RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13127
(64 letters)
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 54.4 bits (131), Expect = 1e-12
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 21 KRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
+R RT+F+ Q+ LE FE+ HY R++LA + L E +
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEAR 44
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 77
Score = 53.7 bits (129), Expect = 2e-12
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
R ++ R ++ Q L+LE F N Y+ R ++A+ L+LTE Q
Sbjct: 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQ 56
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 50.6 bits (121), Expect = 3e-11
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 19 KPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
K R+RT + QL L + N ++QL + L+
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRV 46
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 53
Score = 48.3 bits (115), Expect = 2e-10
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 22 RIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
R RTAFS QL +L+ F +N Y+ R+QL+ L L E Q
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQ 42
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 48.8 bits (116), Expect = 2e-10
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
P +RT F+ QL +LE F N Y+ A R ++A +L L ETQ
Sbjct: 25 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQ 70
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 47.8 bits (114), Expect = 3e-10
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 24 RTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
R ++ Q L+LE F N Y+ R ++A +LSLTE Q
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQ 40
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 47.6 bits (113), Expect = 4e-10
Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 19 KPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
K +R RT FS SQL +LE AFE+ Y R++LAQ +LTE +
Sbjct: 1 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEAR 45
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 46.7 bits (111), Expect = 9e-10
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 21 KRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
K + FS Q ++LE FE Y+ ERK+LA+ L L+E Q
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQ 43
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 46.4 bits (110), Expect = 1e-09
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 24 RTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
R F+ Q L F++N + ++Q L L +
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELST 41
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
{Rat (Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 46.7 bits (110), Expect = 2e-09
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 24 RTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
R + P+ L A+E+ ER+ L + + E
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECI 40
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 45.7 bits (108), Expect = 2e-09
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 22 RIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64
+ RT S + LE F ++ E ++A+ L+L +
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVV 43
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 45.8 bits (108), Expect = 3e-09
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64
K ++ R F+ +Q +LE F + Y+ ER+ LA + LT TQ
Sbjct: 7 NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQV 53
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 44.9 bits (106), Expect = 6e-09
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 20 PKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
P+R RT F+ SQ+ +LE F + Y+ L+ L+L Q
Sbjct: 1 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQ 44
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 44.5 bits (105), Expect = 8e-09
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 21 KRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
++ R FS +Q+ +LE F++ Y+ ER+ LA + LT TQ
Sbjct: 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQ 45
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 43.7 bits (103), Expect = 1e-08
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 24 RTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
+++ SP LE F + + E++++A+ +T Q
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQ 40
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 43.8 bits (103), Expect = 1e-08
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 21 KRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64
+R RT F+ QL +LE F++N Y + R+++A +LTE +
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARV 45
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 43.9 bits (103), Expect = 2e-08
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 22 RIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
R + L +E F +N Y A+R+++A + + +
Sbjct: 2 GSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQK 43
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 42.9 bits (101), Expect = 2e-08
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 21 KRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
++ R +S QL +LE + N ++ +R++++ + SL+E Q
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQ 44
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 42.6 bits (100), Expect = 3e-08
Identities = 8/41 (19%), Positives = 19/41 (46%)
Query: 24 RTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64
RT+ + + LE +F +N + +A+ L++ +
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVI 42
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 42.6 bits (100), Expect = 4e-08
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 21 KRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
++ RT F+ +QLL LE F + Y+ AER + + SLSLTETQ
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQ 43
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 41.8 bits (98), Expect = 7e-08
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 22 RIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
R RTAF+ QL +LE F K +YV R +LA L+L E+
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPEST 42
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 41.1 bits (96), Expect = 2e-07
Identities = 11/46 (23%), Positives = 16/46 (34%)
Query: 18 RKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQ 63
+ KR RT+ LE F K + +A L L +
Sbjct: 6 QARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDV 51
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 41.1 bits (96), Expect = 2e-07
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 21 KRIRTAFSPSQLLKLEHAFEK-NHYVVGAERKQLAQSLSLTETQ 63
+ Q+ LE+ F K N + +A LTE Q
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQ 45
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 40.5 bits (94), Expect = 4e-07
Identities = 10/47 (21%), Positives = 13/47 (27%), Gaps = 1/47 (2%)
Query: 19 KPKRIRTAFSPSQLLKLEHAFEK-NHYVVGAERKQLAQSLSLTETQF 64
R RT S L L+ Y L+ L L +
Sbjct: 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTI 52
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 40.3 bits (94), Expect = 4e-07
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 21 KRIRTAFSPSQLLKLEHAFE---KNHYVVGAERKQLAQSLSLTETQ 63
+R R F+ L F N Y +++LA+ +T +Q
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQ 47
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 38.9 bits (91), Expect = 1e-06
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 21 KRIRTAFSPSQLLKLEHAFE---KNHYVVGAERKQLAQSLSLTETQ 63
K R + + Y E+KQ+A +LT Q
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQ 48
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 36.6 bits (84), Expect = 1e-05
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 16 PFRKPKRIRTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64
P P++ + QL L+ +F + + E +L LT +
Sbjct: 1 PDFTPQK-FKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREI 48
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 36.1 bits (83), Expect = 2e-05
Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 4/51 (7%)
Query: 18 RKPKRIRTAFSPSQLLKLEHAFEK----NHYVVGAERKQLAQSLSLTETQF 64
KR RT F+ Q K+ E+ +Q +
Sbjct: 15 GTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVL 65
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 34.8 bits (80), Expect = 4e-05
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 27 FSPSQLLKLEHAFEKN---HYVVGAERKQLAQSLSLTETQ 63
F+ + LE F KN Y+ + L ++ SL+ Q
Sbjct: 5 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQ 44
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 34.0 bits (78), Expect = 1e-04
Identities = 7/43 (16%), Positives = 12/43 (27%), Gaps = 1/43 (2%)
Query: 22 RIRTAFSPSQLLKLEHAFEK-NHYVVGAERKQLAQSLSLTETQ 63
+ LE F Y K L++ L + +
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRK 45
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 33.5 bits (77), Expect = 1e-04
Identities = 5/37 (13%), Positives = 10/37 (27%), Gaps = 1/37 (2%)
Query: 28 SPSQLLKLEHAFEK-NHYVVGAERKQLAQSLSLTETQ 63
+ LE F + + L++ L
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRS 37
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 31.2 bits (70), Expect = 0.002
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 24 RTAFSPSQLLKLEHAFEKNHYVVGAERKQLAQSLSLTETQF 64
+ QL L+ F + + + ++L Q L +
Sbjct: 7 GKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEI 47
>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 209
Score = 27.7 bits (61), Expect = 0.072
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 21 KRIRTAFSPSQLLKLEHAFEKNHYVVGAER 50
K + F + L + ++H + A R
Sbjct: 180 KEMEGDFKIVKHGSLMP-YHRDHIFIHAYR 208
>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 165
Score = 24.3 bits (51), Expect = 1.3
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 20 PKRIRTAFSPSQLLKLEHAFEK 41
P + + F ++ +L F+K
Sbjct: 3 PLEMCSHFDADEIKRLGKRFKK 24
>d2ea9a1 d.110.8.1 (A:8-110) Hypothetical protein YfjZ
{Escherichia coli [TaxId: 562]}
Length = 103
Score = 23.5 bits (51), Expect = 1.8
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 23 IRTAFSPSQLLKLEHAF 39
I FS ++ KL+ F
Sbjct: 36 ITGKFSDAECPKLDVVF 52
>d2inwa1 d.110.8.1 (A:4-120) Hypothetical protein YeeU {Shigella
flexneri [TaxId: 623]}
Length = 117
Score = 23.2 bits (50), Expect = 2.3
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 23 IRTAFSPSQLLKLEHAF 39
IR FS L+ AF
Sbjct: 47 IRGRFSDVDAYHLDQAF 63
>d2zd1b1 e.8.1.2 (B:5-428) HIV-1 reverse transcriptase {Human
immunodeficiency virus type 1 [TaxId: 11676]}
Length = 424
Score = 23.0 bits (49), Expect = 3.6
Identities = 6/26 (23%), Positives = 8/26 (30%)
Query: 1 MANGIRPDIPGFLLQPFRKPKRIRTA 26
N PG ++ K R A
Sbjct: 259 KLNWASQIYPGIKVRQLSKLLRGTKA 284
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 268
Score = 22.3 bits (47), Expect = 5.8
Identities = 5/32 (15%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 15 QPFRKPKRIRTAFSPSQLLKLEHAFEKNHYVV 46
+ F +P R+ + + + +K H +
Sbjct: 3 KLFSEPVRLVEKYPAGR----DGDLKKKHMLC 30
>d1p16a2 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subunit
{Yeast (Candida albicans) [TaxId: 5476]}
Length = 245
Score = 22.1 bits (46), Expect = 6.9
Identities = 14/55 (25%), Positives = 17/55 (30%), Gaps = 15/55 (27%)
Query: 7 PDIPGF-----LLQPFRKP-----KRIRTAFSPSQLL-----KLEHAFEKNHYVV 46
P IPG + R R T F SQ + LE + Y V
Sbjct: 10 PVIPGNKLDEEETKELRLMVAELLGRRNTGFPGSQPVSFERRHLEETLMQKDYFV 64
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.391
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 221,156
Number of extensions: 7936
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 40
Length of query: 64
Length of database: 2,407,596
Length adjustment: 33
Effective length of query: 31
Effective length of database: 1,954,506
Effective search space: 60589686
Effective search space used: 60589686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)