RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13123
(129 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 99.8 bits (250), Expect = 1e-27
Identities = 51/110 (46%), Positives = 64/110 (58%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
Y+C ECGK F+++ +L AH H G Y CP CGK F QL H++ H + H G KPY C
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137
Query: 77 YCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
CGK+F R +L H H G K + C CGK FS + L H RTH G+
Sbjct: 138 ECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGK 187
Score = 99.4 bits (249), Expect = 1e-27
Identities = 50/110 (45%), Positives = 60/110 (54%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
Y C ECGK F+R L H H G YKCP CGK F + H + H G KPY C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 77 YCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
CGK+F + ++L+ H H G K +AC CGK FS L+ H RTH GE
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGE 131
Score = 99.1 bits (248), Expect = 2e-27
Identities = 50/110 (45%), Positives = 62/110 (56%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
Y+C ECGK F+ K L H H G YKCP CGK F Q +++ H + H G KPY C
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACP 109
Query: 77 YCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
CGK+F + + L+ H H G K + C CGK FS + L H RTH GE
Sbjct: 110 ECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGE 159
Score = 84.0 bits (209), Expect = 1e-21
Identities = 42/101 (41%), Positives = 51/101 (50%)
Query: 26 FTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRA 85
S A + G Y CP CGK F + H+ +H + H G KPY C CGK+F
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62
Query: 86 SDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
DL RH H G K + C CGK FS + L+ H RTH GE
Sbjct: 63 KDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGE 103
Score = 50.5 bits (122), Expect = 7e-09
Identities = 24/56 (42%), Positives = 32/56 (57%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
Y+C ECGK F+R+ +L+ H H G YKCP CGK F + + H + H G K
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 96.4 bits (241), Expect = 3e-27
Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Query: 17 YQCG--ECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYV 74
C C K F ++ HLH H G + C CGK F++ +K H H G KP+
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQ 64
Query: 75 CTY--CGKAFVRASDLKRHIDAHLGVKKFACET--CGKLFSSKHGLKYHVRTHKGE 126
CT+ CGK F +L+ H+ H G + + C C K F+ LK H+ TH
Sbjct: 65 CTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKA 120
Score = 75.6 bits (187), Expect = 6e-19
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPL--CGKFFIQLCHMKDHIQAHGGLKPYV 74
+ C ECGK F L H VH G ++C CGK F +++ H++ H G +PYV
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYV 94
Query: 75 CTY--CGKAFVRASDLKRHIDAHLGVKKF 101
C + C K F ++++LK HI H K
Sbjct: 95 CPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 30.2 bits (69), Expect = 0.093
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 17 YQCG--ECGKQFTRKFSLNAHLHVHYGSSNYK 46
Y C C K+F + +L +H+ H + N +
Sbjct: 93 YVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 96.4 bits (241), Expect = 4e-27
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDH---IQAHGGLKPY 73
+C C K+F K+ L H H G ++CP CGK + + ++ +H + + +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 74 VCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYH-VRTHKGE 126
C+ C + F R +L+ H+ +H G + C +C + F K L+ H ++ H G
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGP 121
Score = 78.3 bits (194), Expect = 4e-20
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 39 HYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRH---IDAH 95
GSS +CP C K F+ ++K H + H G KP+ C CGK + R +L H +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 96 LGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ F C C + F + L+ H+ +H GE
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGE 92
Score = 56.7 bits (138), Expect = 1e-11
Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 66 AHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVR---T 122
G C C K F+ LK H H G K F C CGK + K L H
Sbjct: 1 GSSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCM 60
Query: 123 HKGE 126
++ E
Sbjct: 61 NRSE 64
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 96.0 bits (240), Expect = 4e-27
Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 17 YQCGE--CGKQFTRKFSLNAHLHVHYGSSNYKCPL--CGKFFIQLCHMKDHIQAHGGLKP 72
+ C C K++ + L H H G Y+C C + F + +K H + H G+KP
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 73 YVCTYCGKAFVRASDLKRHIDAHLGVKKFACET--CGKLFSSKHGLKYHVRTH 123
+ C C + F R+ LK H H G K F+C C K F+ L H H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 85.3 bits (212), Expect = 8e-23
Identities = 38/86 (44%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 45 YKC--PLCGKFFIQLCHMKDHIQAHGGLKPYVCTY--CGKAFVRASDLKRHIDAHLGVKK 100
+ C P C K + +L H++ H + H G KPY C + C + F R+ LKRH H GVK
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 101 FACETCGKLFSSKHGLKYHVRTHKGE 126
F C+TC + FS LK H RTH GE
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGE 92
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 94.3 bits (235), Expect = 5e-26
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 13/123 (10%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYK---------CPLCGKFFIQLCHMKDHIQAH 67
C + F+ L H+ + + + CP GK F + +HI+ H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 68 GGLKPYVCTY--CGKAFVRASDLKRHIDAHLGVKKFACET--CGKLFSSKHGLKYHVRTH 123
G KP+ C + CGK F R+ +LK H H G K F CE C + F++ K H+ H
Sbjct: 86 TGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Query: 124 KGE 126
+
Sbjct: 146 TSD 148
Score = 82.3 bits (204), Expect = 3e-21
Identities = 30/118 (25%), Positives = 40/118 (33%), Gaps = 11/118 (9%)
Query: 20 GECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYV----- 74
G G + + + C + F + + H+ P
Sbjct: 1 GSSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 75 ----CTYCGKAFVRASDLKRHIDAHLGVKKFAC--ETCGKLFSSKHGLKYHVRTHKGE 126
C GK+F L HI H G K F C CGK+F+ LK H RTH GE
Sbjct: 61 YWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGE 118
Score = 76.6 bits (189), Expect = 4e-19
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPL--CGKFFIQLCHMKDHIQAHGGLKPYV 74
+C GK F K+ L H+ VH G + CP CGK F + ++K H + H G KP+
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Query: 75 CTY--CGKAFVRASDLKRHIDAHLGVKKFAC 103
C + C + F +SD K+H+ H K
Sbjct: 123 CEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 52.3 bits (126), Expect = 1e-09
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 17 YQC--GECGKQFTRKFSLNAHLHVHYGSSNYKCPL--CGKFFIQLCHMKDHIQAHGGLKP 72
+ C CGK F R +L H H G +KC C + F K H+ H K
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS 150
Query: 73 YVCT 76
+
Sbjct: 151 GPSS 154
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 91.5 bits (228), Expect = 6e-25
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 13/123 (10%)
Query: 17 YQCGECGKQFTRKFSLNAHL---HVHYGSSNYKCPLCG-----KFFIQLCHMKDHIQAHG 68
+ C ++F + L H+ H+H + C G + F + H++ H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 69 GLKPYVCTY--CGKAFVRASDLKRHIDAHLGVKKFACE--TCGKLFSSKHGLKYH-VRTH 123
G KP+ CT+ C K++ R +LK H+ +H G K + CE C K FS+ H RTH
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Query: 124 KGE 126
E
Sbjct: 124 SNE 126
Score = 90.0 bits (224), Expect = 2e-24
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 17 YQCGECG-----KQFTRKFSLNAHLHVHYGSSNYKCPL--CGKFFIQLCHMKDHIQAHGG 69
+ C G + F ++ L H+ H G +KC C K + +L ++K H+++H G
Sbjct: 35 FVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTG 94
Query: 70 LKPYVCTY--CGKAFVRASDLKRHID-AHLGVKKFACET--CGKLFSSKHGLKYHVRTHK 124
KPY+C + C KAF ASD +H + H K + C+ C K ++ L+ HV+T
Sbjct: 95 EKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Query: 125 G 125
G
Sbjct: 155 G 155
Score = 55.3 bits (134), Expect = 7e-11
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDA---HLGVKKFACETCG-----KLFSSKHGLKYHVRT 122
C + F L HI++ H K+F C G + F +++ L H+R
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 123 HKGE 126
H GE
Sbjct: 62 HTGE 65
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 87.1 bits (217), Expect = 1e-23
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
Y C +CGK FT K + H+ +H G Y C +CGK F H+ H++ H G+KPY C
Sbjct: 11 YPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 77 YCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGL 116
C K F+ RH+ K + + + G
Sbjct: 70 ICAKRFMWRDSFHRHV--TSCTKSYEAAKAEQNTTEASGP 107
Score = 69.0 bits (170), Expect = 1e-16
Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 3/89 (3%)
Query: 38 VHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLG 97
G Y C CGK F H+ H GL+PY C CGK F L H+ H G
Sbjct: 4 GSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG 62
Query: 98 VKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+K + C C K F + H
Sbjct: 63 IKPYECNICAKRFMWRDSF--HRHVTSCT 89
Score = 27.0 bits (61), Expect = 1.0
Identities = 2/18 (11%), Positives = 7/18 (38%)
Query: 17 YQCGECGKQFTRKFSLNA 34
Y+ + + T ++
Sbjct: 92 YEAAKAEQNTTEASGPSS 109
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 85.2 bits (212), Expect = 3e-23
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 45 YKCPL--CGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFA 102
Y CP+ C + F Q + HI+ H G KP+ C C + F R+ L HI H G K FA
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 103 CETCGKLFSSKHGLKYHVRTHKGE 126
C+ CG+ F+ K H + H +
Sbjct: 65 CDICGRKFARSDERKRHTKIHLRQ 88
Score = 81.7 bits (203), Expect = 8e-22
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 17 YQCG--ECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYV 74
Y C C ++F++ SL H+ +H G ++C +C + F + H+ HI+ H G KP+
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 75 CTYCGKAFVRASDLKRHIDAHLGVK 99
C CG+ F R+ + KRH HL K
Sbjct: 65 CDICGRKFARSDERKRHTKIHLRQK 89
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 88.0 bits (219), Expect = 4e-23
Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 10/120 (8%)
Query: 17 YQC--GECGKQFTRKFSLNAHLHVHYGSSNYKC--PLCGKFFIQLCHMKDHIQAHGGLKP 72
Y C +CG + + + L AHL H G + C C K F L H+ H H G K
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 72
Query: 73 YVCT--YCGKAFVRASDLKRHIDAHLGVKKF----ACETCGKLFSSKHGLKYHVRTHKGE 126
+ C C F +++K+H + +K E CGK F + LK H +H +
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQ 132
Score = 86.5 bits (215), Expect = 1e-22
Identities = 41/120 (34%), Positives = 51/120 (42%), Gaps = 10/120 (8%)
Query: 17 YQCGE--CGKQFTRKFSLNAHLHVHYGSSNYKC--PLCGKFFIQLCHMKDHIQAHGGLK- 71
+ C E C K FT L H H G N+ C C F +MK H +K
Sbjct: 43 FPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKI 102
Query: 72 -PYVCTY--CGKAFVRASDLKRHIDAHLGVKKFAC--ETCGKLFSSKHGLKYHVRTHKGE 126
YVC + CGKAF + + LK H +H + C E C K FS LK H + H G
Sbjct: 103 CVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 162
Score = 76.5 bits (189), Expect = 9e-19
Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 9/117 (7%)
Query: 17 YQCGE--CGKQFTRKFSLNAHLHVHYG--SSNYKCPL--CGKFFIQLCHMKDHIQAHGGL 70
+ C C +FT K ++ H + + Y C CGK F + +K H +H
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQ 132
Query: 71 KPYVCT--YCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSK-HGLKYHVRTHK 124
PY C C K F S LKRH H G ++C + + LK+ H+
Sbjct: 133 LPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 57.6 bits (140), Expect = 2e-11
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 63 HIQAHGGLKPYVCTY--CGKAFVRASDLKRHIDAHLGVKKFACE--TCGKLFSSKHGLKY 118
K Y+C++ CG A+ + L+ H+ H G K F C+ C K F+S H L
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 119 HVRTHKGE 126
H TH GE
Sbjct: 63 HSLTHTGE 70
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 81.8 bits (203), Expect = 6e-22
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACE 104
++C +C + F + H+ HI+ H G KP+ C CG+ F R+ + KRH D + +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPILED 62
Query: 105 TCGKLFSSKHGLKYHV---RTHKGE 126
+L S + L+ V + GE
Sbjct: 63 KVEELLSKNYHLENEVARLKKLVGE 87
Score = 61.7 bits (151), Expect = 6e-14
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 70 LKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTH 123
+KP+ C C + F R+ L HI H G K FAC+ CG+ F+ K H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ 54
Score = 47.1 bits (113), Expect = 2e-08
Identities = 7/49 (14%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQ 65
+ C CG++F R H + + + H+++ +
Sbjct: 32 FACDICGRKFARSDERKRHRDIQ-HILPILEDKVEELLSKNYHLENEVA 79
Score = 36.3 bits (85), Expect = 3e-04
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 98 VKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+K F C C + FS L H+RTH GE
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGE 29
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 80.4 bits (199), Expect = 3e-21
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 26 FTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTY--CGKAFV 83
+HY P C K + + H+K H++ H G KPY CT+ C F
Sbjct: 3 SGSSGPDLEKRRIHYCD----YPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFA 58
Query: 84 RASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTH 123
R+ +L RH H G K F C C + FS L H++ H
Sbjct: 59 RSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 49.5 bits (119), Expect = 4e-09
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 71 KPYVCT--YCGKAFVRASDLKRHIDAHLGVKKFAC--ETCGKLFSSKHGLKYHVRTHKGE 126
+ + C C K + ++S LK H+ H G K + C E C F+ L H R H G
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA 73
Score = 46.1 bits (110), Expect = 8e-08
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 17 YQCG--ECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAH 67
Y+C C +F R L H H G+ ++C +C + F + H+ H++ H
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 30.3 bits (69), Expect = 0.058
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 81 AFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ + H C K+++ LK H+RTH GE
Sbjct: 2 SSGSSGPDLEKRRIHYCDY----PGCTKVYTKSSHLKAHLRTHTGE 43
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 79.9 bits (198), Expect = 4e-21
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 39 HYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTY--CGKAFVRASDLKRHIDAHL 96
+ CGK + + H+K H++ H G KPY C + CG F R+ +L RH H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 97 GVKKFACETCGKLFSSKHGLKYHVRTH 123
G + F C+ C + FS L H++ H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 67.2 bits (165), Expect = 4e-16
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC--PLCGKFFIQLCHMKDHIQAHGGLKPYV 74
CGK +T+ L AHL H G Y C CG F + + H + H G +P+
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 75 CTYCGKAFVRASDLKRHIDAHL 96
C C +AF R+ L H+ H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRHF 89
Score = 52.1 bits (126), Expect = 3e-10
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 67 HGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC--ETCGKLFSSKHGLKYHVRTHK 124
CGK + ++S LK H+ H G K + C + CG F+ L H R H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 125 GE 126
G
Sbjct: 62 GH 63
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 79.0 bits (196), Expect = 1e-20
Identities = 29/88 (32%), Positives = 45/88 (51%)
Query: 39 HYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGV 98
S +KC +CGK F + +K H++ H G+KPY C C A +S L +H+ H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ F C+ C + L H+R+H G+
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 78.6 bits (195), Expect = 1e-20
Identities = 26/87 (29%), Positives = 39/87 (44%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
++C CGK F+RK L H+ H G YKC C + H++ H +P+ C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 77 YCGKAFVRASDLKRHIDAHLGVKKFAC 103
C A +S L H+ +H G +
Sbjct: 69 ICPYASRNSSQLTVHLRSHTGDSGPSS 95
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 78.6 bits (195), Expect = 2e-20
Identities = 27/96 (28%), Positives = 37/96 (38%)
Query: 31 SLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKR 90
+ + C CG+ F + ++ H + H +PY C C KAF R L+
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63
Query: 91 HIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
H H K F C+ CGK F L H H
Sbjct: 64 HRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQT 99
Score = 76.3 bits (189), Expect = 2e-19
Identities = 27/89 (30%), Positives = 41/89 (46%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ C CG+ FT+ ++L H H Y C +C K F + H++DH H KP+ C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 77 YCGKAFVRASDLKRHIDAHLGVKKFACET 105
CGK F ++ L H H+ +
Sbjct: 78 ECGKGFCQSRTLAVHKTLHMQTSSPTAAS 106
Score = 37.4 bits (88), Expect = 2e-04
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 86 SDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
S K+F C+ CG+ F+ + L H RTH E
Sbjct: 3 SGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDE 43
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 75.5 bits (187), Expect = 2e-19
Identities = 33/81 (40%), Positives = 43/81 (53%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACE 104
+ C +CGK F + + H+ H +PY C YCGK F + SD+K+H H G K C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 105 TCGKLFSSKHGLKYHVRTHKG 125
CGK FS L H R H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 75.5 bits (187), Expect = 2e-19
Identities = 35/82 (42%), Positives = 45/82 (54%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVC 75
++ C CGK F R +L+ HL +H + Y C CGK F Q MK H H G KP+ C
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 76 TYCGKAFVRASDLKRHIDAHLG 97
CGKAF ++S+L H H G
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 52.0 bits (126), Expect = 3e-10
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 73 YVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ C CGK+F R+S L H+ H + + C+ CGK F K +K H H GE
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGE 55
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 75.2 bits (186), Expect = 4e-19
Identities = 32/78 (41%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGG--LKPYV 74
C CGK F + LN H H G Y CP+CG F + M H+++H G KPY+
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 75 CTYCGKAFVRASDLKRHI 92
C CGK F R L HI
Sbjct: 68 CQSCGKGFSRPDHLNGHI 85
Score = 74.1 bits (183), Expect = 9e-19
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 39 HYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLG- 97
GSS C +CGK F + H+ H +H G KPY C CG F R + H+ +H G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 98 -VKKFACETCGKLFSSKHGLKYHV-RTHKGE 126
K + C++CGK FS L H+ + H G
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVHSGP 92
Score = 66.7 bits (164), Expect = 6e-16
Identities = 23/64 (35%), Positives = 29/64 (45%)
Query: 66 AHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKG 125
G C CGK F L RH +H G K ++C CG F K + YHVR+H G
Sbjct: 1 GSSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 60
Query: 126 ECKR 129
+
Sbjct: 61 SVGK 64
Score = 30.5 bits (70), Expect = 0.044
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 17 YQCGECGKQFTRKFSLNAHLH 37
Y C CGK F+R LN H+
Sbjct: 66 YICQSCGKGFSRPDHLNGHIK 86
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 67.9 bits (167), Expect = 2e-16
Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Query: 31 SLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGG----LKPYVCTYCGKAFVRAS 86
S + H G Y C C K F Q + H + + +VC+ CGK F R +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 87 DLKRHIDAHLGVKKFACETCGKLF 110
+ RH D G E G
Sbjct: 62 TMARHADNCAGPDGVEGENSGPSS 85
Score = 66.8 bits (164), Expect = 6e-16
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSN----YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
Y C C K F +K L+ H ++ + + C CGK F + M H G
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG 75
Query: 73 YVCTYCGKAF 82
G +
Sbjct: 76 VEGENSGPSS 85
Score = 59.1 bits (144), Expect = 6e-13
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 59 HMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLG----VKKFACETCGKLFSSKH 114
+ H G KPY C++C K F + L H + F C CGK F+ ++
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 115 GLKYHVRTHKGE 126
+ H G
Sbjct: 62 TMARHADNCAGP 73
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 67.2 bits (165), Expect = 3e-16
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 59 HMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLG--VKKFACETCGKLFSSKHGL 116
+ H G KPY C C F ++ +K HI V KF C C + + K L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 117 KYHVRT-HKGE 126
H+R H
Sbjct: 62 GVHLRKQHSYS 72
Score = 57.9 bits (141), Expect = 1e-12
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSN--YKCPLCGKFFIQLCHMKDHIQ-AHGGLKPY 73
Y+C C +FT+ ++ H+ + + + CP C + + H++ H P
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 42.5 bits (101), Expect = 1e-06
Identities = 9/42 (21%), Positives = 13/42 (30%)
Query: 88 LKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGECKR 129
H G K + C C F+ +K H+ E
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVA 44
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 65.7 bits (161), Expect = 8e-16
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 67 HGGLKPYVCTYCGKAFVRASDLKRH--IDAHLGVKKFACETCGKLFSSKHGLKYHVRTHK 124
G Y C C + + S+ RH VK + C C K F+ K + HV+
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Query: 125 G 125
Sbjct: 65 K 65
Score = 61.0 bits (149), Expect = 5e-14
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 39 HYGSSNYKCPLCGKFFIQLCHMKDH--IQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHL 96
G Y+C +C + + + + H +K Y C +C K F R ++ H+
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Query: 97 GV 98
+
Sbjct: 65 KI 66
Score = 52.6 bits (127), Expect = 1e-10
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 17 YQCGECGKQFTRKFSLNAHL--HVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGL 70
Y+C C + +T + H Y CP C K F + +M H++ +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 65.3 bits (160), Expect = 2e-15
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 45 YKCPL--CGKFFIQLCHMKDHIQAHGGLKPYVCTY--CGKAFVRASDLKRHIDAHLGVKK 100
Y C CGK F + +K H +H PY C + C K F S LKRH H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 101 FACETCGKLFS-SKHGLKYHVRTH 123
++C + LK+ H
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVAECH 85
Score = 53.4 bits (129), Expect = 9e-11
Identities = 18/76 (23%), Positives = 25/76 (32%), Gaps = 2/76 (2%)
Query: 19 CGECGKQFTRKFSLNAHLHVHYGSSNYKC--PLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
CGK F + L H H Y+C C K F +K H + H G
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDD 65
Query: 77 YCGKAFVRASDLKRHI 92
C + +H+
Sbjct: 66 SCSFVGKTWTLYLKHV 81
Score = 49.5 bits (119), Expect = 2e-09
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 73 YVCTY--CGKAFVRASDLKRHIDAHLGVKKFAC--ETCGKLFSSKHGLKYHVRTHKGE 126
YVC + CGKAF + + LK H +H + C E C K FS LK H + H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 59
Score = 34.5 bits (80), Expect = 0.001
Identities = 13/51 (25%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 17 YQCGE--CGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQ 65
Y+C C K+F+ L H VH G K C H+
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVA 82
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 62.9 bits (154), Expect = 1e-14
Identities = 24/68 (35%), Positives = 28/68 (41%)
Query: 59 HMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKY 118
H H KPY C C +F +L H H G K + C CG F+ LK
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 119 HVRTHKGE 126
H R H GE
Sbjct: 64 HTRIHSGE 71
Score = 57.5 bits (140), Expect = 2e-12
Identities = 24/69 (34%), Positives = 31/69 (44%)
Query: 31 SLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKR 90
+ H H+ + YKC C F ++ H H G KPY C CG F R ++LK
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 91 HIDAHLGVK 99
H H G K
Sbjct: 64 HTRIHSGEK 72
Score = 55.2 bits (134), Expect = 1e-11
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPY 73
Y+C C F K +L +H VH G Y+C +CG F + ++K H + H G KPY
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 37.4 bits (88), Expect = 9e-05
Identities = 11/41 (26%), Positives = 13/41 (31%)
Query: 86 SDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
H K + C+ C F K L H H GE
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGE 43
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 63.0 bits (154), Expect = 1e-14
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 39 HYGSSNYKCPL--CGKFFIQLCHMKDHI-QAHGGLKPYVCTY--CGKAFVRASDLKRHID 93
GSS C CG+ F ++ H H K + C CGK+F LK H+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 94 AHLGVKKFACETCGKLF 110
H + + CE G
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 59.9 bits (146), Expect = 2e-13
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 17 YQC--GECGKQFTRKFSLNAHLHV-HYGSSNYKCP--LCGKFFIQLCHMKDHIQAHGGLK 71
C CG+ F+ + LN H H ++ CP CGK F H+K+H++ H +
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 72 PYVCTYCGKAF 82
Y+C + G +
Sbjct: 68 DYICEFSGPSS 78
Score = 59.9 bits (146), Expect = 3e-13
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 66 AHGGLKPYVCTY--CGKAFVRASDLKRHI-DAHLGVKKFACE--TCGKLFSSKHGLKYHV 120
G C + CG+ F L H H+ K F+C CGK F+ K LK H+
Sbjct: 1 GSSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60
Query: 121 RTHKGE 126
+ H
Sbjct: 61 KLHSDT 66
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 61.9 bits (151), Expect = 3e-14
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 59 HMKDHIQAHGGLKPYVCTY--CGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGL 116
++ +++ ++PY C C + F R+ +L RHI H G K F C C + FS L
Sbjct: 8 NLLNYV--VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHL 65
Query: 117 KYHVRTH 123
H+RTH
Sbjct: 66 TTHIRTH 72
Score = 50.4 bits (121), Expect = 8e-10
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 33 NAHLHVHYGSSNYKCPL--CGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKR 90
N +V Y CP+ C + F + + HI+ H G KP+ C C + F R+ L
Sbjct: 8 NLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT 67
Query: 91 HIDAH 95
HI H
Sbjct: 68 HIRTH 72
Score = 45.4 bits (108), Expect = 7e-08
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 17 YQCG--ECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAH 67
Y C C ++F+R L H+ +H G ++C +C + F + H+ HI+ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 30.7 bits (70), Expect = 0.031
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 84 RASDLKRHIDAHLGVKKFAC--ETCGKLFSSKHGLKYHVRTHKGE 126
++L ++ ++ +AC E+C + FS L H+R H G+
Sbjct: 5 PMNNLLNYV--VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQ 47
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 61.0 bits (149), Expect = 7e-14
Identities = 12/60 (20%), Positives = 20/60 (33%)
Query: 67 HGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
P C+ C + + L+ H H + F C C L H++ G+
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
Score = 55.2 bits (134), Expect = 1e-11
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 38 VHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLG 97
KC C ++ H + H +P+ C YC + S+L +H+ G
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Query: 98 VKKFACETCG 107
+ + G
Sbjct: 63 DM--SGPSSG 70
Score = 54.0 bits (131), Expect = 3e-11
Identities = 13/57 (22%), Positives = 22/57 (38%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPY 73
+C EC + K +L H +H +KC C Q ++ H++ G
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG 66
Score = 32.5 bits (75), Expect = 0.005
Identities = 5/32 (15%), Positives = 13/32 (40%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKCP 48
++C C + +L+ H+ +G +
Sbjct: 38 FKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 60.9 bits (148), Expect = 8e-14
Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 67 HGGLKPYVCTYCGKAFVRASDLKRHIDAH---LGVKKFACETCGKLFSSKHGLKYHVRTH 123
G C CG + + L H H + +F CE CGK F + H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 124 KGECK 128
Sbjct: 62 HPALL 66
Score = 58.2 bits (141), Expect = 9e-13
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAH---GGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKF 101
+C +CG Q + H + H + C +CGK F + + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 102 ACETCGK 108
A +
Sbjct: 68 APQESSG 74
Score = 35.8 bits (83), Expect = 3e-04
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGK 52
+ C CGK+F + S+ AH + +
Sbjct: 39 FPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSG 74
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 60.6 bits (148), Expect = 1e-13
Identities = 29/60 (48%), Positives = 32/60 (53%)
Query: 67 HGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
H G KPY C CGKAF R+S L +H H G K + C CGK FS GL H R H
Sbjct: 9 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Score = 55.2 bits (134), Expect = 1e-11
Identities = 24/71 (33%), Positives = 30/71 (42%)
Query: 32 LNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRH 91
+ +H G Y C CGK F + + H + H G KPY C CGKAF + S L H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 92 IDAHLGVKKFA 102
H
Sbjct: 62 QRIHTSGPSSG 72
Score = 53.6 bits (130), Expect = 6e-11
Identities = 23/57 (40%), Positives = 27/57 (47%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPY 73
Y C ECGK F+R L H VH G YKC CGK F Q + +H + H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 33.6 bits (78), Expect = 0.003
Identities = 15/39 (38%), Positives = 16/39 (41%)
Query: 88 LKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
H G K + C CGK FS L H R H GE
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE 40
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 60.5 bits (148), Expect = 1e-13
Identities = 23/68 (33%), Positives = 30/68 (44%)
Query: 59 HMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKY 118
+ Y C CGK+F +SDL +H H G K + C+ CGK F + L
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 119 HVRTHKGE 126
H R H G
Sbjct: 65 HHRVHTGS 72
Score = 54.4 bits (132), Expect = 3e-11
Identities = 25/69 (36%), Positives = 29/69 (42%)
Query: 31 SLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKR 90
S YKC CGK F + H + H G KPY C CGKAF++ S L
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 91 HIDAHLGVK 99
H H G
Sbjct: 65 HHRVHTGSG 73
Score = 53.6 bits (130), Expect = 5e-11
Identities = 25/57 (43%), Positives = 30/57 (52%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPY 73
Y+C ECGK F+ L+ H H G YKC CGK FIQ H+ H + H G P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 37.0 bits (87), Expect = 1e-04
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 86 SDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
R +++ C+ CGK FS L H RTH GE
Sbjct: 4 GSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE 44
Score = 31.3 bits (72), Expect = 0.020
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYK 46
Y+C ECGK F ++ L H VH GS
Sbjct: 47 YKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 59.0 bits (144), Expect = 3e-13
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHV-RTHKGEC 127
+ +VC C +AF R LKRH +H K + C C + F+ + L H + H G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 55.6 bits (135), Expect = 7e-12
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRH 91
+ C +C + F + H+K H ++H KPY C C +AF R L RH
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 46.7 bits (112), Expect = 2e-08
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQ 65
+ C C + F R+ L H H Y C LC + F + + H Q
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ 51
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 54.3 bits (131), Expect = 3e-11
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 59 HMKDHIQAHGGLKPYVCTY--CGKAFVRASDLKRHIDAHLGVKKFAC--ETCGKLFSSKH 114
++ ++C++ CGK + ++S LK H H G K F+C + C + F+
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSD 63
Query: 115 GLKYHVRTH 123
L H RTH
Sbjct: 64 ELSRHRRTH 72
Score = 52.4 bits (126), Expect = 1e-10
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 31 SLNAHLHVHYGSSNYKC--PLCGKFFIQLCHMKDHIQAHGGLKPYVCTY--CGKAFVRAS 86
+ ++ C P CGK + + H+K H + H G KP+ C++ C + F R+
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSD 63
Query: 87 DLKRHIDAH 95
+L RH H
Sbjct: 64 ELSRHRRTH 72
Score = 32.4 bits (74), Expect = 0.006
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 85 ASDLKRHIDAHLGVKKFAC--ETCGKLFSSKHGLKYHVRTHKGE 126
+S ++ C CGK + LK H RTH GE
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGE 45
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 52.6 bits (127), Expect = 8e-11
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDA-HLGVKKFACETCGKLFSS 112
+ KPY+C CGK F R L HI H + C+ SS
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 47.6 bits (114), Expect = 7e-09
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQA-HGGLKPYVCTYCGKAF 82
Y C CGK F + H+ HI+ H +P+ C
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 42.6 bits (101), Expect = 6e-07
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 17 YQCGECGKQFTRKFSLNAHLH-VHYGSSNYKCPLCGKFF 54
Y C CGK F+R LN H+ VH +KC +
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 31.0 bits (71), Expect = 0.014
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 95 HLGVKKFACETCGKLFSSKHGLKYHV-RTHKGE 126
K + C++CGK FS L H+ + H E
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSE 39
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 50.9 bits (121), Expect = 4e-10
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 73 YVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
Y+C CG + S LK+HI H V+ + C C F +K L H+++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 49.3 bits (117), Expect = 2e-09
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKK 100
Y C CG + +K HI+ H ++PY CTYC +F +L +H+ + KK
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 48.9 bits (116), Expect = 3e-09
Identities = 14/55 (25%), Positives = 22/55 (40%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLK 71
Y C ECG + + L H+ H Y C C F ++ H+++ K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 27.0 bits (59), Expect = 0.60
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 100 KFACETCGKLFSSKHGLKYHVRTHKGE 126
K+ CE CG LK H+RTH
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDV 27
Score = 26.2 bits (57), Expect = 1.0
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 12 TTTSAYQCGECGKQFTRKFSLNAHLHVHYG 41
T Y C C F K +L H+
Sbjct: 25 TDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 52.1 bits (124), Expect = 7e-10
Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 5/99 (5%)
Query: 31 SLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHG-----GLKPYVCTYCGKAFVRA 85
S + + G+S ++C C + L + H+ G + + R
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 86 SDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHK 124
L K C CG F S L H+ K
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 50.5 bits (120), Expect = 2e-09
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 5/85 (5%)
Query: 12 TTTSAYQCGECGKQFTRKFSLNAHLHV--HYGSSNYKCPLCG---KFFIQLCHMKDHIQA 66
T S ++C +C + L H++ HY N++ + + +
Sbjct: 15 TGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGK 74
Query: 67 HGGLKPYVCTYCGKAFVRASDLKRH 91
K C YCG +F DL H
Sbjct: 75 EDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 34.4 bits (78), Expect = 0.002
Identities = 11/56 (19%), Positives = 13/56 (23%)
Query: 12 TTTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAH 67
RK SL KC CG F L + H+
Sbjct: 48 DNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKT 103
Score = 31.7 bits (71), Expect = 0.025
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 84 RASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHK 124
S K + G KF C+ C + + L H+
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETG 43
Score = 24.7 bits (53), Expect = 7.0
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 2 REIRPRDPLATTTSAYQCGECGKQFTRKFSLNAHL--HVHYGSSNYK 46
R + + +C CG F L+ H+ HY +
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 48.1 bits (115), Expect = 4e-09
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 63 HIQAHGGLKPYVCTY--CGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G KP+ CT+ CG F R+ +L RH +H GVK +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS 47
Score = 32.7 bits (75), Expect = 0.003
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 34 AHLHVHYGSSNYKC--PLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G + C P CG F + + H ++H G+KP +
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 26.5 bits (59), Expect = 0.72
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 17 YQCGE--CGKQFTRKFSLNAHLHVHYGSSNYKC 47
+ C CG +F+R L+ H H G
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 49.2 bits (117), Expect = 5e-09
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 9/69 (13%)
Query: 67 HGGLKPYVCTYCGKAFVRASDLKRHI-DAHLGVKKFA--------CETCGKLFSSKHGLK 117
C + F +L H+ H+G + C GK F +K+ L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 118 YHVRTHKGE 126
H+R H GE
Sbjct: 80 NHIRVHTGE 88
Score = 47.7 bits (113), Expect = 2e-08
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 9/74 (12%)
Query: 12 TTTSAYQCGECGKQFTRKFSLNAHLH-VHYGSSNYK--------CPLCGKFFIQLCHMKD 62
+ C + F+ L H+ H G CP GK F + +
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 63 HIQAHGGLKPYVCT 76
HI+ H G K +
Sbjct: 81 HIRVHTGEKSGPSS 94
Score = 40.0 bits (93), Expect = 2e-05
Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 9/75 (12%)
Query: 38 VHYGSSNYKCPLCGKFFIQLCHMKDHIQ-AHGGLKPYV--------CTYCGKAFVRASDL 88
+ + C + F + + H+ H G C GK+F L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 89 KRHIDAHLGVKKFAC 103
HI H G K
Sbjct: 79 VNHIRVHTGEKSGPS 93
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 48.5 bits (115), Expect = 6e-09
Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 7/68 (10%)
Query: 59 HMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKY 118
+ H G + C+ CG F+R S L R K CE C K + L
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNK 57
Query: 119 HVRTHKGE 126
G+
Sbjct: 58 DEGNESGK 65
Score = 43.9 bits (103), Expect = 3e-07
Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 7/72 (9%)
Query: 31 SLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKR 90
S +H G + KC CG FI+ + K +C C K + + L +
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNK 57
Query: 91 HIDAHLGVKKFA 102
G K
Sbjct: 58 DEGNESGKKTSG 69
Score = 36.2 bits (83), Expect = 3e-04
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 7/62 (11%)
Query: 12 TTTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLK 71
+ +C +CG F R+ +L+ C C K Q + G K
Sbjct: 14 LGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKDEGNESGKK 66
Query: 72 PY 73
Sbjct: 67 TS 68
Score = 27.7 bits (61), Expect = 0.39
Identities = 9/46 (19%), Positives = 17/46 (36%)
Query: 84 RASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGECKR 129
+ + HLG + C CG +F + L +C++
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKTPMCEKCRK 47
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 46.4 bits (109), Expect = 7e-08
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 3/81 (3%)
Query: 11 ATTTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGL 70
YQC C + + +H + + CP C F ++H ++
Sbjct: 11 VENKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEH-ESKCEY 67
Query: 71 KPYVCTYCGKAFVRASDLKRH 91
K C C + F + + RH
Sbjct: 68 KKLTCLECMRTFKSSFSIWRH 88
Score = 41.0 bits (95), Expect = 7e-06
Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 3/82 (3%)
Query: 41 GSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKK 100
Y+C LC L H + VC YC F + H ++ KK
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEH-ESKCEYKK 69
Query: 101 FACETCGKLFSSKHGLKYHVRT 122
C C + F S + H
Sbjct: 70 LTCLECMRTFKSSFSIWRHQVE 91
Score = 30.6 bits (68), Expect = 0.051
Identities = 9/66 (13%), Positives = 14/66 (21%), Gaps = 2/66 (3%)
Query: 61 KDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHV 120
+ Y C C + H C C F S + H
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHE 62
Query: 121 RTHKGE 126
+ +
Sbjct: 63 SKCEYK 68
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 45.7 bits (107), Expect = 2e-07
Identities = 19/106 (17%), Positives = 32/106 (30%), Gaps = 3/106 (2%)
Query: 22 CGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKA 81
++ R L + + + ++ + + +VC C
Sbjct: 25 TLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAI-SQFVCPLCLMP 83
Query: 82 FVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGEC 127
F + LK+HI K C C K F+S HV C
Sbjct: 84 FSSSVSLKQHIRYTEHTKV--CPVCKKEFTSTDSALDHVCKKHNIC 127
Score = 36.1 bits (82), Expect = 7e-04
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 11 ATTTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQ 65
+ S + C C F+ SL H+ + CP+C K F DH+
Sbjct: 69 SKAISQFVCPLCLMPFSSSVSLKQHIRYTEHT--KVCPVCKKEFTSTDSALDHVC 121
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 3e-07
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G +PY C CGK F R S L H+ H K +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSS 45
Score = 37.9 bits (89), Expect = 4e-05
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
G Y C CGK F + H+ +H++ H K +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 36.7 bits (86), Expect = 1e-04
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y C ECGK F R L HL H+ +
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 32.1 bits (74), Expect = 0.005
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 91 HIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G + + C CGK F L H++ H E
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFRE 38
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 41.7 bits (99), Expect = 1e-06
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 91 HIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K + CE CG F LK H+R H G
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGS 37
Score = 40.6 bits (96), Expect = 3e-06
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
+ GG KPY C CG F LK H+ H G
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSG 38
Score = 40.2 bits (95), Expect = 4e-06
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPY 73
G Y C +CG F L +K H++ H G P
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 32.9 bits (76), Expect = 0.002
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYG 41
Y C CG +F +L +HL +H G
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTG 36
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 2e-06
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G KP+ C CG F + L +H+ +H +
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
Score = 37.2 bits (87), Expect = 5e-05
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 91 HIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K F C+ CG FS L H+R+H+
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERT 38
Score = 34.1 bits (79), Expect = 0.001
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
+QC ECG F+ SL HL H +
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 32.9 bits (76), Expect = 0.003
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVC 75
+ G ++C CG F C + H+++H P
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 41.0 bits (97), Expect = 2e-06
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPY 73
G YKC CG F+Q+ H++ H+ H G P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 40.2 bits (95), Expect = 4e-06
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
+ GG KPY C CG FV+ + L+ H+ H G
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSG 38
Score = 38.7 bits (91), Expect = 1e-05
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 91 HIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K + CETCG F L+ HV H G
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGS 37
Score = 32.5 bits (75), Expect = 0.003
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYG 41
Y+C CG +F + L AH+ +H G
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTG 36
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 2e-06
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
+ G KPYVC YCGKAF +++L RH H G K
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 3e-04
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
G Y C CGK F + H + H G KP +
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.001
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y C CGK F L H +H G
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K + C+ CGK F L H R H GE
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGE 38
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 2e-06
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G KPY+C CGKAF S+L +H H K +
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45
Score = 36.0 bits (84), Expect = 2e-04
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G Y C CGK F ++ H + H KP +
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 34.4 bits (80), Expect = 7e-04
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y C ECGK FT + +L H +H
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 32.1 bits (74), Expect = 0.004
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 95 HLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G K + C CGK F+ + L H + H +
Sbjct: 7 GTGEKPYICAECGKAFTIRSNLIKHQKIHTKQ 38
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 40.6 bits (96), Expect = 3e-06
Identities = 15/44 (34%), Positives = 18/44 (40%)
Query: 62 DHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G KPY C CGK F+ DL H H G K +
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS 45
Score = 37.1 bits (87), Expect = 7e-05
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G YKC CGK FI + H H G KP +
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 4e-04
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C ECGK F + L H VH G
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 95 HLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G K + CE CGK F + L H H GE
Sbjct: 7 GTGEKPYKCEECGKGFICRRDLYTHHMVHTGE 38
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 40.2 bits (95), Expect = 4e-06
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ K + C CG+ F S L +H H G K +
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSS 45
Score = 34.1 bits (79), Expect = 0.001
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ K C CG+ F+ K L H R H GE
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGE 38
Score = 33.3 bits (77), Expect = 0.002
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
+QC ECG+ FT K LN H +H G
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 31.4 bits (72), Expect = 0.009
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ +++C CG+ F H+ H + H G KP +
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 5e-06
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G KP+ C CGK+F S L RH H K +
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSS 45
Score = 36.3 bits (85), Expect = 1e-04
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G +KC +CGK F + H H KP +
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 34.4 bits (80), Expect = 7e-04
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
++C CGK F + LN H VH
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 33.2 bits (77), Expect = 0.002
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 95 HLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G K F C+ CGK F + L H H E
Sbjct: 7 GTGEKPFKCDICGKSFCGRSRLNRHSMVHTAE 38
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 5e-06
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G KPY C CGKAF+ S L+ H H G K +
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS 45
Score = 36.4 bits (85), Expect = 1e-04
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G Y C CGK FI +++H + H G KP +
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 7e-04
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K + CE CGK F L+ H R H GE
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGE 38
Score = 34.4 bits (80), Expect = 7e-04
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y C ECGK F L H +H G
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 5e-06
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
+ G KP CT CGKAF S L H H+ K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 34.1 bits (79), Expect = 9e-04
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
+C ECGK F K L H H +
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 33.7 bits (78), Expect = 0.001
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K C CGK F K L H RTH +
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDD 38
Score = 33.3 bits (77), Expect = 0.002
Identities = 10/43 (23%), Positives = 14/43 (32%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G KC CGK F + H + H K +
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 40.3 bits (94), Expect = 5e-06
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETC 106
K C CGK F L RH +H G K ++
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 36.5 bits (84), Expect = 1e-04
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 39 HYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYC 78
C +CGK F + H+ H +H G KPY
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 32.6 bits (74), Expect = 0.004
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K+ ACE CGK+F + L H +H GE
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGE 38
Score = 30.3 bits (68), Expect = 0.030
Identities = 11/34 (32%), Positives = 12/34 (35%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLC 50
C CGK F + LN H H G Y
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 39.8 bits (94), Expect = 6e-06
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G + + C+ CGK F++AS+ +H H G K +
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS 45
Score = 34.8 bits (81), Expect = 5e-04
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+G ++C CGKFF+Q + H + H G KP +
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.004
Identities = 11/37 (29%), Positives = 13/37 (35%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G + C CGK F H R H GE
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGE 38
Score = 31.7 bits (73), Expect = 0.006
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
++C +CGK F + + H +H G
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 39.8 bits (94), Expect = 6e-06
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
+ G+KPYVC CGKAF S L H H G +
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 35.5 bits (83), Expect = 2e-04
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G+K + C CGK F SK L H RTH GE
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 34.0 bits (79), Expect = 0.001
Identities = 13/31 (41%), Positives = 13/31 (41%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y C ECGK F K L H H G S
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 33.2 bits (77), Expect = 0.002
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVC 75
+ G Y C CGK F ++ H + H G
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 7e-06
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
+ G K Y C CGK+F RA L +H H G K
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 36.0 bits (84), Expect = 2e-04
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G Y C CGK F + + H + H G KP +
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 34.4 bits (80), Expect = 6e-04
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y C ECGK F+R L H +H G
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 91 HIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K + C+ CGK FS L H R H GE
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGE 38
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 39.4 bits (93), Expect = 8e-06
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G+KPY C+ C K F S L H +H GVK +
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSS 45
Score = 36.4 bits (85), Expect = 1e-04
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ GVK + C C K FS K L H R+H G
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGV 38
Score = 34.8 bits (81), Expect = 5e-04
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G Y C C K F + H ++H G+KP +
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 34.0 bits (79), Expect = 9e-04
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y C +C K F+ K L H H G
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 8e-06
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACE 104
+ G KPY+C CGK+F++ S L RH H G K
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 37.1 bits (87), Expect = 7e-05
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G Y C CGK FIQ H+ H + H G KP +
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 7e-04
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y C ECGK F +K LN H +H G
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.005
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 95 HLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G K + C CGK F K L H R H GE
Sbjct: 7 GTGEKPYICNECGKSFIQKSHLNRHRRIHTGE 38
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 9e-06
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G KPY C CGKAFV ++ L +H+ H +
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
Score = 36.0 bits (84), Expect = 2e-04
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
G Y C +CGK F+ H+ H++ H +
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 34.0 bits (79), Expect = 0.001
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y C CGK F LN HL VH +
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 31.3 bits (72), Expect = 0.011
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K ++C CGK F L H+R H E
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 9e-06
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACE 104
+ G KPY C+ CGKAF R + L H H G +
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 36.3 bits (85), Expect = 1e-04
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
G YKC CGK F + H+ +H + H G +P +
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 34.4 bits (80), Expect = 6e-04
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C ECGK F R LN H +H G
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 32.5 bits (75), Expect = 0.003
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K + C CGK F L H R H G
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGY 38
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.5 bits (93), Expect = 9e-06
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G KPY C+ CGKAF S L H+ H G K +
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS 45
Score = 36.8 bits (86), Expect = 9e-05
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K + C CGK FSSK L H+RTH GE
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGE 38
Score = 36.4 bits (85), Expect = 1e-04
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G Y C CGK F ++ H++ H G KP +
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 34.1 bits (79), Expect = 8e-04
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y C ECGK F+ K L H+ H G
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 9e-06
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G + Y C+ CGKAF R S L H H G K +
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS 45
Score = 34.8 bits (81), Expect = 4e-04
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C ECGK F RK +L H +H G
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 5e-04
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
G +Y+C CGK F + + H + H G KP +
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.001
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G + + C CGK F+ K L H R H GE
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGE 38
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 1e-05
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G KPY C CGKAF +S L +H H G + +
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS 45
Score = 36.3 bits (85), Expect = 1e-04
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
G YKC +CGK F H+ H H G +P +
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 32.9 bits (76), Expect = 0.003
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C CGK F L H VH G
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 30.9 bits (71), Expect = 0.012
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K + C+ CGK F L H H GE
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGE 38
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 1e-05
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
+ G +PY+CT CGKAF S+L +H H G K
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 4e-04
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVC 75
+ G Y C +CGK F ++ H + H G KP
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 7e-04
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y C CGK FT + +L H +H G
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 32.8 bits (76), Expect = 0.003
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G + + C CGK F+ + L H + H GE
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGE 38
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 39.0 bits (92), Expect = 1e-05
Identities = 13/41 (31%), Positives = 15/41 (36%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
+ G PY C CGK F R L H H G +
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 35.6 bits (83), Expect = 2e-04
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C ECGK F+RK L +H H G S
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 34.0 bits (79), Expect = 9e-04
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 91 HIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G + C CGK+FS K L H +TH G+
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQ 38
Score = 29.0 bits (66), Expect = 0.060
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVC 75
+ G + Y+C CGK F + + H + H G
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 39.1 bits (92), Expect = 1e-05
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCG 107
+ G KP+ C CGK F S H +H G K G
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 37.5 bits (88), Expect = 4e-05
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCG 79
+ G +KC CGK F H ++H G KP + G
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 34.1 bits (79), Expect = 0.001
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
++C ECGK F +H H G
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 34.1 bits (79), Expect = 0.001
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 95 HLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G K F CE CGK F + H R+H GE
Sbjct: 7 GSGEKPFKCEECGKGFYTNSQCYSHQRSHSGE 38
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 39.1 bits (92), Expect = 1e-05
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G K + C CGK F S L+ H H+G K +
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSS 45
Score = 34.1 bits (79), Expect = 9e-04
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 91 HIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K C+ CGK F L+ H R H GE
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGE 38
Score = 31.0 bits (71), Expect = 0.012
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
+ C ECGK F +L H VH G
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 29.1 bits (66), Expect = 0.059
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
G ++ C CGK F + ++ H + H G K +
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 39.1 bits (92), Expect = 1e-05
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACE 104
+ G KPY C CGK+F AS L +H H G K
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 36.4 bits (85), Expect = 1e-04
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G Y C CGK F + H + H G KP +
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 34.5 bits (80), Expect = 6e-04
Identities = 12/31 (38%), Positives = 12/31 (38%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y C ECGK F L H VH G
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 34.5 bits (80), Expect = 6e-04
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K + C+ CGK F L H R H GE
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGE 38
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 39.0 bits (92), Expect = 1e-05
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G KP+ C CGK+F +S L H H G K +
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS 45
Score = 35.6 bits (83), Expect = 2e-04
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
G ++C CGK F + H + H G KP +
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 6e-04
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
++C ECGK F+ L H +H G
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 15/37 (40%), Positives = 16/37 (43%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K F C CGK FS L H R H GE
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGE 38
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 39.0 bits (92), Expect = 1e-05
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 67 HGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
G PY C+ CGKAF R L H H G +
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 36.3 bits (85), Expect = 1e-04
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C ECGK F RK L +H H G S
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 34.0 bits (79), Expect = 0.001
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 95 HLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G + C CGK F+ K L H RTH GE
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 32.5 bits (75), Expect = 0.003
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 39 HYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVC 75
G + Y+C CGK F + + H + H G
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 38.7 bits (91), Expect = 1e-05
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFA 102
+ GG KPY C CGKAF + L HI H G +
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 37.2 bits (87), Expect = 6e-05
Identities = 13/40 (32%), Positives = 16/40 (40%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPY 73
G Y+C CGK F Q + HI+ H G P
Sbjct: 1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 36.0 bits (84), Expect = 1e-04
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 91 HIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K + C+ CGK FS K L H+R H G
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGS 37
Score = 32.2 bits (74), Expect = 0.004
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNY 45
Y+C +CGK F++K SL H+ VH GS
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.1 bits (92), Expect = 1e-05
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 62 DHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
+ G KPY C CGK + R DL H H G K
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 36.7 bits (86), Expect = 1e-04
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G YKC CGK + + + H + H G K +
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 36.4 bits (85), Expect = 1e-04
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C ECGK + R+ L+ H VH G
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 95 HLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G K + C CGK + + L +H R H GE
Sbjct: 7 GSGEKPYKCVECGKGYKRRLDLDFHQRVHTGE 38
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 1e-05
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 62 DHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G KPY C CGKAF S+L H H G K +
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS 45
Score = 35.6 bits (83), Expect = 3e-04
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVC 75
+ G Y+C CGK F ++ H + H G KP
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 3e-04
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C ECGK FT + +L H +H G
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.005
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 95 HLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G K + C CGK F+ + L H + H GE
Sbjct: 7 GTGEKPYRCAECGKAFTDRSNLFTHQKIHTGE 38
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 38.7 bits (91), Expect = 1e-05
Identities = 13/40 (32%), Positives = 16/40 (40%)
Query: 66 AHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
G KP+ C+ C KAF S L H H K +
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS 43
Score = 36.4 bits (85), Expect = 1e-04
Identities = 15/33 (45%), Positives = 16/33 (48%)
Query: 94 AHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G K F C C K FSSK L H +TH E
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEE 36
Score = 35.2 bits (82), Expect = 3e-04
Identities = 8/31 (25%), Positives = 10/31 (32%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
+ C C K F+ K L H H
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 33.3 bits (77), Expect = 0.002
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 38 VHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
G + C C K F ++ H Q H KP +
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 1e-05
Identities = 17/43 (39%), Positives = 19/43 (44%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G KPY C CGK F R S L RH H G K +
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS 45
Score = 35.1 bits (82), Expect = 3e-04
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G YKC CGK F + H+ H H G KP +
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 33.2 bits (77), Expect = 0.002
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C ECGK F R L H +H G
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.005
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K + C CGK+F L H H GE
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGE 38
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 1e-05
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACE 104
+ G KPY C CGKAF S +H H G +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 36.0 bits (84), Expect = 2e-04
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G YKC CGK F H + H G +P +
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 34.5 bits (80), Expect = 7e-04
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C ECGK F S H +H G
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 32.6 bits (75), Expect = 0.003
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 91 HIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K + C CGK F H R H G+
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQ 38
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 1e-05
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G KP+ C CGKAF + L H+ H G K +
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS 45
Score = 36.3 bits (85), Expect = 1e-04
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G +KC CGK F Q H+ H++ H G KP +
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 7e-04
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
++C ECGK F + L +HL +H G
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.002
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K F C+ CGK F L H+R H GE
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGE 38
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 38.7 bits (91), Expect = 1e-05
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G K Y C CGK F R S L +H H G K +
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
Score = 35.6 bits (83), Expect = 3e-04
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
G YKC CGK F + + H + H G KP +
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.001
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C ECGK F+R L+ H +H G
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.001
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K++ C CGK+FS L H + H GE
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGE 38
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 1e-05
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G +P+ C CGK F R S L H+ H K +
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS 45
Score = 36.4 bits (85), Expect = 1e-04
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
G +KC CGK F + H+ H++ H K +
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 35.2 bits (82), Expect = 4e-04
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
++C ECGK F R+ L HL +H +
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 32.9 bits (76), Expect = 0.002
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G + F C CGK F + L H+R H E
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSRE 38
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 1e-05
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACE 104
+ G K + CT CGKAF R S L H H G K
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 2e-04
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
++C ECGK FTRK +L+ H +H G
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 4e-04
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G +++C CGK F + + H + H G KP +
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.002
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 95 HLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G K F C CGK F+ K L H + H GE
Sbjct: 7 GTGGKHFECTECGKAFTRKSTLSMHQKIHTGE 38
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 2e-05
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACE 104
+ G KPY C C KAF + + L +H H G K
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 37.5 bits (88), Expect = 5e-05
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G Y+C +C K F Q H+ H + H G KP +
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 6e-04
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K + C+ C K F+ K L H +TH GE
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGE 38
Score = 34.0 bits (79), Expect = 0.001
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C C K FT+K L H H G
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 2e-05
Identities = 17/43 (39%), Positives = 20/43 (46%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G KPY C CGKAF + S L RH H G K +
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS 45
Score = 36.0 bits (84), Expect = 2e-04
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G Y+C CGK F Q + H + H G KP +
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.001
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
YQC ECGK F++ L H VH G
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.003
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 95 HLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G K + C CGK FS L H R H GE
Sbjct: 7 GTGGKPYQCNECGKAFSQTSKLARHQRVHTGE 38
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 38.7 bits (91), Expect = 2e-05
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
+ G KPY C CGKAF+ S L H H GV +
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 35.2 bits (82), Expect = 3e-04
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K + C CGK F K L H RTH G
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGV 38
Score = 32.5 bits (75), Expect = 0.003
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVC 75
+ G Y+C CGK FI + H + H G+
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 32.1 bits (74), Expect = 0.004
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C ECGK F K L H H G S
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 2e-05
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G KPY C CGK F + S L H H GVK +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSS 45
Score = 37.1 bits (87), Expect = 7e-05
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G YKC CGK F Q H+ +H + H G+KP +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 34.0 bits (79), Expect = 9e-04
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C ECGK FT+ L H +H G
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K + C CGK+F+ L H R H G
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGV 38
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 2e-05
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
+ G KPY C+ CGK+F + L +H H K
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 35.6 bits (83), Expect = 2e-04
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
YQC ECGK F+ + L H H
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 35.6 bits (83), Expect = 3e-04
Identities = 11/43 (25%), Positives = 15/43 (34%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G Y+C CGK F + H H KP +
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 33.3 bits (77), Expect = 0.002
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 91 HIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K + C CGK FS + L H TH E
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTRE 38
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 2e-05
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACE 104
+ G KPY C C KAF + L +H H G K
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 35.2 bits (82), Expect = 3e-04
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
G Y+C +C K F + H + H G KP +
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.001
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C C K F+ SL H VH G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.002
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 91 HIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K + C+ C K FS L H R H GE
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGE 38
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 2e-05
Identities = 17/43 (39%), Positives = 20/43 (46%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G KPY C CGKAF + S L RH H G K +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSS 45
Score = 36.0 bits (84), Expect = 2e-04
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
G YKC CGK F Q + H + H G KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.001
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C ECGK F++ L H +H G
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.001
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K + C CGK FS L H R H GE
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGE 38
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 38.3 bits (90), Expect = 2e-05
Identities = 15/44 (34%), Positives = 18/44 (40%)
Query: 62 DHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G KP+ C CGK F R S L H H G K +
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSS 45
Score = 36.3 bits (85), Expect = 1e-04
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
++C ECGK F+R+ +LN H +H G
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 2e-04
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G +KC CGK F + + H + H G KP +
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 5e-04
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 95 HLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G K F C CGK FS + L H + H GE
Sbjct: 7 GTGEKPFKCVECGKGFSRRSALNVHHKLHTGE 38
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 38.3 bits (90), Expect = 2e-05
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
+ G +PY C CGKAF S L H +H G K
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 3e-04
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
G Y+C CGK F + H ++H G KP +
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 3e-04
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G + + C CGK F +K L H R+H GE
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGE 38
Score = 34.8 bits (81), Expect = 4e-04
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C ECGK F K SL H H G
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 2e-05
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 62 DHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G KP+ C CGK F + S L H H G K +
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS 45
Score = 37.5 bits (88), Expect = 4e-05
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
G ++C CGK F Q H+ H + H G KP +
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 3e-04
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
+QC ECGK+FT+ L++H VH G
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 7e-04
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K F CE CGK F+ L H R H GE
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGE 38
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 2e-05
Identities = 16/42 (38%), Positives = 17/42 (40%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACE 104
+ G KPY C CGK F S L RH H G K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 5e-04
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
G YKC CGK F ++ H + H G KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 8e-04
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C ECGK F L+ H +H G
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K + C CGK+F L H R H GE
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGE 38
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 2e-05
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACE 104
+ G KPY C C K F++ L +H H G +
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 36.4 bits (85), Expect = 1e-04
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVC 75
+ G Y+C C K FIQ+ H+ H + H G +
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 34.4 bits (80), Expect = 7e-04
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C EC K F + LN H VH G +
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 32.1 bits (74), Expect = 0.004
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K + C+ C K F L H R H GE
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGE 38
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 2e-05
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G KP+ C CGKAF L +H H G K +
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45
Score = 34.4 bits (80), Expect = 6e-04
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
+ C +CGK F+ LN H +H G
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 7e-04
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G + C CGK F + H + H G KP +
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.001
Identities = 16/36 (44%), Positives = 17/36 (47%)
Query: 91 HIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K F C CGK FS GL H R H GE
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGE 38
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.2 bits (90), Expect = 3e-05
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G KPY C CGK F + S L RH H G K +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS 45
Score = 36.3 bits (85), Expect = 1e-04
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G YKC CGK F Q H+ H H G KP +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 33.2 bits (77), Expect = 0.002
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K + C CGK+F+ L H H GE
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGE 38
Score = 33.2 bits (77), Expect = 0.002
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C ECGK FT+ L H +H G
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 3e-05
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G KPY C CGK F + S L RH H G K +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS 45
Score = 36.3 bits (85), Expect = 1e-04
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G YKC CGK F Q H+ H + H G KP +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 33.3 bits (77), Expect = 0.002
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C ECGK FT+ L H VH G
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 31.7 bits (73), Expect = 0.007
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 95 HLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G K + C CGK+F+ L H R H G
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARHRRVHTGG 38
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 3e-05
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACE 104
+ G KPY C CGK F + S L H H G K
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 36.4 bits (85), Expect = 1e-04
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G Y C CGK F Q + H + H G KP +
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 5e-04
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y C ECGK F++K L+AH H G
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 91 HIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K + C CGK FS K L H RTH GE
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGE 38
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.8 bits (89), Expect = 3e-05
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G KP+ C+ C KAF S+L H H G K +
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS 45
Score = 36.3 bits (85), Expect = 1e-04
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K F C C K F++K L H RTH GE
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGE 38
Score = 34.4 bits (80), Expect = 7e-04
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G ++C C K F ++ H + H G KP +
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 8e-04
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
++C EC K F K +L H H G
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 3e-05
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACE 104
+ G KPY C CGKAF S+L H H G K
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 3e-04
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G YKC CGK F ++ H H G KP +
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.001
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C ECGK F +L H +H G
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.008
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 91 HIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K + C CGK F + L H H GE
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGE 38
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 37.9 bits (89), Expect = 3e-05
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
+ G+ PY C+ C K+F L H H K
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 36.0 bits (84), Expect = 2e-04
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 91 HIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ GV + C C K FS K L H R H E
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTRE 38
Score = 35.6 bits (83), Expect = 2e-04
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G + YKC C K F + H + H KP +
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 35.6 bits (83), Expect = 2e-04
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C +C K F+ K L H +H
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 3e-05
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
+ G P++C+ CGK F ++L H H G +
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 36.3 bits (85), Expect = 1e-04
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G + + C CGK F ++ H + H G +P +
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 35.2 bits (82), Expect = 4e-04
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
+ C ECGK FT K +L H +H G
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 91 HIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G F C CGK+F+ K L H + H GE
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGE 38
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 37.9 bits (89), Expect = 3e-05
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
+ G K + C C F +AS L+ H + H+G K
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 36.4 bits (85), Expect = 1e-04
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
++C EC F++ SL H +VH G
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 35.6 bits (83), Expect = 3e-04
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G +KC C F Q ++ H H G KP +
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 34.4 bits (80), Expect = 6e-04
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 91 HIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ +G K + C C FS L+ H H GE
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGE 38
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 3e-05
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
+ G + Y C+ CGKAF++ S L H H G K
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 35.6 bits (83), Expect = 2e-04
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
G +Y+C CGK FIQ + H + H G KP +
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 34.8 bits (81), Expect = 4e-04
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C ECGK F +K +L+ H +H G
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 95 HLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G + + C CGK F K L H R H+GE
Sbjct: 7 GTGERHYECSECGKAFIQKSTLSMHQRIHRGE 38
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 37.9 bits (89), Expect = 3e-05
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
+ G KP+ CT+CGK+F +L H H G K
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 36.4 bits (85), Expect = 1e-04
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G ++C CGK F ++ H + H G K +
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 34.8 bits (81), Expect = 4e-04
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
++C CGK F K +L H +H G +
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 34.1 bits (79), Expect = 8e-04
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 95 HLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G K F C CGK F +K L H R H GE
Sbjct: 7 GTGQKPFECTHCGKSFRAKGNLVTHQRIHTGE 38
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 3e-05
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ KPY C CGK + R +L H H+G K +
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45
Score = 35.9 bits (84), Expect = 2e-04
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C +CGK + R+ +L+ H VH G
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 35.2 bits (82), Expect = 3e-04
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ YKC CGK + + ++ H + H G K +
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 33.2 bits (77), Expect = 0.002
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 91 HIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ K + CE CGK ++ + L H R H GE
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGE 38
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 3e-05
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G K Y C CGK F ++S L+ H H G K +
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS 45
Score = 37.9 bits (89), Expect = 3e-05
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
G YKC +CGK F Q H++ H + H G KP +
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 8e-04
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C CGK+F++ L H VH G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.002
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 95 HLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+G K + C+ CGK FS L+ H R H GE
Sbjct: 7 GMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGE 38
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 37.9 bits (89), Expect = 3e-05
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
+ G KPY C CGKAF + + L +H H G K
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 35.9 bits (84), Expect = 2e-04
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
G Y+C CGK F Q H+ H + H G KP +
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.001
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C ECGK F++ L H VH G
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.005
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K + C+ CGK FS L H R H GE
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGE 38
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 3e-05
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACE 104
+ G+KPY+C CGKAF S L H H G K
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 7e-04
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y C ECGK F+ SL H +H G
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 8e-04
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ GVK + C CGK FS L H H GE
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGE 38
Score = 33.6 bits (78), Expect = 0.001
Identities = 12/42 (28%), Positives = 14/42 (33%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVC 75
+ G Y C CGK F + H H G KP
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 3e-05
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G KPY C CGK F + S L RH H G K +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 35.9 bits (84), Expect = 2e-04
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G YKC CGK F Q H+ H H G KP +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.002
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C ECGK FT+ L H +H G
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.009
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 95 HLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G K + C CGK+F+ L H H GE
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARHRGIHTGE 38
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 3e-05
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACE 104
+ G KPY C CGK F + S L RH H G K
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 35.9 bits (84), Expect = 2e-04
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G YKC CGK F Q H+ H H G KP +
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 33.2 bits (77), Expect = 0.002
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C ECGK FT+ L H +H G
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.011
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 95 HLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G K + C CGK+F+ L H H GE
Sbjct: 7 GTGKKPYKCNECGKVFTQNSHLARHRGIHTGE 38
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 3e-05
Identities = 16/42 (38%), Positives = 17/42 (40%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACE 104
+ G KPY C CGKAF S L H H G K
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 34.8 bits (81), Expect = 4e-04
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C +CGK F+ + SL H +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 34.4 bits (80), Expect = 7e-04
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
G Y+C CGK F + H H G KP +
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 33.7 bits (78), Expect = 0.001
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K + C CGK FS + L H H G+
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGK 38
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 4e-05
Identities = 15/41 (36%), Positives = 16/41 (39%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
+ G PY C CGKAF R L H H G K
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 35.2 bits (82), Expect = 3e-04
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C ECGK F+RK+ L +H H G
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 35.2 bits (82), Expect = 3e-04
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
G + Y+C CGK F + + H + H G KP +
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 34.8 bits (81), Expect = 5e-04
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G + C CGK FS K+ L H RTH GE
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGE 38
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 4e-05
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G KPY C+ CGK+F++ S L H H G +
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS 45
Score = 35.6 bits (83), Expect = 3e-04
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C +CGK F +K L+ H +H G +
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 35.2 bits (82), Expect = 3e-04
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVC 75
+ G Y+C CGK FI+ + H + H G P
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 34.1 bits (79), Expect = 0.001
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 95 HLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G K + C CGK F K L H R H GE
Sbjct: 7 GTGEKPYECSDCGKSFIKKSQLHVHQRIHTGE 38
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 4e-05
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
+ G KPY C+ CGKAF R S L H +H G +
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 37.1 bits (87), Expect = 5e-05
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C +CGK FTRK L+ H H G +
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 36.7 bits (86), Expect = 8e-05
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
G YKC CGK F + + H Q+H G + +
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 35.9 bits (84), Expect = 2e-04
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K + C CGK F+ K GL H ++H GE
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 4e-05
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G KPY C+ CGKAF L H H G K +
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
Score = 34.8 bits (81), Expect = 4e-04
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C CGK F+ + SL+ H +H G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 34.8 bits (81), Expect = 5e-04
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
G Y+C +CGK F + H + H G KP +
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 34.0 bits (79), Expect = 9e-04
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K + C CGK FS + L H R H G+
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGK 38
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 4e-05
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACET 105
+ G KPY C+ CGK+F + S L H H G K +
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
Score = 35.6 bits (83), Expect = 2e-04
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
G Y+C +CGK F + + H Q H G KP +
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 3e-04
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C CGK FT+K L+ H +H G
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 7e-04
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K + C CGK F+ K L H + H GE
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGE 38
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 4e-05
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
+ G KP+ C CGK+F S L H H G
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 35.2 bits (82), Expect = 4e-04
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
G ++C CGK F + H + H G P +
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 34.0 bits (79), Expect = 8e-04
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K C CGK FS L H R H GE
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGE 38
Score = 33.3 bits (77), Expect = 0.002
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
++C ECGK F+ L H +H G +
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 37.5 bits (88), Expect = 4e-05
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
+ G KPY C C KAF S+L H H G +
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 35.1 bits (82), Expect = 3e-04
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C EC K F K +L H H G S
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 34.4 bits (80), Expect = 6e-04
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 95 HLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G K + C C K F++K L H RTH GE
Sbjct: 7 GTGEKPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 34.0 bits (79), Expect = 0.001
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVC 75
+ G Y+C C K F ++ H + H G
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 4e-05
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
+ G KPY C CGKAF + ++L +H H G K
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 2e-04
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G Y+C CGK F Q ++ H + H G KP +
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 4e-04
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+CGECGK F +K +L H +H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.002
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K + C CGK F+ K L H R H GE
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGE 38
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 4e-05
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 62 DHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
+ G KP+ C CGK F + S L H H G K
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 5e-05
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
G +KC CGK F Q + H + H G KP +
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 2e-04
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
++C ECGK+FT+ L++H VH G
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 3e-04
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K F CE CGK F+ L H R H GE
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGE 38
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 4e-05
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
+ G KPY C+ CGK+F S L+ H H G +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 36.7 bits (86), Expect = 8e-05
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G YKC CGK F ++ H + H G + +
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 36.0 bits (84), Expect = 2e-04
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C +CGK FT K L H H G +
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 95 HLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G K + C CGK F+ K L+ H + H GE
Sbjct: 7 GTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 5e-05
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACE 104
+ G +P+ C CGK+F++++ L +H H G K
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 36.7 bits (86), Expect = 1e-04
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
G +KC CGK FIQ H+ H + H G KP +
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 7e-04
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
++C ECGK F + L H +H G
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.003
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G + C CGK F L H R H GE
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGE 38
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 5e-05
Identities = 16/41 (39%), Positives = 17/41 (41%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
+ G KPY C CGKAF S L H H G K
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 34.8 bits (81), Expect = 5e-04
Identities = 13/42 (30%), Positives = 15/42 (35%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
G YKC CGK F + H H G KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 34.4 bits (80), Expect = 7e-04
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K + C CGK F ++ L H TH GE
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGE 38
Score = 34.1 bits (79), Expect = 0.001
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C ECGK F + SL H H G
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 37.3 bits (87), Expect = 5e-05
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGV 98
+ G+KP+ C C ++F R+ L H H+ V
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 35.0 bits (81), Expect = 4e-04
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 91 HIDAHLGVKKFACETCGKLFSSKHGLKYHVRTH 123
G+K F C C + FS L H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 27.7 bits (62), Expect = 0.21
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAH 67
G ++CP C + F + H+ H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 25.8 bits (57), Expect = 1.1
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVH 39
+QC +C + F+R L H H
Sbjct: 12 FQCPDCDRSFSRSDHLALHRKRH 34
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 6e-05
Identities = 14/41 (34%), Positives = 16/41 (39%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
+ G KPY C C K+F S L H H G K
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 2e-04
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G YKC +C K F + H + H G KP +
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 7e-04
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C C K F SL H +H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.003
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 95 HLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G K + C+ C K F L H R H GE
Sbjct: 7 GTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGE 38
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 6e-05
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
+ G KPY C CGK F + S L H H G K
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 9e-05
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G YKC CGK F Q H+ +H + H G KP +
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 5e-04
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C ECGK FT+ L H +H G
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.001
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K + C CGK+F+ L H R H GE
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGE 38
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 40.2 bits (93), Expect = 6e-05
Identities = 7/53 (13%), Positives = 12/53 (22%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTH 123
+ + + C C + S L HV +H
Sbjct: 151 STRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 39.8 bits (92), Expect = 1e-04
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 9 PLATTTSAYQCGECGKQFTRKFSLNAHLHVH 39
P A++ YQC C L+AH+ H
Sbjct: 173 PTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 37.9 bits (87), Expect = 4e-04
Identities = 8/54 (14%), Positives = 11/54 (20%)
Query: 42 SSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAH 95
S + Y C C DL H+ +H
Sbjct: 150 MSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 33.3 bits (75), Expect = 0.018
Identities = 7/57 (12%), Positives = 15/57 (26%)
Query: 12 TTTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHG 68
S ++ + Y+C +C + H+ +HG
Sbjct: 148 KPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHG 204
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 36.8 bits (86), Expect = 7e-05
Identities = 13/42 (30%), Positives = 15/42 (35%)
Query: 62 DHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
+ K Y C CGKAF R L RH H +
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 33.3 bits (77), Expect = 0.001
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y C ECGK FTR F L H +H S
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 31.0 bits (71), Expect = 0.013
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 91 HIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ K + C CGK F+ L H + H +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRK 38
Score = 29.9 bits (68), Expect = 0.036
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVC 75
S +Y C CGK F ++ H+ H + H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 7e-05
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
+ G KP+ C CGK++ + L +H H G K
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 2e-04
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
G +KC CGK + Q H+ H + H G KP +
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 6e-04
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
++CGECGK + ++ L H VH G
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G K F C CGK ++ + L H R H GE
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGE 38
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 8e-05
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y+C +CGK + KF+L+ H VH G
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 36.4 bits (85), Expect = 1e-04
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
+ G KPY C CGK + +L H H G +
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 36.0 bits (84), Expect = 2e-04
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G YKC CGK + ++ H + H G +P +
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 34.8 bits (81), Expect = 4e-04
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 95 HLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G K + CE CGK ++SK L H + H GE
Sbjct: 7 GTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGE 38
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 36.0 bits (84), Expect = 1e-04
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 71 KPYVCTY--CGKAFVRASDLKRHIDAHLGVK 99
+P++CT+ CGK F R+ +L+RH H G K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 28.7 bits (65), Expect = 0.069
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 99 KKFAC--ETCGKLFSSKHGLKYHVRTHKGE 126
+ F C CGK F+ L+ H RTH GE
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 36.4 bits (85), Expect = 1e-04
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHI-DAHLGVKKFAC 103
+ G KPY C CGKAF++ + L RH H G K
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 34.1 bits (79), Expect = 9e-04
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQA-HGGLKPYVCT 76
+ G Y+C CGK FIQ + H + H G KP +
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 31.0 bits (71), Expect = 0.013
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 17 YQCGECGKQFTRKFSLNAHL-HVHYGSSNYKCP 48
Y+C ECGK F + SL H + H G
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 27.9 bits (63), Expect = 0.18
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 95 HLGVKKFACETCGKLFSSKHGLKYHVR-THKGE 126
G K + C CGK F L H R H GE
Sbjct: 7 GTGKKPYECIECGKAFIQNTSLIRHWRYYHTGE 39
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 36.1 bits (84), Expect = 1e-04
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
+ +VC C +AF R LKRH +H K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 30.7 bits (70), Expect = 0.012
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ F CE C + F+ + LK H R+H E
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 25.0 bits (55), Expect = 1.6
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLK 71
+ C +C + F + H+K H ++H K
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 36.1 bits (84), Expect = 1e-04
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
+ GG PY+C CGK+F + L H +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSG 38
Score = 35.7 bits (83), Expect = 2e-04
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYG 41
Y CG+CGK FT++ SL H
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQ 36
Score = 35.3 bits (82), Expect = 3e-04
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 94 AHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G + C CGK F+ + L H R+
Sbjct: 5 SSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQS 37
Score = 31.1 bits (71), Expect = 0.011
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 39 HYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPY 73
G + Y C CGK F Q + H ++ P
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 1e-04
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
+ G K + C C K F ++S L H H G K
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 2e-04
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCT 76
+ G +KC C K F Q + H + H G KP +
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 5e-04
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
++C EC K FT+ SL H +H G
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 95 HLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G K F C C K F+ L H R H GE
Sbjct: 7 GAGKKLFKCNECKKTFTQSSSLTVHQRIHTGE 38
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 35.8 bits (83), Expect = 2e-04
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 67 HGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
G KPY C C + F + L +H H +
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 33.1 bits (76), Expect = 0.002
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 95 HLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G K ++C C + FS + L H + H +
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVK 36
Score = 31.1 bits (71), Expect = 0.010
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKC 47
Y C EC + F+ L H +H S
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 26.9 bits (60), Expect = 0.36
Identities = 7/37 (18%), Positives = 10/37 (27%)
Query: 39 HYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVC 75
G Y C C + F + H + H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 34.5 bits (80), Expect = 6e-04
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 65 QAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFA 102
G + Y C CGK+F + L H H G +
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 32.5 bits (75), Expect = 0.003
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYG 41
Y+C ECGK F +K SL H +H G
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTG 35
Score = 32.2 bits (74), Expect = 0.004
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 95 HLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
G + + C+ CGK F K L H R H G
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGS 36
Score = 30.2 bits (69), Expect = 0.022
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKPY 73
Y+C CGK F Q + H + H G P
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGPS 39
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 35.5 bits (81), Expect = 8e-04
Identities = 18/73 (24%), Positives = 23/73 (31%), Gaps = 5/73 (6%)
Query: 59 HMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHID-AHLGVKK---FACETCGKLFSSKH 114
H + Q Y C YC + H+D H V + C C L
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 115 GLKYHV-RTHKGE 126
L H + H GE
Sbjct: 65 ALSEHNLKYHPGE 77
Score = 34.0 bits (77), Expect = 0.003
Identities = 16/74 (21%), Positives = 21/74 (28%), Gaps = 5/74 (6%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQ-AHGGLK---PYVCTYCGKAFVRASDLKR 90
+ Y+C C L H+ H + YVC C R L
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 91 HI-DAHLGVKKFAC 103
H H G + F
Sbjct: 69 HNLKYHPGEENFKL 82
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 34.9 bits (79), Expect = 0.001
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 71 KPYVCTYCGKAFVRA-SDLKRHIDA-HLGVKKFACETCGKLFSSKHGLKYHVRT 122
VC C + LK+H++ C+ C K F SK GL YH
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
Score = 25.7 bits (55), Expect = 3.2
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 45 YKCPLCGKFFIQ-LCHMKDHIQA-HGGLKPYVCTYCGKAFVRASDLKRHIDA 94
CP C + L +K H++ C +C K F + L H A
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 33.3 bits (76), Expect = 0.002
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 90 RHIDAHLGVKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ G F C C ++F+ ++ L H RTH +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARK 38
Score = 32.9 bits (75), Expect = 0.003
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLG 97
+ G P+ C+ C + F + + L +H H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 28.7 bits (64), Expect = 0.087
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSS 43
++C +C + FT++ L H H S
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 27.5 bits (61), Expect = 0.28
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 34 AHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGG 69
+ G + +KC C + F Q ++ H + H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHAR 37
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 32.1 bits (72), Expect = 0.004
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 98 VKKFACETCGKLFSSKHGLKYHVRTHKGE 126
K F CE C K+F KH L+ H+R H E
Sbjct: 7 GKIFTCEYCNKVFKFKHSLQAHLRIHTNE 35
Score = 23.7 bits (50), Expect = 5.2
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 70 LKPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
K + C YC K F L+ H+ H K
Sbjct: 7 GKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 23.7 bits (50), Expect = 5.6
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 11 ATTTSAYQCGECGKQFTRKFSLNAHLHVHYG 41
++ + C C K F K SL AHL +H
Sbjct: 4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTN 34
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding
protein, DNA deadenylas hydrolase; 1.80A
{Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Length = 204
Score = 34.3 bits (78), Expect = 0.005
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 18/83 (21%)
Query: 35 HLHVHYGSSNYKCPLCGK-----------FFIQLCHMKDHIQAHGGLK-----PYVCTYC 78
+LH+H + ++ P K FF+++ ++ G L C C
Sbjct: 117 NLHLHIMTLDHVSP-SLKNSAHYISFTSPFFVKIDTPTSNLPTRGTLTSLFQEDLKCWRC 175
Query: 79 GKAFVRA-SDLKRHIDAHLGVKK 100
G+ F R + LK H+
Sbjct: 176 GETFGRHFTKLKAHLQEEYDDWL 198
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 31.6 bits (71), Expect = 0.006
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 70 LKPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
+KPYVC +C + F L+RH+ H G K
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 25.9 bits (56), Expect = 0.79
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 98 VKKFACETCGKLFSSKHGLKYHVRTHKGE 126
+K + C C + F+ L+ HVR H GE
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGE 29
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 32.1 bits (73), Expect = 0.006
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 71 KPYVCTY--CGKAFVRASDLKRHIDAHLG 97
K + C + C K F R +++ HI HL
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLE 45
Score = 28.7 bits (64), Expect = 0.10
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 99 KKFAC--ETCGKLFSSKHGLKYHVRTHKGE 126
K F C C K F ++ ++ H++TH +
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLED 46
Score = 27.9 bits (62), Expect = 0.20
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 17 YQC--GECGKQFTRKFSLNAHLHVHYG 41
++C C K F R++++ +H+ H
Sbjct: 19 FECLFPGCTKTFKRRYNIRSHIQTHLE 45
Score = 24.4 bits (53), Expect = 4.2
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 44 NYKCPL--CGKFFIQLCHMKDHIQAH 67
++C C K F + +++ HIQ H
Sbjct: 18 TFECLFPGCTKTFKRRYNIRSHIQTH 43
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 32.9 bits (74), Expect = 0.008
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 71 KPYVCTYCGKAFVRA-SDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRT 122
C C + LK+H++ + F C CGK S G+KYHV
Sbjct: 33 GSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMA 84
Score = 26.0 bits (56), Expect = 2.5
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 45 YKCPLCGKFFIQ-LCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFAC 103
CP C + + +K H++ + + C +CGK + +K H+ A+
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHMENCK-QEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSGP 93
Query: 104 ET 105
+
Sbjct: 94 SS 95
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 33.2 bits (75), Expect = 0.017
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRT-HK 124
+ C C FS+ L H+R+ H+
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRSDHR 141
Score = 29.4 bits (65), Expect = 0.36
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 9 PLATTTSAYQCGECGKQFTRKFSLNAHL 36
S+Y C C +F+ +L+ HL
Sbjct: 109 TPIVNPSSYVCNVCNARFSTMSALSEHL 136
Score = 28.2 bits (62), Expect = 0.75
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 71 KPYVCTYCGKAFVRASDLKRHI 92
YVC C F S L H+
Sbjct: 115 SSYVCNVCNARFSTMSALSEHL 136
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 26
Score = 30.1 bits (67), Expect = 0.022
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAH 95
KPYVC CGK FV++S L HI H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
Score = 23.1 bits (49), Expect = 8.3
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTH 123
K + CE CGK F L H+R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
Score = 22.7 bits (48), Expect = 9.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAH 67
Y C CGK F+Q + +HI+ H
Sbjct: 3 YVCERCGKRFVQSSQLANHIRHH 25
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 32.3 bits (73), Expect = 0.028
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 64 IQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCG 107
I+AHG C CGK + K + H C+ CG
Sbjct: 136 IEAHGSFAHCHCIGCGKVY-PPQVFKSKLAEHPIKDFVKCDVCG 178
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 32.4 bits (74), Expect = 0.029
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 64 IQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCG 107
I+AHG C CGK + K + H C+ CG
Sbjct: 128 IEAHGSFAHCHCIGCGKVY-PPQVFKSKLAEHPIKDFVKCDVCG 170
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.9 bits (72), Expect = 0.029
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 12/48 (25%)
Query: 46 KCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHID 93
CP C + ++ ++ + G + VC CG V + L +D
Sbjct: 23 TCPECKVYPPKI--VERF--SEGDV---VCALCG--LVLSDKL---VD 58
Score = 25.4 bits (55), Expect = 6.0
Identities = 7/33 (21%), Positives = 10/33 (30%), Gaps = 7/33 (21%)
Query: 19 CGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCG 51
C EC + + + C LCG
Sbjct: 24 CPECK-------VYPPKIVERFSEGDVVCALCG 49
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 30.0 bits (67), Expect = 0.030
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 71 KPYVCTY--CGKAFVRASDLKRHIDAH 95
+PY C + C KAFVR DL RH +H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSH 28
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 29.6 bits (67), Expect = 0.032
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 71 KPYVCTY--CGKAFVRASDLKRHIDAHLGVK 99
K ++C CGK + + S L+ H+ H G +
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 27.7 bits (62), Expect = 0.16
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 99 KKFAC--ETCGKLFSSKHGLKYHVRTHKGE 126
K+ C + CGK++ L+ H+R H GE
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGE 36
Score = 23.1 bits (50), Expect = 8.7
Identities = 8/29 (27%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 45 YKCPL--CGKFFIQLCHMKDHIQAHGGLK 71
+ C + CGK + + H++ H++ H G +
Sbjct: 9 HICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 31.7 bits (71), Expect = 0.045
Identities = 9/61 (14%), Positives = 19/61 (31%)
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFSSKHGLKYHVRT 122
I+ L+ + K S H + G K+ E ++ + L+ +
Sbjct: 171 DIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHL 230
Query: 123 H 123
Sbjct: 231 S 231
Score = 30.6 bits (68), Expect = 0.13
Identities = 13/82 (15%), Positives = 17/82 (20%), Gaps = 13/82 (15%)
Query: 27 TRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRAS 86
R L V Y K + H G K +
Sbjct: 169 CRDIRPGEWLRVWYSED------YMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPE 222
Query: 87 DLKRHIDAHLGVKKFACETCGK 108
DL+ I + GK
Sbjct: 223 DLRGPI-------HLSVLRQGK 237
Score = 28.6 bits (63), Expect = 0.44
Identities = 7/43 (16%), Positives = 10/43 (23%), Gaps = 7/43 (16%)
Query: 10 LATTTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGK 52
LA Q + + L +H GK
Sbjct: 202 LARGEKRLQREKSEQVLDNPEDLRGPIH-------LSVLRQGK 237
Score = 27.5 bits (60), Expect = 1.1
Identities = 4/49 (8%), Positives = 12/49 (24%)
Query: 19 CGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAH 67
+ K+ H ++ G + + ++ I
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 29.0 bits (64), Expect = 0.057
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KP C CGKAF +AS L H+ H G K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 24.3 bits (52), Expect = 3.2
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K C CGK F+ L HVR H GE
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGE 28
Score = 23.2 bits (49), Expect = 8.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 18 QCGECGKQFTRKFSLNAHLHVHYG 41
QC CGK FT+ SL AH+ H G
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTG 27
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 28.2 bits (62), Expect = 0.11
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 98 VKKFACETCGKLFSSKHGLKYHVRTHKG 125
++ ++C CGK FS KH ++ H R H G
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 25.5 bits (55), Expect = 0.93
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYG 41
Y C CGK+F+ K + H VH G
Sbjct: 4 YSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 24.4 bits (52), Expect = 2.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 70 LKPYVCTYCGKAFVRASDLKRHIDAHLG 97
++PY C+ CGK F ++ H H G
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding
domain, structural genomics, struc genomics consortium,
SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Length = 318
Score = 30.4 bits (69), Expect = 0.13
Identities = 9/49 (18%), Positives = 14/49 (28%), Gaps = 5/49 (10%)
Query: 64 IQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLG-----VKKFACETCG 107
+ HG + C C +VR + + G K C
Sbjct: 130 AELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACR 178
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Length = 355
Score = 30.5 bits (69), Expect = 0.13
Identities = 9/49 (18%), Positives = 14/49 (28%), Gaps = 5/49 (10%)
Query: 64 IQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLG-----VKKFACETCG 107
+ HG + C C +VR + + G K C
Sbjct: 130 AELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACR 178
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 28.2 bits (62), Expect = 0.13
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 69 GLKPYVCTYCGKAFVR-ASDLKRHIDAHLGVK 99
+ C YC F++ SDL+RHI AH GVK
Sbjct: 6 SGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK 37
Score = 25.5 bits (55), Expect = 1.2
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 41 GSSNYKCPLCGKFFIQL-CHMKDHIQAHGGLK 71
KCP C +F++ ++ HI AH G+K
Sbjct: 6 SGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK 37
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1,
nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga
maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A*
2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A*
2h4h_A* 3jr3_A* 2h59_A*
Length = 246
Score = 29.8 bits (68), Expect = 0.16
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 64 IQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCG 107
I+ HG ++ Y C C K + D+ + +++ C+ C
Sbjct: 113 IELHGNVEEYYCVRCEKKYTVE-DVIKKLESSDVPL---CDDCN 152
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 28.2 bits (62), Expect = 0.17
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 99 KKFACETCGKLFSSKHGLKYHVR 121
K +AC+ CGK + ++ GL YH
Sbjct: 6 KPYACDICGKRYKNRPGLSYHYA 28
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 27.8 bits (61), Expect = 0.18
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 66 AHGGLKPYVCTYCGKAFVRASDLKRHIDAH 95
G +P+VC C AF ++ RH+ H
Sbjct: 1 GSSGKRPFVCRICLSAFTTKANCARHLKVH 30
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 28.0 bits (61), Expect = 0.20
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 94 AHLGVKKFACETCGKLFSSKHGLKYHVRTHKG 125
G K ++C CG F K + YHVR+H G
Sbjct: 4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 27.2 bits (59), Expect = 0.33
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 66 AHGGLKPYVCTYCGKAFVRASDLKRHIDAHLG 97
G KPY C CG F R + H+ +H G
Sbjct: 4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 24.1 bits (51), Expect = 5.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKCP 48
Y C CG +F RK ++ H+ H GS P
Sbjct: 11 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGP 42
Score = 24.1 bits (51), Expect = 5.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 39 HYGSSNYKCPLCGKFFIQLCHMKDHIQAHGG 69
G Y CP+CG F + M H+++H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.6 bits (60), Expect = 0.30
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 15 SAYQCGECGKQFTRKFSLNAHLHVHYGSS 43
+ +C ECGK F L H +H G S
Sbjct: 11 TTSECQECGKIFRHSSLLIEHQALHAGES 39
Score = 24.5 bits (52), Expect = 3.0
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 72 PYVCTYCGKAFVRASDLKRHIDAHLG 97
C CGK F +S L H H G
Sbjct: 12 TSECQECGKIFRHSSLLIEHQALHAG 37
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 27.0 bits (60), Expect = 0.37
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ + C C + F S L H+ H+ +
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRD 32
Score = 23.2 bits (50), Expect = 9.6
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAH 95
+ Y C++C + F A L H++ H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent
deacetylase, sirtuin, substrate peptide comple
hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens}
PDB: 3gls_A 3glt_A* 3glu_A
Length = 285
Score = 28.1 bits (63), Expect = 0.67
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 64 IQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCG 107
++AHG CT C + F D++ + A + C C
Sbjct: 131 VEAHGTFASATCTVCQRPF-PGEDIRADVMAD---RVPRCPVCT 170
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 26.3 bits (57), Expect = 0.69
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 11 ATTTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYK 46
+ ++QC ECG+ F + SL H +H G N
Sbjct: 7 GSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSG 42
Score = 26.3 bits (57), Expect = 0.89
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVKK 100
K + C CG+ F + L H H+G K
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQKN 40
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin,
acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ;
1.85A {Saccharomyces cerevisiae}
Length = 354
Score = 28.3 bits (63), Expect = 0.79
Identities = 6/31 (19%), Positives = 8/31 (25%), Gaps = 1/31 (3%)
Query: 64 IQAHGGLKPYVCTYCGKAFVRASDLKRHIDA 94
+Q HG C C + I
Sbjct: 153 VQCHGSFATATCVTCHWNLPG-ERIFNKIRN 182
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 26.0 bits (57), Expect = 0.80
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 71 KPYVCTYCGKAFVRASDLKRH 91
K Y C C +AF R L RH
Sbjct: 1 KAYACGLCNRAFTRRDLLIRH 21
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 27.3 bits (60), Expect = 0.82
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 97 GVKKFACETCGKLFSSKHGLKYHVRT--HKGECKR 129
G C C + F LK H R+ HK K+
Sbjct: 47 GGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQ 81
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA
replication, MCM complex, AAA+ Pro ATP-binding,
DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Length = 595
Score = 27.6 bits (62), Expect = 1.4
Identities = 8/66 (12%), Positives = 19/66 (28%), Gaps = 10/66 (15%)
Query: 3 EIRPRDPLATTTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLC---GKFFIQ--L 57
++ R + Y+ ++ + + CP C G+F +
Sbjct: 126 PVKER----IYKATYKHIHPDCMQEFEWPEDEEMPEVLEMPT-ICPKCGKPGQFRLIPEK 180
Query: 58 CHMKDH 63
+ D
Sbjct: 181 TKLIDW 186
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.2 bits (54), Expect = 1.7
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 71 KPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KPY C C A ++L H+ H G K
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 23.3 bits (49), Expect = 8.4
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
K + C C + K L H+R H GE
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGE 35
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 26.9 bits (60), Expect = 1.7
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 67 HGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCG 107
HG + VC C K + + + C CG
Sbjct: 149 HGNVFEAVCCTCNKIVKLNKIMLQKTSHFMHQLPPECP-CG 188
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 25.6 bits (55), Expect = 2.0
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 65 QAHGGLKPYVCTYCGKAFVRASDLKRHIDAH 95
G+ P C CGK F A+ L++H H
Sbjct: 8 LREAGILP--CGLCGKVFTDANRLRQHEAQH 36
Score = 25.2 bits (54), Expect = 3.0
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHG 68
C LCGK F ++ H HG
Sbjct: 14 LPCGLCGKVFTDANRLRQHEAQHG 37
Score = 24.8 bits (53), Expect = 4.2
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 101 FACETCGKLFSSKHGLKYHVRTH 123
C CGK+F+ + L+ H H
Sbjct: 14 LPCGLCGKVFTDANRLRQHEAQH 36
Score = 24.4 bits (52), Expect = 6.3
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSS 43
CG CGK FT L H H +S
Sbjct: 14 LPCGLCGKVFTDANRLRQHEAQHGVTS 40
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 26.8 bits (58), Expect = 2.1
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 30 FSLNAHLHVHYGSSNYKCPLCGK 52
F LH ++CP+C
Sbjct: 274 FDALWFLHSQLQIPTWQCPVCQI 296
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 26.5 bits (58), Expect = 2.1
Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 12/109 (11%)
Query: 13 TTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKFFIQL---CHMKD------- 62
+ S +C CG + +F L A + ++ S KC C + + K
Sbjct: 2 SLSWKRCAGCGGKIADRFLLYA-MDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRN 60
Query: 63 HIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCGKLFS 111
G C+ CG++ + + R +K F C TC
Sbjct: 61 DYIRLFGNSGA-CSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLV 108
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 26.6 bits (58), Expect = 2.2
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 46 KCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHI 92
CP C + F Q H+ HI + C C + D + H
Sbjct: 112 DCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-EDKEIHD 156
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 24.9 bits (54), Expect = 2.2
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 73 YVCTYCGKAFVRASDLKRHIDAHLGVKK 100
+ C C K F+R+ L +HI H + +
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGE 30
Score = 24.5 bits (53), Expect = 2.3
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 100 KFACETCGKLFSSKHGLKYHVRTHKGECK 128
KFAC C K F L H+ H+ +
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHELLGE 30
Score = 23.3 bits (50), Expect = 8.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKP 72
+ CP C K F++ H+ HI H L
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGE 30
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 26.7 bits (58), Expect = 2.5
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRT--HKGECKR 129
K C C + F + + H+ HK +
Sbjct: 291 KGIYCPFCSRWFKTSSVFESHLVGKIHKKNESK 323
>1m2k_A Silent information regulator 2; protein-ligand complex, gene
regulation; HET: APR; 1.47A {Archaeoglobus fulgidus}
SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A*
1ici_A*
Length = 249
Score = 26.4 bits (59), Expect = 2.6
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 7/41 (17%)
Query: 67 HGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCG 107
HG L+ CT C +F S K C+ CG
Sbjct: 116 HGSLRVVRCTSCNNSFEVESAPKIPPLPK-------CDKCG 149
>2czr_A TBP-interacting protein; tata-binding protein (TBP),
hyperthermophilic archaeon, Zn-finger motif,
transcription; 2.30A {Thermococcus kodakarensis} SCOP:
c.52.4.1
Length = 226
Score = 26.5 bits (58), Expect = 2.7
Identities = 9/24 (37%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHG 68
YKC CGK ++ + +++ H++ HG
Sbjct: 155 YKCEECGK-YVDIENLEAHLREHG 177
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring
domain, structural GE consortium, SGC; 2.39A {Homo
sapiens} PDB: 2asq_B
Length = 360
Score = 26.5 bits (57), Expect = 2.7
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 4 IRPRDPLATT--TSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCGKF 53
+ PL T + C F +L ++ + CP+C K
Sbjct: 214 VSLMCPLGKMRLTIPCRAVTCTHLQC--FDAALYLQMNEKKPTWICPVCDKK 263
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation,
transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Length = 323
Score = 26.3 bits (58), Expect = 3.3
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 64 IQAHGGLKPYVCTYCG-KAFVRASDLKRHIDAHLGVKKFACETCGKL 109
++AHG C + S +K I + + K CE C L
Sbjct: 151 VEAHGTFYTSHCVSASCRHEYPLSWMKEKIFSEVTPK---CEDCQSL 194
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 24.1 bits (52), Expect = 3.4
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 100 KFACETCGKLFSSKHGLKYHVRTHKGE 126
KFAC C K F L H+ H+ +
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENK 28
Score = 23.7 bits (51), Expect = 4.4
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 73 YVCTYCGKAFVRASDLKRHIDAHLGVK 99
+ C C K F+R+ L HI H K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
Score = 22.9 bits (49), Expect = 8.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLK 71
+ CP C K F++ H+ HI H K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE]
hydrogenase maturation, zinc-finger, nickel binding,
metal-binding; HET: FME; 2.30A {Pyrococcus
kodakaraensis} PDB: 3a44_A*
Length = 139
Score = 25.8 bits (56), Expect = 3.6
Identities = 7/48 (14%), Positives = 14/48 (29%), Gaps = 9/48 (18%)
Query: 19 CGECGKQFT---------RKFSLNAHLHVHYGSSNYKCPLCGKFFIQL 57
C C ++ + + H + CP CG ++
Sbjct: 73 CRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEV 120
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 24.4 bits (52), Expect = 3.6
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 41 GSSNYKCPLCGKFFIQLCHMKDHI-QAHGGLK 71
GSS Y C LC K F+ ++ HI + HG +
Sbjct: 4 GSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ 35
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc
ribbon, crotonase superfamily, spiral domain, ligase;
3.20A {Escherichia coli} SCOP: c.14.1.4
Length = 304
Score = 26.0 bits (58), Expect = 3.7
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 9/35 (25%)
Query: 45 YKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCG 79
KC CG Q+ + + + VC C
Sbjct: 25 TKCDSCG----QVLYRAELERNL-----EVCPKCD 50
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 24.4 bits (52), Expect = 3.8
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 94 AHLGVKKFACETCGKLFSSKHGLKYHVRTH 123
+ K F C C K FS L H R H
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30;
helix-turn-helix, Zn-binding protein, DNA-binding,
transcrip transcription regulation; HET: PE4; 1.70A
{Escherichia coli k-12} PDB: 3hi2_A
Length = 78
Score = 25.0 bits (54), Expect = 3.8
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 44 NYKCPLCGKFFIQLCHMKDHIQAHGGLKPYV-------CTYCGKAFVRASDLKRHIDAHL 96
+ KCP+C + + +KD G K + C +C ++ + + +
Sbjct: 2 HMKCPVCHQGEMVS-GIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNKEESDAFMAQVK 60
Query: 97 GVKK 100
+
Sbjct: 61 AFRA 64
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain
associated with ring and TRAF domains protein 1,
malignant 62; NMR {Homo sapiens}
Length = 76
Score = 24.9 bits (54), Expect = 4.0
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 46 KCPL-CGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHID 93
CP C + + H+Q + C +CG F + H
Sbjct: 18 PCPNRCPMK-LSRRDLPAHLQHDCPKRRLKCEFCGCDFSG-EAYESHEG 64
>3ung_C CMR2DHD; ferredoxin fold, nucleotide-binding, polymerase, CMR
complex function; HET: ADP; 2.31A {Pyrococcus furiosus}
PDB: 3ur3_C 4doz_A
Length = 693
Score = 26.2 bits (56), Expect = 4.1
Identities = 9/46 (19%), Positives = 13/46 (28%), Gaps = 2/46 (4%)
Query: 35 HLHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKP--YVCTYC 78
+KC +CG+ M DH +C C
Sbjct: 258 RFEKSEQLKGWKCHVCGENLAIFGDMYDHDNLKSLWLDEEPLCPMC 303
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 25.0 bits (54), Expect = 4.2
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 46 KCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAH 95
C C + + +K+H + + G + +C CG+ V DLK H +
Sbjct: 19 VCQHC-DLELSILKLKEH-EDYCGARTELCGNCGR-NVLVKDLKTHPEVC 65
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA
binding motif, transcriptional regulator, bacter
antitoxin, Zn binding protein, transcription
regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB:
3gn5_A* 3gn5_B* 2kz8_A
Length = 133
Score = 25.5 bits (55), Expect = 4.6
Identities = 8/62 (12%), Positives = 19/62 (30%), Gaps = 6/62 (9%)
Query: 46 KCPLCGKFFIQLCHMKDHIQAHG------GLKPYVCTYCGKAFVRASDLKRHIDAHLGVK 99
KCP+C + + G G+ C +C ++ + + + +
Sbjct: 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNKEESDAFMAQVKAFR 63
Query: 100 KF 101
Sbjct: 64 AS 65
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 23.5 bits (50), Expect = 5.1
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 16 AYQCGECGKQFTRKFSLNAHLHVHY 40
A+ C C K+F R +L+ H+ +
Sbjct: 2 AFACPACPKRFMRSDALSKHIKTAF 26
Score = 23.1 bits (49), Expect = 9.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 73 YVCTYCGKAFVRASDLKRHI 92
+ C C K F+R+ L +HI
Sbjct: 3 FACPACPKRFMRSDALSKHI 22
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron
transfer, DIIR center, oxidoreductase; 1.40A
{Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1
PDB: 1yv1_A 1yux_A
Length = 202
Score = 25.5 bits (55), Expect = 5.9
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 13/35 (37%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCG 51
+ C CG ++H G KCP+C
Sbjct: 172 HLCPICG-------------YIHKGEDFEKCPICF 193
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue,
hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP:
c.31.1.5
Length = 235
Score = 25.2 bits (56), Expect = 6.3
Identities = 9/44 (20%), Positives = 12/44 (27%), Gaps = 7/44 (15%)
Query: 64 IQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCG 107
I HG L C+ G+ D+ H C
Sbjct: 105 IHMHGELLKVRCSQSGQVLDWTGDVTPEDKCH-------CCQFP 141
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Rhodobacter sphaeroides 2}
Length = 80
Score = 24.2 bits (52), Expect = 6.7
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 57 LCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAH 95
L H + + C YC + ++ S ++ H
Sbjct: 38 LGHPRVWLSIPHETGFVECGYCDRRYIHESFAAAKLEHH 76
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 23.2 bits (49), Expect = 7.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 17 YQCGECGKQFTRKFSLNAHLHVH 39
Y+CG C + F K +L+ H VH
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger;
NMR {Homo sapiens} SCOP: g.41.3.1
Length = 62
Score = 24.1 bits (52), Expect = 7.0
Identities = 8/48 (16%), Positives = 14/48 (29%), Gaps = 3/48 (6%)
Query: 60 MKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCG 107
++ + + C C F + + D G F C C
Sbjct: 2 IETDERDSTNRASFKCPVCSSTF-TDLEANQLFDPMTG--TFRCTFCH 46
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine
diphosphate binding domain, transferase; HET: TPP; 2.22A
{Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10
c.48.1.1
Length = 673
Score = 25.1 bits (56), Expect = 7.8
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 64 IQAHGGLKPYVCT 76
+ AH G+ P+ T
Sbjct: 421 LDAHDGIIPFGGT 433
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 23.3 bits (49), Expect = 7.9
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 99 KKFACETCGKLFSSKHGLKYHVRTHKGE 126
+ ++C C K FS +K H++T+ E
Sbjct: 8 RSYSCPVCEKSFSEDRLIKSHIKTNHPE 35
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring,
ATP-binding, chromosomal protein, coiled coil, DNA
damage; 2.31A {Saccharomyces cerevisiae}
Length = 267
Score = 25.3 bits (54), Expect = 8.2
Identities = 10/79 (12%), Positives = 23/79 (29%), Gaps = 17/79 (21%)
Query: 36 LHVHYGSSNYKCPLCGKFFIQLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAH 95
L + G CP+ + P + C F R ++ ++ +
Sbjct: 173 LQIEGGKIELTCPIT------CKPYEA---------PLISRKCNHVFDRDG-IQNYLQGY 216
Query: 96 LGVKKFACETCGKLFSSKH 114
+ C ++ S +
Sbjct: 217 -TTRDCPQAACSQVVSMRD 234
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 25.0 bits (55), Expect = 8.4
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 97 GVKKFACETCGKLFSSKHGLKY 118
G+ K E L+ K ++
Sbjct: 136 GLSKCFGEDLASLYYHKFDIET 157
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 25.2 bits (54), Expect = 8.5
Identities = 7/44 (15%), Positives = 12/44 (27%), Gaps = 6/44 (13%)
Query: 8 DPLATTTSAYQCGECGKQFTRKFSLNAHLHVHYGSSNYKCPLCG 51
PL +C C +N + ++C C
Sbjct: 220 PPLNEDGLIVRCRRCRS------YMNPFVTFIEQGRRWRCNFCR 257
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex,
restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE;
1.50A {Helicobacter pylori} PDB: 3fc3_A*
Length = 200
Score = 24.8 bits (53), Expect = 8.6
Identities = 21/95 (22%), Positives = 29/95 (30%), Gaps = 8/95 (8%)
Query: 1 AREIRPRDPLATTTSAYQCGECGKQFTRKFSLNAHLHVHYG-----SSNYKCPLCGKFFI 55
EI D T+ C EC K + S + CP+C K I
Sbjct: 89 GFEINQTDAKGRKTTRPSCRECRKNIDGVKLSSTEKKKMDEIAPPKGSVFTCPICEKRSI 148
Query: 56 QLCH---MKDHIQAHGGLKPYVCTYCGKAFVRASD 87
+ DH G + ++C C R D
Sbjct: 149 VGVTANLVHDHNHDTGWGREWICDSCNTGLGRFKD 183
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family;
enzyme-substrate complex, protein binding,
transcription; HET: ALY MES; 2.00A {Archaeoglobus
fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Length = 253
Score = 24.8 bits (55), Expect = 9.5
Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Query: 67 HGGLKPYVCTYCGKAFVRASDLKRHIDAHLGVKKFACETCG 107
HG + C C + + + ++ + C CG
Sbjct: 118 HGSMDKLDCLDCHETYDWSEFVEDFNKGEI----PRCRKCG 154
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural
genomics, PSI-2, protein structure initiative; NMR
{Silicibacter pomeroyi}
Length = 67
Score = 23.8 bits (51), Expect = 10.0
Identities = 8/40 (20%), Positives = 13/40 (32%)
Query: 56 QLCHMKDHIQAHGGLKPYVCTYCGKAFVRASDLKRHIDAH 95
L H + +Q C YC +V ++ H
Sbjct: 24 ALGHPRVWLQIPEDTGWVECPYCDCKYVLKGSKADALEHH 63
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural
genomics, center for structural genomics of infectious
DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Length = 663
Score = 24.8 bits (55), Expect = 10.0
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 64 IQAHGGLKPYVCT 76
+ +GG+KPY T
Sbjct: 422 LSLYGGIKPYGGT 434
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.139 0.466
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,955,010
Number of extensions: 103755
Number of successful extensions: 1653
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1341
Number of HSP's successfully gapped: 793
Length of query: 129
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 46
Effective length of database: 4,384,350
Effective search space: 201680100
Effective search space used: 201680100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.5 bits)