RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13121
         (158 letters)



>d2jg0a1 a.102.1.9 (A:37-547) Periplasmic trehalase TreA
           {Escherichia coli [TaxId: 562]}
          Length = 511

 Score =  120 bits (302), Expect = 2e-33
 Identities = 41/100 (41%), Positives = 52/100 (52%), Gaps = 3/100 (3%)

Query: 19  PTSLFNSTQQWDYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKA 78
            T+   S QQWD PN WAPLQ    +GL     K   +VA  ++  +L      Y+  K 
Sbjct: 401 NTTSVKSGQQWDAPNGWAPLQWVATEGLQNYGQK---EVAMDISWHFLTNVQHTYDREKK 457

Query: 79  MFEKYDVELIGKTGNGGEYEAQTGFGWTNGFAFELLNRYG 118
           + EKYDV   G  G GGEY  Q GFGWTNG   ++L+   
Sbjct: 458 LVEKYDVSTTGTGGGGGEYPLQDGFGWTNGVTLKMLDLIC 497


>d3c0na2 f.8.1.1 (A:85-468) (Pro)aerolysin, pore-forming lobe
           {Aeromonas hydrophila [TaxId: 644]}
          Length = 384

 Score = 27.9 bits (62), Expect = 0.61
 Identities = 15/62 (24%), Positives = 20/62 (32%)

Query: 47  DYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYDVELIGKTGNGGEYEAQTGFGWT 106
           D  Q      +    A  W  TN  G         K+   L+G+T    E  A   +   
Sbjct: 125 DTPQSGYDVTLRGDTATNWSKTNTYGLSEKVTTKNKFKWPLVGETELSIEIAANQSWASQ 184

Query: 107 NG 108
           NG
Sbjct: 185 NG 186


>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase)
           {Cellvibrio cellulosa [TaxId: 155077]}
          Length = 324

 Score = 26.4 bits (58), Expect = 1.9
 Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 7/39 (17%)

Query: 82  KYDVELIGKTGNGGEYEAQTGFGWTNGFAFELLNRYGKT 120
            YD+  +         E +TG+ W   +   ++N   K 
Sbjct: 290 FYDITQM-------SLERRTGYSWGGNYGTSIINFAQKV 321


>d1svdm1 d.73.1.1 (M:3-110) Ribulose 1,5-bisphosphate
          carboxylase-oxygenase {Halothiobacillus neapolitanus
          [TaxId: 927]}
          Length = 108

 Score = 24.3 bits (53), Expect = 4.5
 Identities = 4/19 (21%), Positives = 10/19 (52%)

Query: 47 DYTQDKLAKQVAYRLAEKW 65
              +++  Q+ Y +A+ W
Sbjct: 19 PMNAERIRAQIKYAIAQGW 37


>d1gk8i_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate
          carboxylase-oxygenase {Chlamydomonas reinhardtii
          [TaxId: 3055]}
          Length = 126

 Score = 24.4 bits (53), Expect = 5.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 47 DYTQDKLAKQVAYRLAEKW 65
            T +++A QV Y +A  W
Sbjct: 20 PLTDEQIAAQVDYIVANGW 38


>d1rbli_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate
          carboxylase-oxygenase {Synechococcus sp., strain pcc
          6301 [TaxId: 1131]}
          Length = 109

 Score = 24.0 bits (52), Expect = 6.5
 Identities = 3/19 (15%), Positives = 10/19 (52%)

Query: 47 DYTQDKLAKQVAYRLAEKW 65
            +  ++A Q+ Y + + +
Sbjct: 19 PLSDRQIAAQIEYMIEQGF 37


>d2cx1a2 d.17.6.4 (A:1-90) Hypothetical protein APE0525, N-terminal
           domain {Archaeon Aeropyrum pernix [TaxId: 56636]}
          Length = 90

 Score = 23.4 bits (50), Expect = 9.1
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 73  YETSKAMFEKYDVELIGKTGNGGEYEAQTG------FGWTNGFAFELL 114
           Y T     EK D+ L+    + GEYE  T       F W++G  +  L
Sbjct: 32  YYTRIPFSEKADLRLVKARTDSGEYEIITVDGVPCLFEWSDGRIYPTL 79


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.133    0.406 

Gapped
Lambda     K      H
   0.267   0.0627    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 614,551
Number of extensions: 27477
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 16
Length of query: 158
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 80
Effective length of database: 1,336,656
Effective search space: 106932480
Effective search space used: 106932480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (22.9 bits)