BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13127
(64 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18488|EMS_DROME Homeotic protein empty spiracles OS=Drosophila melanogaster GN=ems
PE=2 SV=2
Length = 497
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/56 (82%), Positives = 50/56 (89%), Gaps = 1/56 (1%)
Query: 10 PG-FLLQPFRKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64
PG FL+ PFRKPKRIRTAFSPSQLLKLEHAFE N YVVGAERK LAQ+L+L+ETQ
Sbjct: 380 PGSFLVPPFRKPKRIRTAFSPSQLLKLEHAFESNQYVVGAERKALAQNLNLSETQV 435
>sp|Q04744|EMX2_MOUSE Homeobox protein EMX2 OS=Mus musculus GN=Emx2 PE=2 SV=3
Length = 253
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/46 (95%), Positives = 45/46 (97%)
Query: 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
RKPKRIRTAFSPSQLL+LEHAFEKNHYVVGAERKQLA SLSLTETQ
Sbjct: 153 RKPKRIRTAFSPSQLLRLEHAFEKNHYVVGAERKQLAHSLSLTETQ 198
>sp|Q04743|EMX2_HUMAN Homeobox protein EMX2 OS=Homo sapiens GN=EMX2 PE=1 SV=2
Length = 252
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/46 (95%), Positives = 45/46 (97%)
Query: 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
RKPKRIRTAFSPSQLL+LEHAFEKNHYVVGAERKQLA SLSLTETQ
Sbjct: 152 RKPKRIRTAFSPSQLLRLEHAFEKNHYVVGAERKQLAHSLSLTETQ 197
>sp|Q17R00|EMX2_BOVIN Homeobox protein EMX2 OS=Bos taurus GN=EMX2 PE=2 SV=1
Length = 253
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/46 (95%), Positives = 45/46 (97%)
Query: 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
RKPKRIRTAFSPSQLL+LEHAFEKNHYVVGAERKQLA SLSLTETQ
Sbjct: 153 RKPKRIRTAFSPSQLLRLEHAFEKNHYVVGAERKQLAHSLSLTETQ 198
>sp|Q04741|EMX1_HUMAN Homeobox protein EMX1 OS=Homo sapiens GN=EMX1 PE=2 SV=2
Length = 257
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/60 (81%), Positives = 52/60 (86%), Gaps = 4/60 (6%)
Query: 8 DIP--GFLLQ-PF-RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
D+P G LL PF RKPKRIRTAFSPSQLL+LE AFEKNHYVVGAERKQLA SLSL+ETQ
Sbjct: 143 DVPQDGLLLHGPFARKPKRIRTAFSPSQLLRLERAFEKNHYVVGAERKQLAGSLSLSETQ 202
>sp|Q04742|EMX1_MOUSE Homeobox protein EMX1 OS=Mus musculus GN=Emx1 PE=2 SV=2
Length = 257
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/60 (81%), Positives = 52/60 (86%), Gaps = 4/60 (6%)
Query: 8 DIP--GFLLQ-PF-RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
D+P G LL PF RKPKRIRTAFSPSQLL+LE AFEKNHYVVGAERKQLA SLSL+ETQ
Sbjct: 143 DVPQDGLLLHGPFARKPKRIRTAFSPSQLLRLERAFEKNHYVVGAERKQLAGSLSLSETQ 202
>sp|Q804S6|EMX1_DANRE Homeobox protein EMX1 OS=Danio rerio GN=emx1 PE=2 SV=1
Length = 231
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/53 (84%), Positives = 47/53 (88%), Gaps = 1/53 (1%)
Query: 12 FLLQPF-RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
L PF RKPKRIRTAFSPSQLL+LE AFEKNHYVVGAERKQLA SLSL+ETQ
Sbjct: 124 LLHGPFARKPKRIRTAFSPSQLLRLERAFEKNHYVVGAERKQLANSLSLSETQ 176
>sp|Q6GLB9|EMX1_XENTR Homeobox protein EMX1 OS=Xenopus tropicalis GN=emx1 PE=2 SV=1
Length = 233
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/53 (84%), Positives = 47/53 (88%), Gaps = 1/53 (1%)
Query: 12 FLLQPF-RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
L PF RKPKRIRTAFSPSQLL+LE AFEKNHYVVGAERKQLA SLSL+ETQ
Sbjct: 126 LLHGPFARKPKRIRTAFSPSQLLRLERAFEKNHYVVGAERKQLASSLSLSETQ 178
>sp|Q06615|NOTO_XENLA Homeobox protein notochord OS=Xenopus laevis GN=noto PE=2 SV=1
Length = 236
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 32/45 (71%)
Query: 19 KPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
K KRIRT F+P QL KLE F K Y+VG ER LA +L+LTETQ
Sbjct: 137 KMKRIRTVFTPEQLEKLEKEFLKQQYMVGTERVDLASTLNLTETQ 181
>sp|Q91770|NOT2_XENLA Homeobox protein not2 OS=Xenopus laevis GN=not2 PE=2 SV=1
Length = 233
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 31/43 (72%)
Query: 21 KRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
KRIRT F+P QL +LE F K Y+VG ER LA +L+LTETQ
Sbjct: 136 KRIRTVFTPEQLERLEKEFLKQQYMVGTERVDLASTLNLTETQ 178
>sp|Q9PVN2|VAX1_CHICK Ventral anterior homeobox 1 OS=Gallus gallus GN=VAX1 PE=2 SV=1
Length = 327
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 19 KPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64
+PKR RT+F+ QL +LE F++ YVVG ER +LA+ L+L+ETQ
Sbjct: 98 RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQV 143
>sp|Q9JLZ9|VAX2_RAT Ventral anterior homeobox 2 OS=Rattus norvegicus GN=Vax2 PE=2 SV=1
Length = 292
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 19 KPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64
+PKR RT+F+ QL +LE F++ YVVG ER +LA+ L+L+ETQ
Sbjct: 101 RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQV 146
>sp|Q9UIW0|VAX2_HUMAN Ventral anterior homeobox 2 OS=Homo sapiens GN=VAX2 PE=1 SV=1
Length = 290
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 19 KPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64
+PKR RT+F+ QL +LE F++ YVVG ER +LA+ L+L+ETQ
Sbjct: 101 RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQV 146
>sp|Q9WTP9|VAX2_MOUSE Ventral anterior homeobox 2 OS=Mus musculus GN=Vax2 PE=1 SV=1
Length = 292
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 19 KPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64
+PKR RT+F+ QL +LE F++ YVVG ER +LA+ L+L+ETQ
Sbjct: 101 RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQV 146
>sp|Q801E0|VAX1_DANRE Ventral anterior homeobox 1 OS=Danio rerio GN=vax1 PE=2 SV=1
Length = 317
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 19 KPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64
+PKR RT+F+ QL +LE F++ YVVG ER +LA+ L+L+ETQ
Sbjct: 91 RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQV 136
>sp|Q9JM00|VAX1_RAT Ventral anterior homeobox 1 OS=Rattus norvegicus GN=Vax1 PE=2 SV=1
Length = 336
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 19 KPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64
+PKR RT+F+ QL +LE F++ YVVG ER +LA+ L+L+ETQ
Sbjct: 99 RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQV 144
>sp|Q9DDB0|VAX1B_XENLA Ventral anterior homeobox 1b OS=Xenopus laevis GN=vax1-b PE=2 SV=1
Length = 287
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 19 KPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64
+PKR RT+F+ QL +LE F++ YVVG ER +LA+ L+L+ETQ
Sbjct: 88 RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQV 133
>sp|Q5SQQ9|VAX1_HUMAN Ventral anterior homeobox 1 OS=Homo sapiens GN=VAX1 PE=1 SV=1
Length = 334
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 19 KPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64
+PKR RT+F+ QL +LE F++ YVVG ER +LA+ L+L+ETQ
Sbjct: 99 RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQV 144
>sp|Q2NKI2|VAX1_MOUSE Ventral anterior homeobox 1 OS=Mus musculus GN=Vax1 PE=2 SV=2
Length = 338
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 19 KPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64
+PKR RT+F+ QL +LE F++ YVVG ER +LA+ L+L+ETQ
Sbjct: 99 RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQV 144
>sp|Q9PU20|VAX2A_XENLA Ventral anterior homeobox 2a OS=Xenopus laevis GN=vax2-a PE=2 SV=1
Length = 302
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 19 KPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64
+PKR RT+F+ QL +LE F++ YVVG ER +LA+ L+L+ETQ
Sbjct: 104 RPKRTRTSFTAEQLYRLELEFQRCQYVVGRERTELARQLNLSETQV 149
>sp|Q9IAX9|VAX2B_XENLA Ventral anterior homeobox 2b OS=Xenopus laevis GN=vax2-b PE=2 SV=1
Length = 294
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 19 KPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64
+PKR RT+F+ QL +LE F++ YVVG ER +LA+ L+L+ETQ
Sbjct: 97 RPKRTRTSFTAEQLYRLELEFQRCQYVVGRERTELARQLNLSETQV 142
>sp|Q801E1|VAX2_DANRE Ventral anterior homeobox 2 OS=Danio rerio GN=vax2 PE=2 SV=1
Length = 307
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 19 KPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
+PKR RT+F+ QL +LE F++ YVVG ER +LA+ L+L+ETQ
Sbjct: 102 RPKRTRTSFTAEQLYRLELEFQRCQYVVGRERTELARQLNLSETQ 146
>sp|Q9YH71|VNT1B_XENLA Homeobox protein vent1B OS=Xenopus laevis GN=vent1B PE=2 SV=1
Length = 270
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%)
Query: 21 KRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
+R+RTAFSP Q+ KLE AF K Y+ +ERK+LA SL L+E Q
Sbjct: 129 RRLRTAFSPQQISKLEQAFNKQRYLGASERKKLATSLMLSEIQ 171
>sp|O93528|VAX1A_XENLA Ventral anterior homeobox 1a OS=Xenopus laevis GN=vax1-a PE=2 SV=1
Length = 295
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 19 KPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64
+PKR RT+F+ QL +LE F++ YVVG ER L++ L+L+ETQ
Sbjct: 96 RPKRSRTSFTAEQLYRLEMEFQRCQYVVGRERTDLSRQLNLSETQV 141
>sp|Q28ET4|VENT1_XENTR Homeobox protein vent1 OS=Xenopus tropicalis GN=vent1 PE=2 SV=1
Length = 262
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 32/43 (74%)
Query: 21 KRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
+R+RTAF+P Q+ +LE AF K Y+ +ERK+LA SL L+E Q
Sbjct: 128 RRLRTAFTPQQITRLEQAFNKQRYLGASERKKLATSLQLSEIQ 170
>sp|Q91926|VENT1_XENLA Homeobox protein vent1 OS=Xenopus laevis GN=vent1 PE=1 SV=1
Length = 264
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 31/43 (72%)
Query: 21 KRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
+R+RTAF+P Q+ KLE AF K Y+ ERK+LA SL L+E Q
Sbjct: 130 RRLRTAFTPQQISKLEQAFNKQRYLGAPERKKLATSLQLSEIQ 172
>sp|O42173|PV1_XENLA Homeobox protein pv.1 OS=Xenopus laevis GN=pv.1 PE=1 SV=1
Length = 282
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 31/43 (72%)
Query: 21 KRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
+ +RTAF+P Q+ KLE AF K Y+ +ERK+LA SL L+E Q
Sbjct: 130 RHLRTAFTPQQISKLEQAFNKQRYLGASERKKLATSLRLSEIQ 172
>sp|P17487|HM12_CAEEL Homeobox protein ceh-12 OS=Caenorhabditis elegans GN=ceh-12 PE=4
SV=2
Length = 180
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 32/50 (64%)
Query: 15 QPFRKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64
Q + K +R RTAFS QL++LE F N Y+ R QLAQ LSL+ETQ
Sbjct: 105 QAWGKMRRPRTAFSSEQLVQLEKQFSDNRYLSRPRRYQLAQQLSLSETQI 154
>sp|Q9BZE3|BARH1_HUMAN BarH-like 1 homeobox protein OS=Homo sapiens GN=BARHL1 PE=2 SV=1
Length = 327
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 34/48 (70%)
Query: 17 FRKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64
+KP++ RTAF+ QL +LE +FE+ Y+ +R +LA SL+LT+TQ
Sbjct: 175 LKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQV 222
>sp|P63156|BARH1_RAT BarH-like 1 homeobox protein OS=Rattus norvegicus GN=Barhl1 PE=2
SV=1
Length = 327
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 34/48 (70%)
Query: 17 FRKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64
+KP++ RTAF+ QL +LE +FE+ Y+ +R +LA SL+LT+TQ
Sbjct: 175 LKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQV 222
>sp|P63157|BARH1_MOUSE BarH-like 1 homeobox protein OS=Mus musculus GN=Barhl1 PE=2 SV=1
Length = 327
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 34/48 (70%)
Query: 17 FRKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64
+KP++ RTAF+ QL +LE +FE+ Y+ +R +LA SL+LT+TQ
Sbjct: 175 LKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQV 222
>sp|P19601|SAX1_CHICK Homeobox protein SAX-1 (Fragment) OS=Gallus gallus GN=SAX1 PE=2
SV=2
Length = 232
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%)
Query: 19 KPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
KP+R RTAF+ QL+ LE+ F Y+ ER LA SLSLTETQ
Sbjct: 64 KPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQ 108
>sp|Q15270|NKX11_HUMAN NK1 transcription factor-related protein 1 OS=Homo sapiens
GN=NKX1-1 PE=2 SV=2
Length = 411
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 31/46 (67%)
Query: 19 KPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64
KP+R RTAF+ QL+ LE+ F+ Y+ ER LA SLSLTETQ
Sbjct: 258 KPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQV 303
>sp|Q5TIS6|NOTO_MOUSE Homeobox protein notochord OS=Mus musculus GN=Noto PE=1 SV=1
Length = 240
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 29/47 (61%)
Query: 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64
R KR+RT F+ QL +LE F K H +VG ER QLA L LTE Q
Sbjct: 147 RHTKRVRTTFNLQQLQELEKVFAKQHNLVGKERAQLAARLHLTENQV 193
>sp|Q9UD57|NKX12_HUMAN NK1 transcription factor-related protein 2 OS=Homo sapiens
GN=NKX1-2 PE=2 SV=3
Length = 310
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%)
Query: 19 KPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
KP+R RTAF+ QL+ LE+ F Y+ ER LA SLSLTETQ
Sbjct: 162 KPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQ 206
>sp|P42580|NKX12_MOUSE NK1 transcription factor-related protein 2 OS=Mus musculus
GN=Nkx1-2 PE=1 SV=1
Length = 305
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%)
Query: 19 KPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
KP+R RTAF+ QL+ LE+ F Y+ ER LA SLSLTETQ
Sbjct: 155 KPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQ 199
>sp|Q9W7E8|KOZA_XENLA Homeobox protein koza OS=Xenopus laevis GN=koza PE=2 SV=1
Length = 213
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 29/43 (67%)
Query: 21 KRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
KR R AFS SQ+++LE F Y+ ER QLA+SL LTETQ
Sbjct: 103 KRSRAAFSHSQVIELERKFSSQKYLSAPERAQLAKSLKLTETQ 145
>sp|P20269|HM05_CAEEL Homeobox protein ceh-5 OS=Caenorhabditis elegans GN=ceh-5 PE=4
SV=4
Length = 134
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 2 ANGIRP--DIPGFLLQPFRKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSL 59
ANG +IP L +PKR RT F+ QL KLE +F + Y+ G+ R +LA+SL L
Sbjct: 17 ANGSEKMLEIPAKL--DLERPKRPRTVFTDEQLEKLEESFNTSGYLSGSTRAKLAESLGL 74
Query: 60 TETQ 63
++ Q
Sbjct: 75 SDNQ 78
>sp|Q9W769|VEX1_XENLA Homeobox protein vex1 OS=Xenopus laevis GN=vex1 PE=2 SV=1
Length = 285
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 22 RIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64
R RT FSP QL +LE +F++N Y+ +E+++L++ L L+ETQ
Sbjct: 133 RARTKFSPEQLEELERSFKENRYIGSSEKRRLSKVLKLSETQI 175
>sp|O88181|BARH2_RAT BarH-like 2 homeobox protein OS=Rattus norvegicus GN=Barhl2 PE=2
SV=1
Length = 384
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%)
Query: 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64
+KP++ RTAFS QL +LE +FE+ Y+ +R LA +L+LT+TQ
Sbjct: 227 KKPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQV 273
>sp|P70061|NKX32_XENLA Homeobox protein Nkx-3.2 OS=Xenopus laevis GN=nkx3-2 PE=2 SV=1
Length = 329
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 12 FLLQPFRKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
L P ++ KR R AFS +Q+ +LE F Y+ G ER LA SL LTETQ
Sbjct: 194 MLEPPKQRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQ 245
>sp|P22807|SLOU_DROME Homeobox protein slou OS=Drosophila melanogaster GN=slou PE=2 SV=1
Length = 659
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 30/45 (66%)
Query: 20 PKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64
P+R RTAF+ QL+ LE+ F+ Y+ ER LA SLSLTETQ
Sbjct: 545 PRRARTAFTYEQLVSLENKFKTTRYLSVCERLNLALSLSLTETQV 589
>sp|Q8VIB5|BARH2_MOUSE BarH-like 2 homeobox protein OS=Mus musculus GN=Barhl2 PE=2 SV=2
Length = 384
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%)
Query: 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64
+KP++ RTAFS QL +LE +FE+ Y+ +R LA +L+LT+TQ
Sbjct: 227 KKPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQV 273
>sp|Q504H8|HMX3_DANRE Homeobox protein HMX3 OS=Danio rerio GN=hmx3 PE=2 SV=1
Length = 297
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 11 GFLLQPFRKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
G +P RK K+ RT FS SQ+ +LE F+ Y+ +ER LA SL LTETQ
Sbjct: 162 GADKKPCRK-KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQ 213
>sp|Q9NY43|BARH2_HUMAN BarH-like 2 homeobox protein OS=Homo sapiens GN=BARHL2 PE=2 SV=2
Length = 387
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%)
Query: 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64
+KP++ RTAFS QL +LE +FE+ Y+ +R LA +L+LT+TQ
Sbjct: 230 KKPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQV 276
>sp|Q9QZW9|MNX1_MOUSE Motor neuron and pancreas homeobox protein 1 OS=Mus musculus
GN=Mnx1 PE=2 SV=2
Length = 404
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 2 ANGIRPDIPGFLLQP----FRKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSL 57
A I P +P F + K +R RTAF+ QLL+LEH F+ N Y+ +R ++A SL
Sbjct: 219 AGMILPKMPDFSCEAQSNLLGKCRRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSL 278
Query: 58 SLTETQF 64
LTETQ
Sbjct: 279 MLTETQV 285
>sp|A8MTQ0|NOTO_HUMAN Homeobox protein notochord OS=Homo sapiens GN=NOTO PE=2 SV=2
Length = 251
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%)
Query: 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
R+ KR+RT F+ QL +LE F K H +VG +R QLA L LTE Q
Sbjct: 154 RQQKRVRTMFNLEQLEELEKVFAKQHNLVGKKRAQLAARLKLTENQ 199
>sp|P22809|BAGP_DROME Homeobox protein bagpipe OS=Drosophila melanogaster GN=bap PE=2
SV=3
Length = 382
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%)
Query: 21 KRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64
KR R AFS +Q+ +LE F + Y+ G ER ++A+SL LTETQ
Sbjct: 176 KRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQV 219
>sp|Q90XP0|HMX3A_ORYLA Homeobox protein HMX3-A OS=Oryzias latipes GN=hmx3a PE=2 SV=1
Length = 303
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 15 QPFRKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
+P RK K+ RT FS SQ+ +LE F+ Y+ +ER LA SL LTETQ
Sbjct: 171 KPCRK-KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQ 218
>sp|P50219|MNX1_HUMAN Motor neuron and pancreas homeobox protein 1 OS=Homo sapiens
GN=MNX1 PE=1 SV=3
Length = 401
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 2 ANGIRPDIPGFLLQP----FRKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSL 57
A I P +P F Q K +R RTAF+ QLL+LEH F+ N Y+ +R ++A SL
Sbjct: 219 AGMILPKMPDFNSQAQSNLLGKCRRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSL 278
Query: 58 SLTETQF 64
LTETQ
Sbjct: 279 MLTETQV 285
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,526,857
Number of Sequences: 539616
Number of extensions: 619875
Number of successful extensions: 2151
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1440
Number of HSP's gapped (non-prelim): 712
length of query: 64
length of database: 191,569,459
effective HSP length: 36
effective length of query: 28
effective length of database: 172,143,283
effective search space: 4820011924
effective search space used: 4820011924
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)