBTTCSCSSBGGG
T ss_pred ccccchhHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhC---CCceeEEecccccCCcccccccccccCcccccccc
Confidence 467899999999999999999 8889887644 4443321 1236999999863211 10 12223344456899
Q ss_pred HHHHHHHHHHh
Q psy13121 107 NGFAFELLNRY 117 (158)
Q Consensus 107 NGV~L~ll~~y 117 (158)
.|+..+|++..
T Consensus 626 ag~~~~l~~~i 636 (739)
T 3cih_A 626 ASPIYLLGKYY 636 (739)
T ss_dssp CTHHHHHHHHT
T ss_pred cchHHHHHHHH
Confidence 99988887653
No 6
>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8
Probab=66.70 E-value=5.5 Score=36.11 Aligned_cols=71 Identities=15% Similarity=0.269 Sum_probs=45.5
Q ss_pred CCCCchHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeeeeecccccCcccccccccccccHHHHH
Q psy13121 32 PNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYDVELIGKTGNGGEYEAQTGFGWTNGFAF 111 (158)
Q Consensus 32 PN~WaPlq~i~IeGL~~~G~~~a~~lA~~lA~rWl~t~~~~~~~tg~m~EKYdv~~~g~~G~gGEY~~q~GFGWTNGV~L 111 (158)
-|.||= -+++++|. .+. .+.++++- +||.. .=..+|.|.|-+|+.++. .|. ..-|.|.|+.+.
T Consensus 400 ~~~Wpm--sll~~alt-s~d---~~E~~~~L-~~l~~---t~~gtGLmhEs~d~~~~~------~~T-R~wFaWanslF~ 462 (489)
T 2p0v_A 400 DMIWPM--SIMMKAFT-SQN---DAEIKTCI-KMLMD---TDAGTGFMHESFNKNDPK------NFT-RAWFAWQNTLFG 462 (489)
T ss_dssp TEECHH--HHHHHHHT-CCC---HHHHHHHH-HHHHH---TSTTSCSCCSEEETTEEE------EEE-CSCBHHHHHHHH
T ss_pred CchHHH--HHHHHHHh-cCC---HHHHHHHH-HHHHh---hCCCCCeeeeeECCCCCC------cCC-CcccHHHHHHHH
Confidence 467864 44555544 555 45554443 33332 224589999999998764 333 456999999999
Q ss_pred HHHHHhcc
Q psy13121 112 ELLNRYGK 119 (158)
Q Consensus 112 ~ll~~yg~ 119 (158)
+++-++-+
T Consensus 463 e~il~l~~ 470 (489)
T 2p0v_A 463 ELILKLVN 470 (489)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 88877733
No 7
>3p2c_A Putative glycosyl hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE PGE; 1.60A {Bacteroides ovatus} SCOP: a.102.1.8 PDB: 3on6_A*
Probab=66.14 E-value=4.9 Score=36.21 Aligned_cols=71 Identities=14% Similarity=0.225 Sum_probs=45.5
Q ss_pred CCCchHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeeeeecccccCcccccccccccccHHHHHH
Q psy13121 33 NAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYDVELIGKTGNGGEYEAQTGFGWTNGFAFE 112 (158)
Q Consensus 33 N~WaPlq~i~IeGL~~~G~~~a~~lA~~lA~rWl~t~~~~~~~tg~m~EKYdv~~~g~~G~gGEY~~q~GFGWTNGV~L~ 112 (158)
|.||=- +++++|..- . .+.++++- +||. +.=..+|.|.|-+|+.++. .|. ..=|.|.|+.+.+
T Consensus 383 ~~Wpms--ll~~~lTs~-d---~~Ei~~~L-~~l~---~t~~gtGlmHEsvd~~~~~------~~T-R~WFaWaNs~F~e 445 (463)
T 3p2c_A 383 MVWPMS--IMMKAFTSQ-N---DAEIKTCI-KMLM---DTDAGTGFMHESFHKDNPK------KFT-RAWFAWQNTLFGE 445 (463)
T ss_dssp EECHHH--HHHHHHTCC-C---HHHHHHHH-HHHH---HTSTTSSSCCSEEETTEEE------EEE-CSCBHHHHHHHHH
T ss_pred CchHHH--HHHHHhccC-C---HHHHHHHH-HHHH---hcCCCCCeeeeeECCCCCC------cCC-CCchhhhhHHHHH
Confidence 578633 336666544 4 34444442 3443 3344689999999999764 333 3459999999888
Q ss_pred HHHHhccc
Q psy13121 113 LLNRYGKT 120 (158)
Q Consensus 113 ll~~yg~~ 120 (158)
++-++.++
T Consensus 446 lil~l~~~ 453 (463)
T 3p2c_A 446 LILKLVNE 453 (463)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHcc
Confidence 88776543
No 8
>3qt9_A Putative uncharacterized protein CPE0426; alpha-alpha six fold, glycoside hydrolase, mannosidase, HYDR; HET: YDR; 2.05A {Clostridium perfringens} SCOP: a.102.1.8 PDB: 3qt3_A* 2nvp_A
Probab=52.13 E-value=11 Score=33.60 Aligned_cols=71 Identities=20% Similarity=0.281 Sum_probs=45.5
Q ss_pred CCCchHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeeeeecccccCcccccccccccccHHHHHH
Q psy13121 33 NAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYDVELIGKTGNGGEYEAQTGFGWTNGFAFE 112 (158)
Q Consensus 33 N~WaPlq~i~IeGL~~~G~~~a~~lA~~lA~rWl~t~~~~~~~tg~m~EKYdv~~~g~~G~gGEY~~q~GFGWTNGV~L~ 112 (158)
|.||= -+++++|..-.. +.++++- +|| .+.-..+|.|.|-+|+.++. .|. ..-|.|.|+.+-+
T Consensus 355 ~~Wpm--sl~~~~lTs~d~----~Ei~~~L-~~l---~~t~~gtGlmHEsvd~~~~~------~~T-R~WFaWaN~lF~e 417 (427)
T 3qt9_A 355 YIWHI--ALSMQGLTTNNQ----EEIDQLI-KLL---KETDAGTGYMHEGFHVDDPT------KFT-RDWFAWSNSLFSH 417 (427)
T ss_dssp EEEHH--HHHHHHHTCCCH----HHHHHHH-HHH---HHTSTTSSSCCSEEETTEEE------EES-CSCBHHHHHHHHH
T ss_pred CchHH--HHHHHHhhcCCH----HHHHHHH-HHH---HhcCCCCCeeeeeECCCCCC------ccC-CCcchhhhHHHHH
Confidence 57753 334666655443 4443332 333 33344689999999999764 444 3459999999999
Q ss_pred HHHHhccc
Q psy13121 113 LLNRYGKT 120 (158)
Q Consensus 113 ll~~yg~~ 120 (158)
++-++-++
T Consensus 418 lil~l~~~ 425 (427)
T 3qt9_A 418 FIYEKVIN 425 (427)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHHh
Confidence 98777554
No 9
>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*
Probab=41.79 E-value=11 Score=34.55 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=26.8
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q psy13121 24 NSTQQWDYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWL 66 (158)
Q Consensus 24 ~sg~QWD~PN~WaPlq~i~IeGL~~~G~~~a~~lA~~lA~rWl 66 (158)
+.|.||..+|.| ++++|.++|. .+.|.++..++.
T Consensus 637 enG~~~~~~~~w------~~~al~~~G~---~d~A~~l~~~~~ 670 (807)
T 1v7w_A 637 ENGAIFSHPNPW------AWVAETKLGR---GDRAMKFYDALN 670 (807)
T ss_dssp TBTSEESTTHHH------HHHHHHHTTC---HHHHHHHHHHHC
T ss_pred cccccccchHHH------HHHHHHHcCC---HHHHHHHHHHhC
Confidence 356777777666 5789999999 899999977763
No 10
>3qry_B Putative uncharacterized protein; alpha-alpha six fold, glycoside hydrolase, mannosidase, 1- deoxymannojirimycin, hydrolase; HET: DMJ; 1.75A {Streptococcus pneumoniae} SCOP: a.102.1.0 PDB: 3qpf_A* 3qsp_A*
Probab=40.39 E-value=20 Score=31.97 Aligned_cols=68 Identities=26% Similarity=0.337 Sum_probs=44.0
Q ss_pred CCCchHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeeeeecccccCcccccccccccccHHHHHH
Q psy13121 33 NAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYDVELIGKTGNGGEYEAQTGFGWTNGFAFE 112 (158)
Q Consensus 33 N~WaPlq~i~IeGL~~~G~~~a~~lA~~lA~rWl~t~~~~~~~tg~m~EKYdv~~~g~~G~gGEY~~q~GFGWTNGV~L~ 112 (158)
|.||= -+++++|-.... ++++++- +||. +.=..+|.|.|-+|+.++. .|.++= |.|.|+.+-+
T Consensus 355 ~~Wpm--sl~~~~lTs~d~----~Ei~~~L-~~l~---~t~~gtGlmHEsvd~~~~~------~~TR~W-FaWaN~lF~e 417 (426)
T 3qry_B 355 YIWPI--ALSIQGLTTRDK----AEKKFLL-DQLV---ACDGGTGVMHESFHVDDPT------LYSREW-FSWANMMFCE 417 (426)
T ss_dssp EECHH--HHHHHHHTCSCH----HHHHHHH-HHHH---HTSTTSSSCCSEEETTEEE------EEECSC-CHHHHHHHHH
T ss_pred CchHH--HHHHHHHhCCCH----HHHHHHH-HHHH---hcCCCCCeeeeeECCCCCC------ccCCCc-hhhhhHHHHH
Confidence 57863 334777766544 3333322 3333 3334579999999999764 455444 9999999888
Q ss_pred HHHHh
Q psy13121 113 LLNRY 117 (158)
Q Consensus 113 ll~~y 117 (158)
++-++
T Consensus 418 lil~~ 422 (426)
T 3qry_B 418 LVLDY 422 (426)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87655
No 11
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP: a.4.5.14
Probab=36.62 E-value=16 Score=28.17 Aligned_cols=64 Identities=19% Similarity=0.365 Sum_probs=40.7
Q ss_pred CCCCchHHH--HHHHHHHhcCchHHHHHHHHHHHHHHHHHH------------HHHhh-------cCceeeeeeeeeccc
Q psy13121 32 PNAWAPLQA--FIIQGLDYTQDKLAKQVAYRLAEKWLFTNY------------MGYET-------SKAMFEKYDVELIGK 90 (158)
Q Consensus 32 PN~WaPlq~--i~IeGL~~~G~~~a~~lA~~lA~rWl~t~~------------~~~~~-------tg~m~EKYdv~~~g~ 90 (158)
.|.|||+-| |+.++|+.... +.|-..=.++||..+| ..|++ -+++|+|-.- ..
T Consensus 37 rn~kPp~SYa~LI~~AI~sSp~---k~LTL~eIY~wI~~~fPYfr~~~d~~s~~gWqNSIRHNLSLnk~F~Kv~r---~~ 110 (150)
T 1e17_A 37 RNAWGNQSYAELISQAIESAPE---KRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHN---EA 110 (150)
T ss_dssp CCTTCSCCHHHHHHHHHHHSSS---CCEEHHHHHHHHHHHCGGGHHHHTSTTHHHHHHHHHHHHHSSTTEEEECC---TT
T ss_pred CCCCCCCCHHHHHHHHHHhCCC---CCccHHHHHHHHHHhCchhccCCCCccccchhhccceeeeeeeeeEecCC---CC
Confidence 477888764 56788888877 6666666788887765 34544 2678888644 23
Q ss_pred ccCcccccccc
Q psy13121 91 TGNGGEYEAQT 101 (158)
Q Consensus 91 ~G~gGEY~~q~ 101 (158)
.|.|..+.+..
T Consensus 111 ~GKG~~W~ldp 121 (150)
T 1e17_A 111 TGKSSWWMLNP 121 (150)
T ss_dssp TSSSCEEEECT
T ss_pred CCCcceEEECc
Confidence 34444444433
No 12
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A
Probab=36.38 E-value=26 Score=31.07 Aligned_cols=53 Identities=15% Similarity=0.075 Sum_probs=39.0
Q ss_pred cCCceeecccCCCCCCCCCCCCchHHHHHHHHHHhcCchH-HHHHHHHHHHHHHHH
Q psy13121 14 LLESTPTSLFNSTQQWDYPNAWAPLQAFIIQGLDYTQDKL-AKQVAYRLAEKWLFT 68 (158)
Q Consensus 14 ~~GGiptSl~~sg~QWD~PN~WaPlq~i~IeGL~~~G~~~-a~~lA~~lA~rWl~t 68 (158)
.+|+|.+|...+ .|||-++|.==-.+++.+|.+.|+.. ...-..+.|.+|++-
T Consensus 48 ~~GaiIASptts--npDYrY~W~RDaa~t~~aL~~~g~~~~~~~~l~~~a~~y~~~ 101 (492)
T 2fba_A 48 VPGTVIASPSTS--NPDYYYQWTRDSAITFLTVLSELEDNNFNTTLAKAVEYYINT 101 (492)
T ss_dssp CTTCBCSCSCBS--SSBCCSEEHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCeEEEeCCCC--CCCCeEEccchHHHHHHHHHHhCcccccccchHHHHHHHHHH
Confidence 479998887653 79999999999999999999998710 001235567777764
No 13
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=35.75 E-value=30 Score=31.53 Aligned_cols=79 Identities=10% Similarity=-0.069 Sum_probs=53.7
Q ss_pred CCCCCCCC---CCCchHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeeeeecccccCcccccccc
Q psy13121 25 STQQWDYP---NAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYDVELIGKTGNGGEYEAQT 101 (158)
Q Consensus 25 sg~QWD~P---N~WaPlq~i~IeGL~~~G~~~a~~lA~~lA~rWl~t~~~~~~~tg~m~EKYdv~~~g~~G~gGEY~~q~ 101 (158)
.|.+|+.+ |.|+-....++++|.+.|. + |.++++.+...=...|.|-|.|+....-..| +-.
T Consensus 586 ~G~~f~~~g~g~~W~~~t~~~a~al~~~G~-~--------A~~~~~~l~~~a~~~gllpE~~~~~~g~~~G------~a~ 650 (684)
T 1lf6_A 586 KTELYHGAGKGRLWPLLTGERGMYEIAAGK-D--------ATPYVKAMEKFANEGGIISEQVWEDTGLPTD------SAS 650 (684)
T ss_dssp TTBCCSSSSCCCBBHHHHHHHHHHHHHTTC-C--------CHHHHHHHHHHSCTTSCCCSCBCTTTCCBCS------SCS
T ss_pred CCCccccCCCCCchHHHHHHHHHHHHHhCh-H--------HHHHHHHHHHhcccCCccCeeecCCCCCCCC------CCc
Confidence 56778875 9999999999999999997 2 3444444443323468999999865221111 101
Q ss_pred cccccHHHHHHHHHHhc
Q psy13121 102 GFGWTNGFAFELLNRYG 118 (158)
Q Consensus 102 GFGWTNGV~L~ll~~yg 118 (158)
=..|+.+.++.++...-
T Consensus 651 PqaWSha~~i~~~~~l~ 667 (684)
T 1lf6_A 651 PLNWAHAEYVILFASNI 667 (684)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHh
Confidence 26899999998887654
No 14
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=28.70 E-value=16 Score=25.26 Aligned_cols=39 Identities=18% Similarity=0.441 Sum_probs=29.4
Q ss_pred CCCchHH--HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHh
Q psy13121 33 NAWAPLQ--AFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYE 74 (158)
Q Consensus 33 N~WaPlq--~i~IeGL~~~G~~~a~~lA~~lA~rWl~t~~~~~~ 74 (158)
|.|||+- .|+.++|+.... +.|-..=.+.||..++--|.
T Consensus 3 n~kp~~SY~~LI~~Ai~~sp~---~~ltL~eIY~~i~~~fpyy~ 43 (85)
T 3bpy_A 3 NAWGNQSYAELISQAIESAPE---KRLTLAQIYEWMVRTVPYFK 43 (85)
T ss_dssp BTTBSCCHHHHHHHHHHHSTT---SCBCHHHHHHHHHHHCGGGT
T ss_pred CCcCCCCHHHHHHHHHHhCCc---CCccHHHHHHHHHHhCcchh
Confidence 6788875 466788998888 66777678889988876544
No 15
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=28.19 E-value=59 Score=29.49 Aligned_cols=49 Identities=20% Similarity=0.207 Sum_probs=40.6
Q ss_pred cCCceeecccCCCCCCCCCCCCchHHHHHHHHHH----hcCchHHHHHHHHHHHHHHHH
Q psy13121 14 LLESTPTSLFNSTQQWDYPNAWAPLQAFIIQGLD----YTQDKLAKQVAYRLAEKWLFT 68 (158)
Q Consensus 14 ~~GGiptSl~~sg~QWD~PN~WaPlq~i~IeGL~----~~G~~~a~~lA~~lA~rWl~t 68 (158)
.+|+|.+|... .-|||-++|+==..+++.+|. +.|+ .++|++ +.+||..
T Consensus 32 ~tGaiIAsptt--s~pDYrY~W~RDaa~t~~aL~~~~~~~G~---~~~a~~-~~~~l~~ 84 (599)
T 2vn4_A 32 SAGAVIASPST--IDPDYYYMWTRDSALVFKNLIDRFTETYD---AGLQRR-IEQYITA 84 (599)
T ss_dssp CTTCBCSCSCC--SSSCCCSEEHHHHHHHHHHHHHHHHHSBC---HHHHHH-HHHHHHH
T ss_pred CCceEEEECCC--CCCCCeEEchhhHHHHHHHHHHHHHhCCC---HHHHHH-HHHHHhc
Confidence 46888887754 358999999999999999999 9999 777766 6888875
No 16
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A*
Probab=24.57 E-value=52 Score=29.13 Aligned_cols=67 Identities=16% Similarity=0.180 Sum_probs=49.3
Q ss_pred cCCceeecccCCCCCCCCCCCCchHHHHHHHHHH---hcCchHHHHHHHHHHHHHHHHHHHH---HhhcCcee------e
Q psy13121 14 LLESTPTSLFNSTQQWDYPNAWAPLQAFIIQGLD---YTQDKLAKQVAYRLAEKWLFTNYMG---YETSKAMF------E 81 (158)
Q Consensus 14 ~~GGiptSl~~sg~QWD~PN~WaPlq~i~IeGL~---~~G~~~a~~lA~~lA~rWl~t~~~~---~~~tg~m~------E 81 (158)
.+|+|.+|... .-|||-++|.==-.+++.+|. +.|+ .++|+ ...+||...... -...|.+. -
T Consensus 33 ~tGaiIASptt--snpDYrY~W~RDaa~t~~aL~~~~~~G~---~~~a~-~~~~~l~~~~~lQ~~~~~~G~l~~~glgE~ 106 (472)
T 1gai_A 33 DSGIVVASPST--DNPDYFYTWTRDSGLVIKTLVDLFRNGD---TDLLS-TIEHYISSQAIIQGVSNPSGDLSSGGLGEP 106 (472)
T ss_dssp CTTCBCSCSCB--SSSBCCSEEHHHHHHHHHHHHHHHHTTC---GGGHH-HHHHHHHHHHHHHHCCBTTBCTTTTGGGCC
T ss_pred CCceEEeeCCC--CCCCCeEEchhhHHHHHHHHHHHHhcCC---HHHHH-HHHHHHHHHHHhhcccCCCCccccCCCCCc
Confidence 47888887765 379999999999999999998 8998 55553 456777765321 12346777 7
Q ss_pred eeeee
Q psy13121 82 KYDVE 86 (158)
Q Consensus 82 KYdv~ 86 (158)
||++.
T Consensus 107 ~y~vd 111 (472)
T 1gai_A 107 KFNVD 111 (472)
T ss_dssp EECTT
T ss_pred eEccC
Confidence 89885
No 17
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=24.16 E-value=1.2e+02 Score=21.10 Aligned_cols=43 Identities=12% Similarity=0.155 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHHH----------HHHHHHHHhhcCce
Q psy13121 37 PLQAFIIQGLDYTQDKLAKQVAYRLAEKW----------LFTNYMGYETSKAM 79 (158)
Q Consensus 37 Plq~i~IeGL~~~G~~~a~~lA~~lA~rW----------l~t~~~~~~~tg~m 79 (158)
+-..+++.||-+.=--+..+.|+++..+| |+..++-+...|++
T Consensus 36 ~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~~~g~~ 88 (89)
T 1bh9_B 36 QNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLKSKGQI 88 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHcCCC
Confidence 45566678887776667789999999999 77777777777654
No 18
>3b77_A Uncharacterized protein; pleckstrin-homology domain, structural genomics, joint cente structural genomics, JCSG; 2.42A {Exiguobacterium sibiricum} SCOP: b.55.1.13
Probab=23.17 E-value=45 Score=26.78 Aligned_cols=26 Identities=23% Similarity=0.538 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHhhc--Cceeeee
Q psy13121 58 AYRLAEKWLFTNYMGYETS--KAMFEKY 83 (158)
Q Consensus 58 A~~lA~rWl~t~~~~~~~t--g~m~EKY 83 (158)
..+.|.+|+...+..|... |.+||||
T Consensus 163 ~~~~~~~wl~~~~~~~~~~df~~vfe~y 190 (193)
T 3b77_A 163 LSQESFDWLQGHYYKWNQKDFGSFYEKY 190 (193)
T ss_dssp HHHHHHHHHHHHHHHHSCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 3456899999999999764 8999998
No 19
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=21.09 E-value=1.1e+02 Score=27.74 Aligned_cols=64 Identities=13% Similarity=0.030 Sum_probs=44.8
Q ss_pred CCceeecccC------C-CCCCCCCCCCchHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhcCceeeeeee
Q psy13121 15 LESTPTSLFN------S-TQQWDYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYDV 85 (158)
Q Consensus 15 ~GGiptSl~~------s-g~QWD~PN~WaPlq~i~IeGL~~~G~~~a~~lA~~lA~rWl~t~~~~~~~tg~m~EKYdv 85 (158)
.|+|.+|... . ..-|||..+|.==+.+.+.+|...|+ .++|++. .+||.... ..+|.+.-||.+
T Consensus 314 ~G~iiAs~t~~~~e~~~~~~~~dY~~~W~RD~~~~~~al~~~G~---~~~a~~~-l~~l~~~q---~~~G~~~~~~~~ 384 (684)
T 1lf6_A 314 KGAYIASLSIPWGDGQRDDNTGGYHLVWSRDLYHVANAFIAAGD---VDSANRS-LDYLAKVV---KDNGMIPQNTWI 384 (684)
T ss_dssp TTCBCSCSSCTTGGGSBSBSCCGGGSBCHHHHHHHHHHHHHHTC---HHHHHHH-HHHHHHHH---HHHSSCCSCBCT
T ss_pred CccEEeecCCCCccccCCCCCCCCEEEeccHHHHHHHHHHHcCC---HHHHHHH-HHHHHhhc---CCCCCcccceeC
Confidence 6888776532 1 34599999999999999999999998 6666553 34554432 246776667763
No 20
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=20.60 E-value=37 Score=28.78 Aligned_cols=43 Identities=16% Similarity=0.365 Sum_probs=27.7
Q ss_pred cCceeeeeeeeecccccCcccccc--------cccccccHHH--HHHHHHHhc
Q psy13121 76 SKAMFEKYDVELIGKTGNGGEYEA--------QTGFGWTNGF--AFELLNRYG 118 (158)
Q Consensus 76 tg~m~EKYdv~~~g~~G~gGEY~~--------q~GFGWTNGV--~L~ll~~yg 118 (158)
||.+||-|.-......++||.|.. ..+-|++-|+ ++.+|..-+
T Consensus 315 TG~vFe~~~~~~g~~i~~GGRYD~L~~~fG~~~pAvGFaiglerL~~~l~~~~ 367 (373)
T 3rac_A 315 TGLVFEMFAPGVGAPIAQGGRYDELLAQFGAGAPAVGFAFEVERVMAVLEAQE 367 (373)
T ss_dssp CSEEEEEECTTCSSCSEEEEECTTTTGGGTCCCCCEEEEEEHHHHHHHHHHHH
T ss_pred CCeEEEEEECCCCCeEeecccccHHHHhhCCCCCeEEEEEEHHHHHHHHHhcc
Confidence 699999996554445678899953 3445555554 556665544
Done!