Query psy13131
Match_columns 148
No_of_seqs 105 out of 1232
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 20:22:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13131.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13131hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 1.3E-32 4.5E-37 198.7 7.6 139 7-148 116-261 (303)
2 1okc_A ADP, ATP carrier protei 100.0 3.7E-32 1.3E-36 195.8 7.0 140 7-148 124-273 (297)
3 1okc_A ADP, ATP carrier protei 100.0 3.5E-31 1.2E-35 190.6 8.5 141 8-148 20-176 (297)
4 2lck_A Mitochondrial uncouplin 100.0 2E-31 7E-36 192.4 6.3 141 7-148 13-167 (303)
5 2acm_A Mucin-1; auto-catalytic 63.0 1.6 5.6E-05 23.0 0.1 22 28-49 39-60 (66)
6 1y9i_A Low temperature require 19.1 1.5E+02 0.0053 19.3 3.8 42 60-101 111-157 (178)
7 1yro_A Alpha-lactalbumin; Arg2 12.7 1.2E+02 0.0042 18.4 2.0 16 128-143 88-103 (123)
8 1iiz_A Lysozyme; hydrolase; 2. 12.6 1.3E+02 0.0043 18.2 2.1 16 128-143 87-102 (120)
9 2bnk_A Early protein GP16.7; D 12.3 1.9E+02 0.0064 15.0 2.6 48 100-148 18-65 (67)
10 2fbd_A Lysozyme 1; digestive l 12.0 1.3E+02 0.0045 18.2 2.0 16 128-143 89-104 (122)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.97 E-value=1.3e-32 Score=198.66 Aligned_cols=139 Identities=18% Similarity=0.214 Sum_probs=123.2
Q ss_pred ccceeecCccchhhhhhccc-------CCCCHHHHHHHHHHhcCcceeccccchhhhcchhHHHHHHHhHHHHHHhhhcc
Q psy13131 7 VAFECHVPPSKLNGLVIEYN-------IFWSTFDCFTKIVRNESAVGLYKGMGAPITGVAPIFALSFLGYGAGKKVLTNE 79 (148)
Q Consensus 7 v~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
+.+.++..|.|+.|+++|.+ +|+++++++++|+++||++|||||+.|+++++++..+++|.+||.+|+.+.+.
T Consensus 116 ~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~ 195 (303)
T 2lck_A 116 ALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKA 195 (303)
T ss_dssp HHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34456677888888888743 58999999999999999999999999999999999999999999999988764
Q ss_pred CCCCcchHHHHHHHHHHHHhhhhhcCcHHHHHHHHhhccCCCCccCCCHHHHHHHHHHhhCcccccccC
Q psy13131 80 NNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRKLVRQHGVTSVFKAR 148 (148)
Q Consensus 80 ~~~~~~~~~~~~~~~~a~~~~~~~~~P~~~ik~r~q~~~~~~~~~~~~~~~~~~~i~~~~G~~gl~~G~ 148 (148)
...+.+....+++|++++++++++++|+|+||+|+|++.. ..|.++++|+++|+++||++|||||+
T Consensus 196 ~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~---~~y~~~~~~~~~i~~~eG~~glyrG~ 261 (303)
T 2lck_A 196 NLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL---GQYHSAGHCALTMLRKEGPRAFYKGF 261 (303)
T ss_dssp TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS---SSCCSHHHHHHHHHHSSCTHHHHSCC
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc---cccCCHHHHHHHHHHHcChHHhhccH
Confidence 4345567788999999999999999999999999999753 46999999999999999999999996
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.97 E-value=3.7e-32 Score=195.79 Aligned_cols=140 Identities=21% Similarity=0.364 Sum_probs=120.7
Q ss_pred ccceeecCccchhhhhhccc--------CCCCHHHHHHHHHHhcCcceeccccchhhhcchhHHHHHHHhHHHHHHhhhc
Q psy13131 7 VAFECHVPPSKLNGLVIEYN--------IFWSTFDCFTKIVRNESAVGLYKGMGAPITGVAPIFALSFLGYGAGKKVLTN 78 (148)
Q Consensus 7 v~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
+.+.++..|.|+.|+++|.+ +|+++++++++++++||++|||||+.|+++++++..+++|.+||.+|+.+.+
T Consensus 124 ~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~ 203 (297)
T 1okc_A 124 ATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD 203 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCG
T ss_pred HHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33455667777778787742 5889999999999999999999999999999999999999999999997754
Q ss_pred cCCCCcchHHHHHHHHHHHHhhhhhcCcHHHHHHHHhhccC--CCCccCCCHHHHHHHHHHhhCcccccccC
Q psy13131 79 ENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSN--ETAKVYSGPVDVVRKLVRQHGVTSVFKAR 148 (148)
Q Consensus 79 ~~~~~~~~~~~~~~~~~a~~~~~~~~~P~~~ik~r~q~~~~--~~~~~~~~~~~~~~~i~~~~G~~gl~~G~ 148 (148)
.. ..+....+++|.+++++++++++|+|+||+|+|++.. ..+..|+++++|+++|+++||++|||||+
T Consensus 204 ~~--~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~ 273 (297)
T 1okc_A 204 PK--NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGA 273 (297)
T ss_dssp GG--CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTH
T ss_pred CC--CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecch
Confidence 32 3456778899999999999999999999999998754 22347999999999999999999999995
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.97 E-value=3.5e-31 Score=190.65 Aligned_cols=141 Identities=15% Similarity=0.263 Sum_probs=118.6
Q ss_pred cceeecCccchhhhhhccc----------CCCCHHHHHHHHHHhcCcceeccccchhhhcchhHHHHHHHhHHHHHHhhh
Q psy13131 8 AFECHVPPSKLNGLVIEYN----------IFWSTFDCFTKIVRNESAVGLYKGMGAPITGVAPIFALSFLGYGAGKKVLT 77 (148)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (148)
.+.++.+|.|+.|+++|.+ +|+++++++++++++||++|||||+.++++++++..+++|.+||.+|+.+.
T Consensus 20 ~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~ 99 (297)
T 1okc_A 20 ISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFL 99 (297)
T ss_dssp HHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445667777777787742 589999999999999999999999999999999999999999999999543
Q ss_pred ccCCCC----cchHHHHHHHHHHHHhhhhhcCcHHHHHHHHhhccC--CCCccCCCHHHHHHHHHHhhCcccccccC
Q psy13131 78 NENNDK----LAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSN--ETAKVYSGPVDVVRKLVRQHGVTSVFKAR 148 (148)
Q Consensus 78 ~~~~~~----~~~~~~~~~~~~a~~~~~~~~~P~~~ik~r~q~~~~--~~~~~~~~~~~~~~~i~~~~G~~gl~~G~ 148 (148)
+..... .+....+++|+++++++.++++|+|+||+|+|++.. .....|++.++++++|+++||++|||||+
T Consensus 100 ~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~ 176 (297)
T 1okc_A 100 GGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGF 176 (297)
T ss_dssp TTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTH
T ss_pred cccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCc
Confidence 322111 134668899999999999999999999999999753 22457899999999999999999999995
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.97 E-value=2e-31 Score=192.45 Aligned_cols=141 Identities=18% Similarity=0.299 Sum_probs=123.2
Q ss_pred ccceeecCccchhhhhhccc-------------CCCCHHHHHHHHHHhcCcceeccccchhhhcchhHHHHHHHhHHHHH
Q psy13131 7 VAFECHVPPSKLNGLVIEYN-------------IFWSTFDCFTKIVRNESAVGLYKGMGAPITGVAPIFALSFLGYGAGK 73 (148)
Q Consensus 7 v~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~ 73 (148)
+.+.++.+|.|+.|+++|.+ +|+++++++++++++||++|||||+.+++++.++..+++|.+||.+|
T Consensus 13 ~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k 92 (303)
T 2lck_A 13 CIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVK 92 (303)
T ss_dssp HHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777888888743 58899999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCCcchHHHHHHHHHHHHhhhhhcCcHHHHHHHHhhccC-CCCccCCCHHHHHHHHHHhhCcccccccC
Q psy13131 74 KVLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSN-ETAKVYSGPVDVVRKLVRQHGVTSVFKAR 148 (148)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~P~~~ik~r~q~~~~-~~~~~~~~~~~~~~~i~~~~G~~gl~~G~ 148 (148)
+.+.+... ..+....+++|+++++++.++++|+|+||+|+|++.. .....|++.++++++|+++||++|||||+
T Consensus 93 ~~~~~~~~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~ 167 (303)
T 2lck_A 93 QFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGT 167 (303)
T ss_dssp HHHSCCCS-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHhcCCc-CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCc
Confidence 98875422 4667889999999999999999999999999999864 23457899999999999999999999994
No 5
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=63.02 E-value=1.6 Score=23.01 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHhcCcceecc
Q psy13131 28 FWSTFDCFTKIVRNESAVGLYK 49 (148)
Q Consensus 28 ~~~~~~~~~~i~~~~G~~gly~ 49 (148)
.+++.+.+.+||+++++.||+.
T Consensus 39 qr~is~L~lqIykq~~FLgl~~ 60 (66)
T 2acm_A 39 QRDISEMFLQIYKQGGFLGLSN 60 (66)
T ss_dssp HHHHHHHHHHHCTTTTEEEEEE
T ss_pred HHHHHHHHHHHHccCCeeeeeE
Confidence 3567889999999999999863
No 6
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=19.09 E-value=1.5e+02 Score=19.26 Aligned_cols=42 Identities=7% Similarity=-0.110 Sum_probs=26.5
Q ss_pred hHHHHHHHhHHHHHHhhhcc-----CCCCcchHHHHHHHHHHHHhhh
Q psy13131 60 PIFALSFLGYGAGKKVLTNE-----NNDKLAHWQYFVAGSFSGITTA 101 (148)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~a~~~~~ 101 (148)
....+.|..+|..|...-+. ...-......+++|+.|++++.
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~ 157 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASR 157 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHH
Confidence 46677888899888654321 1122356677888877776553
No 7
>1yro_A Alpha-lactalbumin; Arg228Lys mutation, UDP-GAL complex, transferase activator/transferase complex; HET: GDU UDP MES PG4; 1.90A {Mus musculus} SCOP: d.2.1.2 PDB: 1nhe_A* 1nkh_A* 1nmm_A* 1nqi_A* 1nwg_A* 1o23_A* 1oqm_A* 1pzy_A* 1nf5_A* 2fyc_A* 2fyd_A*
Probab=12.66 E-value=1.2e+02 Score=18.36 Aligned_cols=16 Identities=13% Similarity=0.389 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhhCccc
Q psy13131 128 PVDVVRKLVRQHGVTS 143 (148)
Q Consensus 128 ~~~~~~~i~~~~G~~g 143 (148)
...|+++|++++|+..
T Consensus 88 ~i~CAk~I~~~~G~~a 103 (123)
T 1yro_A 88 DIACAKKILAIKGIDY 103 (123)
T ss_dssp HHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHhcCcch
Confidence 4678999999988764
No 8
>1iiz_A Lysozyme; hydrolase; 2.40A {Antheraea mylitta} SCOP: d.2.1.2 PDB: 1gd6_A
Probab=12.65 E-value=1.3e+02 Score=18.20 Aligned_cols=16 Identities=6% Similarity=0.231 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhCccc
Q psy13131 128 PVDVVRKLVRQHGVTS 143 (148)
Q Consensus 128 ~~~~~~~i~~~~G~~g 143 (148)
...|+++|++++|+..
T Consensus 87 ~v~CAk~I~~~~G~~a 102 (120)
T 1iiz_A 87 ASTCAKKIYKRTKFDA 102 (120)
T ss_dssp HHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhcCcch
Confidence 4678899999888754
No 9
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=12.28 E-value=1.9e+02 Score=15.05 Aligned_cols=48 Identities=13% Similarity=0.214 Sum_probs=29.5
Q ss_pred hhhhcCcHHHHHHHHhhccCCCCccCCCHHHHHHHHHHhhCcccccccC
Q psy13131 100 TAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRKLVRQHGVTSVFKAR 148 (148)
Q Consensus 100 ~~~~~~P~~~ik~r~q~~~~~~~~~~~~~~~~~~~i~~~~G~~gl~~G~ 148 (148)
.+-+--|.|+|--.. .+.-..+..--.+.+.-+.-|+=|.-+-+|||.
T Consensus 18 ~SnIrIP~DIIEdl~-~~~L~te~EVmnYiEnqR~~WKLEN~KKly~g~ 65 (67)
T 2bnk_A 18 QSNIRIPSDIIEDLV-NQRLQSEQEVLNYIETQRTYWKLENQKKLYRGS 65 (67)
T ss_dssp HTTCCCCHHHHHHHH-TTCCCCSHHHHHHHHHHHHHHHHHTTSCCCCSC
T ss_pred HcCCcCcHHHHHHHH-HHhhhhHHHHHHHHHhhHhHHhhhhhHHHHhcc
Confidence 344667888887544 222112223334566677788888888888884
No 10
>2fbd_A Lysozyme 1; digestive lysozime, hydrolase; HET: PEG; 1.90A {Musca domestica} PDB: 2h5z_A* 3cb7_A
Probab=11.97 E-value=1.3e+02 Score=18.17 Aligned_cols=16 Identities=38% Similarity=0.505 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhCccc
Q psy13131 128 PVDVVRKLVRQHGVTS 143 (148)
Q Consensus 128 ~~~~~~~i~~~~G~~g 143 (148)
...|+++|++++|+..
T Consensus 89 ~i~CAk~I~~~~G~~a 104 (122)
T 2fbd_A 89 SVTCARKIKSQQGWTA 104 (122)
T ss_dssp HHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHhcCCcc
Confidence 4678999999988764
Done!