RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13121
(158 letters)
>gnl|CDD|215307 PLN02567, PLN02567, alpha,alpha-trehalase.
Length = 554
Score = 138 bits (349), Expect = 5e-39
Identities = 51/99 (51%), Positives = 66/99 (66%)
Query: 20 TSLFNSTQQWDYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAM 79
TSL N+ QQWD+PNAWAPLQ I++GL + K K +A +A +WL +NY+ Y+ + AM
Sbjct: 447 TSLRNTGQQWDFPNAWAPLQHMIVEGLAASGSKEGKALAEDIARRWLRSNYVAYKKTGAM 506
Query: 80 FEKYDVELIGKTGNGGEYEAQTGFGWTNGFAFELLNRYG 118
EKYD G+ G GGEY QTGFGW+NG LL +G
Sbjct: 507 HEKYDARYCGEVGGGGEYIPQTGFGWSNGVVLSLLEEFG 545
>gnl|CDD|216362 pfam01204, Trehalase, Trehalase. Trehalase (EC:3.2.1.28) is known
to recycle trehalose to glucose. Trehalose is a
physiological hallmark of heat-shock response in yeast
and protects of proteins and membranes against a variety
of stresses. This family is found in conjunction with
pfam07492 in fungi.
Length = 509
Score = 133 bits (338), Expect = 1e-37
Identities = 56/105 (53%), Positives = 66/105 (62%), Gaps = 6/105 (5%)
Query: 16 ESTPTSLFNSTQQWDYPNAWAPLQAFIIQGLD-YTQDKLAKQVAYRLAEKWLFTNYMGYE 74
PTSL S QQWDYPN WAPLQ ++GL Y D+LA+ RLA +WLFTN +
Sbjct: 409 GGIPTSLLKSGQQWDYPNGWAPLQHLAVEGLRRYGYDELAE----RLAYRWLFTNTKAFV 464
Query: 75 TSKAMFEKYDVELIGKTGN-GGEYEAQTGFGWTNGFAFELLNRYG 118
+ M EKYDV G+ GN GGEY Q GFGWTNG +LL+ YG
Sbjct: 465 DTGKMVEKYDVTRGGEYGNGGGEYVVQEGFGWTNGVYLDLLDLYG 509
>gnl|CDD|237326 PRK13271, treA, trehalase; Provisional.
Length = 569
Score = 88.4 bits (219), Expect = 3e-21
Identities = 43/97 (44%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 20 TSLFNSTQQWDYPNAWAPLQAFIIQGL-DYTQDKLAKQVAYRLAEKWLFTNYMGYETSKA 78
T+ S QQWD PN WAPLQ +GL +Y Q ++A V +R T Y+ K
Sbjct: 442 TTSVKSGQQWDAPNGWAPLQWVATEGLQNYGQKEVAMDVTWRFLTNVQHT----YDREKK 497
Query: 79 MFEKYDVELIGKTGNGGEYEAQTGFGWTNGFAFELLN 115
+ EKYDV G G GGEY Q GFGWTNG ++L+
Sbjct: 498 LVEKYDVSSTGTGGGGGEYPLQDGFGWTNGVTLKMLD 534
>gnl|CDD|224541 COG1626, TreA, Neutral trehalase [Carbohydrate transport and
metabolism].
Length = 558
Score = 85.9 bits (213), Expect = 3e-20
Identities = 45/101 (44%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 19 PTSLFNSTQQWDYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKA 78
S S QQWDYPN WAPLQ QGL + +A +A +WL Y+
Sbjct: 456 SASTPRSGQQWDYPNGWAPLQWIATQGL---KRYGYDILADDIARRWLTNVEQFYDYEGK 512
Query: 79 MFEKYDV-ELIGKTGNGGEYEAQTGFGWTNGFAFELLNRYG 118
+ EKYDV G G GGEY Q GFGWTNG +LL+ YG
Sbjct: 513 LVEKYDVSRGTGPGGGGGEYPLQDGFGWTNGVVLKLLDLYG 553
>gnl|CDD|183934 PRK13270, treF, trehalase; Provisional.
Length = 549
Score = 84.9 bits (210), Expect = 6e-20
Identities = 41/101 (40%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 20 TSLFNSTQQWDYPNAWAPLQAFIIQGL-DYTQDKLAKQVAYRLAEKWLFTNYMGYETSKA 78
S + + +QWD PN WAPLQ IQG Y D L ++A WL T Y+
Sbjct: 451 ASEYETGEQWDKPNGWAPLQWMAIQGFKMYGDDLLGDEIARS----WLKTVNQFYQEHHK 506
Query: 79 MFEKYDVE-LIGKTGNGGEYEAQTGFGWTNGFAFELLNRYG 118
+ EKY + + + G GGEY Q GFGWTNG L+ YG
Sbjct: 507 LIEKYHIAGGVPREGGGGEYPLQDGFGWTNGVVRRLIGLYG 547
>gnl|CDD|183936 PRK13272, treA, trehalase; Provisional.
Length = 542
Score = 84.6 bits (209), Expect = 8e-20
Identities = 40/100 (40%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 20 TSLFNSTQQWDYPNAWAPLQAFIIQGLD-YTQDKLAKQVAYRLAEKWLFTNYMGYETSKA 78
T+ + QQWD PN WAPLQ + GL Y +D LA+ + E++L +
Sbjct: 442 TTALKTGQQWDEPNGWAPLQWVAVDGLRRYGEDALAR----TIGERFLAQVQALFAREHK 497
Query: 79 MFEKYDVELIGKTGNGGEYEAQTGFGWTNGFAFELLNRYG 118
+ EKY ++ G GGEY Q GFGWTNG LLN Y
Sbjct: 498 LVEKYGLDGNAAGGGGGEYALQDGFGWTNGVTLMLLNLYP 537
>gnl|CDD|219482 pfam07598, DUF1561, Protein of unknown function (DUF1561). A
family of paralogous proteins in Leptospira interrogans.
Length = 630
Score = 34.6 bits (80), Expect = 0.015
Identities = 45/156 (28%), Positives = 61/156 (39%), Gaps = 34/156 (21%)
Query: 17 STPTSLFNSTQQWDYPNAWA-----PLQAFIIQG-LDYTQDKLAKQVAYRLAEKWLFTNY 70
+ P S+ ST WDY P Q +II+ YT D +R+ + N+
Sbjct: 95 TAPESVTKSTANWDYVLLRPCVINDPNQRWIIKDNAFYTADG-----RFRVKD----YNW 145
Query: 71 MGYETSKAMFEKYDVELIG------KT-GNGGEYEAQTGFGW----TNGFAFELLNRYGK 119
Y SK + YD L KT G +T W T GF+ + G
Sbjct: 146 YAY-ISKNSGDYYDHTLDSSMNDWIKTVATPGNISIKTFIAWDFVSTYGFSRYYIRNDG- 203
Query: 120 TISFNNTQGSYYNKIPGSGYLSGYYPSFMSGRPSFM 155
S NT YYN P +G+++ Y PS SG M
Sbjct: 204 --SSKNTTPLYYN--PENGHIAQYDPS--SGSLYCM 233
>gnl|CDD|216429 pfam01314, AFOR_C, Aldehyde ferredoxin oxidoreductase, domains 2 &
3. Aldehyde ferredoxin oxidoreductase (AOR) catalyzes
the reversible oxidation of aldehydes to their
corresponding carboxylic acids with their accompanying
reduction of the redox protein ferredoxin. This family
is composed of two structural domains that bind the
tungsten cofactor via DXXGL(C/D) motifs. In addition to
maintaining specific binding interactions with the
cofactor, another role for domains 2 and 3 may be to
regulate substrate access to AOR.
Length = 382
Score = 31.4 bits (72), Expect = 0.16
Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 9/49 (18%)
Query: 89 GKTGNGGEYEAQTGFGWTNG--------FAFELLNRYG-KTISFNNTQG 128
G G G EYE G G A L N YG TIS NT
Sbjct: 87 GGEGEGPEYETLAALGSNLGIDDLEAVLKANRLCNDYGLDTISTGNTIA 135
>gnl|CDD|185112 PRK15190, PRK15190, fimbrial protein BcfE; Provisional.
Length = 181
Score = 29.7 bits (66), Expect = 0.45
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 101 TGFGWTN----GFAFELLNRYGKTISFNNTQGSYYNKIPGSGYLSGYYPSFMSGRPSFMS 156
TG G N G E+LN TIS NN Y G LS +Y + S RP+ S
Sbjct: 109 TGMGSGNMLASGVGVEILNDDQDTISINNADSVVYPLKAGRNTLS-FYIRYKSTRPTVTS 167
Query: 157 A 157
Sbjct: 168 G 168
>gnl|CDD|216306 pfam01117, Aerolysin, Aerolysin toxin. This family represents the
pore forming lobe of aerolysin.
Length = 359
Score = 27.8 bits (62), Expect = 2.4
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 49 TQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYDVELIGKTGNGGEYEAQTGFGWTNG 108
T ++ + Y + W T+ G+ + K+ L+GKT E+EA + TNG
Sbjct: 115 TPQQIVVTLRYDQSTNWSKTDTYGFAEKVGIKNKFKWPLVGKTELSIEFEANQSWSSTNG 174
>gnl|CDD|200389 TIGR04138, Plancto_Ver_chp, Verruc_Plancto-restricted protein.
Members of this protein family are extremely
lineage-restricted, occurring exclusively in the
Planctomycetes and Chlamydiae/Verrucomicrobia group,
although not in Chlamydia itself. The function is
unknown; the lack of invariant residues other than a
single Phe suggests an ancient, conserved,
non-enzymatic role.
Length = 122
Score = 26.8 bits (60), Expect = 2.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 40 AFIIQGLDYTQDKLAKQ 56
AF+ + LD+TQ +L KQ
Sbjct: 18 AFVREALDFTQKRLGKQ 34
>gnl|CDD|222783 PHA00350, PHA00350, putative assembly protein.
Length = 399
Score = 26.7 bits (59), Expect = 5.8
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 23 FNSTQQWDYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAE 63
+ + P +W P A + +D Q K++ +++A
Sbjct: 66 LEGFESMNRPFSWRPRGALYV--IDEAQMIFPKRLGFKMAN 104
>gnl|CDD|227542 COG5217, BIM1, Microtubule-binding protein involved in cell cycle
control [Cell division and chromosome partitioning /
Cytoskeleton].
Length = 342
Score = 26.5 bits (58), Expect = 6.3
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 23 FNSTQQWDYPNAWAPLQA-FIIQGLDYTQD 51
F ++ +P LQ F G+D
Sbjct: 54 FPWIAEYKHPGNGKILQLLFSDYGIDKAVL 83
>gnl|CDD|198067 smart00999, Aerolysin, Aerolysin toxin. This family represents the
pore forming lobe of aerolysin.
Length = 368
Score = 26.4 bits (58), Expect = 7.4
Identities = 15/60 (25%), Positives = 25/60 (41%)
Query: 49 TQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYDVELIGKTGNGGEYEAQTGFGWTNG 108
T D + + Y W T+ + K++ LIG T E++A G+ +NG
Sbjct: 115 TPDTIVVTLRYDETTSWSKTDTYSFSEKVTTKNKFEWPLIGSTEISAEFDANQGWSESNG 174
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.133 0.406
Gapped
Lambda K H
0.267 0.0604 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,163,327
Number of extensions: 720786
Number of successful extensions: 452
Number of sequences better than 10.0: 1
Number of HSP's gapped: 444
Number of HSP's successfully gapped: 31
Length of query: 158
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 69
Effective length of database: 6,990,096
Effective search space: 482316624
Effective search space used: 482316624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.2 bits)