BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13123
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 64/114 (56%)
Query: 12 TTTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLK 71
T Y+C ECGK F+++ +L AH H G Y CP CGK F QL H++ H + H G K
Sbjct: 73 TGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEK 132
Query: 72 PYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKG 125
PY C CGK+F R +L H H G K + C CGK FS + L H RTH G
Sbjct: 133 PYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 63/115 (54%)
Query: 12 TTTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLK 71
T Y+C ECGK F+ K L H H G YKCP CGK F Q +++ H + H G K
Sbjct: 45 TGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEK 104
Query: 72 PYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
PY C CGK+F + + L+ H H G K + C CGK FS + L H RTH GE
Sbjct: 105 PYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGE 159
Score = 99.4 bits (246), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 61/117 (52%)
Query: 10 LATTTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGG 69
L Y C ECGK F+R L H H G YKCP CGK F + H + H G
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG 74
Query: 70 LKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
KPY C CGK+F + ++L+ H H G K +AC CGK FS L+ H RTH GE
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGE 131
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 45/88 (51%)
Query: 12 TTTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLK 71
T Y C ECGK F++ L AH H G YKCP CGK F + ++ H + H G K
Sbjct: 101 TGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEK 160
Query: 72 PYVCTYCGKAFVRASDLKRHIDAHLGVK 99
PY C CGK+F R L H H G K
Sbjct: 161 PYKCPECGKSFSRRDALNVHQRTHTGKK 188
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 49/81 (60%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACE 104
YKCP CGK F Q +++ H + H G KPY C CGK+F ++SDL++H H G K + C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 105 TCGKLFSSKHGLKYHVRTHKG 125
CGK FS L H RTH+
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQN 85
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 46/84 (54%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVC 75
Y+C ECGK F++ +L H H G YKCP CGK F Q ++ H + H G KPY C
Sbjct: 4 PYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 76 TYCGKAFVRASDLKRHIDAHLGVK 99
CGK+F R+ L RH H K
Sbjct: 64 PECGKSFSRSDHLSRHQRTHQNKK 87
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 35/56 (62%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
KPY C CGK+F ++S+L++H H G K + C CGK FS L+ H RTH GE
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGE 58
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 30/60 (50%)
Query: 12 TTTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLK 71
T Y+C ECGK F++ L H H G YKCP CGK F + H+ H + H K
Sbjct: 28 TGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 48 PLCGKFFIQLCHMKDHIQAHGGLKPYVCTY--CGKAFVRASDLKRHIDAHLGVKKFACET 105
P C K + +L H++ H + H G KPY C + C + F R+ LKRH H GVK F C+T
Sbjct: 12 PGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKT 71
Query: 106 CGKLFSSKHGLKYHVRTHKGE 126
C + FS LK H RTH GE
Sbjct: 72 CQRKFSRSDHLKTHTRTHTGE 92
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 12 TTTSAYQCG--ECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGG 69
T YQC +C ++F+R L H H G ++C C + F + H+K H + H G
Sbjct: 32 TGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTG 91
Query: 70 LKPYVCTY--CGKAFVRASDLKRHIDAH 95
KP+ C + C K F R+ +L RH + H
Sbjct: 92 EKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 22 CGKQFTRKFSLNAHLHVHYGSSNYKCPL--CGKFFIQLCHMKDHIQAHGGLKPYVCTYCG 79
C K++ + L H H G Y+C C + F + +K H + H G+KP+ C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 80 KAFVRASDLKRHIDAHLGVKKFACE--TCGKLFSSKHGLKYHVRTH 123
+ F R+ LK H H G K F+C +C K F+ L H H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 68.9 bits (167), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 44/82 (53%)
Query: 44 NYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
++ C +CGK F + + H+ H +PY C YCGK F + SD+K+H H G K C
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 104 ETCGKLFSSKHGLKYHVRTHKG 125
+ CGK FS L H R H G
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 45/82 (54%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVC 75
++ C CGK F R +L+ HL +H + Y C CGK F Q MK H H G KP+ C
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 76 TYCGKAFVRASDLKRHIDAHLG 97
CGKAF ++S+L H H G
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 73 YVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ C CGK+F R+S L H+ H + + C+ CGK F K +K H H GE
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGE 55
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 10 LATTTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGG 69
+ + T Y C CGK+F +K + H +H G +KC +CGK F Q ++ H + H G
Sbjct: 23 IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 22 CGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKA 81
C ++F+R L H+ +H G ++C +C + F + H+ HI+ H G KP+ C CG+
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 82 FVRASDLKRHIDAHLGVK 99
F R+ + KRH HL K
Sbjct: 72 FARSDERKRHTKIHLRQK 89
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 45 YKCPL--CGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFA 102
Y CP+ C + F + + HI+ H G KP+ C C + F R+ L HI H G K FA
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 103 CETCGKLFSSKHGLKYHVRTH 123
C+ CG+ F+ K H + H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 71 KPYVCTY--CGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+PY C C + F R+++L RHI H G K F C C + FS L H+RTH GE
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 10 LATTTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAH 67
+ T +QC C + F+R L H+ H G + C +CG+ F + K H + H
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 22 CGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKA 81
C ++F+R L H+ +H G ++C +C + F + H+ HI+ H G KP+ C CG+
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 82 FVRASDLKRHIDAHLGVK 99
F R+ + KRH HL K
Sbjct: 72 FARSDERKRHTKIHLRQK 89
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 45 YKCPL--CGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFA 102
Y CP+ C + F + + HI+ H G KP+ C C + F R+ L HI H G K FA
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 103 CETCGKLFSSKHGLKYHVRTH 123
C+ CG+ F+ K H + H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 71 KPYVCTY--CGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+PY C C + F R++DL RHI H G K F C C + FS L H+RTH GE
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 10 LATTTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAH 67
+ T +QC C + F+R L H+ H G + C +CG+ F + K H + H
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 22 CGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKA 81
C ++F+R L H+ +H G ++C +C + F + H+ HI+ H G KP+ C CG+
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 82 FVRASDLKRHIDAHLGVK 99
F R+ + KRH HL K
Sbjct: 72 FARSDERKRHTKIHLRQK 89
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 45 YKCPL--CGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFA 102
Y CP+ C + F + + HI+ H G KP+ C C + F R+ L HI H G K FA
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 103 CETCGKLFSSKHGLKYHVRTH 123
C+ CG+ F+ K H + H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 71 KPYVCTY--CGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+PY C C + F R+ +L RHI H G K F C C + FS L H+RTH GE
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 10 LATTTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAH 67
+ T +QC C + F+R L H+ H G + C +CG+ F + K H + H
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
Length = 87
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 22 CGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKA 81
C ++F+R L H+ +H G ++C +C + F + H+ HI+ H G KP+ C CG+
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 82 FVRASDLKRHIDAHL 96
F R+ + KRH HL
Sbjct: 71 FARSDERKRHTKIHL 85
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 45 YKCPL--CGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFA 102
Y CP+ C + F + + HI+ H G KP+ C C + F R+ L HI H G K FA
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 103 CETCGKLFSSKHGLKYHVRTH 123
C+ CG+ F+ K H + H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 71 KPYVCTY--CGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+PY C C + F R+ +L RHI H G K F C C + FS L H+RTH GE
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 59
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 10 LATTTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAH 67
+ T +QC C + F+R L H+ H G + C +CG+ F + K H + H
Sbjct: 27 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 22 CGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKA 81
C ++F+R L H+ +H G ++C +C + F + H+ HI+ H G KP+ C CG+
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 82 FVRASDLKRHIDAHL 96
F R+ + KRH HL
Sbjct: 72 FARSDERKRHTKIHL 86
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 45 YKCPL--CGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFA 102
Y CP+ C + F + + HI+ H G KP+ C C + F R+ L HI H G K FA
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 103 CETCGKLFSSKHGLKYHVRTH 123
C+ CG+ F+ K H + H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 71 KPYVCTY--CGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+PY C C + F R+ +L RHI H G K F C C + FS L H+RTH GE
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 10 LATTTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAH 67
+ T +QC C + F+R L H+ H G + C +CG+ F + K H + H
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%)
Query: 22 CGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKA 81
C ++F++ SL H+ +H G ++C +C + F + H+ HI+ H G KP+ C CG+
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 82 FVRASDLKRHIDAHLGVK 99
F R+ + KRH HL K
Sbjct: 72 FARSDERKRHTKIHLRQK 89
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 45 YKCPL--CGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFA 102
Y CP+ C + F Q + HI+ H G KP+ C C + F R+ L HI H G K FA
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 103 CETCGKLFSSKHGLKYHVRTH 123
C+ CG+ F+ K H + H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 71 KPYVCTY--CGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+PY C C + F ++ L RHI H G K F C C + FS L H+RTH GE
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 10 LATTTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAH 67
+ T +QC C + F+R L H+ H G + C +CG+ F + K H + H
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 22 CGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKA 81
C ++F+ +L H+ +H G ++C +C + F + H+ HI+ H G KP+ C CG+
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 82 FVRASDLKRHIDAHLGVK 99
F R+ + KRH HL K
Sbjct: 72 FARSDERKRHTKIHLRQK 89
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 45 YKCPL--CGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFA 102
Y CP+ C + F ++ HI+ H G KP+ C C + F R+ L HI H G K FA
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 103 CETCGKLFSSKHGLKYHVRTH 123
C+ CG+ F+ K H + H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 71 KPYVCTY--CGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+PY C C + F +S+L RHI H G K F C C + FS L H+RTH GE
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 10 LATTTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAH 67
+ T +QC C + F+R L H+ H G + C +CG+ F + K H + H
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 22 CGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTY--CG 79
C K F ++ HLH H G + C CGK F++ +K H H G KP+ CT+ CG
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 80 KAFVRASDLKRHIDAHLGVKKFAC--ETCGKLFSSKHGLKYHVRTH 123
K F +L+ H+ H G + + C + C K F+ LK H+ TH
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 50 CGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC--ETCG 107
C K F M+ H+ HG + +VC CGKAFV +S LKRH H G K F C E CG
Sbjct: 13 CTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 108 KLFSSKHGLKYHVRTHKGE 126
K FS L+ HVR H G+
Sbjct: 72 KRFSLDFNLRTHVRIHTGD 90
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 19 CGECGKQFTRKFSLNAHLHVHYGSSNYKCPL--CGKFFIQLCHMKDHIQAHGGLKPYVCT 76
C ECGK F L H VH G ++C CGK F +++ H++ H G +PYVC
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP 96
Query: 77 Y--CGKAFVRASDLKRHIDAHLGVK 99
+ C K F ++++LK HI H K
Sbjct: 97 FDGCNKKFAQSTNLKSHILTHAKAK 121
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 45 YKCPL--CGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFA 102
Y CP+ C + F Q ++ HI+ H G KP+ C C + F + + L HI H G K FA
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 103 CETCGKLFSSKHGLKYHVRTH 123
C+ CG+ F++ H H + H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 22 CGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKA 81
C ++F++K +L+ H+ +H G ++C +C + F Q + HI+ H G KP+ C CG+
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 82 FVRASDLKRHIDAHLGVK 99
F RH HL K
Sbjct: 72 FATLHTRTRHTKIHLRQK 89
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 71 KPYVCTY--CGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+PY C C + F + ++L HI H G K F C C + FS + L H+RTH GE
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 10 LATTTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAH 67
+ T +QC C + F+++ SLNAH+ H G + C +CG+ F L H + H
Sbjct: 28 IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIH 85
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 45 YKCPL--CGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFA 102
Y CP+ C + F Q ++ HI+ H G KP+ C C + F + + L +HI H G K FA
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 103 CETCGKLFSSKHGLKYHVRTH 123
C+ CG+ F++ H H + H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 22 CGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKA 81
C ++F++K +L+ H+ +H G ++C +C + F Q + HI+ H G KP+ C CG+
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 82 FVRASDLKRHIDAHLGVK 99
F RH HL K
Sbjct: 72 FATLHTRDRHTKIHLRQK 89
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 71 KPYVCTY--CGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+PY C C + F + ++L HI H G K F C C + FS GL H+RTH GE
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 10 LATTTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKD 62
+ T +QC C + F++ LN H+ H G + C +CG+ F L H +D
Sbjct: 28 IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATL-HTRD 79
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 48 PLCGKFFIQLCHMKDHIQAHGGLKPYVCTY--CGKAFVRASDLKRHIDAHLGVKKFACET 105
P C K + + H+K H++ H G KPY CT+ C F R+ +L RH H G K F C
Sbjct: 21 PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGV 80
Query: 106 CGKLFSSKHGLKYHVRTHKG 125
C + FS L H++ H+
Sbjct: 81 CNRSFSRSDHLALHMKRHQN 100
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 22 CGKQFTRKFSLNAHLHVHYGSSNYKCPL--CGKFFIQLCHMKDHIQAHGGLKPYVCTYCG 79
C K +T+ L AHL H G YKC C F + + H + H G KP+ C C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 80 KAFVRASDLKRHIDAH 95
++F R+ L H+ H
Sbjct: 83 RSFSRSDHLALHMKRH 98
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 41 GSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGV-- 98
GSS C +CGK F + H+ H +H G KPY C CG F R + H+ +H G
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 63
Query: 99 KKFACETCGKLFSSKHGLKYHVR 121
K + C++CGK FS L H++
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIK 86
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 11 ATTTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGL 70
++ +S C CGK F + LN H H G Y CP+CG F + M H+++H G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 71 --KPYVCTYCGKAFVRASDLKRHI 92
KPY+C CGK F R L HI
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHI 85
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 97 GVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G ACE CGK+F + L H +H GE
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGE 33
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
Y C +CGK FT K + H+ +H G Y C +CGK F H+ H++ H G+KPY C
Sbjct: 11 YPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 77 YCGKAFVRASDLKRHIDA 94
C K F+ RH+ +
Sbjct: 70 ICAKRFMWRDSFHRHVTS 87
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 41 GSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKK 100
G Y C CGK F H+ H GL+PY C CGK F L H+ H G+K
Sbjct: 7 GDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 101 FACETCGKLFSSKHGLKYHVRT 122
+ C C K F + HV +
Sbjct: 66 YECNICAKRFMWRDSFHRHVTS 87
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 69 GLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKG 125
G K Y C CGK+F S RH+ HLG++ + C CGK F KH L H++ H G
Sbjct: 7 GDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG 62
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 50 CGKFFIQLCHMKDHIQAHGGLKPYVCTY--CGKAFVRASDLKRHIDAHLGVKKFACETCG 107
CGK + + H+K H++ H G KPY C + CG F R+ +L RH H G + F C+ C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 108 KLFSSKHGLKYHVRTH 123
+ FS L H++ H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 22 CGKQFTRKFSLNAHLHVHYGSSNYKCPL--CGKFFIQLCHMKDHIQAHGGLKPYVCTYCG 79
CGK +T+ L AHL H G Y C CG F + + H + H G +P+ C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 80 KAFVRASDLKRHIDAHL 96
+AF R+ L H+ H
Sbjct: 73 RAFSRSDHLALHMKRHF 89
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 106 CGKLFSSKHGLKYHVRTHKGE 126
CGK ++ LK H+RTH GE
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGE 33
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 50 CGKFFIQLCHMKDHIQAHGGLKPYVCTY--CGKAFVRASDLKRHIDAHLGVKKFACETCG 107
CGK + + H+K H++ H G KPY C + CG F R+ +L RH H G + F C+ C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 108 KLFSSKHGLKYHVRTH 123
+ FS L H++ H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 22 CGKQFTRKFSLNAHLHVHYGSSNYKCPL--CGKFFIQLCHMKDHIQAHGGLKPYVCTYCG 79
CGK +T+ L AHL H G Y C CG F + + H + H G +P+ C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 80 KAFVRASDLKRHIDAHL 96
+AF R+ L H+ H
Sbjct: 74 RAFSRSDHLALHMKRHF 90
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 106 CGKLFSSKHGLKYHVRTHKGE 126
CGK ++ LK H+RTH GE
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGE 34
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 11 ATTTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQ---AH 67
++ +S +C C K+F K+ L H H G ++CP CGK + + ++ +H +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 68 GGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYH-VRTHKG 125
+ + C+ C + F R +L+ H+ +H G + C +C + F K L+ H ++ H G
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 41 GSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHID---AHLG 97
GSS +CP C K F+ ++K H + H G KP+ C CGK + R +L H +
Sbjct: 4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS 63
Query: 98 VKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ F C C + F + L+ H+ +H GE
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHMVSHTGE 92
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 3 EIRPRDPLATTTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKD 62
E R+ + + + C C + F R+ L H+ H G YKC C + F+Q ++
Sbjct: 53 EHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQS 112
Query: 63 H-IQAHGG 69
H I+ H G
Sbjct: 113 HMIKLHSG 120
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 18 QCGECGKQFTRKFSLNAHLHVHYGSSNYKCPL--CGKFFIQLCHMKDHIQAHGGLKPYVC 75
+C GK F K+ L H+ VH G + CP CGK F + ++K H + H G KP+ C
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 76 TY--CGKAFVRASDLKRHIDAHLGVK 99
+ C + F +SD K+H+ H K
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 46 KCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTY--CGKAFVRASDLKRHIDAHLGVKKFAC 103
+CP GK F + +HI+ H G KP+ C + CGK F R+ +LK H H G K F C
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 104 --ETCGKLFSSKHGLKYHVRTHKGE 126
E C + F++ K H+ H +
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVHTSD 148
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%)
Query: 42 SSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKF 101
S +KC +CGK F + +K H++ H G+KPY C C A +S L +H+ H + F
Sbjct: 6 SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPF 65
Query: 102 ACETCGKLFSSKHGLKYHVRTHKGE 126
C+ C + L H+R+H G+
Sbjct: 66 KCQICPYASRNSSQLTVHLRSHTGD 90
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%)
Query: 13 TTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
++ ++C CGK F+RK L H+ H G YKC C + H++ H +P
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP 64
Query: 73 YVCTYCGKAFVRASDLKRHIDAHLG 97
+ C C A +S L H+ +H G
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTG 89
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%)
Query: 66 AHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKG 125
+ G P+ C CGK F R LK H+ H GVK + C+TC + L H+R H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 126 E 126
E
Sbjct: 62 E 62
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 24/58 (41%)
Query: 12 TTTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGG 69
T Y+C C SLN HL +H +KC +C + H+++H G
Sbjct: 32 TGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTG 89
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 7/106 (6%)
Query: 24 KQFTRKFSLNAHLHVHYGSSNYKCPL--CGKFFIQLCHMKDHIQAHGGLKPYVCTY--CG 79
+ F ++ L H+ H G +KC C K + +L ++K H+++H G KPY+C + C
Sbjct: 47 RPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCS 106
Query: 80 KAFVRASDLKRHID-AHLGVKKFACET--CGKLFSSKHGLKYHVRT 122
KAF ASD +H + H K + C+ C K ++ L+ HV+T
Sbjct: 107 KAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 56 QLCHMKDHIQAHGGLKPYVCTYCG-----KAFVRASDLKRHIDAHLGVKKFAC--ETCGK 108
QL H + HG K +VC + G + F L H+ H G K C E C K
Sbjct: 18 QLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRK 77
Query: 109 LFSSKHGLKYHVRTHKGE 126
+S LK H+R+H GE
Sbjct: 78 SYSRLENLKTHLRSHTGE 95
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%)
Query: 11 ATTTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGL 70
+ T + C CG+ FT+ ++L H H Y C +C K F + H++DH H
Sbjct: 12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKE 71
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGV 98
KP+ C CGK F ++ L H H+
Sbjct: 72 KPFKCQECGKGFCQSRTLAVHKTLHMQT 99
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 36/80 (45%)
Query: 44 NYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
+ C CG+ F + ++ H + H +PY C C KAF R L+ H H K F C
Sbjct: 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC 76
Query: 104 ETCGKLFSSKHGLKYHVRTH 123
+ CGK F L H H
Sbjct: 77 QECGKGFCQSRTLAVHKTLH 96
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
K ++C +CG+ F ++ +L H H + + C+ C K F + L+ H H E
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKE 71
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 30/53 (56%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTH 123
KPY C CGKAF R+S L +H H G K + C CGK FS GL H R H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 27/51 (52%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAH 67
Y C ECGK F+R L H VH G YKC CGK F Q + +H + H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 26/51 (50%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAH 95
Y C CGK F + + H + H G KPY C CGKAF + S L H H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K + C CGK FS L H R H GE
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGE 40
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 12 TTTSAYQCGECGKQFTRKFSLNAHLHVH 39
T Y+C ECGK F++ L H +H
Sbjct: 38 TGEKPYKCLECGKAFSQNSGLINHQRIH 65
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 30/56 (53%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
Y+C ECGK F+ L+ H H G YKC CGK FIQ H+ H + H G P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 28/53 (52%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLG 97
YKC CGK F + H + H G KPY C CGKAF++ S L H H G
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%)
Query: 73 YVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKG 125
Y C CGK+F +SDL +H H G K + C+ CGK F + L H R H G
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
+++ C+ CGK FS L H RTH GE
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGE 44
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 12 TTTSAYQCGECGKQFTRKFSLNAHLHVHYGS 42
T Y+C ECGK F ++ L H VH GS
Sbjct: 42 TGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+P+ C +CGK + AS L RH AHLG + +C CGK F + + H++ H+ +
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 47 CPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAH 95
C CGK + + H +AH G +P C CGK F S++ RH+ H
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 23/55 (41%)
Query: 13 TTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAH 67
+ + C CGK + L+ H H G CP CGK F + H++ H
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 70 LKPYVCTY--CGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTH 123
++PY C C + F R+ +L RHI H G K F C C + FS L H+RTH
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 45 YKCPL--CGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAH 95
Y CP+ C + F + + HI+ H G KP+ C C + F R+ L HI H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 16 AYQCG--ECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAH 67
Y C C ++F+R L H+ +H G ++C +C + F + H+ HI+ H
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 98 VKKFAC--ETCGKLFSSKHGLKYHVRTHKGE 126
++ +AC E+C + FS L H+R H G+
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQ 47
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%)
Query: 41 GSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKK 100
G Y C +C + ++ L ++ H H K Y C YC K F A +H H G ++
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 101 FACETCGKLFSSKHGLKYHVRT 122
+ C CGK F + + H+++
Sbjct: 79 YQCLACGKSFINYQFMSSHIKS 100
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 33/78 (42%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
Y C C + + SL H ++H Y C C K F + H H G + Y C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 77 YCGKAFVRASDLKRHIDA 94
CGK+F+ + HI +
Sbjct: 83 ACGKSFINYQFMSSHIKS 100
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 73 YVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
Y+C C +++V + L+RH + H KK+ C C K+F H H GE
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGE 76
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 41 GSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAH 95
GSS+ +C CGKFF ++ H++ H G KPY C +C A + + L+ H++ H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 14 TSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAH 67
+S+ +C CGK F + LN HL H G YKC C Q ++ H++ H
Sbjct: 2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 75 CTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTH 123
C+YCGK F L H+ H G K + CE C + K L+YH+ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 97 GVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G C CGK F S + L H+RTH GE
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGE 30
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHID 93
++C +C + F + H+ HI+ H G KP+ C CG+ F R+ + KRH D
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRD 52
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 70 LKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYH 119
+KP+ C C + F R+ L HI H G K FAC+ CG+ F+ K H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDH 63
+QC C + F+R L H+ H G + C +CG+ F + K H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 98 VKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+K F C C + FS L H+RTH GE
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGE 29
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 20 GECGKQFTRKFSLNAHLHVHYGSSNYKCPL--CGKFFIQLCHMKDHIQAHGGLKPYVCTY 77
+CG + + + L AHL H G + C C K F L H+ H H G K + C
Sbjct: 18 ADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDS 77
Query: 78 --CGKAFVRASDLKRHIDAHLGVK--KFAC--ETCGKLFSSKHGLKYHVRTH 123
C F +++K+H + +K + C E CGK F + LK H +H
Sbjct: 78 DGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH 129
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 12 TTTSAYQCGE--CGKQFTRKFSLNAHLHVHYGSSNYKCPL--CGKFFIQLCHMKDHIQAH 67
T + C E C K FT L H H G N+ C C F +MK H
Sbjct: 38 TGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRF 97
Query: 68 GGLK--PYVCTY--CGKAFVRASDLKRHIDAHLGVKKFAC--ETCGKLFSSKHGLKYHVR 121
+K YVC + CGKAF + + LK H +H + C E C K FS LK H +
Sbjct: 98 HNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK 157
Query: 122 THKG 125
H G
Sbjct: 158 VHAG 161
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 71 KPYVCTY--CGKAFVRASDLKRHIDAHLGVKKFAC--ETCGKLFSSKHGLKYHVRTHKGE 126
K Y+C++ CG A+ + L+ H+ H G K F C E C K F+S H L H TH GE
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 21 ECGKQFTRKFSLNAHLHVHYGSSNYKCPL--CGKFFIQLCHMKDHIQAHGGL---KPYVC 75
CGK F + L H H Y+CP C K F +K H + H G K C
Sbjct: 111 NCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSC 170
Query: 76 TYCGKAFV 83
++ GK +
Sbjct: 171 SFVGKTWT 178
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 26/56 (46%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
KPY C C +F +L H H G K + C CG F+ LK H R H GE
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
Y+C C F K +L +H VH G Y+C +CG F + ++K H + H G KP
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
YKC C F ++ H H G KPY C CG F R ++LK H H G K
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 12 TTTSAYQCGECGKQFTRKFSLNAHLHVHYGS 42
T Y+C CG QF R +L H +H G
Sbjct: 41 TGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domains From Human Krueppel-Like Factor 10
Length = 72
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 48 PLCGKFFIQLCHMKDHIQAHGGLKPYVCTY--CGKAFVRASDLKRHIDAH 95
P CGK + + H+K H + H G KP+ C++ C + F R+ +L RH H
Sbjct: 23 PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 70 LKPYVCTY--CGKAFVRASDLKRHIDAHLGVKKFAC--ETCGKLFSSKHGLKYHVRTH 123
++ ++C++ CGK + ++S LK H H G K F+C + C + F+ L H RTH
Sbjct: 15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Query: 83 VRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ +S ++ HI +H G CGK + LK H RTH GE
Sbjct: 10 IDSSRIRSHICSHPG--------CGKTYFKSSHLKAHTRTHTGE 45
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 71 KPYVCTY--CGKAFVRASDLKRHIDAHLGVKKFAC--ETCGKLFSSKHGLKYHVRTHKGE 126
K Y+C++ CG A+ + L+ H+ H G K F C E C K F+S H L H TH GE
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 20 GECGKQFTRKFSLNAHLHVHYGSSNYKCPL--CGKFFIQLCHMKDHIQAHGGLKPYVCTY 77
+CG + + + L AHL H G + C C K F L H+ H H G K + C
Sbjct: 9 ADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDS 68
Query: 78 --CGKAFVRASDLKRHIDAHLGVK 99
C F +++K+H + +K
Sbjct: 69 DGCDLRFTTKANMKKHFNRFHNIK 92
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 50 CGKFFIQLCHMKDHIQAHGGLKPYVCTY--CGKAFVRASDLKRHIDAHLGVKKFACET-- 105
CG + + ++ H+ H G KP+ C C K F L RH H G K F C++
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 106 CGKLFSSKHGLKYHVR 121
C F++K +K H
Sbjct: 71 CDLRFTTKANMKKHFN 86
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 44 NYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRH 91
++ C +C + F + H+K H ++H KPY C C +AF R L RH
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 73 YVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHV-RTHKGE 126
+VC C +AF R LKRH +H K + C C + F+ + L H + H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQ 65
++ C C + F R+ L H H Y C LC + F + + H Q
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ 51
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 65 QAHGGLKPYVCTYCGKAFVRASDL----KRHIDAHLGVKKFACETCGKLFSSKHGLKYHV 120
+ H G KPY C++C K F + L KR+ D + F C CGK F+ ++ + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 38 VHYGSSNYKCPLCGKFFIQL----CHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHID 93
H G Y C C K F Q H K + + +VC+ CGK F R + + RH D
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68
Query: 94 AHLGVKKFACETCG 107
G E G
Sbjct: 69 NCAGPDGVEGENSG 82
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 22 CGKQFTRKFSLNAH---LHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYC 78
CG+ F+ + LN H H+H S + P CGK F H+K+H++ H + Y+C +
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Query: 79 GKA 81
G +
Sbjct: 75 GPS 77
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 41 GSSNYKC--PLCGKFFIQLCHMKDHIQ-AHGGLKPYVCTY--CGKAFVRASDLKRHIDAH 95
GSS C P CG+ F ++ H + H K + C CGK+F LK H+ H
Sbjct: 4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
Query: 96 LGVKKFACETCG 107
+ + CE G
Sbjct: 64 SDTRDYICEFSG 75
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 78 CGKAFVRASDLKRHID-AHLGVKKFACE--TCGKLFSSKHGLKYHVRTH 123
CG+ F L H H+ K F+C CGK F+ K LK H++ H
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKK 100
Y C CG + +K HI+ H ++PY CTYC +F +L +H+ + KK
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 73 YVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRT 122
Y+C CG + S LK+HI H V+ + C C F +K L H+++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPYVC YCGKAF +++L RH H G K
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEK 39
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K + C+ CGK F L H R H GE
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGE 38
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 484
Length = 42
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 18/29 (62%)
Query: 69 GLKPYVCTYCGKAFVRASDLKRHIDAHLG 97
G KPYVCT CGKAF+R S H H G
Sbjct: 7 GEKPYVCTECGKAFIRKSHFITHERIHTG 35
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSN 44
Y C ECGK F RK H +H G S
Sbjct: 11 YVCTECGKAFIRKSHFITHERIHTGESG 38
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 97 GVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G K + C CGK F K H R H GE
Sbjct: 7 GEKPYVCTECGKAFIRKSHFITHERIHTGE 36
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY+C CGK+F++ S L RH H G K
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEK 39
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYG 41
Y C ECGK F +K LN H +H G
Sbjct: 12 PYICNECGKSFIQKSHLNRHRRIHTG 37
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
Y C CGK FIQ H+ H + H G KP
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K + C CGK F K L H R H GE
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGE 38
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 97 GVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
GVK + C CGK F SK L H+RTH GE
Sbjct: 7 GVKPYGCSECGKAFRSKSYLIIHMRTHTGE 36
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 69 GLKPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
G+KPY C+ CGKAF S L H+ H G K
Sbjct: 7 GVKPYGCSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYG 41
Y C ECGK F K L H+ H G
Sbjct: 11 YGCSECGKAFRSKSYLIIHMRTHTG 35
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
+PY+CT CGKAF S+L +H H G K
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ + C CGK F+ + L H + H GE
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGE 38
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
Y C +CGK F ++ H + H G KP
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C CGKAF + S L RH H G K
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYG 41
YQC ECGK F++ L H VH G
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTG 37
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K + C CGK FS L H R H GE
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGE 38
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
Y+C CGK F Q + H + H G KP
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 2)
Length = 31
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 71 KPYVCT--YCGKAFVRASDLKRHIDAHLGVK 99
+P++CT YCGK F R+ +L+RH H G K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C CGKAF + S L RH H G K
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYG 41
Y+C ECGK F++ L H +H G
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTG 37
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K + C CGK FS L H R H GE
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGE 38
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
YKC CGK F Q + H + H G KP
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K + C CGK FSSK L H+RTH GE
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGE 38
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C+ CGKAF S L H+ H G K
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYG 41
Y C ECGK F+ K L H+ H G
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSG 37
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
Y C CGK F ++ H++ H G KP
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 18/31 (58%)
Query: 69 GLKPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
G KPYVC+ CGKAF S L H H GV
Sbjct: 7 GEKPYVCSDCGKAFTFKSQLIVHQGIHTGVS 37
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSN 44
Y C +CGK FT K L H +H G S
Sbjct: 11 YVCSDCGKAFTFKSQLIVHQGIHTGVSG 38
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 17/31 (54%)
Query: 69 GLKPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
G KPY C CGKAF S L H H GVK
Sbjct: 7 GEKPYSCNECGKAFTFKSQLIVHKGVHTGVK 37
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 14/25 (56%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYG 41
Y C ECGK FT K L H VH G
Sbjct: 11 YSCNECGKAFTFKSQLIVHKGVHTG 35
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLG 97
KPY C+ CGKAF+R S L H H G
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSG 37
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 11 ATTTSAYQCGECGKQFTRKFSLNAHLHVHYGSS 43
T Y+C ECGK F R L H H G S
Sbjct: 7 GTREKPYECSECGKAFIRNSQLIVHQRTHSGES 39
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K + C CGK F L H RTH GE
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSGE 38
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 65 QAHGGLKPYVCTYCGKAFVRASDLKRHI-DAHL-GVKKFACETCGKLFSSKHGLKYHVR 121
+ H G KPY C C F ++ +K HI H V KF C C + + K L H+R
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 38 VHYGSSNYKCPLCGKFFIQLCHMKDHI-QAHG-GLKPYVCTYCGKAFVRASDLKRHI 92
H G Y+C +C F Q MK HI Q H + + C +C R SDL H+
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C CGKAF+ S L+ H H G K
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEK 39
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
Y C CGK FI +++H + H G KP
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K + CE CGK F L+ H R H GE
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGE 38
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYG 41
Y C ECGK F L H +H G
Sbjct: 12 PYNCEECGKAFIHDSQLQEHQRIHTG 37
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 69 GLKPYVCTYCGKAFVRASDLKRHIDAHLG 97
G KPYVC CGKAF ++S L H H G
Sbjct: 7 GEKPYVCQECGKAFTQSSCLSIHRRVHTG 35
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 97 GVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G K + C+ CGK F+ L H R H GE
Sbjct: 7 GEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSN 44
Y C ECGK FT+ L+ H VH G S
Sbjct: 11 YVCQECGKAFTQSSCLSIHRRVHTGESG 38
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAH 95
KPYVC CGK FV++S L HI H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTH 123
K + CE CGK F L H+R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
YKC CGK F Q H+ +H + H G+KP
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C CGK F + S L H H GVK
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYG 41
Y+C ECGK FT+ L H +H G
Sbjct: 12 PYKCNECGKVFTQNSHLANHQRIHTG 37
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKG 125
K + C CGK+F+ L H R H G
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTG 37
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C+ CGKAF R S L H +H G +
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYG 41
Y+C +CGK FTRK L+ H H G
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTG 37
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K + C CGK F+ K GL H ++H GE
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAH 95
KPY C CGKAFV ++ L +H+ H
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAH 67
Y C +CGK F+ H+ H++ H
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVH 35
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVH 39
Y C CGK F LN HL VH
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVH 35
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K ++C CGK F L H+R H E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
YKC CGK F Q H+ +H + H G KP
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C CGK F + S L H H G K
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYG 41
Y+C ECGK FT+ L H +H G
Sbjct: 12 PYKCNECGKVFTQNSHLTNHWRIHTG 37
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K + C CGK+F+ L H R H GE
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGE 38
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 71 KPYVCTY--CGKAFVRASDLKRHIDAHLGVK 99
KP+ CT+ CG F R+ +L RH +H GVK
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVK 41
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGS 42
Y+C +CGK F++K SL H+ VH GS
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGS 37
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K + C+ CGK FS K L H+R H G
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGS 37
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLG 97
KPY C CGKAF + L HI H G
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
Y+C CGK F Q + HI+ H G P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYG 41
++C ECGK FTRK +L+ H +H G
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTG 37
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 73 YVCTYCGKAFVRASDLKRHIDAHLGVK 99
+ CT CGKAF R S L H H G K
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEK 39
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K F C CGK F+ K L H + H GE
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGE 38
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYG 41
Y+CGECGK F +K +L H +H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 32.7 bits (73), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C CGKAF + ++L +H H G K
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 28.9 bits (63), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K + C CGK F+ K L H R H GE
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGE 38
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
Y+C CGK F Q ++ H + H G KP
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 70 LKPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
+KPYVC +C + F L+RH+ H G K
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 98 VKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+K + C C + F+ L+ HVR H GE
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGE 29
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 73 YVCTY--CGKAFVRASDLKRHIDAHLGVKKFAC--ETCGKLFSSKHGLKYHVRTHKG 125
YVC + CGKAF + + LK H +H + C E C K FS LK H + H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 22 CGKQFTRKFSLNAHLHVHYGSSNYKCPL--CGKFFIQLCHMKDHIQAHGGL---KPYVCT 76
CGK F + L H H Y+CP C K F +K H + H G K C+
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 77 YCGKAFV 83
+ GK +
Sbjct: 69 FVGKTWT 75
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
YKC +CGK F Q H++ H + H G KP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 101 FACETCGKLFSSKHGLKYHVRTHKGE 126
+ C+ CGK FS L+ H R H GE
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGE 38
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 73 YVCTYCGKAFVRASDLKRHIDAHLGVK 99
Y C CGK F ++S L+ H H G K
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYG 41
Y+C CGK+F++ L H VH G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 33.1 bits (74), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 73 YVCTY--CGKAFVRASDLKRHIDAHLGVKKFAC--ETCGKLFSSKHGLKYHVRTHKG 125
YVC + CGKAF + + LK H +H + C E C K FS LK H + H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 22 CGKQFTRKFSLNAHLHVHYGSSNYKCPL--CGKFFIQLCHMKDHIQAHGGL---KPYVCT 76
CGK F + L H H Y+CP C K F +K H + H G K C+
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 77 YCGKAFV 83
+ GK +
Sbjct: 69 FVGKTWT 75
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C CGK F + S L RH H G K
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
YKC CGK F Q H+ H H G KP
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYG 41
Y+C ECGK FT+ L H +H G
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTG 37
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 98 VKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+K + C CGK F SK L H RTH GE
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 32.0 bits (71), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 70 LKPYVCTYCGKAFVRASDLKRHIDAHLG 97
+KPYVC CGKAF S L H H G
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTG 37
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 13/27 (48%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSS 43
Y C ECGK F K L H H G S
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGES 39
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C CGK F + S L RH H G K
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
YKC CGK F Q H+ H H G KP
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYG 41
Y+C ECGK FT+ L H +H G
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTG 37
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KP C CGKAF +AS L H+ H G K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 18 QCGECGKQFTRKFSLNAHLHVHYG 41
QC CGK FT+ SL AH+ H G
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTG 27
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 103 CETCGKLFSSKHGLKYHVRTHKGE 126
C CGK F+ L HVR H GE
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGE 28
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGS 42
YQC ECGK F+++ SL H +H GS
Sbjct: 11 YQCKECGKSFSQRGSLAVHERLHTGS 36
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 69 GLKPYVCTYCGKAFVRASDLKRHIDAHLG 97
G KPY C CGK+F + L H H G
Sbjct: 7 GEKPYQCKECGKSFSQRGSLAVHERLHTG 35
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 97 GVKKFACETCGKLFSSKHGLKYHVRTHKG 125
G K + C+ CGK FS + L H R H G
Sbjct: 7 GEKPYQCKECGKSFSQRGSLAVHERLHTG 35
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C+ CGK+F + S L H H G K
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYG 41
Y+C CGK FT+K L+ H +H G
Sbjct: 12 PYECSICGKSFTKKSQLHVHQQIHTG 37
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
Y+C +CGK F + + H Q H G KP
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K + C CGK F+ K L H + H GE
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGE 38
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C CGK F + S L RH H G K
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGK 39
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
YKC CGK F Q H+ H + H G KP
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 28.9 bits (63), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYG 41
Y+C ECGK FT+ L H VH G
Sbjct: 12 PYKCNECGKVFTQNSHLARHRRVHTG 37
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKG 125
K + C CGK+F+ L H R H G
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTG 37
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.3 bits (72), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K + C CGK FS K L H RTH GE
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGE 38
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYG 41
Y C ECGK F++K L+AH H G
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTG 37
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C CGK F + S L H H G K
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEK 39
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 32.3 bits (72), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
YKC CG F+Q+ H++ H+ H G P
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLG 97
KPY C CG FV+ + L+ H+ H G
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTG 36
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGS 42
Y+C CG +F + L AH+ +H GS
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGS 37
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKG 125
K + CETCG F L+ HV H G
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTG 36
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C CGK F + S L RH H G K
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEK 39
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
YKC CGK F Q H+ H H G KP
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYG 41
Y+C ECGK FT+ L H +H G
Sbjct: 12 PYKCNECGKVFTQNSHLVRHRGIHTG 37
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 32.3 bits (72), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 70 LKPYVCTYCGKAFVRASDLKRHIDAH 95
+KPY C YCG++F + RH++ H
Sbjct: 1 MKPYQCDYCGRSFSDPTSKMRHLETH 26
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.0 bits (71), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 15 SAYQCGECGKQFTRKFSLNAHLHVHYG 41
+ Y+C ECGK F+RK+ L +H H G
Sbjct: 11 NPYECHECGKAFSRKYQLISHQRTHAG 37
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 101 FACETCGKLFSSKHGLKYHVRTHKGE 126
+ C CGK FS K+ L H RTH GE
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGE 38
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 14/29 (48%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
PY C CGKAF R L H H G K
Sbjct: 11 NPYECHECGKAFSRKYQLISHQRTHAGEK 39
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYG 41
Y+C ECGK F RK +L H +H G
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTG 37
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 73 YVCTYCGKAFVRASDLKRHIDAHLGVK 99
Y C+ CGKAF R S L H H G K
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEK 39
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 101 FACETCGKLFSSKHGLKYHVRTHKGE 126
+ C CGK F+ K L H R H GE
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGE 38
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 32.0 bits (71), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 11 ATTTSAYQCGECGKQFTRKFSLNAHLHVHYGSS 43
++ + Y+C ECGK F RK L +H H G S
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTHAGES 37
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 69 GLKPYVCTYCGKAFVRASDLKRHIDAHLG 97
G PY C+ CGKAF R L H H G
Sbjct: 7 GENPYECSECGKAFNRKDQLISHQRTHAG 35
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 97 GVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G + C CGK F+ K L H RTH GE
Sbjct: 7 GENPYECSECGKAFNRKDQLISHQRTHAGE 36
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 16/29 (55%)
Query: 69 GLKPYVCTYCGKAFVRASDLKRHIDAHLG 97
G KPYVC CGKAF S L H H G
Sbjct: 7 GQKPYVCNECGKAFGLKSQLIIHERIHTG 35
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 97 GVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G K + C CGK F K L H R H GE
Sbjct: 7 GQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSN 44
Y C ECGK F K L H +H G S
Sbjct: 11 YVCNECGKAFGLKSQLIIHERIHTGESG 38
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 32.0 bits (71), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYGS 42
Y+C ECGK F +K SL H +H GS
Sbjct: 10 VYECQECGKSFRQKGSLTLHERIHTGS 36
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 97 GVKKFACETCGKLFSSKHGLKYHVRTHKG 125
G + + C+ CGK F K L H R H G
Sbjct: 7 GQRVYECQECGKSFRQKGSLTLHERIHTG 35
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 70 LKPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
+KPY+C CGKAF S L H H G K
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEK 39
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYG 41
Y C ECGK F+ SL H +H G
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTG 37
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 98 VKKFACETCGKLFSSKHGLKYHVRTHKGE 126
VK + C CGK FS L H H GE
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGE 38
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K F CE C K+F KH L+ H+R H E
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNE 35
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K F C+TC + FS LK H RTH GE
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGE 28
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KP+ C C + F R+ LK H H G K
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 97 GVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G K + C CGK FSSK L H R H GE
Sbjct: 7 GEKPYGCNECGKDFSSKSYLIVHQRIHTGE 36
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYG 41
Y C ECGK F+ K L H +H G
Sbjct: 11 YGCNECGKDFSSKSYLIVHQRIHTG 35
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 15/31 (48%)
Query: 69 GLKPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
G KPY C CGK F S L H H G K
Sbjct: 7 GEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 47 CPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHID 93
CP+CG+ F + H++ + + C YC F + L RHI+
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHIN 77
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 73 YVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVR 121
++C CG++F +RH+ + F C+ C F S GL H+
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHIN 77
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 23/56 (41%)
Query: 10 LATTTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQ 65
L+ + + C CG+ F K + HL + + + + C C F + HI
Sbjct: 22 LSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHIN 77
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAH 95
KPY+C CGKAF S+L +H H
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIH 35
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVH 39
Y C ECGK FT + +L H +H
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIH 35
>pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus
Thermophilus Hb8
Length = 253
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 38 VHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDL 88
V + PL + + L D ++A G++ V T GKAF +DL
Sbjct: 12 VFLNDPERRNPLSPEXALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADL 62
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 14 TSAYQCGECGKQFTRKFSLNAHLHVHYG 41
T ++QC ECG+ FT K LN H +H G
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTG 37
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 16/29 (55%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C CGK F R S L RH H G K
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEK 39
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
YKC CGK F + H+ H H G KP
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYG 41
Y+C ECGK F R L H +H G
Sbjct: 12 PYKCHECGKVFRRNSHLARHQLIHTG 37
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGV 98
KPY C CGKAF+ S L H H GV
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAGV 38
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSS 43
Y+C ECGK F K L H H G S
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAGVS 39
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKG 125
K + C CGK F K L H RTH G
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAG 37
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYG 41
Y+C ECGK F +K +L+ H +H G
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRG 37
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 73 YVCTYCGKAFVRASDLKRHIDAHLGVK 99
Y C+ CGKAF++ S L H H G K
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEK 39
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 101 FACETCGKLFSSKHGLKYHVRTHKGE 126
+ C CGK F K L H R H+GE
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGE 38
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
Y+C CGK FIQ + H + H G KP
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 69 GLKPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
G KP VC CGK F ++S L +H H G K
Sbjct: 7 GKKPLVCNECGKTFRQSSCLSKHQRIHSGEK 37
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 13/30 (43%)
Query: 97 GVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G K C CGK F L H R H GE
Sbjct: 7 GKKPLVCNECGKTFRQSSCLSKHQRIHSGE 36
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLG 97
KPY C+ CGK+F++ S L H H G
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTG 37
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYGSS 43
Y+C +CGK F +K L+ H +H G +
Sbjct: 12 PYECSDCGKSFIKKSQLHVHQRIHTGEN 39
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K + C CGK F K L H R H GE
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGE 38
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 98 VKKFACETCGKLFSSKHGLKYHVRTHKG 125
++ ++C CGK FS KH ++ H R H G
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 70 LKPYVCTYCGKAFVRASDLKRHIDAHLG 97
++PY C+ CGK F ++ H H G
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYG 41
Y C CGK+F+ K + H VH G
Sbjct: 4 YSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C CGKAF S+L H H G K
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYG 41
Y+C ECGK FT + +L H +H G
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTG 37
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K + C CGK F+ + L H + H GE
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGE 38
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
Y+C CGK F ++ H + H G KP
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C CGKAF + + L +H H G K
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEK 39
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
Y+C CGK F Q H+ H + H G KP
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYG 41
Y+C ECGK F++ L H VH G
Sbjct: 12 PYECKECGKAFSQTTHLIQHQRVHTG 37
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K + C+ CGK FS L H R H GE
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGE 38
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYGS 42
Y+C +CGK + R+ +L+ H VH G
Sbjct: 12 PYKCEDCGKGYNRRLNLDMHQRVHMGE 38
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C CGK + R +L H H+G K
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K + CE CGK ++ + L H R H GE
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGE 38
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYG 41
+QC ECGK+FT+ L++H VH G
Sbjct: 12 PFQCEECGKRFTQNSHLHSHQRVHTG 37
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K F CE CGK F+ L H R H GE
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGE 38
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KP+ C CGK F + S L H H G K
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
++C CGK F Q H+ H + H G KP
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
Length = 66
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 41 GSSNYKCPLCGKFFIQLCHM-KDHIQAHG-GLKPYVCTYCGKAFVRASDLKRHI 92
G Y+C +C + + + + + ++ +H +K Y C +C K F R ++ H+
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 69 GLKPYVCTYCGKAFVRASDLKRH-IDAH-LGVKKFACETCGKLFSSKHGLKYHVR 121
G Y C C + + S+ RH + +H VK + C C K F+ K + HV+
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHV 38
Y C C K+FTRK ++ AH+ +
Sbjct: 40 VYPCPFCFKEFTRKDNMTAHVKI 62
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C+ CGKAF R + L H H G +
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYR 39
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYG 41
Y+C ECGK F R LN H +H G
Sbjct: 12 PYKCSECGKAFHRHTHLNEHRRIHTG 37
Score = 29.3 bits (64), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
YKC CGK F + H+ +H + H G +P
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 16/29 (55%)
Query: 69 GLKPYVCTYCGKAFVRASDLKRHIDAHLG 97
G KPY CT CGKAF S L H H G
Sbjct: 7 GEKPYECTDCGKAFGLKSQLIIHQRTHTG 35
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 97 GVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G K + C CGK F K L H RTH GE
Sbjct: 7 GEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSN 44
Y+C +CGK F K L H H G S
Sbjct: 11 YECTDCGKAFGLKSQLIIHQRTHTGESG 38
>pdb|2EOX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
315- 345) Of Human Zinc Finger Protein 473
Length = 44
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVH 39
Y C ECGK FTR F L H +H
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIH 35
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 73 YVCTYCGKAFVRASDLKRHIDAH 95
Y C CGKAF R L RH H
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIH 35
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 97 GVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G K ++C CG F K + YHVR+H G
Sbjct: 7 GEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 69 GLKPYVCTYCGKAFVRASDLKRHIDAHLG 97
G KPY C CG F R + H+ +H G
Sbjct: 7 GEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 41 GSSNYKCPLCGKFFIQLCHMKDHIQAHGG 69
G Y CP+CG F + M H+++H G
Sbjct: 7 GEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCG 51
Y C CG +F RK ++ H+ H GS P G
Sbjct: 11 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG 45
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 15/28 (53%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K F C CGK FS GL H R H GE
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGE 38
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYG 41
+ C +CGK F+ LN H +H G
Sbjct: 12 PFDCIDCGKAFSDHIGLNQHRRIHTG 37
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KP+ C CGKAF L +H H G K
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEK 39
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K F C C K F++K L H RTH GE
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGE 38
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KP+ C+ C KAF S+L H H G K
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEK 39
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 72 PYVCTYCGKAFVRASDLKRHIDAHLGVK 99
P C CGK F + +LKRH+ H G K
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGS 42
+C ECGKQFT +L HL +H G
Sbjct: 3 LKCRECGKQFTTSGNLKRHLRIHSGE 28
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 101 FACETCGKLFSSKHGLKYHVRTHKGE 126
C CGK F++ LK H+R H GE
Sbjct: 3 LKCRECGKQFTTSGNLKRHLRIHSGE 28
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 47 CPLCGKFFIQLCHMKDHIQAHGGLKPY 73
C +CGK F + H+ H +H G KPY
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPY 41
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K+ ACE CGK+F + L H +H GE
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGE 38
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYG 41
Y+C ECGK F+R L+ H +H G
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
K Y C CGK F R S L +H H G K
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K++ C CGK+FS L H + H GE
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGE 38
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
YKC CGK F + + H + H G KP
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 15/29 (51%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C CGKAF S L H H G K
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYG 41
Y+C +CGK F+ + SL H +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K + C CGK FS + L H H G+
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGK 38
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 15/29 (51%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C CGK F S L RH H G K
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEK 39
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K + C CGK+F L H R H GE
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGE 38
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
YKC CGK F ++ H + H G KP
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYG 41
Y+C ECGK F L+ H +H G
Sbjct: 12 PYKCNECGKVFRHNSYLSRHQRIHTG 37
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVKK 100
KPY C CGKAF S+L H H G K+
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEKR 40
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 11 ATTTSAYQCGECGKQFTRKFSLNAHLHVHYG 41
T Y+C ECGK F + +L H +H G
Sbjct: 7 GTKEKPYKCYECGKAFRTRSNLTTHQVIHTG 37
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 71 KPYVCTYCGKAFVRASDLKRH 91
KPY C CGKAF++ + L RH
Sbjct: 11 KPYECIECGKAFIQNTSLIRH 31
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 15 SAYQCGECGKQFTRKFSLNAHLHVHYGSS 43
+ Y+C ECGK F+RK L +H H G S
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQKTHSGQS 39
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 12/27 (44%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLG 97
PY C CGK F R L H H G
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQKTHSG 37
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 101 FACETCGKLFSSKHGLKYHVRTHKGE 126
+ C CGK+FS K L H +TH G+
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQ 38
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
+KC CGK FIQ H+ H + H G KP
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
+P+ C CGK+F++++ L +H H G K
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEK 39
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYG 41
++C ECGK F+R+ +LN H +H G
Sbjct: 12 PFKCVECGKGFSRRSALNVHHKLHTG 37
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KP+ C CGK F R S L H H G K
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEK 39
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K F C CGK FS + L H + H GE
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGE 38
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K F CE CGK F+ L H R H GE
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGE 38
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYG 41
++C ECGK+FT+ L++H VH G
Sbjct: 12 PFKCEECGKRFTQNSQLHSHQRVHTG 37
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KP+ C CGK F + S L H H G K
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEK 39
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
+KC CGK F Q + H + H G KP
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C CGKAF S+L H H G K
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEK 39
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYG 41
Y+C ECGK F +L H +H G
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTG 37
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYG 41
Y+C +CGK + KF+L+ H VH G
Sbjct: 12 PYKCEKCGKGYNSKFNLDMHQKVHTG 37
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K + CE CGK ++SK L H + H GE
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGE 38
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C CGK + +L H H G +
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGER 39
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 71 KPYVCTYCGKAFVRASDLKRHI 92
KPY+C CGK F R L HI
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHI 32
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 16 AYQCGECGKQFTRKFSLNAHL-HVHYGSSNYKC 47
Y C CGK F+R LN H+ VH +KC
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K + C C K F++K L H RTH GE
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLG 97
KPY C C KAF S+L H H G
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTG 37
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSS 43
Y+C EC K F K +L H H G S
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGES 39
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C C KAF + + L +H H G K
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
Y+C +C K F Q H+ H + H G KP
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K + C+ C K F+ K L H +TH GE
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGE 38
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
+KC CGK F Q H+ H++ H G KP
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 29.3 bits (64), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYG 41
++C ECGK F + L +HL +H G
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTG 37
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KP+ C CGKAF + L H+ H G K
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEK 39
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K F C+ CGK F L H+R H GE
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGE 38
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYGS 42
Y+C ECGK + R+ L+ H VH G
Sbjct: 12 PYKCVECGKGYKRRLDLDFHQRVHTGE 38
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C CGK + R DL H H G K
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K + C CGK + + L +H R H GE
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGE 38
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 70 LKPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
+KPY C+ C K F S L H +H GVK
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVK 39
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 98 VKKFACETCGKLFSSKHGLKYHVRTHKG 125
VK + C C K FS K L H R+H G
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTG 37
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 15/29 (51%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C CGKAF S L H H G K
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEK 39
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K + C CGK F ++ L H TH GE
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGE 38
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYG 41
Y+C ECGK F + SL H H G
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSG 37
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYG 41
++CGECGK + ++ L H VH G
Sbjct: 12 PFKCGECGKSYNQRVHLTQHQRVHTG 37
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
+KC CGK + Q H+ H + H G KP
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K F C CGK ++ + L H R H GE
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGE 38
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KP+ C CGK++ + L +H H G K
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEK 39
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KP+ CT+CGK+F +L H H G K
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K F C CGK F +K L H R H GE
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGE 38
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C CGK+F AS L +H H G K
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEK 39
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C+ CGK+F S L+ H H G +
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYG 41
Y+C +CGK FT K L H H G
Sbjct: 12 PYKCSDCGKSFTWKSRLRIHQKCHTG 37
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K + C CGK F+ K L+ H + H GE
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 101 FACETCGKLFSSKHGLKYHVRTHKGE 126
F CE C + F+ + LK H R+H E
Sbjct: 3 FVCEVCTRAFARQEALKRHYRSHTNE 28
Score = 28.9 bits (63), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 72 PYVCTYCGKAFVRASDLKRHIDAHLGVK 99
+VC C +AF R LKRH +H K
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLG 97
KPY C CGKAF +S L +H H G
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSG 37
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
YKC +CGK F H+ H H G +P
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KP+ C CGK+F +S L H H G K
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEK 39
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 14/28 (50%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K F C CGK FS L H R H GE
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGE 38
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYG 41
++C ECGK F+ L H +H G
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTG 37
>pdb|2ELP|A Chain A, Solution Structure Of The 13th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 37
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 75 CTYCGKAFVR-ASDLKRHIDAHLGVK 99
C YC F++ SDL+RHI AH GVK
Sbjct: 12 CPYCDFYFMKNGSDLQRHIWAHEGVK 37
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C+ CGKAF L H H G K
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K + C CGK FS + L H R H G+
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGK 38
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYG 41
Y+C CGK F+ + SL+ H +H G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
++C CGKFF+Q + H + H G KP
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 75 CTYCGKAFVRASDLKRHIDAHLGVK 99
C+ CGK F++AS+ +H H G K
Sbjct: 15 CSDCGKFFLQASNFIQHRRIHTGEK 39
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYG 41
++C EC K FT+ SL H +H G
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTG 37
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K F C C K F+ L H R H GE
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGE 38
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVH 39
YQC ECGK F+ + L H H
Sbjct: 12 PYQCSECGKSFSGSYRLTQHWITH 35
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAH 95
KPY C+ CGK+F + L +H H
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITH 35
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.9 bits (63), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 72 PYVCTYCGKAFVRASDLKRHIDAHLGVK 99
+VC C +AF R LKRH +H K
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 101 FACETCGKLFSSKHGLKYHVRTHKGE 126
F CE C + F+ + LK H R+H E
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNE 28
>pdb|3IUF|A Chain A, Crystal Structure Of The C2h2-Type Zinc Finger Domain Of
Human Ubi-D4
Length = 48
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 99 KKFACETCGKLFSSKHGLKYH 119
K +AC+ CGK + ++ GL YH
Sbjct: 6 KPYACDICGKRYKNRPGLSYH 26
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 101 FACETCGKLFSSKHGLKYHVRTHKGE 126
F C CGK+F+ K L H + H GE
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGE 38
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLG 97
P++C+ CGK F ++L H H G
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTG 37
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 15 SAYQCGECGKQFTRKFSLNAHLHVHYG 41
+ + C ECGK FT K +L H +H G
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTG 37
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 71 KPYVCTYCGKAFVRASDLKRHI 92
K Y C YC K F +S+LK HI
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHI 22
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C CGK F+ DL H H G K
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEK 39
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHL 96
+PY C CGK F R S L H+ H
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRHF 36
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHY 40
Y C ECGK F R L HL H+
Sbjct: 12 PYGCNECGKNFGRHSHLIEHLKRHF 36
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
+PY C CGKAF S L H +H G K
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEK 39
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYG 41
Y+C ECGK F K SL H H G
Sbjct: 12 PYECIECGKAFKTKSSLICHRRSHTG 37
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ + C CGK F +K L H R+H GE
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGE 38
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 101 FACETCGKLFSSKHGLKYHVRTHKGE 126
F CE C + F+ + LK H R+H E
Sbjct: 3 FVCEVCTRAFARQEYLKRHYRSHTNE 28
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 72 PYVCTYCGKAFVRASDLKRHIDAHLGVK 99
+VC C +AF R LKRH +H K
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSHTNEK 29
>pdb|1ZFD|A Chain A, Swi5 Zinc Finger Domain 2, Nmr, 45 Structures
Length = 32
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 71 KPYVCTY--CGKAFVRASDLKRHIDAH 95
+PY C + C KAFVR DL RH +H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSH 28
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVH 39
++C ECGK F R+ L HL +H
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLH 35
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAH 95
+P+ C CGK F R S L H+ H
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLH 35
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc
Finger Protein 32
Length = 42
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 15 SAYQCGECGKQFTRKFSLNAH 35
+ Y CG+CGK FT++ SL H
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVH 30
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C CGKAF S +H H G +
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQR 39
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KP+ C CGK+F S L RH H K
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEK 39
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 15/30 (50%)
Query: 97 GVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G K C CGK FS K L H R H GE
Sbjct: 7 GEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLG 97
KPY C CG F LK H+ H G
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTG 36
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKG 125
K + CE CG F LK H+R H G
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTG 36
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
Y C +CG F L +K H++ H G P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYGS 42
Y C CG +F +L +HL +H GS
Sbjct: 11 PYPCEICGTRFRHLQTLKSHLRIHTGS 37
>pdb|2ELX|A Chain A, Solution Structure Of The 8th C2h2 Zinc Finger Of Mouse
Zinc Finger Protein 406
Length = 35
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 41 GSSNYKCPLCGKFFIQLCHMKDHI-QAHG 68
GSS Y C LC K F+ ++ HI + HG
Sbjct: 4 GSSGYVCALCLKKFVSSIRLRSHIREVHG 32
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGG 69
Y+C C K FIQ+ H+ H + H G
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTG 37
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLG 97
KPY C C K F++ L +H H G
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTG 37
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYG 41
Y+C EC K F + LN H VH G
Sbjct: 12 PYECKECRKTFIQIGHLNQHKRVHTG 37
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 97 GVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G K F C C K FSSK L H +TH E
Sbjct: 7 GEKPFGCSCCEKAFSSKSYLLVHQQTHAEE 36
>pdb|3VTH|A Chain A, Crystal Structure Of Full-Length Hypf In The Phosphate-
And Nucleotide-Bound Form
pdb|3VTH|B Chain B, Crystal Structure Of Full-Length Hypf In The Phosphate-
And Nucleotide-Bound Form
pdb|3VTI|A Chain A, Crystal Structure Of Hype-Hypf Complex
pdb|3VTI|B Chain B, Crystal Structure Of Hype-Hypf Complex
Length = 761
Score = 27.3 bits (59), Expect = 2.6, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 72 PYV-CTYCGKAFVRASDLKRHIDAHLGVKKFA-CETCGKLFSSKHGLKYHVR 121
P++ CT CG F D+ + A +K F CE C + + H ++H +
Sbjct: 132 PFINCTNCGPRFSIIEDIP-YDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQ 182
>pdb|1VA3|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 3)
pdb|1SP1|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f3, Minimized Average Structure
Length = 29
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
KKFAC C K F L H++TH+ +
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNK 28
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
K + C C K F+R+ L +HI H K
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNKK 29
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 11 ATTTSAYQCGECGKQFTRKFSLNAHLHVHYG 41
T ++C C K F ++ +LN+H +H G
Sbjct: 7 GTAEKPFRCDTCDKSFRQRSALNSHRMIHTG 37
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K F C+TC K F + L H H GE
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGE 38
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C C KAF + L +H H G K
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K + C+ C K FS L H R H GE
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGE 38
>pdb|2CTD|A Chain A, Solution Structure Of Two Zf-C2h2 Domains From Human Zinc
Finger Protein 512
Length = 96
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 74 VCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTH 123
C G+ + LK+H++ + + F C CGK S G+KYHV +
Sbjct: 39 TCQAVGRKTIEG--LKKHME-NCKQEMFTCHHCGKQLRSLAGMKYHVMAN 85
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYG 41
Y C ECGK F+R L H +H G
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSG 37
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 73 YVCTYCGKAFVRASDLKRHIDAHLGVK 99
Y C CGK+F RA L +H H G K
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEK 39
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K F CE CGK F + H R+H GE
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGE 38
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KP+ C CGK F S H +H G K
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEK 39
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 68 GGLKPYVCTYCGKAFVRASDLKRHIDAH 95
G +P+VC C AF ++ RH+ H
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVH 30
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KP CT CGKAF S L H H+ K
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTHVDDK 39
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 15 SAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHI 64
S + C C F+ SL H + Y CP+C K F DH+
Sbjct: 73 SQFVCPLCLMPFSSSVSLKQH--IRYTEHTKVCPVCKKEFTSTDSALDHV 120
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 43 SNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHI 92
S + CPLC F +K HI+ K VC C K F H+
Sbjct: 73 SQFVCPLCLMPFSSSVSLKQHIRYTEHTK--VCPVCKKEFTSTDSALDHV 120
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 64 IQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHV 120
+ A + +VC C F + LK+HI K C C K F+S HV
Sbjct: 66 LLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTK--VCPVCKKEFTSTDSALDHV 120
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 78
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 11 ATTTSAYQCGECGKQFTRKFSLNAHLHVH---YGSSNYKCPLCGKFFIQLCHMKDHIQAH 67
++ +S QC CG +K SLN H H + + C CGK F D + AH
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRF----EKPDSVAAH 57
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 41 GSSNYKCPLCGKFFIQLC----HMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRH 91
GSS +C +CG Q H + H + L+ + C +CGK F + + H
Sbjct: 4 GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAH 57
>pdb|2L7X|A Chain A, Crimean Congo Hemorrhagic Fever Gn Zinc Finger
Length = 77
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 70 LKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHV 120
LKP CT C V A D + H L C C +S GL HV
Sbjct: 3 LKPQTCTICETTPVNAIDAEMH---DLNCSYNICPYCASRLTS-DGLARHV 49
>pdb|2PMZ|P Chain P, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|2PMZ|Z Chain Z, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|2WAQ|P Chain P, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|P Chain P, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|X Chain X, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|3HKZ|P Chain P, The X-Ray Crystal Structure Of Rna Polymerase From
Archaea
pdb|3HKZ|X Chain X, The X-Ray Crystal Structure Of Rna Polymerase From
Archaea
pdb|2Y0S|P Chain P, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase
In P21 Space Group
pdb|2Y0S|X Chain X, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase
In P21 Space Group
pdb|4AYB|P Chain P, Rnap At 3.2ang
pdb|4B1O|P Chain P, Archaeal Rnap-Dna Binary Complex At 4.32ang
pdb|4B1P|X Chain X, Archaeal Rnap-Dna Binary Complex At 4.32ang
Length = 48
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 8/37 (21%)
Query: 15 SAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCG 51
+ Y+CG+C K FT + L V G +CP CG
Sbjct: 2 AVYRCGKCWKTFT-----DEQLKVLPGV---RCPYCG 30
>pdb|2YSO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
656- 688) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYGSSN 44
++QC ECG+ F + SL H +H G N
Sbjct: 12 SHQCRECGEIFFQYVSLIEHQVLHMGQKN 40
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K C+ CGK F L+ H R H GE
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGE 38
>pdb|1ZNM|A Chain A, A Zinc Finger With An Artificial Beta-Turn, Original
Sequence Taken From The Third Zinc Finger Domain Of The
Human Transcriptional Repressor Protein Yy1 (Ying And
Yang 1, A Delta Transcription Factor), Nmr, 34
Structures
Length = 28
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 72 PYVCTY--CGKAFVRASDLKRHIDAHLG 97
P+ CT+ CGK F +LK H+ H G
Sbjct: 1 PFQCTFXCCGKRFSLDFNLKTHVKIHTG 28
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 72 PYVCTYCGKAFVRASDLKRHIDAHLG 97
P+ C CGK F ++ L +H H G
Sbjct: 12 PFKCNECGKTFSHSAHLSKHQLIHAG 37
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCG 51
++C ECGK F+ L+ H +H G N P G
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAG-ENPSGPSSG 46
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
+KC CGK F H+ H H G P
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2DMI|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Like Domains Of Human Teashirt Homolog 3
Length = 115
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 5/86 (5%)
Query: 12 TTTSAYQCGECGKQFTRKFSLNAHLHV--HYGSSNYKCPLCGKFFIQLCHMKDHIQAHG- 68
T S ++C +C + L H++ HY N++ + ++ G
Sbjct: 15 TGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGK 74
Query: 69 --GLKPYVCTYCGKAFVRASDLKRHI 92
K C YCG +F DL H+
Sbjct: 75 EDAQKVLKCMYCGHSFESLQDLSVHM 100
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 13/28 (46%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K C CGK FS L H R H GE
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGE 38
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 25.4 bits (54), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVH 39
+QC ECG F+ SL HL H
Sbjct: 12 PFQCKECGMNFSWSCSLFKHLRSH 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.139 0.466
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,022,803
Number of Sequences: 62578
Number of extensions: 148938
Number of successful extensions: 1330
Number of sequences better than 100.0: 215
Number of HSP's better than 100.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 469
Number of HSP's gapped (non-prelim): 764
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)