RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13121
(158 letters)
>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside
hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ;
1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A*
2jjb_A* 2wyn_A*
Length = 535
Score = 101 bits (251), Expect = 9e-26
Identities = 40/100 (40%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 19 PTSLFNSTQQWDYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKA 78
T+ S QQWD PN WAPLQ + Q+ K+VA ++ +L Y+ K
Sbjct: 407 NTTSVKSGQQWDAPNGWAPLQWVATE---GLQNYGQKEVAMDISWHFLTNVQHTYDREKK 463
Query: 79 MFEKYDVELIGKTGNGGEYEAQTGFGWTNGFAFELLNRYG 118
+ EKYDV G G GGEY Q GFGWTNG ++L+
Sbjct: 464 LVEKYDVSTTGTGGGGGEYPLQDGFGWTNGVTLKMLDLIC 503
>3c68_A Uncharacterized protein YGJK; GH63, processing alpha-glucosidase,
alpha/alpha barrel, hydrolase; HET: BMA; 1.50A
{Escherichia coli} PDB: 3c67_A* 2ds3_A* 3c69_A* 3d3i_A
Length = 761
Score = 76.8 bits (188), Expect = 2e-17
Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 14/104 (13%)
Query: 17 STPTSLFNSTQQWDYPNAWAPLQAFIIQGLD-YTQDKLAKQVAYRLAEKWLFTNYMGYET 75
+ F + W W F ++G++ Y A ++A F + G
Sbjct: 669 ALTNPAFGADIYWRGR-VWVDQFWFGLKGMERYGYRDDALKLADTF-----FRHAKGLTA 722
Query: 76 SKAMFEKYDVELIGKTGNGGEYEAQTGFGWTNGFAFELLNRYGK 119
+ E Y+ G + F W+ + L N + +
Sbjct: 723 DGPIQENYNPL-------TGAQQGAPNFSWSAAHLYMLYNDFFR 759
>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized
conserved protein, structural genomics, NPPSFA; 2.10A
{Thermus thermophilus}
Length = 420
Score = 55.4 bits (132), Expect = 8e-10
Identities = 17/100 (17%), Positives = 27/100 (27%), Gaps = 18/100 (18%)
Query: 16 ESTPTSLFNSTQQWDYPNAWAPLQAFIIQGL-DYTQDKLAKQVAYRLAEKWLFTNYMGYE 74
+ F + W P W + + +G DY LA ++
Sbjct: 337 VDPTSPFFEPGRYWRGPV-WINVNWMVAEGFRDYGFAALAARLKADALALM--------- 386
Query: 75 TSKAMFEKYDVELIGKTGNGGEYEAQTGFGWTNGFAFELL 114
+ E YD G+ GF W+ A
Sbjct: 387 EREGFREYYDPL-------TGQGRGGEGFSWSAALALFWT 419
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.064
Identities = 23/128 (17%), Positives = 34/128 (26%), Gaps = 48/128 (37%)
Query: 46 LDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYDVELIGKTGN--------G--- 94
L TQ Q A L KA FE + G G
Sbjct: 1726 LSATQ--FT-QPA-------LTL------MEKAAFE-----DLKSKGLIPADATFAGHSL 1764
Query: 95 GEYEAQTGFGWTNGFAFE----LLNRYGKTISFNNTQGSYYNKIPGSGYLSGYYPSFMSG 150
GEY A + + E ++ G T+ +P Y ++
Sbjct: 1765 GEYAALASLA--DVMSIESLVEVVFYRGMTM---------QVAVPRDELGRSNY-GMIAI 1812
Query: 151 RPSFMSAG 158
P ++A
Sbjct: 1813 NPGRVAAS 1820
>3d3z_A Actibind; RNAse, hydrolase; HET: NAG D3Z; 1.70A {Aspergillus
niger}
Length = 247
Score = 31.0 bits (69), Expect = 0.13
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 17 STPTSLFNSTQQWDYPNAWAPLQAFIIQGL 46
++P TQ WDY + P ++ I GL
Sbjct: 24 NSPGGSLLQTQFWDYDPSDGPSDSWTIHGL 53
>2xc7_A Phosphorylated adapter RNA export protein; RNA binding protein,
protein-RNA complex, nuclear export; NMR {Homo sapiens}
Length = 104
Score = 29.2 bits (65), Expect = 0.25
Identities = 10/56 (17%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 47 DYTQDKLAKQVAYRLAEK-----WLFTNYMGYETSKAMFEKYDVELIGKTGNGGEY 97
+ +Q+K+A ++++RL E +G + + + + + + NGG +
Sbjct: 5 EDSQEKVADEISFRLQEPKKDLIARVVRIIGNKKAIELLM--ETAEVEQ--NGGLF 56
>3g4n_A Aerolysin; toxin, cytolytic toxin, pore-forming toxin, membrane,
secret; 2.10A {Aeromonas hydrophila} PDB: 3g4o_A 1pre_A
1z52_A 3c0n_A 3c0m_A 3c0o_A*
Length = 470
Score = 30.2 bits (67), Expect = 0.25
Identities = 16/62 (25%), Positives = 21/62 (33%)
Query: 47 DYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYDVELIGKTGNGGEYEAQTGFGWT 106
D Q + Y A W TN G K+ L+G+T E A +
Sbjct: 209 DTPQSGYDVTLRYDTATNWSKTNTYGLSEKVTTKNKFKWPLVGETELSIEIAANQSWASQ 268
Query: 107 NG 108
NG
Sbjct: 269 NG 270
>1t8s_A AMP nucleosidase; alpha-beta-alpha sandwich, alpha-beta fold,
hydrolase; HET: FMP; 2.60A {Escherichia coli} SCOP:
c.56.2.1 PDB: 1t8r_A* 1t8w_A 1t8y_A 2guw_A
Length = 484
Score = 29.2 bits (65), Expect = 0.65
Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 32 PNAWAPLQAFIIQGLDYTQDKLAKQVAYRL---AEKWLFTNYMGYETSKAMFEKYDVELI 88
P ++PL F + +D++ +L + LFTNY Y F ++ I
Sbjct: 165 PTEFSPLSHFDARRVDFSLARLRHYTGTPVEHFQPFVLFTNYTRYVD---EFVRWGCSQI 221
Query: 89 GKTGNGGEYEAQTGFG 104
Y A + G
Sbjct: 222 --LDPDSPYIALSCAG 235
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 1.1
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 6/61 (9%)
Query: 55 KQVAYRLAEKWLFTNYMGYETSKAMFEKYDVELIGKTGNGGEYEAQTGFGWTNGFAFELL 114
+++ + E+ L NY K + E + Y Q + + F
Sbjct: 76 EEMVQKFVEEVLRINY------KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 115 N 115
N
Sbjct: 130 N 130
>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit;
oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus
denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14
b.61.4.1 PDB: 1jju_A*
Length = 489
Score = 27.8 bits (61), Expect = 1.9
Identities = 8/57 (14%), Positives = 15/57 (26%), Gaps = 7/57 (12%)
Query: 47 DYTQDKLAKQVAYRLAEKWLFTNYM-------GYETSKAMFEKYDVELIGKTGNGGE 96
Y + A + ++ G K E Y+V + +G
Sbjct: 159 TYPLGEAPDAYADDASGAYVLAGRQPGRGDYTGRLVLKKAGEDYEVTMTLDFADGSR 215
>1iyb_A Ribonuclease, ribonuclease M5; hydrolase; HET: 5GP; 1.50A
{Nicotiana glutinosa} SCOP: d.124.1.1 PDB: 1dix_A
Length = 208
Score = 27.2 bits (60), Expect = 2.1
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 6 NASGEADYLL--ESTPTSLFNSTQQWDYPNAWAPLQAFIIQGL 46
+ + D+ + P S ++ Q YP P F I GL
Sbjct: 3 EFAQDFDFFYFVQQWPGSYCDTKQSCCYPKTGKPASDFGIHGL 45
>3isg_A Penicillinase, beta-lactamase OXA-1; hydrolase, lysine
carboxylation, antibiotic resistance; HET: KCX DRW;
1.40A {Escherichia coli} PDB: 1m6k_A*
Length = 251
Score = 26.9 bits (59), Expect = 3.2
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 7/67 (10%)
Query: 75 TSKAMF---EKYDVELIGKTGNGGEYEAQTGFGWTNGFAFELLNRYGKTISF-NNTQGSY 130
T + M+ +L GKTG G GW GF + G F + G+
Sbjct: 172 TIENMYLQDLDNSTKLYGKTGAGFTANRTLQNGWFEGFIIS---KSGHKYVFVSALTGNL 228
Query: 131 YNKIPGS 137
+ + S
Sbjct: 229 GSNLTSS 235
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD;
ATP-binding, hydrolase, nucleotide-binding, RNA binding
protein, structural genomics; 1.90A {Sulfolobus
tokodaii}
Length = 337
Score = 26.7 bits (60), Expect = 3.5
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 18/54 (33%)
Query: 71 MGYET-----SKA---MFEKYDVELIGKTGNGGEYEAQTGFGWTNGFAFELLNR 116
MG++ SK M + +V + A+TG G T +A +L
Sbjct: 12 MGFKNFTEVQSKTIPLMLQGKNV--VV--------RAKTGSGKTAAYAIPILEL 55
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine
dimers, UV damaged DNA, DNA repai flavoprotein; HET:
FAD; 1.71A {Oryza sativa japonica group}
Length = 506
Score = 26.6 bits (59), Expect = 4.1
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 22 LFNSTQQWDYPNAWAPLQAFIIQGLDYTQDKLAK 55
F + +A F+++GL A
Sbjct: 73 AFALFPRPFLLSARRRQLGFLLRGLRRLAADAAA 106
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding
loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori}
SCOP: c.37.1.20
Length = 376
Score = 26.1 bits (58), Expect = 6.1
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 16/67 (23%)
Query: 50 QDKLAKQ---VA----Y-RLAEKWLFTNYMGYETSKAMFEKYDVE-------LIGKTGNG 94
Q++ AK+ VA Y RL+ K +++ + +VE LIG TG+G
Sbjct: 26 QEQ-AKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSG 84
Query: 95 GEYEAQT 101
AQT
Sbjct: 85 KTLMAQT 91
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.406
Gapped
Lambda K H
0.267 0.0464 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,478,912
Number of extensions: 135855
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 26
Length of query: 158
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 72
Effective length of database: 4,300,587
Effective search space: 309642264
Effective search space used: 309642264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.8 bits)