Query psy13127
Match_columns 64
No_of_seqs 120 out of 1013
Neff 9.0
Searched_HMMs 29240
Date Fri Aug 16 20:17:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmt_A Homeobox protein BARH-l 99.6 9.3E-16 3.2E-20 77.0 6.6 49 16-64 13-61 (80)
2 2da3_A Alpha-fetoprotein enhan 99.6 2.2E-15 7.5E-20 75.5 5.0 49 16-64 13-61 (80)
3 1wh5_A ZF-HD homeobox family p 99.6 6.5E-15 2.2E-19 74.1 6.6 47 18-64 15-65 (80)
4 1wh7_A ZF-HD homeobox family p 99.6 5.8E-15 2E-19 74.3 6.0 48 16-64 13-65 (80)
5 1puf_A HOX-1.7, homeobox prote 99.6 9.8E-15 3.3E-19 72.8 5.8 50 15-64 8-57 (77)
6 2cra_A Homeobox protein HOX-B1 99.6 7.9E-15 2.7E-19 71.9 5.1 47 18-64 5-51 (70)
7 2kt0_A Nanog, homeobox protein 99.5 2.7E-14 9.1E-19 72.1 6.8 48 17-64 19-66 (84)
8 2da2_A Alpha-fetoprotein enhan 99.5 1.5E-14 5.3E-19 70.8 5.3 47 18-64 5-51 (70)
9 2djn_A Homeobox protein DLX-5; 99.5 1.4E-14 4.9E-19 71.0 5.0 47 18-64 5-51 (70)
10 2dmu_A Homeobox protein goosec 99.5 1.4E-14 4.8E-19 71.0 4.9 47 18-64 5-51 (70)
11 2da1_A Alpha-fetoprotein enhan 99.5 1.1E-14 3.8E-19 71.3 4.0 47 18-64 5-51 (70)
12 1bw5_A ISL-1HD, insulin gene e 99.5 1.7E-14 5.8E-19 70.0 4.3 46 19-64 2-47 (66)
13 2dms_A Homeobox protein OTX2; 99.5 3.1E-14 1.1E-18 71.4 5.4 47 18-64 5-51 (80)
14 2hdd_A Protein (engrailed home 99.5 1.3E-14 4.3E-19 69.5 3.7 45 20-64 3-47 (61)
15 2h1k_A IPF-1, pancreatic and d 99.5 1.6E-14 5.3E-19 69.6 4.0 46 19-64 2-47 (63)
16 2vi6_A Homeobox protein nanog; 99.5 1.3E-14 4.4E-19 69.7 3.6 46 19-64 2-47 (62)
17 1ig7_A Homeotic protein MSX-1; 99.5 2.4E-14 8.3E-19 67.8 4.4 44 21-64 1-44 (58)
18 2l7z_A Homeobox protein HOX-A1 99.5 4.3E-14 1.5E-18 69.8 5.3 47 18-64 5-51 (73)
19 2dmq_A LIM/homeobox protein LH 99.5 4.8E-14 1.7E-18 70.6 5.4 47 18-64 5-51 (80)
20 1akh_A Protein (mating-type pr 99.5 1.6E-14 5.6E-19 69.0 3.3 47 18-64 3-49 (61)
21 2cue_A Paired box protein PAX6 99.5 4.4E-14 1.5E-18 70.8 5.0 47 18-64 5-51 (80)
22 1nk2_P Homeobox protein VND; h 99.5 7.2E-14 2.5E-18 69.6 5.6 47 18-64 7-53 (77)
23 2e1o_A Homeobox protein PRH; D 99.5 6.5E-14 2.2E-18 68.6 5.3 47 18-64 5-51 (70)
24 3a01_A Homeodomain-containing 99.5 1.1E-13 3.8E-18 71.2 6.4 47 18-64 15-61 (93)
25 1wi3_A DNA-binding protein SAT 99.5 4.9E-14 1.7E-18 68.7 4.7 48 17-64 4-52 (71)
26 2m0c_A Homeobox protein arista 99.5 7.3E-14 2.5E-18 69.1 5.3 47 18-64 7-53 (75)
27 1jgg_A Segmentation protein EV 99.5 3.6E-14 1.2E-18 67.7 4.0 44 21-64 2-45 (60)
28 1fjl_A Paired protein; DNA-bin 99.5 5.4E-14 1.9E-18 70.6 4.4 48 17-64 15-62 (81)
29 3rkq_A Homeobox protein NKX-2. 99.5 5.2E-14 1.8E-18 66.5 4.1 45 20-64 2-46 (58)
30 1zq3_P PRD-4, homeotic bicoid 99.5 5.1E-14 1.8E-18 68.7 4.2 45 20-64 2-46 (68)
31 3nar_A ZHX1, zinc fingers and 99.5 4.1E-14 1.4E-18 73.1 4.0 48 17-64 22-69 (96)
32 1ftt_A TTF-1 HD, thyroid trans 99.5 6.4E-14 2.2E-18 68.4 4.3 45 20-64 2-46 (68)
33 1b8i_A Ultrabithorax, protein 99.5 7.9E-14 2.7E-18 70.1 4.5 47 18-64 18-64 (81)
34 2k40_A Homeobox expressed in E 99.5 7.6E-14 2.6E-18 67.8 4.1 45 20-64 1-45 (67)
35 1ahd_P Antennapedia protein mu 99.5 4.3E-14 1.5E-18 69.0 3.2 45 20-64 2-46 (68)
36 1yz8_P Pituitary homeobox 2; D 99.4 2.8E-14 9.6E-19 69.6 1.8 46 19-64 2-47 (68)
37 2r5y_A Homeotic protein sex co 99.4 1.2E-13 4.1E-18 70.3 4.1 47 18-64 26-72 (88)
38 2da4_A Hypothetical protein DK 99.4 7.9E-14 2.7E-18 69.9 2.8 47 18-64 6-56 (80)
39 2ecc_A Homeobox and leucine zi 99.4 2.8E-13 9.5E-18 67.5 4.2 42 23-64 6-47 (76)
40 3a02_A Homeobox protein arista 99.4 2.1E-13 7E-18 65.0 3.4 42 23-64 2-43 (60)
41 1b72_A Protein (homeobox prote 99.4 2.4E-13 8.2E-18 70.3 3.7 47 18-64 32-78 (97)
42 1x2n_A Homeobox protein pknox1 99.4 6.5E-13 2.2E-17 65.5 5.1 47 18-64 5-54 (73)
43 2ly9_A Zinc fingers and homeob 99.4 5.2E-13 1.8E-17 65.9 4.4 46 19-64 5-50 (74)
44 1uhs_A HOP, homeodomain only p 99.4 4.6E-13 1.6E-17 65.9 4.2 44 21-64 2-46 (72)
45 2hi3_A Homeodomain-only protei 99.4 5.2E-13 1.8E-17 65.9 4.3 45 20-64 2-47 (73)
46 1du6_A PBX1, homeobox protein 99.4 5.3E-13 1.8E-17 64.3 3.4 46 19-64 2-50 (64)
47 2dn0_A Zinc fingers and homeob 99.4 1E-12 3.5E-17 65.3 4.4 45 20-64 8-52 (76)
48 2cuf_A FLJ21616 protein; homeo 99.4 9.5E-13 3.2E-17 67.8 4.3 41 18-58 5-45 (95)
49 2da5_A Zinc fingers and homeob 99.3 2.3E-12 8E-17 63.9 5.1 43 22-64 9-51 (75)
50 1puf_B PRE-B-cell leukemia tra 99.3 1.4E-12 4.6E-17 64.3 4.2 45 20-64 1-48 (73)
51 1lfb_A Liver transcription fac 99.3 1E-12 3.5E-17 68.4 3.4 40 17-56 6-45 (99)
52 3a03_A T-cell leukemia homeobo 99.3 1.2E-12 4E-17 61.7 3.3 40 25-64 2-41 (56)
53 1au7_A Protein PIT-1, GHF-1; c 99.3 1.8E-12 6.2E-17 71.3 4.4 47 18-64 85-131 (146)
54 1e3o_C Octamer-binding transcr 99.3 1.3E-12 4.4E-17 72.8 3.8 47 18-64 99-145 (160)
55 3d1n_I POU domain, class 6, tr 99.3 2.9E-12 9.9E-17 70.7 5.0 47 18-64 91-137 (151)
56 2da6_A Hepatocyte nuclear fact 99.3 3.3E-12 1.1E-16 66.7 4.8 40 18-57 4-43 (102)
57 2dmn_A Homeobox protein TGIF2L 99.3 4.9E-12 1.7E-16 63.8 5.3 47 18-64 5-54 (83)
58 1mnm_C Protein (MAT alpha-2 tr 99.3 3.9E-12 1.4E-16 64.5 4.4 47 18-64 25-74 (87)
59 2xsd_C POU domain, class 3, tr 99.3 2.1E-12 7.1E-17 72.2 3.6 48 17-64 96-143 (164)
60 1b72_B Protein (PBX1); homeodo 99.3 3.4E-12 1.2E-16 64.6 3.9 44 21-64 2-48 (87)
61 1k61_A Mating-type protein alp 99.3 4.8E-12 1.6E-16 60.2 4.0 42 23-64 1-45 (60)
62 2d5v_A Hepatocyte nuclear fact 99.3 4.3E-12 1.5E-16 70.7 3.8 47 18-64 95-141 (164)
63 3l1p_A POU domain, class 5, tr 99.2 5.9E-12 2E-16 69.8 3.4 47 18-64 94-140 (155)
64 2dmp_A Zinc fingers and homeob 99.2 2.9E-11 1E-15 61.6 5.7 39 26-64 19-57 (89)
65 2ecb_A Zinc fingers and homeob 99.2 3.9E-11 1.3E-15 61.3 5.7 39 26-64 17-55 (89)
66 1le8_B Mating-type protein alp 99.2 1.3E-11 4.5E-16 62.2 4.0 43 22-64 4-49 (83)
67 2cqx_A LAG1 longevity assuranc 99.2 1.3E-11 4.5E-16 60.8 2.2 45 20-64 8-53 (72)
68 3nau_A Zinc fingers and homeob 99.1 2.6E-11 8.8E-16 58.8 3.0 37 28-64 12-48 (66)
69 2e19_A Transcription factor 8; 99.1 1E-10 3.5E-15 56.4 3.6 41 24-64 7-47 (64)
70 1ic8_A Hepatocyte nuclear fact 99.1 1.7E-11 6E-16 70.1 1.0 41 18-58 113-153 (194)
71 2h8r_A Hepatocyte nuclear fact 99.1 1E-10 3.5E-15 68.0 3.6 42 17-58 139-180 (221)
72 2l9r_A Homeobox protein NKX-3. 99.1 1.7E-10 6E-15 56.4 3.8 41 24-64 8-48 (69)
73 3k2a_A Homeobox protein MEIS2; 98.9 1.5E-09 5E-14 52.7 3.3 39 26-64 4-45 (67)
74 1x2m_A LAG1 longevity assuranc 98.9 1.1E-09 3.7E-14 52.9 2.5 35 30-64 10-45 (64)
75 1mh3_A Maltose binding-A1 home 98.6 3.9E-08 1.3E-12 60.0 3.1 43 22-64 367-409 (421)
76 2da7_A Zinc finger homeobox pr 98.4 1.5E-07 5.3E-12 45.9 2.8 36 29-64 14-49 (71)
77 2lk2_A Homeobox protein TGIF1; 98.4 2.2E-07 7.6E-12 47.3 3.1 40 25-64 10-52 (89)
78 2rgt_A Fusion of LIM/homeobox 89.5 0.0013 4.3E-08 36.3 -7.0 30 18-47 134-163 (169)
79 2elh_A CG11849-PA, LD40883P; s 78.0 2.8 9.6E-05 20.2 3.0 38 20-62 16-53 (87)
80 2glo_A Brinker CG9653-PA; prot 71.9 5.2 0.00018 17.7 2.9 38 24-62 3-40 (59)
81 1hlv_A CENP-B, major centromer 70.6 7.1 0.00024 19.8 3.6 37 23-62 4-40 (131)
82 2ys9_A Homeobox and leucine zi 68.5 2.9 9.9E-05 20.1 1.6 32 33-64 19-50 (70)
83 1iuf_A Centromere ABP1 protein 61.0 16 0.00055 19.1 4.0 40 21-63 6-52 (144)
84 1tc3_C Protein (TC3 transposas 59.6 8.4 0.00029 15.4 2.5 32 26-62 5-36 (51)
85 3ulq_B Transcriptional regulat 55.3 11 0.00037 18.3 2.4 39 19-63 22-60 (90)
86 3i5g_B Myosin regulatory light 48.7 27 0.00094 18.1 5.6 39 23-61 6-49 (153)
87 1p4w_A RCSB; solution structur 46.6 22 0.00075 17.6 2.8 34 24-63 32-65 (99)
88 2o8x_A Probable RNA polymerase 46.6 12 0.00041 16.5 1.6 32 27-63 16-47 (70)
89 1ku3_A Sigma factor SIGA; heli 45.9 12 0.0004 17.1 1.6 35 26-63 10-46 (73)
90 3hug_A RNA polymerase sigma fa 44.7 12 0.00043 17.8 1.6 31 27-62 38-68 (92)
91 2qko_A Possible transcriptiona 40.3 15 0.00051 19.6 1.7 30 32-62 34-63 (215)
92 2p7v_B Sigma-70, RNA polymeras 40.0 13 0.00043 16.7 1.1 36 27-63 6-41 (68)
93 3i9v_2 NADH-quinone oxidoreduc 40.0 20 0.00068 19.9 2.1 24 41-64 37-60 (181)
94 3h0d_A CTSR; protein DNA compl 39.6 8.1 0.00028 21.3 0.5 16 49-64 26-41 (155)
95 1jko_C HIN recombinase, DNA-in 38.7 16 0.00056 14.7 1.4 31 27-62 6-36 (52)
96 2ksn_A Ubiquitin domain-contai 36.5 52 0.0018 17.7 6.0 26 24-49 30-57 (137)
97 4h62_V Mediator of RNA polymer 36.1 24 0.0008 13.7 1.7 14 24-37 6-19 (31)
98 3o48_A Mitochondria fission 1 36.1 51 0.0018 17.6 4.0 34 24-57 15-50 (134)
99 1fse_A GERE; helix-turn-helix 34.9 27 0.00094 15.4 1.9 33 24-62 9-41 (74)
100 1je8_A Nitrate/nitrite respons 34.8 26 0.00089 16.4 1.9 35 23-63 18-52 (82)
101 2gqb_A Conserved hypothetical 34.6 31 0.0011 18.4 2.2 18 44-61 80-97 (130)
102 3c57_A Two component transcrip 34.5 34 0.0011 16.5 2.3 33 25-63 26-58 (95)
103 2lhi_A Calmodulin, serine/thre 33.9 46 0.0016 17.6 2.9 38 24-61 2-44 (176)
104 1tty_A Sigma-A, RNA polymerase 32.7 26 0.00089 16.5 1.7 34 27-63 19-54 (87)
105 2jn6_A Protein CGL2762, transp 32.2 45 0.0016 15.8 2.6 35 24-62 3-38 (97)
106 2v79_A DNA replication protein 32.2 39 0.0013 17.7 2.4 34 27-63 30-67 (135)
107 3mzy_A RNA polymerase sigma-H 30.0 25 0.00087 17.8 1.5 15 49-63 126-140 (164)
108 1s7o_A Hypothetical UPF0122 pr 29.5 33 0.0011 17.3 1.8 32 26-62 22-53 (113)
109 1x3u_A Transcriptional regulat 27.6 30 0.001 15.6 1.4 30 27-62 17-46 (79)
110 1u78_A TC3 transposase, transp 27.3 56 0.0019 16.2 2.5 33 25-62 5-37 (141)
111 2vn2_A DNAD, chromosome replic 26.8 66 0.0022 16.4 2.7 35 26-63 29-67 (128)
112 1xsv_A Hypothetical UPF0122 pr 26.7 38 0.0013 17.0 1.7 31 27-62 26-56 (113)
113 3fmy_A HTH-type transcriptiona 26.3 53 0.0018 14.7 2.5 30 26-62 10-39 (73)
114 1fi6_A EH domain protein REPS1 26.0 42 0.0014 15.7 1.7 34 27-60 3-41 (92)
115 2pmy_A RAS and EF-hand domain- 25.7 22 0.00076 16.5 0.7 39 23-61 17-60 (91)
116 2x48_A CAG38821; archeal virus 25.1 35 0.0012 14.2 1.3 29 29-62 18-46 (55)
117 2d1h_A ST1889, 109AA long hypo 24.3 48 0.0017 15.5 1.8 34 26-62 18-51 (109)
118 1rp3_A RNA polymerase sigma fa 24.3 44 0.0015 18.1 1.8 32 27-63 188-219 (239)
119 2rnj_A Response regulator prot 22.8 45 0.0015 15.7 1.5 33 24-62 27-59 (91)
120 1or7_A Sigma-24, RNA polymeras 22.7 49 0.0017 17.4 1.8 14 50-63 159-172 (194)
121 2jpc_A SSRB; DNA binding prote 22.5 17 0.00057 15.6 -0.1 14 50-63 16-29 (61)
122 3u0k_A Rcamp; fluorescent prot 22.1 1.6E+02 0.0056 18.8 4.3 38 23-60 292-334 (440)
123 2lmt_A Calmodulin-related prot 21.5 51 0.0017 16.5 1.6 34 26-59 3-41 (148)
124 1xwr_A Regulatory protein CII; 20.7 42 0.0014 16.8 1.1 16 49-64 25-40 (97)
125 3t76_A VANU, transcriptional r 20.3 86 0.0029 14.9 4.1 23 40-62 58-80 (88)
No 1
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=9.3e-16 Score=77.02 Aligned_cols=49 Identities=41% Similarity=0.604 Sum_probs=45.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 16 PFRKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 16 ~~~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
..++.++.|+.||..|+..||..|..++||+..++.+||..|||++.||
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV 61 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQV 61 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHe
Confidence 4467888999999999999999999999999999999999999999875
No 2
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.59 E-value=2.2e-15 Score=75.46 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=45.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 16 PFRKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 16 ~~~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
...+.++.|+.||..|+..||..|..++||+..++.+||..|||++.||
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV 61 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVV 61 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHh
Confidence 4467888999999999999999999999999999999999999999875
No 3
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.59 E-value=6.5e-15 Score=74.06 Aligned_cols=47 Identities=17% Similarity=0.132 Sum_probs=44.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 18 RKPKRIRTAFSPSQLLKLEHAFEK----NHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 18 ~~~rr~Rt~~t~~q~~~Le~~F~~----~~~~~~~~r~~La~~l~l~~~qV 64 (64)
+++++.||.||..|+..||..|+. ++||+..++.+||..|||++.||
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~V 65 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVL 65 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccc
Confidence 567889999999999999999999 99999999999999999999875
No 4
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.58 E-value=5.8e-15 Score=74.30 Aligned_cols=48 Identities=21% Similarity=0.198 Sum_probs=44.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 16 PFRKPKRIRTAFSPSQLLKLEHAFEK-----NHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 16 ~~~~~rr~Rt~~t~~q~~~Le~~F~~-----~~~~~~~~r~~La~~l~l~~~qV 64 (64)
...+++|.||.||..|+..|| .|.. ++||+..++.+||..|||++.||
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qV 65 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVL 65 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcc
Confidence 346778899999999999999 8999 99999999999999999999875
No 5
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.56 E-value=9.8e-15 Score=72.79 Aligned_cols=50 Identities=32% Similarity=0.440 Sum_probs=46.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 15 QPFRKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 15 ~~~~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
...++.++.|+.||..|+..||..|..++||+..++.+||..|||++.||
T Consensus 8 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV 57 (77)
T 1puf_A 8 LHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQV 57 (77)
T ss_dssp CCCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHH
T ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHH
Confidence 34467888999999999999999999999999999999999999999875
No 6
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=7.9e-15 Score=71.94 Aligned_cols=47 Identities=26% Similarity=0.506 Sum_probs=44.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 18 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
.+.++.|+.||..|+..||..|..++||+..++.+||..|||++.||
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV 51 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQI 51 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHh
Confidence 56788999999999999999999999999999999999999999875
No 7
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.55 E-value=2.7e-14 Score=72.12 Aligned_cols=48 Identities=29% Similarity=0.428 Sum_probs=44.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 17 FRKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 17 ~~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
..+.++.|+.||..|+..||..|..++||+..++..||..|||++.||
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 66 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQV 66 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHH
Confidence 367788999999999999999999999999999999999999999875
No 8
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.54 E-value=1.5e-14 Score=70.83 Aligned_cols=47 Identities=30% Similarity=0.361 Sum_probs=44.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 18 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
.+.++.|+.||..|+..||..|..++||+..++..||..|||++.||
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV 51 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVI 51 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHh
Confidence 56788999999999999999999999999999999999999999875
No 9
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.4e-14 Score=71.01 Aligned_cols=47 Identities=40% Similarity=0.556 Sum_probs=44.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 18 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
.+.++.|+.||..|+..||..|..++||+..++.+||..+||++.||
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 51 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQV 51 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHH
Confidence 46788999999999999999999999999999999999999999875
No 10
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.4e-14 Score=71.02 Aligned_cols=47 Identities=34% Similarity=0.478 Sum_probs=44.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 18 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
.+.++.|+.||..|+..||..|..++||+..++.+||..|||++.||
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV 51 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKV 51 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHe
Confidence 45778899999999999999999999999999999999999999875
No 11
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.52 E-value=1.1e-14 Score=71.34 Aligned_cols=47 Identities=26% Similarity=0.285 Sum_probs=44.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 18 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
++.++.|+.||..|+..||..|+.++||+..++..||..+||++.||
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV 51 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVI 51 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHH
Confidence 56788999999999999999999999999999999999999999875
No 12
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.51 E-value=1.7e-14 Score=70.01 Aligned_cols=46 Identities=24% Similarity=0.314 Sum_probs=43.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 19 KPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 19 ~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
++++.|+.||..|+..||..|..++||+..++..||..+||++.||
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 47 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVI 47 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHH
Confidence 4678899999999999999999999999999999999999999875
No 13
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=3.1e-14 Score=71.38 Aligned_cols=47 Identities=32% Similarity=0.402 Sum_probs=44.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 18 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
++.++.|+.||..|+..||..|..++||+..++.+||..|||++.||
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 51 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRV 51 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHh
Confidence 56788999999999999999999999999999999999999999875
No 14
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.51 E-value=1.3e-14 Score=69.51 Aligned_cols=45 Identities=44% Similarity=0.678 Sum_probs=39.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 20 PKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 20 ~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
.++.|+.||..|+..||..|..++||+..++.+||..+||++.||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 47 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQI 47 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHH
Confidence 577899999999999999999999999999999999999999875
No 15
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.51 E-value=1.6e-14 Score=69.61 Aligned_cols=46 Identities=43% Similarity=0.603 Sum_probs=41.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 19 KPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 19 ~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
+.++.|+.||..|+..||..|..++||+..++..||..+||++.||
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV 47 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHI 47 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHh
Confidence 3677899999999999999999999999999999999999999875
No 16
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.51 E-value=1.3e-14 Score=69.65 Aligned_cols=46 Identities=30% Similarity=0.493 Sum_probs=38.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 19 KPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 19 ~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
+.++.|+.||..|+..||..|..++||+..++.+||..+||++.||
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV 47 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQV 47 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHh
Confidence 4677899999999999999999999999999999999999999875
No 17
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.51 E-value=2.4e-14 Score=67.81 Aligned_cols=44 Identities=48% Similarity=0.699 Sum_probs=41.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 21 KRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 21 rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
++.|+.||..|+..||..|..++||+..++.+||..+||++.||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 44 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQV 44 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHh
Confidence 56899999999999999999999999999999999999999875
No 18
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.50 E-value=4.3e-14 Score=69.83 Aligned_cols=47 Identities=21% Similarity=0.481 Sum_probs=44.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 18 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
.+.++.|+.||..|+..||..|..++||+..++.+||..+||++.||
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV 51 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQV 51 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHH
Confidence 56788999999999999999999999999999999999999999875
No 19
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=4.8e-14 Score=70.59 Aligned_cols=47 Identities=36% Similarity=0.429 Sum_probs=44.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 18 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
.+.++.|+.||..|+..||..|..++||+..++..||..|||++.||
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 51 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVL 51 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHh
Confidence 46788999999999999999999999999999999999999999875
No 20
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.49 E-value=1.6e-14 Score=69.03 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=36.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 18 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
++.++.|+.||..|+..||..|..++||+..++..||..+||++.||
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV 49 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQV 49 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHH
Confidence 45778899999999999999999999999999999999999999875
No 21
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.49 E-value=4.4e-14 Score=70.83 Aligned_cols=47 Identities=34% Similarity=0.526 Sum_probs=44.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 18 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
.+.++.|+.||..|+..||..|..++||+..++..||..|||++.||
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV 51 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARI 51 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHh
Confidence 45778899999999999999999999999999999999999999875
No 22
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.49 E-value=7.2e-14 Score=69.61 Aligned_cols=47 Identities=34% Similarity=0.549 Sum_probs=44.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 18 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
++.++.|+.||..|+..||..|..++||+..++..||..|||++.||
T Consensus 7 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 53 (77)
T 1nk2_P 7 NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQV 53 (77)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHH
Confidence 56778899999999999999999999999999999999999999875
No 23
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.49 E-value=6.5e-14 Score=68.64 Aligned_cols=47 Identities=38% Similarity=0.523 Sum_probs=43.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 18 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
.+.++.|+.||..|+..||..|..++||+..++.+||..+||++.||
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 51 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQV 51 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHh
Confidence 35667899999999999999999999999999999999999999875
No 24
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.49 E-value=1.1e-13 Score=71.18 Aligned_cols=47 Identities=40% Similarity=0.616 Sum_probs=44.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 18 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
.+.++.||.||..|+..||..|..++||+..++..||..+||++.||
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV 61 (93)
T 3a01_A 15 PKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQV 61 (93)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHH
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhc
Confidence 56778899999999999999999999999999999999999999875
No 25
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.49 E-value=4.9e-14 Score=68.72 Aligned_cols=48 Identities=21% Similarity=0.142 Sum_probs=44.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 17 FRKPKRIRTAFSPSQLLKLEHAFEK-NHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 17 ~~~~rr~Rt~~t~~q~~~Le~~F~~-~~~~~~~~r~~La~~l~l~~~qV 64 (64)
.+.++|.||.|+.+|+..|+..|+. ++||+...|..||..+||++.+|
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~I 52 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTI 52 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHH
Confidence 3578889999999999999999999 99999999999999999998764
No 26
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.48 E-value=7.3e-14 Score=69.07 Aligned_cols=47 Identities=43% Similarity=0.538 Sum_probs=44.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 18 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
+++++.|+.||..|+..||..|..++||+..++.+||..|||++.||
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 53 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARV 53 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHH
Confidence 56788899999999999999999999999999999999999998775
No 27
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.48 E-value=3.6e-14 Score=67.70 Aligned_cols=44 Identities=43% Similarity=0.623 Sum_probs=41.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 21 KRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 21 rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
++.|+.||..|+..||..|..++||+..++.+||..+||++.||
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 45 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTI 45 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHH
Confidence 57899999999999999999999999999999999999999875
No 28
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.47 E-value=5.4e-14 Score=70.62 Aligned_cols=48 Identities=48% Similarity=0.588 Sum_probs=43.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 17 FRKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 17 ~~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
.++.++.|+.||..|+..||..|..++||+..++..||..+||++.||
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV 62 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARI 62 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHH
Confidence 367788999999999999999999999999999999999999999875
No 29
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.47 E-value=5.2e-14 Score=66.50 Aligned_cols=45 Identities=40% Similarity=0.611 Sum_probs=42.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 20 PKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 20 ~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
.++.|+.||..|+..||..|..++||+..++.+||..+||++.||
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 46 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQV 46 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHH
Confidence 457899999999999999999999999999999999999998875
No 30
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.47 E-value=5.1e-14 Score=68.70 Aligned_cols=45 Identities=33% Similarity=0.585 Sum_probs=42.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 20 PKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 20 ~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
+++.|+.||..|+..||..|..++||+..++..||..|||++.||
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 46 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQV 46 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHh
Confidence 567899999999999999999999999999999999999999875
No 31
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.47 E-value=4.1e-14 Score=73.13 Aligned_cols=48 Identities=23% Similarity=0.245 Sum_probs=41.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 17 FRKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 17 ~~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
....++.|+.||..|+..||..|..++||+..++.+||..|||++.||
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV 69 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDI 69 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHe
Confidence 356678899999999999999999999999999999999999999875
No 32
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.47 E-value=6.4e-14 Score=68.35 Aligned_cols=45 Identities=36% Similarity=0.587 Sum_probs=42.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 20 PKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 20 ~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
.++.|+.||..|+..||..|..++||+..++..||..+||++.+|
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV 46 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQV 46 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHh
Confidence 467899999999999999999999999999999999999999875
No 33
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.46 E-value=7.9e-14 Score=70.10 Aligned_cols=47 Identities=38% Similarity=0.569 Sum_probs=39.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 18 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
...++.|+.||..|+..||..|..++||+..++.+||..|||++.||
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV 64 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQI 64 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHH
Confidence 56778899999999999999999999999999999999999999875
No 34
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.46 E-value=7.6e-14 Score=67.84 Aligned_cols=45 Identities=36% Similarity=0.393 Sum_probs=42.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 20 PKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 20 ~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
+++.|+.||..|+..||..|..++||+..++..||..+||++.||
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 45 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRI 45 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHH
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHh
Confidence 367899999999999999999999999999999999999999875
No 35
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.45 E-value=4.3e-14 Score=68.99 Aligned_cols=45 Identities=40% Similarity=0.555 Sum_probs=42.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 20 PKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 20 ~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
+++.|+.||..|+..||..|..++||+..++.+||..+||++.||
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 46 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQI 46 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhh
Confidence 467899999999999999999999999999999999999999875
No 36
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.44 E-value=2.8e-14 Score=69.60 Aligned_cols=46 Identities=35% Similarity=0.517 Sum_probs=43.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 19 KPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 19 ~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
++++.|+.||..|+..||..|..++||+..++..||..+||++.||
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 47 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARV 47 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHH
Confidence 4678899999999999999999999999999999999999999875
No 37
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.44 E-value=1.2e-13 Score=70.34 Aligned_cols=47 Identities=40% Similarity=0.580 Sum_probs=40.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 18 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
.+.++.|+.||..|+..||..|..++||+..++.+||..|||++.||
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 72 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQI 72 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHH
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHh
Confidence 56788899999999999999999999999999999999999999875
No 38
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=7.9e-14 Score=69.88 Aligned_cols=47 Identities=19% Similarity=0.214 Sum_probs=44.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHcCCCCcCC
Q psy13127 18 RKPKRIRTAFSPSQLLKLEHAFEKN----HYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 18 ~~~rr~Rt~~t~~q~~~Le~~F~~~----~~~~~~~r~~La~~l~l~~~qV 64 (64)
++.++.||.||..|+..||..|+.+ +||+..++.+||..|||++.||
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV 56 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIV 56 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHh
Confidence 5678899999999999999999999 9999999999999999999875
No 39
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.41 E-value=2.8e-13 Score=67.51 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=39.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 23 IRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 23 ~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
+|..||..|+..|+..|..++||+..++.+||..+||++.||
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qI 47 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEI 47 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHh
Confidence 566799999999999999999999999999999999999876
No 40
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.40 E-value=2.1e-13 Score=65.03 Aligned_cols=42 Identities=36% Similarity=0.508 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 23 IRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 23 ~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
+|+.||..|+..||..|..++||+..++.+||..+||++.||
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 43 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARI 43 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHH
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHH
Confidence 689999999999999999999999999999999999999875
No 41
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.39 E-value=2.4e-13 Score=70.31 Aligned_cols=47 Identities=40% Similarity=0.613 Sum_probs=40.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 18 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
.+.++.|+.||..|+..||..|..++||+..++.+||..|||++.||
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV 78 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQV 78 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHh
Confidence 46678899999999999999999999999999999999999999875
No 42
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.39 E-value=6.5e-13 Score=65.46 Aligned_cols=47 Identities=21% Similarity=0.179 Sum_probs=43.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 18 RKPKRIRTAFSPSQLLKLEHAFEK---NHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 18 ~~~rr~Rt~~t~~q~~~Le~~F~~---~~~~~~~~r~~La~~l~l~~~qV 64 (64)
++.++.|+.|+..|+..|+..|.. ++||+..++.+||..+||++.||
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV 54 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQV 54 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 467788999999999999999987 99999999999999999999875
No 43
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.39 E-value=5.2e-13 Score=65.92 Aligned_cols=46 Identities=24% Similarity=0.286 Sum_probs=42.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 19 KPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 19 ~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
..++.|+.||..|+..||..|+.++||+..++.+||..+||++.||
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 50 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEI 50 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHH
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHe
Confidence 3567899999999999999999999999999999999999998775
No 44
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.39 E-value=4.6e-13 Score=65.89 Aligned_cols=44 Identities=25% Similarity=0.155 Sum_probs=41.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 21 KRIRTAFSPSQLLKLEHAFEK-NHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 21 rr~Rt~~t~~q~~~Le~~F~~-~~~~~~~~r~~La~~l~l~~~qV 64 (64)
.++|+.||..|+..||..|.. ++||+..++..||..+||++.||
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV 46 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQT 46 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHh
Confidence 467999999999999999996 99999999999999999999875
No 45
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.38 E-value=5.2e-13 Score=65.87 Aligned_cols=45 Identities=24% Similarity=0.144 Sum_probs=41.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 20 PKRIRTAFSPSQLLKLEHAFEK-NHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 20 ~rr~Rt~~t~~q~~~Le~~F~~-~~~~~~~~r~~La~~l~l~~~qV 64 (64)
..+.|+.||..|+..||..|.. ++||+..++.+||..+||++.||
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV 47 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQT 47 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHH
Confidence 3567999999999999999995 99999999999999999999875
No 46
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.36 E-value=5.3e-13 Score=64.26 Aligned_cols=46 Identities=17% Similarity=0.163 Sum_probs=42.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 19 KPKRIRTAFSPSQLLKLEHAF---EKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 19 ~~rr~Rt~~t~~q~~~Le~~F---~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
.+++.|+.|+..|+..|+..| ..++||+..++..||..+||++.||
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV 50 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQV 50 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHH
Confidence 467789999999999999999 8999999999999999999999875
No 47
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1e-12 Score=65.27 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=41.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 20 PKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 20 ~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
+...|+.||..|+..||..|..++||+..++.+||..+||++.||
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV 52 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREV 52 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHh
Confidence 445689999999999999999999999999999999999999875
No 48
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.35 E-value=9.5e-13 Score=67.82 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=39.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcC
Q psy13127 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLS 58 (64)
Q Consensus 18 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~ 58 (64)
++.++.|+.|+..|+..||..|+.++||+..++.+||..+|
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~ 45 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACN 45 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHC
Confidence 56788999999999999999999999999999999999999
No 49
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=2.3e-12 Score=63.85 Aligned_cols=43 Identities=23% Similarity=0.310 Sum_probs=39.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 22 RIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 22 r~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
++|+.||..|+..||..|..++||+..++..||..+||++.||
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV 51 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREI 51 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHH
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHh
Confidence 3566799999999999999999999999999999999999875
No 50
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.34 E-value=1.4e-12 Score=64.30 Aligned_cols=45 Identities=24% Similarity=0.338 Sum_probs=42.1
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 20 PKRIRTAFSPSQLLKLEHAF---EKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 20 ~rr~Rt~~t~~q~~~Le~~F---~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
.++.|+.|+..|+..|+..| ..++||+..++..||..+||++.||
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV 48 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQV 48 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHH
Confidence 36789999999999999999 8999999999999999999999875
No 51
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.32 E-value=1e-12 Score=68.36 Aligned_cols=40 Identities=25% Similarity=0.360 Sum_probs=32.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy13127 17 FRKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQS 56 (64)
Q Consensus 17 ~~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~ 56 (64)
.++.++.|+.|+..|+..||..|+.++||+...|.+||..
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~ 45 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEE 45 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 4677889999999999999999999999999999999999
No 52
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.32 E-value=1.2e-12 Score=61.66 Aligned_cols=40 Identities=45% Similarity=0.700 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 25 TAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 25 t~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
|.||..|+..||..|..++||+..++.+||..+||++.||
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV 41 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQV 41 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHh
Confidence 6799999999999999999999999999999999999875
No 53
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.32 E-value=1.8e-12 Score=71.27 Aligned_cols=47 Identities=21% Similarity=0.259 Sum_probs=41.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 18 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
+++++.||.||..|+..||..|..++||+..++..||..+||++.||
T Consensus 85 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV 131 (146)
T 1au7_A 85 ERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVV 131 (146)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhc
Confidence 56778899999999999999999999999999999999999999875
No 54
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.32 E-value=1.3e-12 Score=72.77 Aligned_cols=47 Identities=17% Similarity=0.312 Sum_probs=40.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 18 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
.++++.||.||..|+..||..|..++||+..++..||..+||++.||
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV 145 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVI 145 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHh
Confidence 56788999999999999999999999999999999999999999875
No 55
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.31 E-value=2.9e-12 Score=70.69 Aligned_cols=47 Identities=30% Similarity=0.470 Sum_probs=44.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 18 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
.++++.|+.|+..|+..||..|..++||+..++..||..+||++.||
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV 137 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVV 137 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHH
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHh
Confidence 56778899999999999999999999999999999999999999875
No 56
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=3.3e-12 Score=66.66 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=38.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHc
Q psy13127 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSL 57 (64)
Q Consensus 18 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l 57 (64)
++.++.|+.|+..|+..||..|+.++||+..+|++||..+
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~l 43 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEEC 43 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 5688899999999999999999999999999999999999
No 57
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.31 E-value=4.9e-12 Score=63.79 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=43.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 18 RKPKRIRTAFSPSQLLKLEHAFEK---NHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 18 ~~~rr~Rt~~t~~q~~~Le~~F~~---~~~~~~~~r~~La~~l~l~~~qV 64 (64)
.+.++.|+.|+..|+..|+..|.. ++||+..++..||..+||++.||
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV 54 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQI 54 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHh
Confidence 457778999999999999999987 69999999999999999999876
No 58
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.29 E-value=3.9e-12 Score=64.53 Aligned_cols=47 Identities=23% Similarity=0.252 Sum_probs=43.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 18 RKPKRIRTAFSPSQLLKLEHAFEK---NHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 18 ~~~rr~Rt~~t~~q~~~Le~~F~~---~~~~~~~~r~~La~~l~l~~~qV 64 (64)
.++++.|+.|+..|+..|+..|.. ++||+..++..||..+||++.||
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV 74 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQI 74 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHH
Confidence 445667999999999999999999 99999999999999999999875
No 59
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.29 E-value=2.1e-12 Score=72.25 Aligned_cols=48 Identities=25% Similarity=0.176 Sum_probs=36.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 17 FRKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 17 ~~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
.+++++.||.||..|+..||..|..++||+..++.+||..+||++.||
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV 143 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVV 143 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHH
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhh
Confidence 366788999999999999999999999999999999999999999875
No 60
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.28 E-value=3.4e-12 Score=64.65 Aligned_cols=44 Identities=25% Similarity=0.343 Sum_probs=41.1
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 21 KRIRTAFSPSQLLKLEHAF---EKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 21 rr~Rt~~t~~q~~~Le~~F---~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
++.|+.|+..|+..|+..| ..++||+..++..||..+||++.||
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV 48 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQV 48 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHH
Confidence 6789999999999999999 8999999999999999999999875
No 61
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.27 E-value=4.8e-12 Score=60.17 Aligned_cols=42 Identities=26% Similarity=0.306 Sum_probs=39.5
Q ss_pred CCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 23 IRTAFSPSQLLKLEHAFEK---NHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 23 ~Rt~~t~~q~~~Le~~F~~---~~~~~~~~r~~La~~l~l~~~qV 64 (64)
+|+.|+..|+..||..|.. ++||+..++..||..+||++.||
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV 45 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQI 45 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHH
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHH
Confidence 3689999999999999999 99999999999999999999875
No 62
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.26 E-value=4.3e-12 Score=70.73 Aligned_cols=47 Identities=23% Similarity=0.295 Sum_probs=40.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 18 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
.++++.|+.||..|+..|+..|+.++||+..++..||..+||++.||
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV 141 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTV 141 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHh
Confidence 56788999999999999999999999999999999999999999875
No 63
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.23 E-value=5.9e-12 Score=69.80 Aligned_cols=47 Identities=23% Similarity=0.209 Sum_probs=44.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 18 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
+++++.|+.|+..|+..||..|..++||+..++.+||..+||++.||
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV 140 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVV 140 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHH
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhhe
Confidence 46777899999999999999999999999999999999999998875
No 64
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=2.9e-11 Score=61.63 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 26 AFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 26 ~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
.||..|+..||..|..++||+..++.+||..+||++.||
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV 57 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREI 57 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHH
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhc
Confidence 489999999999999999999999999999999999875
No 65
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.21 E-value=3.9e-11 Score=61.31 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 26 AFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 26 ~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
.||..|+.+||..|..++||+..+|.+||..|||++.||
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qV 55 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREI 55 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHC
Confidence 789999999999999999999999999999999999876
No 66
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.21 E-value=1.3e-11 Score=62.17 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=39.3
Q ss_pred CCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 22 RIRTAFSPSQLLKLEHAFEK---NHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 22 r~Rt~~t~~q~~~Le~~F~~---~~~~~~~~r~~La~~l~l~~~qV 64 (64)
+.|+.|+..|+..|+..|.. ++||+..++..||..+||++.||
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV 49 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQI 49 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHc
Confidence 45667999999999999999 99999999999999999999875
No 67
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.15 E-value=1.3e-11 Score=60.79 Aligned_cols=45 Identities=16% Similarity=0.100 Sum_probs=40.3
Q ss_pred CCCCCCCCCHHHHHHHHHHH-hhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 20 PKRIRTAFSPSQLLKLEHAF-EKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 20 ~rr~Rt~~t~~q~~~Le~~F-~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
..+.+..++..|+..||..| ..++||+..++.+||..|||++.||
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qV 53 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKI 53 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhc
Confidence 44566678888999999999 9999999999999999999999875
No 68
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.15 E-value=2.6e-11 Score=58.82 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 28 SPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 28 t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
|..|+.+||..|..++||+..++.+||..+||++.||
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qV 48 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEI 48 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHh
Confidence 6899999999999999999999999999999999875
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=1e-10 Score=56.42 Aligned_cols=41 Identities=17% Similarity=0.084 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 24 RTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 24 Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
+..++..|+..||..|..++||+..++.+||..+||++.||
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qV 47 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVV 47 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhc
Confidence 34567999999999999999999999999999999999875
No 70
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.09 E-value=1.7e-11 Score=70.11 Aligned_cols=41 Identities=24% Similarity=0.364 Sum_probs=36.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcC
Q psy13127 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLS 58 (64)
Q Consensus 18 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~ 58 (64)
++.||.|+.|+..|+..|+..|+.++||+...|.+||..++
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~ 153 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECN 153 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHH
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhC
Confidence 67788999999999999999999999999999999999999
No 71
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.06 E-value=1e-10 Score=67.96 Aligned_cols=42 Identities=21% Similarity=0.325 Sum_probs=37.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcC
Q psy13127 17 FRKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLS 58 (64)
Q Consensus 17 ~~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~ 58 (64)
.++.||.|+.|+..|+..|+..|+.++||+..+|++||..+|
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n 180 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECN 180 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHC
Confidence 377888999999999999999999999999999999999887
No 72
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.06 E-value=1.7e-10 Score=56.40 Aligned_cols=41 Identities=39% Similarity=0.632 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 24 RTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 24 Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
-..+|..|+..||..|..++||+..++.+||..+||++.||
T Consensus 8 ~~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qV 48 (69)
T 2l9r_A 8 HSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQV 48 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHH
T ss_pred CCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhhe
Confidence 34689999999999999999999999999999999999875
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=98.89 E-value=1.5e-09 Score=52.69 Aligned_cols=39 Identities=26% Similarity=0.207 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHh---hcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 26 AFSPSQLLKLEHAFE---KNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 26 ~~t~~q~~~Le~~F~---~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
.|+..|...|+..|. .++||+..++..||..+||++.||
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV 45 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQV 45 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHh
Confidence 689999999999999 999999999999999999999875
No 74
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.87 E-value=1.1e-09 Score=52.89 Aligned_cols=35 Identities=14% Similarity=0.078 Sum_probs=32.3
Q ss_pred HHHHHHHHHH-hhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 30 SQLLKLEHAF-EKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 30 ~q~~~Le~~F-~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
.|+.+||..| ..++||+...+.+||..|||+++||
T Consensus 10 ~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQV 45 (64)
T 1x2m_A 10 QPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSI 45 (64)
T ss_dssp CHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHH
T ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHH
Confidence 4799999999 5799999999999999999999886
No 75
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.55 E-value=3.9e-08 Score=59.99 Aligned_cols=43 Identities=23% Similarity=0.342 Sum_probs=40.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 22 RIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 22 r~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
+.++.++..|+..|+..|+.++||+..+|.+||..+||+++||
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv 409 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQV 409 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHH
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHh
Confidence 3477899999999999999999999999999999999999886
No 76
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=1.5e-07 Score=45.93 Aligned_cols=36 Identities=11% Similarity=0.106 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 29 PSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 29 ~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
.+|+..|+..|..|++|+..++..||..+||+..+|
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VV 49 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFV 49 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHH
Confidence 468999999999999999999999999999998654
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=98.41 E-value=2.2e-07 Score=47.30 Aligned_cols=40 Identities=20% Similarity=0.216 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 25 TAFSPSQLLKLEHAFEK---NHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 25 t~~t~~q~~~Le~~F~~---~~~~~~~~r~~La~~l~l~~~qV 64 (64)
..|+..+...|+..|.. ++||+..++..||..+||++.||
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV 52 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQV 52 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHH
Confidence 46889999999999987 99999999999999999999876
No 78
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=89.48 E-value=0.0013 Score=36.31 Aligned_cols=30 Identities=10% Similarity=-0.013 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCH
Q psy13127 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVG 47 (64)
Q Consensus 18 ~~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~ 47 (64)
...++.||.|+..|+..|+..|+.++||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 456788999999999999999999999864
No 79
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=77.96 E-value=2.8 Score=20.18 Aligned_cols=38 Identities=13% Similarity=0.273 Sum_probs=24.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCc
Q psy13127 20 PKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTET 62 (64)
Q Consensus 20 ~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~ 62 (64)
.++.+..|+..+.......+... . ...++|..+|++..
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~s 53 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPES 53 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHH
Confidence 34456688998866555555433 1 24578999998754
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=71.94 E-value=5.2 Score=17.68 Aligned_cols=38 Identities=13% Similarity=0.337 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCc
Q psy13127 24 RTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTET 62 (64)
Q Consensus 24 Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~ 62 (64)
|..|+.+........+.... .......++|..+|++..
T Consensus 3 r~~ys~efK~~~~~~~~~g~-s~~~~~~~vA~~~gIs~~ 40 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRNDN-DCKGNQRATARKYNIHRR 40 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHCT-TTTTCHHHHHHHTTSCHH
T ss_pred CCcCCHHHHHHHHHHHHcCC-CcchHHHHHHHHHCcCHH
Confidence 45688888776655554432 111114588999998754
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=70.58 E-value=7.1 Score=19.77 Aligned_cols=37 Identities=11% Similarity=0.222 Sum_probs=26.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCc
Q psy13127 23 IRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTET 62 (64)
Q Consensus 23 ~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~ 62 (64)
+|..||.++...+-..+..+.... ..++|..+|++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~s 40 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPS 40 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHH
Confidence 577899999988777775554443 2367888888754
No 82
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.55 E-value=2.9 Score=20.07 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=27.6
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 33 LKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 33 ~~Le~~F~~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
..|+..|...+.+.-.....|+.+.+|+..||
T Consensus 19 e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqv 50 (70)
T 2ys9_A 19 QPLERYWAAHQQLRETDIPQLSQASRLSTQQV 50 (70)
T ss_dssp HHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHH
T ss_pred hHHHHHHHHhcccchhhHHHHHHHhCCCHHHH
Confidence 56999999999999999999999999887654
No 83
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=61.04 E-value=16 Score=19.14 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=27.3
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCHHHHHHHHH----Hc--CCCCcC
Q psy13127 21 KRIRTAFSPSQLLKLEHAF-EKNHYVVGAERKQLAQ----SL--SLTETQ 63 (64)
Q Consensus 21 rr~Rt~~t~~q~~~Le~~F-~~~~~~~~~~r~~La~----~l--~l~~~q 63 (64)
++.|..+|..|...+-..+ +.++-.+. .+||. .. +++...
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q---~~la~wa~~~f~~~is~st 52 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQ---QDLIEWFREKFGKDISQPS 52 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCH---HHHHHHHHHHHSSCCSSSS
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHCCCCcHHH
Confidence 5678899999999998888 55554433 35566 66 555443
No 84
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=59.56 E-value=8.4 Score=15.42 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=19.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCc
Q psy13127 26 AFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTET 62 (64)
Q Consensus 26 ~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~ 62 (64)
.++..+...+...+.... ...++|..+|++..
T Consensus 5 ~l~~~~~~~i~~~~~~g~-----s~~~IA~~lgis~~ 36 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLNV-----SLHEMSRKISRSRH 36 (51)
T ss_dssp CCCHHHHHHHHHHHHTTC-----CHHHHHHHHTCCHH
T ss_pred CCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHH
Confidence 456766655554454332 34578999998764
No 85
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=55.26 E-value=11 Score=18.28 Aligned_cols=39 Identities=15% Similarity=0.318 Sum_probs=23.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcC
Q psy13127 19 KPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63 (64)
Q Consensus 19 ~~rr~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~q 63 (64)
........+|..+...|....+-. ...++|..||++...
T Consensus 22 ~~~~~~~~Lt~rE~~Vl~l~~~G~------s~~eIA~~L~iS~~T 60 (90)
T 3ulq_B 22 SSQKEQDVLTPRECLILQEVEKGF------TNQEIADALHLSKRS 60 (90)
T ss_dssp -------CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHH
T ss_pred cccccccCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHH
Confidence 333456679999999998766322 355788899888653
No 86
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=48.66 E-value=27 Score=18.06 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=29.9
Q ss_pred CCCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCCC
Q psy13127 23 IRTAFSPSQLLKLEHAFEK-----NHYVVGAERKQLAQSLSLTE 61 (64)
Q Consensus 23 ~Rt~~t~~q~~~Le~~F~~-----~~~~~~~~r~~La~~l~l~~ 61 (64)
++..+|..|+..|...|.. +-+++..+-..+...||...
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 49 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVP 49 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCc
Confidence 4567999999999999974 34678887777777777654
No 87
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=46.61 E-value=22 Score=17.55 Aligned_cols=34 Identities=18% Similarity=0.089 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcC
Q psy13127 24 RTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63 (64)
Q Consensus 24 Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~q 63 (64)
...+++.+...|...++.. .-.++|..||+++..
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~T 65 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKT 65 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHH
Confidence 5668999999987765433 236889999988643
No 88
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=46.56 E-value=12 Score=16.52 Aligned_cols=32 Identities=9% Similarity=-0.146 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcC
Q psy13127 27 FSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63 (64)
Q Consensus 27 ~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~q 63 (64)
+++.+...+...|-.+. .-.++|..+|++...
T Consensus 16 L~~~~r~il~l~~~~g~-----s~~eIA~~lgis~~t 47 (70)
T 2o8x_A 16 LTTDQREALLLTQLLGL-----SYADAAAVCGCPVGT 47 (70)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHH
Confidence 56777777776543332 345788899988643
No 89
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=45.86 E-value=12 Score=17.06 Aligned_cols=35 Identities=9% Similarity=0.042 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHcCCCCcC
Q psy13127 26 AFSPSQLLKLEHAFEKN--HYVVGAERKQLAQSLSLTETQ 63 (64)
Q Consensus 26 ~~t~~q~~~Le~~F~~~--~~~~~~~r~~La~~l~l~~~q 63 (64)
.+++.+...+...|-.. .-. .-.++|..+|++...
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~---s~~eIA~~l~is~~t 46 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREH---TLEEVGAYFGVTRER 46 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC---CHHHHHHHHTCCHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCC---CHHHHHHHHCCCHHH
Confidence 35777888887776410 111 345789999988753
No 90
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=44.69 E-value=12 Score=17.79 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCc
Q psy13127 27 FSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTET 62 (64)
Q Consensus 27 ~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~ 62 (64)
++..+...|...|-... .-.++|..+|++..
T Consensus 38 L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~ 68 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGW-----STAQIATDLGIAEG 68 (92)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHH
Confidence 45555555554333222 34578888888764
No 91
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=40.30 E-value=15 Score=19.61 Aligned_cols=30 Identities=0% Similarity=-0.118 Sum_probs=19.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHcCCCCc
Q psy13127 32 LLKLEHAFEKNHYVVGAERKQLAQSLSLTET 62 (64)
Q Consensus 32 ~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~ 62 (64)
+......|...-|-... -.++|...|++..
T Consensus 34 l~aa~~lf~~~G~~~~t-v~~IA~~agvs~~ 63 (215)
T 2qko_A 34 VNAAIEVLAREGARGLT-FRAVDVEANVPKG 63 (215)
T ss_dssp HHHHHHHHHHTCTTTCC-HHHHHHHSSSTTT
T ss_pred HHHHHHHHHHhChhhcc-HHHHHHHcCCCcc
Confidence 33556668777765333 4478999998864
No 92
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=40.01 E-value=13 Score=16.67 Aligned_cols=36 Identities=8% Similarity=0.164 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcC
Q psy13127 27 FSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63 (64)
Q Consensus 27 ~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~q 63 (64)
.++.+...+...|-.+-+ ....-.++|..+|++...
T Consensus 6 L~~~er~il~l~~~l~~~-~g~s~~eIA~~lgis~~t 41 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRER 41 (68)
T ss_dssp CCHHHHHHHHHHTTTTSS-SCCCHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCcCHHH
Confidence 567777777766621100 011345789999988753
No 93
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=39.98 E-value=20 Score=19.92 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=20.0
Q ss_pred hcCCCCHHHHHHHHHHcCCCCcCC
Q psy13127 41 KNHYVVGAERKQLAQSLSLTETQF 64 (64)
Q Consensus 41 ~~~~~~~~~r~~La~~l~l~~~qV 64 (64)
..-|++......+|..|+++..+|
T Consensus 37 ~~G~l~~~~~~~iA~~l~l~~~~V 60 (181)
T 3i9v_2 37 EEGWIRPERIEEIARLVGTTPTEV 60 (181)
T ss_dssp HHSSCCHHHHHHHHHHHTSCHHHH
T ss_pred HhCCCCHHHHHHHHHHhCcCHHHH
Confidence 346899999999999999997653
No 94
>3h0d_A CTSR; protein DNA complex, winged HTH domain, 4-helix bundle, DNA tandem repeat, transcription/DNA complex; HET: DNA; 2.40A {Bacillus stearothermophilus}
Probab=39.62 E-value=8.1 Score=21.27 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=13.8
Q ss_pred HHHHHHHHcCCCCcCC
Q psy13127 49 ERKQLAQSLSLTETQF 64 (64)
Q Consensus 49 ~r~~La~~l~l~~~qV 64 (64)
.|.+||..++|-++||
T Consensus 26 ~R~eLA~~F~CvPSQI 41 (155)
T 3h0d_A 26 KRSEIANKFRCVPSQI 41 (155)
T ss_dssp CHHHHHHHTTSCTHHH
T ss_pred eHHHHHHhcCCChhhc
Confidence 4789999999999875
No 95
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=38.69 E-value=16 Score=14.74 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCc
Q psy13127 27 FSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTET 62 (64)
Q Consensus 27 ~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~ 62 (64)
++..+...+...+... . ...++|..+|++..
T Consensus 6 ~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~ 36 (52)
T 1jko_C 6 INKHEQEQISRLLEKG--H---PRQQLAIIFGIGVS 36 (52)
T ss_dssp SCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHH
T ss_pred CCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHH
Confidence 3444444444444433 2 34578999998753
No 96
>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}
Probab=36.52 E-value=52 Score=17.72 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=20.6
Q ss_pred CCCCCHHHHHHHHHHHhhcC--CCCHHH
Q psy13127 24 RTAFSPSQLLKLEHAFEKNH--YVVGAE 49 (64)
Q Consensus 24 Rt~~t~~q~~~Le~~F~~~~--~~~~~~ 49 (64)
...+|..|+......|.... |-...+
T Consensus 30 ~~~~Tr~qL~~~R~EFWDT~p~~~Gr~E 57 (137)
T 2ksn_A 30 DYPMTDGQLRSKRDEFWDTAPAFEGRKE 57 (137)
T ss_dssp SSCCSHHHHHHHHHHHHTTSSTTCCCHH
T ss_pred CCCCCHHHHHHHHHHHHhcCCccCCCHH
Confidence 34699999999999999888 755443
No 97
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=36.13 E-value=24 Score=13.68 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=8.3
Q ss_pred CCCCCHHHHHHHHH
Q psy13127 24 RTAFSPSQLLKLEH 37 (64)
Q Consensus 24 Rt~~t~~q~~~Le~ 37 (64)
-++|...|+.+|..
T Consensus 6 vtrfdekqieelld 19 (31)
T 4h62_V 6 VTRFDEKQIEELLD 19 (31)
T ss_dssp ----CHHHHHHHHH
T ss_pred cccccHHHHHHHHH
Confidence 46788999988864
No 98
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=36.10 E-value=51 Score=17.57 Aligned_cols=34 Identities=21% Similarity=0.110 Sum_probs=28.0
Q ss_pred CCCCCHHHHHHHHHHHhh--cCCCCHHHHHHHHHHc
Q psy13127 24 RTAFSPSQLLKLEHAFEK--NHYVVGAERKQLAQSL 57 (64)
Q Consensus 24 Rt~~t~~q~~~Le~~F~~--~~~~~~~~r~~La~~l 57 (64)
-...+..++..|+..++. +..++...+.++|-.|
T Consensus 15 ~~~~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~L 50 (134)
T 3o48_A 15 YEPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGL 50 (134)
T ss_dssp GCCCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 356789999999999976 6788999988888655
No 99
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=34.94 E-value=27 Score=15.41 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCc
Q psy13127 24 RTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTET 62 (64)
Q Consensus 24 Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~ 62 (64)
-..+++.+...|...++ . + .-.++|..+|++..
T Consensus 9 ~~~L~~~e~~il~~~~~-g-~----s~~eIA~~l~is~~ 41 (74)
T 1fse_A 9 KPLLTKREREVFELLVQ-D-K----TTKEIASELFISEK 41 (74)
T ss_dssp CCCCCHHHHHHHHHHTT-T-C----CHHHHHHHHTSCHH
T ss_pred CCCCCHHHHHHHHHHHc-C-C----CHHHHHHHHCCCHH
Confidence 34578888888877432 2 1 34578999988764
No 100
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=34.78 E-value=26 Score=16.35 Aligned_cols=35 Identities=20% Similarity=0.192 Sum_probs=23.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcC
Q psy13127 23 IRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63 (64)
Q Consensus 23 ~Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~q 63 (64)
.-..++..+...|...++.. .-.++|..+|++...
T Consensus 18 ~~~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~t 52 (82)
T 1je8_A 18 DVNQLTPRERDILKLIAQGL------PNKMIARRLDITEST 52 (82)
T ss_dssp CGGGSCHHHHHHHHHHTTTC------CHHHHHHHHTSCHHH
T ss_pred HHccCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHH
Confidence 34468898988887743221 355789999988643
No 101
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=34.63 E-value=31 Score=18.41 Aligned_cols=18 Identities=28% Similarity=0.274 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHHHcCCCC
Q psy13127 44 YVVGAERKQLAQSLSLTE 61 (64)
Q Consensus 44 ~~~~~~r~~La~~l~l~~ 61 (64)
-.+...|.+||..||++.
T Consensus 80 DsSl~~RkeLA~eL~~~~ 97 (130)
T 2gqb_A 80 DSSLSARKELAKELGYSG 97 (130)
T ss_dssp CCSHHHHHHHHHHHTCCC
T ss_pred CccHHHHHHHHHHhCCCC
Confidence 356789999999999874
No 102
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=34.52 E-value=34 Score=16.45 Aligned_cols=33 Identities=21% Similarity=0.186 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcC
Q psy13127 25 TAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63 (64)
Q Consensus 25 t~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~q 63 (64)
..++..+...|...++.. .-.++|..+|++...
T Consensus 26 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~t 58 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGL------TNKQIADRMFLAEKT 58 (95)
T ss_dssp -CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHH
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHH
Confidence 357888888888754433 245789999888643
No 103
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=33.85 E-value=46 Score=17.59 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCCC
Q psy13127 24 RTAFSPSQLLKLEHAFEK-----NHYVVGAERKQLAQSLSLTE 61 (64)
Q Consensus 24 Rt~~t~~q~~~Le~~F~~-----~~~~~~~~r~~La~~l~l~~ 61 (64)
.+.+|..|+..|...|.. +-+++..+-..+...+|+..
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 44 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSP 44 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCCh
Confidence 456888899999999874 33677777766666776543
No 104
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=32.71 E-value=26 Score=16.50 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHcCCCCcC
Q psy13127 27 FSPSQLLKLEHAFEKN--HYVVGAERKQLAQSLSLTETQ 63 (64)
Q Consensus 27 ~t~~q~~~Le~~F~~~--~~~~~~~r~~La~~l~l~~~q 63 (64)
.++.+...+...|-.. .-. .-.++|..+|++...
T Consensus 19 L~~~er~vl~l~~~l~~~~~~---s~~EIA~~lgis~~t 54 (87)
T 1tty_A 19 LSPREAMVLRMRYGLLDGKPK---TLEEVGQYFNVTRER 54 (87)
T ss_dssp SCHHHHHHHHHHHTTTTSSCC---CHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHccCCCCCC---CHHHHHHHHCCCHHH
Confidence 5677777777666411 111 345788889888643
No 105
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=32.21 E-value=45 Score=15.79 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHcCCCCc
Q psy13127 24 RTAFSPSQLLKLEHAFEKN-HYVVGAERKQLAQSLSLTET 62 (64)
Q Consensus 24 Rt~~t~~q~~~Le~~F~~~-~~~~~~~r~~La~~l~l~~~ 62 (64)
|..||..+....-..+... -+ ....+|..+|++..
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~ 38 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRV 38 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHH
Confidence 3468888776555444322 11 34578888888754
No 106
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=32.17 E-value=39 Score=17.66 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHcCCCCcC
Q psy13127 27 FSPSQLLKLEHAFEK----NHYVVGAERKQLAQSLSLTETQ 63 (64)
Q Consensus 27 ~t~~q~~~Le~~F~~----~~~~~~~~r~~La~~l~l~~~q 63 (64)
.|..++..|...+.. +.+|+.. .||..+|++...
T Consensus 30 Ls~~E~~lLl~L~~~~~~g~~~ps~~---~LA~~~~~s~~~ 67 (135)
T 2v79_A 30 LNETELILLLKIKMHLEKGSYFPTPN---QLQEGMSISVEE 67 (135)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCSCCHH---HHHTTSSSCHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCHH---HHHHHHCcCHHH
Confidence 455666655555442 4566554 789999988754
No 107
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=30.04 E-value=25 Score=17.81 Aligned_cols=15 Identities=20% Similarity=0.186 Sum_probs=10.8
Q ss_pred HHHHHHHHcCCCCcC
Q psy13127 49 ERKQLAQSLSLTETQ 63 (64)
Q Consensus 49 ~r~~La~~l~l~~~q 63 (64)
.-.++|..+|++...
T Consensus 126 s~~EIA~~lgis~~t 140 (164)
T 3mzy_A 126 SYREIATILSKNLKS 140 (164)
T ss_dssp CHHHHHHHHTCCHHH
T ss_pred CHHHHHHHHCCCHHH
Confidence 456788888887643
No 108
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=29.45 E-value=33 Score=17.29 Aligned_cols=32 Identities=9% Similarity=0.228 Sum_probs=20.8
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCc
Q psy13127 26 AFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTET 62 (64)
Q Consensus 26 ~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~ 62 (64)
.+++.+...+...|..+. .-.++|..+|++..
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~ 53 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQ 53 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHH
Confidence 356777777766544332 34578888888764
No 109
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=27.61 E-value=30 Score=15.55 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCc
Q psy13127 27 FSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTET 62 (64)
Q Consensus 27 ~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~ 62 (64)
+++.+...+...+... .-.++|..+|++..
T Consensus 17 L~~~e~~vl~l~~~g~------s~~eIA~~l~is~~ 46 (79)
T 1x3u_A 17 LSERERQVLSAVVAGL------PNKSIAYDLDISPR 46 (79)
T ss_dssp HCHHHHHHHHHHTTTC------CHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHHHHcCC------CHHHHHHHHCcCHH
Confidence 4555666665432211 23477888887764
No 110
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=27.34 E-value=56 Score=16.21 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCc
Q psy13127 25 TAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTET 62 (64)
Q Consensus 25 t~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~ 62 (64)
..++..+...+...+..+. ...++|..+|++..
T Consensus 5 ~~~s~~~r~~i~~~~~~G~-----s~~~ia~~lgis~~ 37 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLNV-----SLHEMSRKISRSRH 37 (141)
T ss_dssp CCCCHHHHHHHHHHHHTTC-----CHHHHHHHHTCCHH
T ss_pred ccCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHH
Confidence 4577777776666665432 34578888888754
No 111
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=26.77 E-value=66 Score=16.37 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHcCCCCcC
Q psy13127 26 AFSPSQLLKLEHAFEK----NHYVVGAERKQLAQSLSLTETQ 63 (64)
Q Consensus 26 ~~t~~q~~~Le~~F~~----~~~~~~~~r~~La~~l~l~~~q 63 (64)
-.+..+...|-..+.. +.+|+. ..||..+|++...
T Consensus 29 gLt~~e~~vll~L~~~~~~~~~~ps~---~~LA~~l~~s~~~ 67 (128)
T 2vn2_A 29 GLGEGELVLLLHMQSFFEEGVLFPTP---AELAERMTVSAAE 67 (128)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSSCCH---HHHHHTSSSCHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCH---HHHHHHHCcCHHH
Confidence 4667777766555442 345544 4789999988754
No 112
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=26.73 E-value=38 Score=16.97 Aligned_cols=31 Identities=13% Similarity=0.206 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCc
Q psy13127 27 FSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTET 62 (64)
Q Consensus 27 ~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~ 62 (64)
+++.+...+...|..+. .-.++|..+|++..
T Consensus 26 L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~ 56 (113)
T 1xsv_A 26 LTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQ 56 (113)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHH
Confidence 45666666655443332 34578888888764
No 113
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=26.29 E-value=53 Score=14.69 Aligned_cols=30 Identities=10% Similarity=0.255 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCc
Q psy13127 26 AFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTET 62 (64)
Q Consensus 26 ~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~ 62 (64)
.++...+..+....- . ...+||..+|++..
T Consensus 10 ~~~g~~lr~~R~~~g----l---tq~elA~~~gvs~~ 39 (73)
T 3fmy_A 10 TVAPEFIVKVRKKLS----L---TQKEASEIFGGGVN 39 (73)
T ss_dssp CCCHHHHHHHHHHTT----C---CHHHHHHHHCSCTT
T ss_pred CCCHHHHHHHHHHcC----C---CHHHHHHHhCcCHH
Confidence 456666555543221 1 24467777776654
No 114
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=25.98 E-value=42 Score=15.72 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCC
Q psy13127 27 FSPSQLLKLEHAFEK-----NHYVVGAERKQLAQSLSLT 60 (64)
Q Consensus 27 ~t~~q~~~Le~~F~~-----~~~~~~~~r~~La~~l~l~ 60 (64)
++..+...+...|.. +-+.+..+-..+...+|++
T Consensus 3 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~ 41 (92)
T 1fi6_A 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLP 41 (92)
T ss_dssp CCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSC
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCC
Confidence 456677777777764 2245555555555555554
No 115
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=25.67 E-value=22 Score=16.53 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=25.9
Q ss_pred CCCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCCC
Q psy13127 23 IRTAFSPSQLLKLEHAFEK-----NHYVVGAERKQLAQSLSLTE 61 (64)
Q Consensus 23 ~Rt~~t~~q~~~Le~~F~~-----~~~~~~~~r~~La~~l~l~~ 61 (64)
.-..++..+...|...|.. +-+++..+-..+...+|++.
T Consensus 17 ~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ 60 (91)
T 2pmy_A 17 QGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRP 60 (91)
T ss_dssp --CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCH
T ss_pred HhccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCH
Confidence 3456788888889888864 34677777666666666543
No 116
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=25.06 E-value=35 Score=14.24 Aligned_cols=29 Identities=14% Similarity=0.123 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCc
Q psy13127 29 PSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTET 62 (64)
Q Consensus 29 ~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~ 62 (64)
..+...+...+..+. ...++|..+|++..
T Consensus 18 ~~~~~~i~~l~~~g~-----s~~eIA~~lgis~~ 46 (55)
T 2x48_A 18 DDLVSVAHELAKMGY-----TVQQIANALGVSER 46 (55)
T ss_dssp HHHHHHHHHHHHTTC-----CHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHcCC-----CHHHHHHHHCcCHH
Confidence 445444444443332 35578999998864
No 117
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=24.29 E-value=48 Score=15.50 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCc
Q psy13127 26 AFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTET 62 (64)
Q Consensus 26 ~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~ 62 (64)
.++..+...|......+.-. ...+||..+|++..
T Consensus 18 ~l~~~~~~~l~~l~~~~~~~---t~~ela~~l~is~~ 51 (109)
T 2d1h_A 18 KITDTDVAVLLKMVEIEKPI---TSEELADIFKLSKT 51 (109)
T ss_dssp TCCHHHHHHHHHHHHHCSCE---EHHHHHHHHTCCHH
T ss_pred cCCHHHHHHHHHHHHcCCCC---CHHHHHHHHCcCHH
Confidence 35677777776666533333 34578889888754
No 118
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=24.28 E-value=44 Score=18.13 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCcC
Q psy13127 27 FSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63 (64)
Q Consensus 27 ~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~q 63 (64)
+++.+...+...|-.+ ..-.++|..+|++...
T Consensus 188 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~ 219 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE-----LPAKEVAKILETSVSR 219 (239)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHH
T ss_pred CCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHH
Confidence 3444555554444222 1345788888887643
No 119
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=22.85 E-value=45 Score=15.71 Aligned_cols=33 Identities=9% Similarity=0.052 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCc
Q psy13127 24 RTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTET 62 (64)
Q Consensus 24 Rt~~t~~q~~~Le~~F~~~~~~~~~~r~~La~~l~l~~~ 62 (64)
-..++..+...|...++... -.++|..+|++..
T Consensus 27 l~~Lt~~e~~vl~l~~~g~s------~~eIA~~l~is~~ 59 (91)
T 2rnj_A 27 YEMLTEREMEILLLIAKGYS------NQEIASASHITIK 59 (91)
T ss_dssp GGGCCSHHHHHHHHHHTTCC------TTHHHHHHTCCHH
T ss_pred HhcCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHH
Confidence 34578888888877543322 3467888887764
No 120
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=22.66 E-value=49 Score=17.37 Aligned_cols=14 Identities=7% Similarity=0.078 Sum_probs=9.7
Q ss_pred HHHHHHHcCCCCcC
Q psy13127 50 RKQLAQSLSLTETQ 63 (64)
Q Consensus 50 r~~La~~l~l~~~q 63 (64)
-.++|..+|++...
T Consensus 159 ~~EIA~~lgis~~t 172 (194)
T 1or7_A 159 YEEIAAIMDCPVGT 172 (194)
T ss_dssp HHHHHHHTTSCHHH
T ss_pred HHHHHHHHCCCHHH
Confidence 45778888887643
No 121
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=22.55 E-value=17 Score=15.64 Aligned_cols=14 Identities=7% Similarity=0.266 Sum_probs=10.2
Q ss_pred HHHHHHHcCCCCcC
Q psy13127 50 RKQLAQSLSLTETQ 63 (64)
Q Consensus 50 r~~La~~l~l~~~q 63 (64)
-.++|..+|+++..
T Consensus 16 ~~eIA~~l~is~~t 29 (61)
T 2jpc_A 16 NHGISEKLHISIKT 29 (61)
T ss_dssp SHHHHHHTCSCHHH
T ss_pred HHHHHHHhCCCHHH
Confidence 34789999988643
No 122
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=22.09 E-value=1.6e+02 Score=18.83 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=29.6
Q ss_pred CCCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCC
Q psy13127 23 IRTAFSPSQLLKLEHAFEK-----NHYVVGAERKQLAQSLSLT 60 (64)
Q Consensus 23 ~Rt~~t~~q~~~Le~~F~~-----~~~~~~~~r~~La~~l~l~ 60 (64)
.+..++.+|+.+|...|.. +-+++..+-..+...+|+.
T Consensus 292 s~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~ 334 (440)
T 3u0k_A 292 TRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN 334 (440)
T ss_dssp BCBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCC
T ss_pred hHhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCC
Confidence 4778999999999999974 4467777777766777654
No 123
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=21.51 E-value=51 Score=16.55 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCC
Q psy13127 26 AFSPSQLLKLEHAFEK-----NHYVVGAERKQLAQSLSL 59 (64)
Q Consensus 26 ~~t~~q~~~Le~~F~~-----~~~~~~~~r~~La~~l~l 59 (64)
-+|..|+..|...|.. +-+++..+-..+...++.
T Consensus 3 ~lt~eqi~el~~~F~~~D~d~~G~I~~~El~~~l~~~~~ 41 (148)
T 2lmt_A 3 ELTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRTLGQ 41 (148)
T ss_dssp SCCSHHHHHHHHHHHHHHCSSCCEEEGGGHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHhcCC
Confidence 3788899999988864 223444444444444443
No 124
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=20.69 E-value=42 Score=16.79 Aligned_cols=16 Identities=13% Similarity=0.335 Sum_probs=12.6
Q ss_pred HHHHHHHHcCCCCcCC
Q psy13127 49 ERKQLAQSLSLTETQF 64 (64)
Q Consensus 49 ~r~~La~~l~l~~~qV 64 (64)
....+|..+|+++.+|
T Consensus 25 gq~~vA~~iGV~~StI 40 (97)
T 1xwr_A 25 GTEKTAEAVGVDKSQI 40 (97)
T ss_dssp CHHHHHHHHTCCTTTH
T ss_pred hHHHHHHHhCCCHHHH
Confidence 3457999999998764
No 125
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=20.26 E-value=86 Score=14.91 Aligned_cols=23 Identities=17% Similarity=-0.013 Sum_probs=17.0
Q ss_pred hhcCCCCHHHHHHHHHHcCCCCc
Q psy13127 40 EKNHYVVGAERKQLAQSLSLTET 62 (64)
Q Consensus 40 ~~~~~~~~~~r~~La~~l~l~~~ 62 (64)
+.+..++......||..|+++..
T Consensus 58 E~G~~~s~~~l~kIa~~L~v~~~ 80 (88)
T 3t76_A 58 GKNENVSLTVLLAICEYLNCDFG 80 (88)
T ss_dssp HTTCCCCHHHHHHHHHHHTCCGG
T ss_pred HcCCCcCHHHHHHHHHHHCcCHH
Confidence 33556788888888888888764
Done!