BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13131
(148 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 33 DCFTKIVRNESAVGLYKGMGAPITGVAPIFALSFLGYGAGKKVLTNENNDKLAHWQYFVA 92
+C TKI +++ GLY+G + G+ A F Y K +L + N + + +A
Sbjct: 158 NCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIV-SWMIA 216
Query: 93 GSFSGITTAAITAPGERIKCLLQIQSNETAK--VYSGPVDVVRKLVRQHGVTSVFK 146
+ + + ++ P + ++ + +QS +Y+G VD RK+ + G + FK
Sbjct: 217 QTVTAV-AGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFK 271
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 80 NNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSN----ETAKVYSGPVDVVRKL 135
++ L+ + F+AG + + AP ER+K LLQ+Q K Y G +D V ++
Sbjct: 1 SDQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRI 60
Query: 136 VRQHGVTSVFK 146
++ G S ++
Sbjct: 61 PKEQGFLSFWR 71
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
Query: 33 DCFTKIVRNESAVGLYKGMGAPITGVAPIFALSFLGYGAGKKVLTNENNDKLAHWQYFVA 92
DC +I + + + ++G A + P AL+F K++ + W+YF
Sbjct: 55 DCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAG 114
Query: 93 ----GSFSGITTAAITAPGE--RIKCLLQIQSNETAKVYSGPVDVVRKLVRQHGVTSVFK 146
G +G T+ P + R + + + ++G + + K+ + G+ +++
Sbjct: 115 NLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQ 174
>pdb|2XAA|A Chain A, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm
44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol
pdb|2XAA|B Chain B, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm
44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol
pdb|2XAA|C Chain C, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm
44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol
pdb|2XAA|D Chain D, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm
44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol
pdb|3JV7|A Chain A, Structure Of Adh-A From Rhodococcus Ruber
pdb|3JV7|B Chain B, Structure Of Adh-A From Rhodococcus Ruber
pdb|3JV7|C Chain C, Structure Of Adh-A From Rhodococcus Ruber
pdb|3JV7|D Chain D, Structure Of Adh-A From Rhodococcus Ruber
Length = 345
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Query: 53 APIT--GVAPIFALS----FLGYGAGKKVLTNENNDKLAHWQYFVAGSFSGITTAAITAP 106
AP+T G+ P A+S LG G+ V+ L H + + S A+
Sbjct: 149 APLTDAGLTPYHAISRVLPLLGPGSTAVVI---GVGGLGHVGIQILRAVSAARVIAVDLD 205
Query: 107 GERIKCLLQIQSNETAKVYSGPVDVVRKLVRQHGVTSVFK 146
+R+ ++ ++ K +G D +R+L G T+VF
Sbjct: 206 DDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFD 245
>pdb|3IAG|C Chain C, Csl (Rbp-Jk) Bound To Hes-1 Nonconsensus Site
Length = 422
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 53/142 (37%), Gaps = 20/142 (14%)
Query: 7 VAFECHVPPSKLNGLVIEYNIFWSTFDCFTKIVRNESAVGLYKGMGAPITGVAPIFALSF 66
+ F+ P + N +I W T I +++ Y+GMG + V P+ +
Sbjct: 280 IQFQATPCPKEQNKEMINDGASW------TIISTDKAEYTFYEGMGPVLAPVTPVPVVES 333
Query: 67 LGYGAGKKV----LTNEN-NDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQS--N 119
L G V LT +N L W F + + GE + C++ S
Sbjct: 334 LQLNGGGDVAMLELTGQNFTPNLRVW-------FGDVEAETMYRCGESMLCVVPDISAFR 386
Query: 120 ETAKVYSGPVDVVRKLVRQHGV 141
E + PV V LVR GV
Sbjct: 387 EGWRWVRQPVQVPVTLVRNDGV 408
>pdb|3BRG|C Chain C, Csl (Rbp-Jk) Bound To Dna
Length = 427
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 53/142 (37%), Gaps = 20/142 (14%)
Query: 7 VAFECHVPPSKLNGLVIEYNIFWSTFDCFTKIVRNESAVGLYKGMGAPITGVAPIFALSF 66
+ F+ P + N +I W T I +++ Y+GMG + V P+ +
Sbjct: 285 IQFQATPCPKEQNKEMINDGASW------TIISTDKAEYTFYEGMGPVLAPVTPVPVVES 338
Query: 67 LGYGAGKKV----LTNEN-NDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQS--N 119
L G V LT +N L W F + + GE + C++ S
Sbjct: 339 LQLNGGGDVAMLELTGQNFTPNLRVW-------FGDVEAETMYRCGESMLCVVPDISAFR 391
Query: 120 ETAKVYSGPVDVVRKLVRQHGV 141
E + PV V LVR GV
Sbjct: 392 EGWRWVRQPVQVPVTLVRNDGV 413
>pdb|3ZWU|A Chain A, Pseudomonas Fluorescens Phox In Complex With Vanadate, A
Transition State Analogue
pdb|3ZWU|B Chain B, Pseudomonas Fluorescens Phox In Complex With Vanadate, A
Transition State Analogue
pdb|4A9V|A Chain A, Pseudomonas Fluorescens Phox
pdb|4A9X|A Chain A, Pseudomonas Fluorescens Phox In Complex With The Substrate
Analogue Appcp
Length = 592
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 23/100 (23%)
Query: 52 GAPITGVAPIFALSFLGYGAGKKVLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIK 111
G P+ P F S G A ++V +NND ++ +++ PGE+ +
Sbjct: 39 GQPLHKNGPAFDPSGNGTAAAQEVQFGDNNDGMSLFEF----------------PGEKNR 82
Query: 112 CLLQIQSNETAKVYSGP-------VDVVRKLVRQHGVTSV 144
L+ I + T Y P + VRK + GV+ +
Sbjct: 83 ALMAINNEYTNYRYLYPHGGMPQSAEDVRKALACEGVSVI 122
>pdb|3IQD|B Chain B, Structure Of Octopine-Dehydrogenase In Complex With Nadh
And Agmatine
Length = 404
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 35/95 (36%), Gaps = 24/95 (25%)
Query: 33 DCFTKIVRNESAVGLYKGMGAPITGVAPIFALSFL--------------GYGAGKKVLTN 78
D + I N+S GL + A GVAP F +L AG +
Sbjct: 292 DLYHAITTNKSYKGLVHPVKAVDAGVAPDFGNRYLTEDIPMGMIVFKGVAIAAGVAI--- 348
Query: 79 ENNDKLAHW-------QYFVAGSFSGITTAAITAP 106
+NDKL W +Y V G+ +G A P
Sbjct: 349 PSNDKLIMWAQEKIGKEYLVDGALTGKDVATTRCP 383
>pdb|1YC1|A Chain A, Crystal Structures Of Human Hsp90alpha Complexed With
Dihydroxyphenylpyrazoles
pdb|1YC3|A Chain A, Crystal Structure Of Human Hsp90alpha Complexed With
Dihydroxyphenylpyrazoles
pdb|1YC4|A Chain A, Crystal Structure Of Human Hsp90alpha Complexed With
Dihydroxyphenylpyrazoles
Length = 264
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 178 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 233
Query: 135 LVRQH 139
+V++H
Sbjct: 234 IVKKH 238
>pdb|2XDU|A Chain A, Structre Of Hsp90 With Small Molecule Inhibitor Bound
Length = 236
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 162 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 217
Query: 135 LVRQH 139
+V++H
Sbjct: 218 IVKKH 222
>pdb|3FT5|A Chain A, Structure Of Hsp90 Bound With A Novel Fragment
pdb|3FT8|A Chain A, Structure Of Hsp90 Bound With A Noval Fragment.
pdb|3HYY|A Chain A, Crystal Structure Of Hsp90 With Fragment 37-D04
pdb|3HYZ|A Chain A, Crystal Structure Of Hsp90 With Fragment 42-C03
pdb|3HYZ|B Chain B, Crystal Structure Of Hsp90 With Fragment 42-C03
pdb|3HZ1|A Chain A, Crystal Structure Of Hsp90 With Fragments 37-D04 And
42-C03
pdb|3HZ5|A Chain A, Crystal Structure Of Hsp90 With Fragment Z064
pdb|2XAB|A Chain A, Structure Of Hsp90 With An Inhibitor Bound
pdb|2XAB|B Chain B, Structure Of Hsp90 With An Inhibitor Bound
pdb|2XJX|A Chain A, Structre Of Hsp90 With Small Molecule Inhibitor Bound
pdb|2XDK|A Chain A, Structure Of Hsp90 With Small Molecule Inhibitor Bound
pdb|2XDL|A Chain A, Structure Of Hsp90 With Small Molecule Inhibitor Bound
pdb|2XDS|A Chain A, Structre Of Hsp90 With Small Molecule Inhibitor Bound
pdb|2XDX|A Chain A, Structre Of Hsp90 With Small Molecule Inhibitor Bound
pdb|2XHR|A Chain A, Structure Of Hsp90 With Small Molecule Inhibitor Bound
pdb|2XHT|A Chain A, Structure Of Hsp90 With Small Molecule Inhibitor Bound
pdb|2XK2|A Chain A, Structre Of Hsp90 With Small Molecule Inhibitor Bound
Length = 249
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 163 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 218
Query: 135 LVRQH 139
+V++H
Sbjct: 219 IVKKH 223
>pdb|2XJG|A Chain A, Structure Of Hsp90 With Small Molecule Inhibitor Bound
pdb|2XHX|A Chain A, Structure Of Hsp90 With Small Molecule Inhibitor Bound
Length = 249
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 163 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 218
Query: 135 LVRQH 139
+V++H
Sbjct: 219 IVKKH 223
>pdb|3NBN|A Chain A, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|D Chain D, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
Length = 433
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 53/142 (37%), Gaps = 20/142 (14%)
Query: 7 VAFECHVPPSKLNGLVIEYNIFWSTFDCFTKIVRNESAVGLYKGMGAPITGVAPIFALSF 66
+ F+ P + N +I W T I +++ Y+GMG + V P+ +
Sbjct: 285 IQFQATPCPKEPNKEMINDGASW------TIISTDKAEYTFYEGMGPVLAPVTPVPVVES 338
Query: 67 LGYGAGKKV----LTNEN-NDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQS--N 119
L G V LT +N L W F + + GE + C++ S
Sbjct: 339 LQLNGGGDVAMLELTGQNFTPNLRVW-------FGDVEAETMYRCGESMLCVVPDISAFR 391
Query: 120 ETAKVYSGPVDVVRKLVRQHGV 141
E + PV V LVR G+
Sbjct: 392 EGWRWVRQPVQVPVTLVRNDGI 413
>pdb|2F8X|C Chain C, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3V79|C Chain C, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 434
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 53/142 (37%), Gaps = 20/142 (14%)
Query: 7 VAFECHVPPSKLNGLVIEYNIFWSTFDCFTKIVRNESAVGLYKGMGAPITGVAPIFALSF 66
+ F+ P + N +I W T I +++ Y+GMG + V P+ +
Sbjct: 285 IQFQATPCPKEPNKEMINDGASW------TIISTDKAEYTFYEGMGPVLAPVTPVPVVES 338
Query: 67 LGYGAGKKV----LTNEN-NDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQS--N 119
L G V LT +N L W F + + GE + C++ S
Sbjct: 339 LQLNGGGDVAMLELTGQNFTPNLRVW-------FGDVEAETMYRCGESMLCVVPDISAFR 391
Query: 120 ETAKVYSGPVDVVRKLVRQHGV 141
E + PV V LVR G+
Sbjct: 392 EGWRWVRQPVQVPVTLVRNDGI 413
>pdb|2YJW|A Chain A, Tricyclic Series Of Hsp90 Inhibitors
pdb|2YJX|A Chain A, Tricyclic Series Of Hsp90 Inhibitors
pdb|2YK2|A Chain A, Tricyclic Series Of Hsp90 Inhibitors
pdb|2YKB|A Chain A, Tricyclic Series Of Hsp90 Inhibitors
pdb|2YKC|A Chain A, Tricyclic Series Of Hsp90 Inhibitors
pdb|2YKE|A Chain A, Tricyclic Series Of Hsp90 Inhibitors
pdb|2YKI|A Chain A, Tricyclic Series Of Hsp90 Inhibitors
pdb|2YKJ|A Chain A, Tricyclic Series Of Hsp90 Inhibitors
pdb|2YK9|A Chain A, Tricyclic Series Of Hsp90 Inhibitors
Length = 209
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 136 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 191
Query: 135 LVRQH 139
+V++H
Sbjct: 192 IVKKH 196
>pdb|4AWO|A Chain A, Complex Of Hsp90 Atpase Domain With Tropane Derived
Inhibitors
pdb|4AWO|B Chain B, Complex Of Hsp90 Atpase Domain With Tropane Derived
Inhibitors
pdb|4AWP|A Chain A, Complex Of Hsp90 Atpase Domain With Tropane Derived
Inhibitors
pdb|4AWP|B Chain B, Complex Of Hsp90 Atpase Domain With Tropane Derived
Inhibitors
pdb|4AWQ|A Chain A, Complex Of Hsp90 Atpase Domain With Tropane Derived
Inhibitors
pdb|4AWQ|B Chain B, Complex Of Hsp90 Atpase Domain With Tropane Derived
Inhibitors
Length = 230
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 144 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 199
Query: 135 LVRQH 139
+V++H
Sbjct: 200 IVKKH 204
>pdb|2JJC|A Chain A, Hsp90 Alpha Atpase Domain With Bound Small Molecule
Fragment
Length = 218
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 145 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 200
Query: 135 LVRQH 139
+V++H
Sbjct: 201 IVKKH 205
>pdb|2QFO|A Chain A, Hsp90 Complexed With A143571 And A516383
pdb|2QFO|B Chain B, Hsp90 Complexed With A143571 And A516383
pdb|2QG0|A Chain A, Hsp90 Complexed With A943037
pdb|2QG0|B Chain B, Hsp90 Complexed With A943037
Length = 207
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 134 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 189
Query: 135 LVRQH 139
+V++H
Sbjct: 190 IVKKH 194
>pdb|3TUH|A Chain A, Crystal Structure Of The N-Terminal Domain Of An Hsp90 In
The Presence Of An The Inhibitor Ganetespib
pdb|3TUH|B Chain B, Crystal Structure Of The N-Terminal Domain Of An Hsp90 In
The Presence Of An The Inhibitor Ganetespib
Length = 209
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 135 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 190
Query: 135 LVRQH 139
+V++H
Sbjct: 191 IVKKH 195
>pdb|4EGH|A Chain A, Hsp90-Alpha Atpase Domain In Complex With
(4-Hydroxyphenyl)morpholin- 4-Yl Methanone
pdb|4EGI|A Chain A, Hsp90-Alpha Atpase Domain In Complex With
2-Amino-4-Ethylthio-6- Methyl-1,3,5-Triazine
pdb|4EGK|A Chain A, Human Hsp90-Alpha Atpase Domain Bound To Radicicol
Length = 232
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 146 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 201
Query: 135 LVRQH 139
+V++H
Sbjct: 202 IVKKH 206
>pdb|2QF6|A Chain A, Hsp90 Complexed With A56322
pdb|2QF6|B Chain B, Hsp90 Complexed With A56322
pdb|2QF6|C Chain C, Hsp90 Complexed With A56322
pdb|2QF6|D Chain D, Hsp90 Complexed With A56322
pdb|2QG2|A Chain A, Hsp90 Complexed With A917985
pdb|3OW6|A Chain A, Crystal Structure Of Hsp90 With N-Aryl-Benzimidazolone I
pdb|3OWB|A Chain A, Crystal Structure Of Hsp90 With Ver-49009
pdb|3OWD|A Chain A, Crystal Structure Of Hsp90 With N-Aryl-Benzimidazolone Ii
Length = 207
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 134 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 189
Query: 135 LVRQH 139
+V++H
Sbjct: 190 IVKKH 194
>pdb|2FWY|A Chain A, Structure Of Human Hsp90-Alpha Bound To The Potent Water
Soluble Inhibitor Pu-H64
pdb|2FWZ|A Chain A, Structure Of Human Hsp90-alpha Bound To The Potent Water
Soluble Inhibitor Pu-h71
pdb|2H55|A Chain A, Structure Of Human Hsp90-Alpha Bound To The Potent Water
Soluble Inhibitor Pu-Dz8
pdb|3O0I|A Chain A, Structure Of The Human Hsp90-Alpha N-Domain Bound To The
Hsp90 Inhibitor Pu-H54
Length = 256
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 170 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 225
Query: 135 LVRQH 139
+V++H
Sbjct: 226 IVKKH 230
>pdb|4EEH|A Chain A, Hsp90 Alpha N-Terminal Domain In Complex With An Inhibitor
3-(4- Hydroxy-Phenyl)-1h-Indazol-6-Ol
pdb|4EFT|A Chain A, Hsp90 Alpha N-Terminal Domain In Complex With An Inhibitor
3-
Cyclohexyl-2-(6-Hydroxy-1h-Indazol-3-Yl)-Propionitrile
pdb|4EFU|A Chain A, Hsp90 Alpha N-Terminal Domain In Complex With An Inhibitor
6-Hydroxy- 3-(3-Methyl-Benzyl)-1h-Indazole-5-Carboxylic
Acid Benzyl-Methyl-Amide
Length = 229
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 143 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 198
Query: 135 LVRQH 139
+V++H
Sbjct: 199 IVKKH 203
>pdb|2K5B|A Chain A, Human Cdc37-Hsp90 Docking Model Based On Nmr
Length = 210
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 137 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 192
Query: 135 LVRQH 139
+V++H
Sbjct: 193 IVKKH 197
>pdb|3BM9|A Chain A, Discovery Of Benzisoxazoles As Potent Inhibitors Of
Chaperone Hsp90
pdb|3BMY|A Chain A, Discovery Of Benzisoxazoles As Potent Inhibitors Of
Chaperone Hsp90
pdb|3QTF|A Chain A, Design And Sar Of Macrocyclic Hsp90 Inhibitors With
Increased Metabolic Stability And Potent
Cell-Proliferation Activity
pdb|3R91|A Chain A, Macrocyclic Lactams As Potent Hsp90 Inhibitors With
Excellent Tumor Exposure And Extended Biomarker
Activity.
pdb|3R92|A Chain A, Discovery Of A Macrocyclic O-Aminobenzamide Hsp90
Inhibitor With Heterocyclic Tether That Shows Extended
Biomarker Activity And In Vivo Efficacy In A Mouse
Xenograft Model.
pdb|3RKZ|A Chain A, Discovery Of A Stable Macrocyclic O-Aminobenzamide Hsp90
Inhibitor Capable Of Significantly Decreasing Tumor
Volume In A Mouse Xenograft Model
Length = 226
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 140 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 195
Query: 135 LVRQH 139
+V++H
Sbjct: 196 IVKKH 200
>pdb|3B24|A Chain A, Hsp90 Alpha N-Terminal Domain In Complex With An
Aminotriazine Fragment Molecule
pdb|3B24|B Chain B, Hsp90 Alpha N-Terminal Domain In Complex With An
Aminotriazine Fragment Molecule
pdb|3B25|A Chain A, Hsp90 Alpha N-Terminal Domain In Complex With An Inhibitor
Ch4675194
pdb|3B26|A Chain A, Hsp90 Alpha N-Terminal Domain In Complex With An Inhibitor
Ro1127850
pdb|3B26|B Chain B, Hsp90 Alpha N-Terminal Domain In Complex With An Inhibitor
Ro1127850
pdb|3B27|A Chain A, Hsp90 Alpha N-Terminal Domain In Complex With An Inhibitor
Ro4919127
pdb|3B28|A Chain A, Hsp90 Alpha N-Terminal Domain In Complex With An Inhibitor
Ch5015765
pdb|3B28|B Chain B, Hsp90 Alpha N-Terminal Domain In Complex With An Inhibitor
Ch5015765
pdb|3VHA|A Chain A, Hsp90 Alpha N-Terminal Domain In Complex With A
Macrocyclic Inhibitor
pdb|3VHC|A Chain A, Hsp90 Alpha N-Terminal Domain In Complex With A
Macrocyclic Inhibitor
pdb|3VHD|A Chain A, Hsp90 Alpha N-Terminal Domain In Complex With A
Macrocyclic Inhibitor, Ch5164840
pdb|3VHD|B Chain B, Hsp90 Alpha N-Terminal Domain In Complex With A
Macrocyclic Inhibitor, Ch5164840
Length = 229
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 143 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 198
Query: 135 LVRQH 139
+V++H
Sbjct: 199 IVKKH 203
>pdb|3INW|A Chain A, Hsp90 N-Terminal Domain With Pochoxime A
pdb|3INX|A Chain A, Hsp90 N-Terminal Domain With Pochoxime B
Length = 228
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 142 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 197
Query: 135 LVRQH 139
+V++H
Sbjct: 198 IVKKH 202
>pdb|3K98|A Chain A, Hsp90 N-Terminal Domain In Complex With
(1r)-2-(5-Chloro-2,
4-Dihydroxybenzoyl)-N-Ethylisoindoline-1-Carboxamide
pdb|3K98|B Chain B, Hsp90 N-Terminal Domain In Complex With
(1r)-2-(5-Chloro-2,
4-Dihydroxybenzoyl)-N-Ethylisoindoline-1-Carboxamide
pdb|3K99|A Chain A, Hsp90 N-Terminal Domain In Complex With 4-(1,3-Dihydro-2h-
Isoindol-2-Ylcarbonyl)benzene-1,3-Diol
pdb|3K99|B Chain B, Hsp90 N-Terminal Domain In Complex With 4-(1,3-Dihydro-2h-
Isoindol-2-Ylcarbonyl)benzene-1,3-Diol
pdb|3K99|C Chain C, Hsp90 N-Terminal Domain In Complex With 4-(1,3-Dihydro-2h-
Isoindol-2-Ylcarbonyl)benzene-1,3-Diol
pdb|3K99|D Chain D, Hsp90 N-Terminal Domain In Complex With 4-(1,3-Dihydro-2h-
Isoindol-2-Ylcarbonyl)benzene-1,3-Diol
Length = 232
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 143 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 198
Query: 135 LVRQH 139
+V++H
Sbjct: 199 IVKKH 203
>pdb|3EKO|A Chain A, Dihydroxylphenyl Amides As Inhibitors Of The Hsp90
Molecular Chaperone
pdb|3EKO|B Chain B, Dihydroxylphenyl Amides As Inhibitors Of The Hsp90
Molecular Chaperone
pdb|3EKR|A Chain A, Dihydroxylphenyl Amides As Inhibitors Of The Hsp90
Molecular Chaperone
pdb|3EKR|B Chain B, Dihydroxylphenyl Amides As Inhibitors Of The Hsp90
Molecular Chaperone
pdb|3HEK|A Chain A, Hsp90 N-Terminal Domain In Complex With 1-{4-[(2r)-1-(5-
Chloro-2,4-Dihydroxybenzoyl)pyrrolidin-2-Yl]benzyl}-3,3-
Difluoropyrrolidinium
pdb|3HEK|B Chain B, Hsp90 N-Terminal Domain In Complex With 1-{4-[(2r)-1-(5-
Chloro-2,4-Dihydroxybenzoyl)pyrrolidin-2-Yl]benzyl}-3,3-
Difluoropyrrolidinium
pdb|3R4N|A Chain A, Optimization Of Potent, Selective, And Orally Bioavailable
Pyrrolodinopyrimidine-Containing Inhibitors Of Heat
Shock Protein 90. Identification Of Development
Candidate 2-Amino-4-{4-Chloro-2-[2-(4-
Fluoro-1h-Pyrazol-1-Yl)ethoxy]-6-Methylphenyl}-N-(2,2-
Difluoropropyl)-5,7-Dihydro-6h-Pyrrolo[3,
4-D]pyrimidine-6-Carboxamide
pdb|3R4N|B Chain B, Optimization Of Potent, Selective, And Orally Bioavailable
Pyrrolodinopyrimidine-Containing Inhibitors Of Heat
Shock Protein 90. Identification Of Development
Candidate 2-Amino-4-{4-Chloro-2-[2-(4-
Fluoro-1h-Pyrazol-1-Yl)ethoxy]-6-Methylphenyl}-N-(2,2-
Difluoropropyl)-5,7-Dihydro-6h-Pyrrolo[3,
4-D]pyrimidine-6-Carboxamide
pdb|3R4O|A Chain A, Optimization Of Potent, Selective, And Orally Bioavailable
Pyrrolodinopyrimidine-Containing Inhibitors Of Heat
Shock Protein 90. Identification Of Development
Candidate 2-Amino-4-{4-Chloro-2-[2-(4-
Fluoro-1h-Pyrazol-1-Yl)ethoxy]-6-Methylphenyl}-N-(2,2-
Difluoropropyl)-5,7-Dihydro-6h-Pyrrolo[3,
4-D]pyrimidine-6-Carboxamide
pdb|3R4O|B Chain B, Optimization Of Potent, Selective, And Orally Bioavailable
Pyrrolodinopyrimidine-Containing Inhibitors Of Heat
Shock Protein 90. Identification Of Development
Candidate 2-Amino-4-{4-Chloro-2-[2-(4-
Fluoro-1h-Pyrazol-1-Yl)ethoxy]-6-Methylphenyl}-N-(2,2-
Difluoropropyl)-5,7-Dihydro-6h-Pyrrolo[3,
4-D]pyrimidine-6-Carboxamide
pdb|3R4P|A Chain A, Optimization Of Potent, Selective, And Orally Bioavailable
Pyrrolodinopyrimidine-Containing Inhibitors Of Heat
Shock Protein 90. Identification Of Development
Candidate 2-Amino-4-{4-Chloro-2-[2-(4-
Fluoro-1h-Pyrazol-1-Yl)ethoxy]-6-Methylphenyl}-N-(2,2-
Difluoropropyl)-5,7-Dihydro-6h-Pyrrolo[3,
4-D]pyrimidine-6-Carboxamide
pdb|3R4P|B Chain B, Optimization Of Potent, Selective, And Orally Bioavailable
Pyrrolodinopyrimidine-Containing Inhibitors Of Heat
Shock Protein 90. Identification Of Development
Candidate 2-Amino-4-{4-Chloro-2-[2-(4-
Fluoro-1h-Pyrazol-1-Yl)ethoxy]-6-Methylphenyl}-N-(2,2-
Difluoropropyl)-5,7-Dihydro-6h-Pyrrolo[3,
4-D]pyrimidine-6-Carboxamide
pdb|3RLP|A Chain A, Co-Crystal Structure Of The Hsp90 Atp Binding Domain In
Complex With
4-(2,
4-Dichloro-5-Methoxyphenyl)-6-Methylpyrimidin-2-Amine
pdb|3RLP|B Chain B, Co-Crystal Structure Of The Hsp90 Atp Binding Domain In
Complex With
4-(2,
4-Dichloro-5-Methoxyphenyl)-6-Methylpyrimidin-2-Amine
pdb|3RLQ|A Chain A, Co-Crystal Structure Of The Hsp90 Atp Binding Domain In
Complex With
4-(2,4-Dichloro-5-Methoxyphenyl)-2-Methyl-7h-Pyrrolo[2,
3- D]pyrimidine-5- Carbonitrile
pdb|3RLQ|B Chain B, Co-Crystal Structure Of The Hsp90 Atp Binding Domain In
Complex With
4-(2,4-Dichloro-5-Methoxyphenyl)-2-Methyl-7h-Pyrrolo[2,
3- D]pyrimidine-5- Carbonitrile
pdb|3RLR|A Chain A, Co-Crystal Structure Of The Hsp90 Atp Binding Domain In
Complex With
4-(2,4-Dichloro-5-Methoxyphenyl)-2,
6-Dimethyl-7h-Pyrrolo[2,3- D]pyrimidine-5-Carbonitrile
pdb|3RLR|B Chain B, Co-Crystal Structure Of The Hsp90 Atp Binding Domain In
Complex With
4-(2,4-Dichloro-5-Methoxyphenyl)-2,
6-Dimethyl-7h-Pyrrolo[2,3- D]pyrimidine-5-Carbonitrile
Length = 226
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 143 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 198
Query: 135 LVRQH 139
+V++H
Sbjct: 199 IVKKH 203
>pdb|3K97|A Chain A, Hsp90 N-Terminal Domain In Complex With
4-Chloro-6-{[(2r)-2-
(2-Methylphenyl)pyrrolidin-1-Yl]carbonyl}benzene-1,
3-Diol
Length = 251
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 165 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 220
Query: 135 LVRQH 139
+V++H
Sbjct: 221 IVKKH 225
>pdb|1OSF|A Chain A, Human Hsp90 In Complex With 17-desmethoxy-17-n,n-
Dimethylaminoethylamino-geldanamycin
Length = 215
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 142 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 197
Query: 135 LVRQH 139
+V++H
Sbjct: 198 IVKKH 202
>pdb|1BYQ|A Chain A, Hsp90 N-Terminal Domain Bound To Adp-Mg
pdb|1YER|A Chain A, Human Hsp90 Geldanamycin-Binding Domain, "closed"
Conformation
pdb|1YES|A Chain A, Human Hsp90 Geldanamycin-Binding Domain, "open"
Conformation
pdb|1YET|A Chain A, Geldanamycin Bound To The Hsp90 Geldanamycin-Binding
Domain
Length = 228
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 142 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 197
Query: 135 LVRQH 139
+V++H
Sbjct: 198 IVKKH 202
>pdb|3R4M|A Chain A, Optimization Of Potent, Selective, And Orally Bioavailable
Pyrrolodinopyrimidine-Containing Inhibitors Of Heat
Shock Protein 90. Identification Of Development
Candidate 2-Amino-4-{4-Chloro-2-[2-(4-
Fluoro-1h-Pyrazol-1-Yl)ethoxy]-6-Methylphenyl}-N-(2,2-
Difluoropropyl)-5,7-Dihydro-6h-Pyrrolo[3,
4-D]pyrimidine-6-Carboxamide
pdb|3T0H|A Chain A, Structure Insights Into Mechanisms Of Atp Hydrolysis And
The Activation Of Human Hsp90
pdb|3T0Z|A Chain A, Hsp90 N-Terminal Domain Bound To Atp
pdb|3T10|A Chain A, Hsp90 N-Terminal Domain Bound To Acp
pdb|3T1K|A Chain A, Hsp90 N-Terminal Domain Bound To Anp
pdb|3T1K|B Chain B, Hsp90 N-Terminal Domain Bound To Anp
pdb|3T2S|A Chain A, Hsp90 N-Terminal Domain Bound To Ags
pdb|3T2S|B Chain B, Hsp90 N-Terminal Domain Bound To Ags
Length = 228
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 142 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 197
Query: 135 LVRQH 139
+V++H
Sbjct: 198 IVKKH 202
>pdb|2YE2|A Chain A, Hsp90 Inhibitors And Drugs From Fragment And Virtual
Screening
pdb|2YE3|A Chain A, Hsp90 Inhibitors And Drugs From Fragment And Virtual
Screening
pdb|2YE4|A Chain A, Hsp90 Inhibitors And Drugs From Fragment And Virtual
Screening
pdb|2YE5|A Chain A, Hsp90 Inhibitors And Drugs From Fragment And Virtual
Screening
pdb|2YE6|A Chain A, Hsp90 Inhibitors And Drugs From Fragment And Virtual
Screening
pdb|2YE9|A Chain A, Hsp90 Inhibitors And Drugs From Fragment And Virtual
Screening
pdb|2YEA|A Chain A, Hsp90 Inhibitors And Drugs From Fragment And Virtual
Screening
pdb|2YEB|A Chain A, Hsp90 Inhibitors And Drugs From Fragment And Virtual
Screening
pdb|2YEC|A Chain A, Hsp90 Inhibitors And Drugs From Fragment And Virtual
Screening
pdb|2YED|A Chain A, Hsp90 Inhibitors And Drugs From Fragment And Virtual
Screening
pdb|2YEF|A Chain A, Hsp90 Inhibitors And Drugs From Fragment And Virtual
Screening
pdb|2YEG|A Chain A, Hsp90 Inhibitors And Drugs From Fragment And Virtual
Screening
pdb|2YEG|B Chain B, Hsp90 Inhibitors And Drugs From Fragment And Virtual
Screening
pdb|2YEH|A Chain A, Hsp90 Inhibitors And Drugs From Fragment And Virtual
Screening
Length = 252
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 166 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 221
Query: 135 LVRQH 139
+V++H
Sbjct: 222 IVKKH 226
>pdb|2YE7|A Chain A, Hsp90 Inhibitors And Drugs From Fragment And Virtual
Screening
pdb|2YE8|A Chain A, Hsp90 Inhibitors And Drugs From Fragment And Virtual
Screening
pdb|2YEI|A Chain A, Hsp90 Inhibitors And Drugs From Fragment And Virtual
Screening
pdb|2YEJ|A Chain A, Hsp90 Inhibitors And Drugs From Fragment And Virtual
Screening
Length = 252
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 166 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 221
Query: 135 LVRQH 139
+V++H
Sbjct: 222 IVKKH 226
>pdb|1CJX|A Chain A, Crystal Structure Of Pseudomonas Fluorescens Hppd
pdb|1CJX|B Chain B, Crystal Structure Of Pseudomonas Fluorescens Hppd
pdb|1CJX|C Chain C, Crystal Structure Of Pseudomonas Fluorescens Hppd
pdb|1CJX|D Chain D, Crystal Structure Of Pseudomonas Fluorescens Hppd
Length = 357
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 18/71 (25%)
Query: 70 GAGKKVLTNENND----KLAHW-------------QYF-VAGSFSGITTAAITAPGERIK 111
GAG KV+ + ++ ++ +W +YF + G ++G+T+ A++AP I+
Sbjct: 153 GAGLKVIDHLTHNVYRGRMVYWANFYEKLFNFREARYFDIKGEYTGLTSKAMSAPDGMIR 212
Query: 112 CLLQIQSNETA 122
L +S++ A
Sbjct: 213 IPLNEESSKGA 223
>pdb|3QDD|A Chain A, Hsp90a N-Terminal Domain In Complex With Biib021
Length = 237
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 151 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 206
Query: 135 LVRQH 139
+V++H
Sbjct: 207 IVKKH 211
>pdb|3HHU|A Chain A, Human Heat-Shock Protein 90 (Hsp90) In Complex With {4-[3-
(2,4-Dihydroxy-5-Isopropyl-Phenyl)-5-Thioxo-
1,5-Dihydro- [1,2,4]triazol-4-Yl]-Benzyl}-Carbamic Acid
Ethyl Ester {zk 2819}
pdb|3HHU|B Chain B, Human Heat-Shock Protein 90 (Hsp90) In Complex With {4-[3-
(2,4-Dihydroxy-5-Isopropyl-Phenyl)-5-Thioxo-
1,5-Dihydro- [1,2,4]triazol-4-Yl]-Benzyl}-Carbamic Acid
Ethyl Ester {zk 2819}
Length = 224
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 150 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 205
Query: 135 LVRQH 139
+V++H
Sbjct: 206 IVKKH 210
>pdb|3D0B|A Chain A, Crystal Structure Of Benzamide
Tetrahydro-4h-Carbazol-4-One Bound To Hsp90
pdb|3MNR|P Chain P, Crystal Structure Of Benzamide Snx-1321 Bound To Hsp90
Length = 232
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 150 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 205
Query: 135 LVRQH 139
+V++H
Sbjct: 206 IVKKH 210
>pdb|2YEE|A Chain A, Hsp90 Inhibitors And Drugs From Fragment And Virtual
Screening
Length = 252
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 166 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 221
Query: 135 LVRQH 139
+V++H
Sbjct: 222 IVKKH 226
>pdb|3MBB|A Chain A, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
pdb|3MBB|B Chain B, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
Length = 514
Score = 26.6 bits (57), Expect = 5.7, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 68 GYGA-GKKVLTNENNDKLAHWQYFVAGSFSGITTAAITAPGER 109
GYGA G V+ D L H+QYF+A + G + T G R
Sbjct: 314 GYGAKGTSVILYRRPD-LLHYQYFIAADWPGGLYFSPTFAGSR 355
>pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form)
pdb|3MAD|B Chain B, Crystal Structure Of Stspl (Symmetric Form)
Length = 514
Score = 26.6 bits (57), Expect = 5.7, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 68 GYGA-GKKVLTNENNDKLAHWQYFVAGSFSGITTAAITAPGER 109
GYGA G V+ D L H+QYF+A + G + T G R
Sbjct: 314 GYGAKGTSVILYRRPD-LLHYQYFIAADWPGGLYFSPTFAGSR 355
>pdb|3C7A|A Chain A, A Structural Basis For Substrate And Stereo Selectivity In
Octopine Dehydrogenase (Odh-Nadh)
pdb|3C7D|B Chain B, A Structural Basis For Substrate And Stereo Selectivity In
Octopine Dehydrogenase (Odh-Nadh-Pyruvate)
pdb|3C7C|B Chain B, A Structural Basis For Substrate And Stereo Selectivity In
Octopine Dehydrogenase (Odh-Nadh-L-Arginine)
Length = 404
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 35/95 (36%), Gaps = 24/95 (25%)
Query: 33 DCFTKIVRNESAVGLYKGMGAPITGVAPIFALSFL--------------GYGAGKKVLTN 78
D + I N+S GL + A GVAP F +L AG +
Sbjct: 292 DLYHAITTNKSYKGLVHPVKAVDGGVAPDFGNRYLTEDIPMGMIVFKGVAIAAGVAI--- 348
Query: 79 ENNDKLAHW-------QYFVAGSFSGITTAAITAP 106
+NDKL W +Y V G+ +G A P
Sbjct: 349 PSNDKLIMWAQEKIGKEYLVDGALTGKDVATTRCP 383
>pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|B Chain B, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|C Chain C, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|D Chain D, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
Length = 514
Score = 26.6 bits (57), Expect = 5.7, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 68 GYGA-GKKVLTNENNDKLAHWQYFVAGSFSGITTAAITAPGER 109
GYGA G V+ D L H+QYF+A + G + T G R
Sbjct: 314 GYGAKGTSVILYRRPD-LLHYQYFIAADWPGGLYFSPTFAGSR 355
>pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 26.6 bits (57), Expect = 5.7, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 68 GYGA-GKKVLTNENNDKLAHWQYFVAGSFSGITTAAITAPGER 109
GYGA G V+ D L H+QYF+A + G + T G R
Sbjct: 318 GYGAKGTSVILYRRPD-LLHYQYFIAADWPGGLYFSPTFAGSR 359
>pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 26.6 bits (57), Expect = 5.7, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 68 GYGA-GKKVLTNENNDKLAHWQYFVAGSFSGITTAAITAPGER 109
GYGA G V+ D L H+QYF+A + G + T G R
Sbjct: 318 GYGAKGTSVILYRRPD-LLHYQYFIAADWPGGLYFSPTFAGSR 359
>pdb|2BSM|A Chain A, Novel, Potent Small Molecule Inhibitors Of The Molecular
Chaperone Hsp90 Discovered Through Structure-Based
Design
pdb|2BT0|A Chain A, Novel, Potent Small Molecule Inhibitors Of The Molecular
Chaperone Hsp90 Discovered Through Structure-Based
Design
pdb|2BT0|B Chain B, Novel, Potent Small Molecule Inhibitors Of The Molecular
Chaperone Hsp90 Discovered Through Structure-Based
Design
pdb|2BYH|A Chain A, 3-(5-Chloro-2,4-Dihydroxyphenyl)-Pyrazole-4-Carboxamides
As Inhibitors Of The Hsp90 Molecular Chaperone
pdb|2BYI|A Chain A, 3-(5-Chloro-2,4-Dihydroxyphenyl)-Pyrazole-4-Carboxamides
As Inhibitors Of The Hsp90 Molecular Chaperone
pdb|2BZ5|A Chain A, Structure-Based Discovery Of A New Class Of Hsp90
Inhibitors
pdb|2BZ5|B Chain B, Structure-Based Discovery Of A New Class Of Hsp90
Inhibitors
Length = 235
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 149 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 204
Query: 135 LVRQH 139
+V++H
Sbjct: 205 IVKKH 209
>pdb|1UYI|A Chain A, Human Hsp90-Alpha With
8-(2,5-Dimethoxy-Benzyl)-2-Fluoro-9-
Pent-9h-Purin-6-Ylamine
Length = 236
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 150 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 205
Query: 135 LVRQH 139
+V++H
Sbjct: 206 IVKKH 210
>pdb|1UY6|A Chain A, Human Hsp90-Alpha With
9-Butyl-8-(3,4,5-Trimethoxy-Benzyl)-9h-Purin-6-Ylamine
pdb|1UY7|A Chain A, Human Hsp90-alpha With
9-butyl-8-(4-methoxy-benzyl)-9h-purin-6-ylamine
pdb|1UY8|A Chain A, Human Hsp90-Alpha With
9-Butyl-8-(3-Trimethoxy-Benzyl)-9h-Purin-6ylamine
pdb|1UY9|A Chain A, Human Hsp90-Alpha With
8-Benzo[1,3]dioxol-,
5-Ylmethyl-9-Butyl-9h-Purin-6-Ylamine
pdb|1UYC|A Chain A, Human Hsp90-Alpha With
9-Butyl-8-(2,5-Dimethoxy-Benzyl)-9h-Purin-6-Ylamine
pdb|1UYD|A Chain A, Human Hsp90-Alpha With 9-Butyl-8-
(2-Chloro-3,4,5-Trimethoxy-Benzyl)-9h-Purin-6-Ylamine
pdb|1UYE|A Chain A, Human Hsp90-Alpha With
8-(2-Chloro-3,4,5-Trimethoxy-Benzyl)
-9-Pent-4-Ylnyl-9h-Purin-6-Ylamine
pdb|1UYF|A Chain A, Human Hsp90-Alpha With
8-(2-Chloro-3,4,5-Trimethoxy-Benzyl)
-2-Fluoro-9-Pent-4-Ylnyl-9h-Purin-6-Ylamine
pdb|1UYG|A Chain A, Human Hsp90-Alpha With
8-(2,5-Dimethoxy-Benzyl)-2-Fluoro-9h-Purin-6-Ylamine
pdb|1UYH|A Chain A, Human Hsp90-Alpha With 9-Butyl-8-
(2,5-Dimethoxy-Benzyl)-2-Fluoro-9h-Purin-6-Ylamine
pdb|1UYK|A Chain A, Human Hsp90-Alpha With
8-Benzo[1,3]dioxol-,5-Ylmethyl-9-But
Yl-2-Fluoro-9h-Purin-6-Ylamine
pdb|1UYL|A Chain A, Structure-Activity Relationships In Purine-Based Inhibitor
Binding To Hsp90 Isoforms
pdb|2UWD|A Chain A, Inhibition Of The Hsp90 Molecular Chaperone In Vitro And
In Vivo By Novel, Synthetic, Potent Resorcinylic
Pyrazole, Isoxazole Amide Analogs
pdb|2VCI|A Chain A, 4,5 Diaryl Isoxazole Hsp90 Chaperone Inhibitors: Potential
Therapeutic Agents For The Treatment Of Cancer
pdb|2VCJ|A Chain A, 4,5 Diaryl Isoxazole Hsp90 Chaperone Inhibitors: Potential
Therapeutic Agents For The Treatment Of Cancer
pdb|2WI1|A Chain A, Orally Active 2-Amino Thienopyrimidine Inhibitors Of The
Hsp90 Chaperone
pdb|2WI2|A Chain A, Orally Active 2-Amino Thienopyrimidine Inhibitors Of The
Hsp90 Chaperone
pdb|2WI2|B Chain B, Orally Active 2-Amino Thienopyrimidine Inhibitors Of The
Hsp90 Chaperone
pdb|2WI3|A Chain A, Orally Active 2-Amino Thienopyrimidine Inhibitors Of The
Hsp90 Chaperone
pdb|2WI4|A Chain A, Orally Active 2-Amino Thienopyrimidine Inhibitors Of The
Hsp90 Chaperone
pdb|2WI5|A Chain A, Orally Active 2-Amino Thienopyrimidine Inhibitors Of The
Hsp90 Chaperone
pdb|2WI6|A Chain A, Orally Active 2-Amino Thienopyrimidine Inhibitors Of The
Hsp90 Chaperone
pdb|2WI7|A Chain A, Orally Active 2-Amino Thienopyrimidine Inhibitors Of The
Hsp90 Chaperone
pdb|4FCP|A Chain A, Targetting Conserved Water Molecules: Design Of
4-Aryl-5-Cyanopyrrolo [2,3-D] Pyrimidine Hsp90
Inhibitors Using Fragment-Based Screening And
Structure-Based Optimization
pdb|4FCP|B Chain B, Targetting Conserved Water Molecules: Design Of
4-Aryl-5-Cyanopyrrolo [2,3-D] Pyrimidine Hsp90
Inhibitors Using Fragment-Based Screening And
Structure-Based Optimization
pdb|4FCQ|A Chain A, Targeting Conserved Water Molecules: Design Of 4-Aryl-5-
Cyanopyrrolo[2,3-D]pyrimidine Hsp90 Inhibitors Using
Fragment-Based Screening And Structure-Based
Optimization
pdb|4FCR|A Chain A, Targeting Conserved Water Molecules: Design Of 4-Aryl-5-
Cyanopyrrolo[2,3-D]pyrimidine Hsp90 Inhibitors Using
Fragment-Based Screening And Structure-Based
Optimization
Length = 236
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 150 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 205
Query: 135 LVRQH 139
+V++H
Sbjct: 206 IVKKH 210
>pdb|3N0S|A Chain A, Crystal Structure Of Ba2930 Mutant (H183a) In Complex With
Accoa
pdb|3N0S|D Chain D, Crystal Structure Of Ba2930 Mutant (H183a) In Complex With
Accoa
pdb|3N0S|C Chain C, Crystal Structure Of Ba2930 Mutant (H183a) In Complex With
Accoa
pdb|3N0S|B Chain B, Crystal Structure Of Ba2930 Mutant (H183a) In Complex With
Accoa
Length = 268
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 8 AFECHVPPSKLNGLVIEYNIFWSTFDCFTKIVRNESAVGLYKGMG 52
AFE H+ P++ G V+E F + +VR+ +G + G
Sbjct: 102 AFEPHITPTRAXGKVVE------CFRTYPNVVRSNHPLGSFAAWG 140
>pdb|2YI0|A Chain A, Structural Characterization Of
5-Aryl-4-(5-Substituted-2-4-
Dihydroxyphenyl)-1,2,3-Thiadiazole Hsp90 Inhibitors.
pdb|2YI5|A Chain A, Structural Characterization Of
5-Aryl-4-(5-Substituted-2-4-
Dihydroxyphenyl)-1,2,3-Thiadiazole Hsp90 Inhibitors.
pdb|2YI6|A Chain A, Structural Characterization Of 5-Aryl-4-(5-Substituted-2-
4-Dihydroxyphenyl)-1,2,3-Thiadiazole Hsp90 Inhibitors.
pdb|2YI7|A Chain A, Structural Characterization Of
5-Aryl-4-(5-Substituted-2-4-
Dihydroxyphenyl)-1,2,3-Thiadiazole Hsp90 Inhibitors
Length = 229
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 150 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 205
Query: 135 LVRQH 139
+V++H
Sbjct: 206 IVKKH 210
>pdb|3IJW|A Chain A, Crystal Structure Of Ba2930 In Complex With Coa
pdb|3IJW|B Chain B, Crystal Structure Of Ba2930 In Complex With Coa
pdb|3SLF|A Chain A, Crystal Structure Of Ba2930 In Complex With Accoa And
Uracil
pdb|3SLF|B Chain B, Crystal Structure Of Ba2930 In Complex With Accoa And
Uracil
Length = 268
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 8 AFECHVPPSKLNGLVIEYNIFWSTFDCFTKIVRNESAVGLYKGMG 52
AFE H+ P++ G V+E F + +VR+ +G + G
Sbjct: 102 AFEPHITPTRAXGKVVE------CFRTYPNVVRSNHPLGSFAAWG 140
>pdb|2HGJ|K Chain K, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
Showing How The 16s 3'-End Mimicks Mrna E And P Codons.
This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgi.
pdb|2HGQ|K Chain K, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
With Translocated And Rotated Shine-Dalgarno Duplex.
This Entry 2hgq Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgp.
pdb|2HGU|K Chain K, 70s T.Th. Ribosome Functional Complex With Mrna And E- And
P-Site Trnas At 4.5a. This Entry 2hgu Contains 50s
Ribosomal Subunit. The 30s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgr
Length = 148
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 17/98 (17%)
Query: 55 ITGVAPIFALSFLGYGAGKKVLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLL 114
+ V P +A ++L G VL E+N K + A A ER+K +L
Sbjct: 18 VVDVKPGYARNYL-LPRGLAVLATESNLKALEARIRAQAK----RLAERKAEAERLKKIL 72
Query: 115 Q-------IQSNETAKVYSGPV---DVVRKLVRQHGVT 142
+ +++ ET K+Y G V D+ L RQHGVT
Sbjct: 73 ENLTLTIPVRAGET-KIY-GSVTAKDIAEALSRQHGVT 108
>pdb|3E4F|A Chain A, Crystal Structure Of Ba2930- A Putative Aminoglycoside N3-
Acetyltransferase From Bacillus Anthracis
pdb|3E4F|B Chain B, Crystal Structure Of Ba2930- A Putative Aminoglycoside N3-
Acetyltransferase From Bacillus Anthracis
Length = 265
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 8 AFECHVPPSKLNGLVIEYNIFWSTFDCFTKIVRNESAVGLYKGMG 52
AFE H+ P++ G V+E F + +VR+ +G + G
Sbjct: 99 AFEPHITPTRAXGKVVE------CFRTYPNVVRSNHPLGSFAAWG 137
>pdb|2CCS|A Chain A, Human Hsp90 With
4-Chloro-6-(4-Piperazin-1-Yl-1h-Pyrazol-3-
Yl)-Benzene-1,2-Diol
pdb|2CCT|A Chain A, Human Hsp90 With 5-(5-Chloro-2,4-Dihydroxy-Phenyl)-4-
Piperazin-1-Yl-2h-Pyrazole-3-Carboxylic Acid Ethylamide
pdb|2CCU|A Chain A, Human Hsp90 With 4-Chloro-6-(4-(4-(4-Methanesulphonyl-
Benzyl)-Pierazin-1-Yl)-1h-Pyrazol-3-Yl)-Benzene-1,3-Diol
Length = 236
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 VLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRK 134
V+T N+D+ W+ GSF+ + T G K +L ++ ++T + +++
Sbjct: 150 VITKHNDDEQYAWESSAGGSFT-VRTDTGEPMGRGTKVILHLKEDQTEYLEERR---IKE 205
Query: 135 LVRQH 139
+V++H
Sbjct: 206 IVKKH 210
>pdb|3KZL|A Chain A, Crystal Structure Of Ba2930 Mutant (H183g) In Complex With
Accoa
pdb|3KZL|D Chain D, Crystal Structure Of Ba2930 Mutant (H183g) In Complex With
Accoa
pdb|3KZL|C Chain C, Crystal Structure Of Ba2930 Mutant (H183g) In Complex With
Accoa
pdb|3KZL|B Chain B, Crystal Structure Of Ba2930 Mutant (H183g) In Complex With
Accoa
pdb|3N0M|A Chain A, Crystal Structure Of Ba2930 Mutant (H183g) In Complex With
Accoa
pdb|3N0M|B Chain B, Crystal Structure Of Ba2930 Mutant (H183g) In Complex With
Accoa
pdb|3SLB|A Chain A, Crystal Structure Of Ba2930 In Complex With Accoa And
Cytosine
pdb|3SLB|D Chain D, Crystal Structure Of Ba2930 In Complex With Accoa And
Cytosine
pdb|3SLB|C Chain C, Crystal Structure Of Ba2930 In Complex With Accoa And
Cytosine
pdb|3SLB|B Chain B, Crystal Structure Of Ba2930 In Complex With Accoa And
Cytosine
Length = 268
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 8 AFECHVPPSKLNGLVIEYNIFWSTFDCFTKIVRNESAVGLYKGMG 52
AFE H+ P++ G V+E F + +VR+ +G + G
Sbjct: 102 AFEPHITPTRAXGKVVE------CFRTYPNVVRSNHPLGSFAAWG 140
>pdb|2PS2|A Chain A, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Aspergillus Oryzae
pdb|2PS2|B Chain B, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Aspergillus Oryzae
pdb|2PS2|C Chain C, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Aspergillus Oryzae
pdb|2PS2|D Chain D, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Aspergillus Oryzae
Length = 371
Score = 25.8 bits (55), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 94 SFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDV 131
+F+ I A T P ++C+L+ + T K G D+
Sbjct: 304 AFAAIVHLAQTIPERSLRCILECRDMVTVKTADGAFDI 341
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,372,237
Number of Sequences: 62578
Number of extensions: 169013
Number of successful extensions: 344
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 332
Number of HSP's gapped (non-prelim): 59
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)