RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13131
(148 letters)
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 62.3 bits (152), Expect = 1e-13
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 87 WQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRKLVRQHGVTSVFK 146
+AG +G A +T P + +K LQ + ++ Y G +D +K+ ++ G+ ++K
Sbjct: 6 LASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGLYK 65
Score = 52.3 bits (126), Expect = 7e-10
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 28 FWSTFDCFTKIVRNESAVGLYKGMGAPITGVAPIFALSFLGYGAGKKVLTNEN 80
+ DCF KI + E GLYKG+ + VAP A+ F Y KK+L +
Sbjct: 44 YKGILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKKLLLKKL 96
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 49.0 bits (117), Expect = 1e-07
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 28 FWSTFDCFTKIVRNESAVGLYKGMGAPITGVAPIFALSFLGYGAGKKVLTNENNDKLAHW 87
F FDC KI + + LY+G G + G+ F Y + K +L + + +
Sbjct: 153 FTGLFDCLMKISKQTGFLSLYQGFGVSVQGIIVYRGAYFGLYDSAKALLFGNDKNTNILY 212
Query: 88 QYFVAGSFSGITTAA--ITAPGERIKCLLQIQSNETAK---VYSGPVDVVRKLVRQHGVT 142
++ VA + +T A I+ P + ++ + + S AK Y+G +D +K+++ G+
Sbjct: 213 KWAVAQT---VTILAGLISYPFDTVRRRMMMMSGRKAKSEIQYTGTLDCWKKILKNEGLG 269
Query: 143 SVFK 146
FK
Sbjct: 270 GFFK 273
Score = 37.1 bits (86), Expect = 0.001
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 90 FVAGSFSGITTAAITAPGERIKCLLQIQ-SNETAKV-----YSGPVDVVRKLVRQHGVTS 143
F+ G S + AP ER+K L+Q Q S K YSG V+ R++ ++ GV S
Sbjct: 11 FLMGGISAAISKTAVAPIERVKMLIQTQDSIPEIKSGKVPRYSGIVNCFRRVSKEQGVLS 70
Query: 144 VFK 146
+++
Sbjct: 71 LWR 73
Score = 31.7 bits (72), Expect = 0.12
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 30 STFDCFTKIVRNESAVGLYKG 50
T DC+ KI++NE G +KG
Sbjct: 254 GTLDCWKKILKNEGLGGFFKG 274
Score = 29.4 bits (66), Expect = 0.61
Identities = 31/141 (21%), Positives = 61/141 (43%), Gaps = 17/141 (12%)
Query: 15 PSKLNGLVIEYNIFWSTFDCFTKIVRNESAVGLYKGMGAPITGVAPIFALSFLGYGAGK- 73
P +G V Y+ +CF ++ + + + L++G A + P A +F A K
Sbjct: 42 PEIKSGKVPRYS---GIVNCFRRVSKEQGVLSLWRGNTANVIRYFPTQAFNF----AFKD 94
Query: 74 --KVLTNENNDKLAHWQYFVA----GSFSGITTAAITAPGE--RIKCLLQIQSNETAKVY 125
K + + N K W++F G +G ++ I P + R + I + +
Sbjct: 95 YFKNMFPKYNQKTDFWKFFGVNILSGGLAGASSLLIVYPLDFARTRLASDIGKGGD-REF 153
Query: 126 SGPVDVVRKLVRQHGVTSVFK 146
+G D + K+ +Q G S+++
Sbjct: 154 TGLFDCLMKISKQTGFLSLYQ 174
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
Length = 259
Score = 32.6 bits (74), Expect = 0.049
Identities = 20/73 (27%), Positives = 32/73 (43%)
Query: 47 LYKGMGAPITGVAPIFALSFLGYGAGKKVLTNENNDKLAHWQYFVAGSFSGITTAAITAP 106
LY G+ + G P A + Y KK+LT + Y ++ S + IT + P
Sbjct: 45 LYSGILPTLVGTVPASAFFYCFYELSKKLLTEYRENISKTNLYLISTSIAEITACIVRLP 104
Query: 107 GERIKCLLQIQSN 119
E +K +Q+ N
Sbjct: 105 FEIVKQNMQVSGN 117
Score = 26.8 bits (59), Expect = 5.1
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 84 LAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSN----ETAKVYSG 127
+ H+ V G+ SG+ A+ P + IK +Q + + + K+YSG
Sbjct: 1 MEHFHNLVTGALSGVIVDAVLYPIDSIKTNIQAKKSFSFSDIKKLYSG 48
>gnl|CDD|237707 PRK14410, PRK14410, membrane protein; Provisional.
Length = 235
Score = 28.6 bits (64), Expect = 1.0
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 41 NESAVGLYKGMGAPITGVAPIFALSFLGYGAGKKVLT 77
NE A+ L GM A I V +FA G+ GK V T
Sbjct: 88 NEVALRLLAGMSAVIGHVFTVFA----GFKGGKGVST 120
>gnl|CDD|216167 pfam00875, DNA_photolyase, DNA photolyase. This domain binds a
light harvesting cofactor.
Length = 164
Score = 28.3 bits (64), Expect = 1.0
Identities = 7/23 (30%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 124 VYSG-PVDVVRKLVRQHGVTSVF 145
V G P +V+ +L ++ G ++V+
Sbjct: 71 VRRGDPAEVLPELAKELGASAVY 93
>gnl|CDD|236586 PRK09605, PRK09605, bifunctional UGMP family
protein/serine/threonine protein kinase; Validated.
Length = 535
Score = 27.9 bits (63), Expect = 1.9
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 12/52 (23%)
Query: 79 ENNDKLAHWQYFVAG---SFSGITTAAITA-----PGERIKCLLQIQSNETA 122
++ K Y V G SFSG+ TAA A P E + LQ ETA
Sbjct: 182 KDGKKYIDLPYVVKGMDFSFSGLLTAAKRAYDAGEPLEDVCYSLQ----ETA 229
>gnl|CDD|182510 PRK10514, PRK10514, putative acetyltransferase; Provisional.
Length = 145
Score = 27.3 bits (61), Expect = 2.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 41 NESAVGLYKGMGAPITGVAP 60
NE AVG YK MG +TG +
Sbjct: 109 NEQAVGFYKKMGFKVTGRSE 128
>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase;
Validated.
Length = 633
Score = 27.3 bits (61), Expect = 3.9
Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Query: 122 AKVYSGPVDVVRKLVRQHGV 141
A V++ P+ VR+L R+ GV
Sbjct: 326 AYVHATPL--VRRLAREFGV 343
>gnl|CDD|206249 pfam14079, DUF4260, Domain of unknown function (DUF4260). This
family of integral membrane proteins is functionally
uncharacterized. This family of proteins is found in
bacteria. Proteins in this family are typically between
114 and 126 amino acids in length. There is a conserved
GLK sequence motif.
Length = 114
Score = 26.1 bits (58), Expect = 5.5
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 44 AVGLYKGMGAPITGVAPIF---ALSFLGYGAGKKV 75
A+ Y +G A + LS LGY AG ++
Sbjct: 16 ALVFYAWLGFSWWLFALLLLVPDLSMLGYLAGPRI 50
>gnl|CDD|234329 TIGR03722, arch_KAE1, universal archaeal protein Kae1. This family
represents the archaeal protein Kae1. Its partner Bud32
is fused with it in about half of the known archaeal
genomes. The pair, which appears universal in the
archaea, corresponds to EKC/KEOPS complex in eukaryotes.
A recent characterization of the member from Pyrococcus
abyssi, as an iron-binding, atypical DNA-binding protein
with an apurinic lyase activity, challenges the common
annotation of close homologs as O-sialoglycoprotein
endopeptidase. The latter annotation is based on a
characterized protein from the bacterium Pasteurella
haemolytica [DNA metabolism, DNA replication,
recombination, and repair].
Length = 322
Score = 26.5 bits (59), Expect = 6.5
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 79 ENNDKLAHWQYFVAG---SFSGITTAAITA 105
E + Y V G SFSG+ TAA+ A
Sbjct: 179 EKGKEYIELPYTVKGMDLSFSGLLTAALRA 208
>gnl|CDD|184878 PRK14878, PRK14878, UGMP family protein; Provisional.
Length = 323
Score = 26.4 bits (59), Expect = 6.9
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 79 ENNDKLAHWQYFVAG---SFSGITTAAITAPGERIK 111
E +K Y V G SFSG+ TAA+ + +
Sbjct: 178 EKGEKYIELPYVVKGQDLSFSGLLTAALRLYKGKER 213
>gnl|CDD|220202 pfam09359, VTC, VTC domain. This presumed domain is found in the
yeast vacuolar transport chaperone proteins VTC2, VTC3
and VTC4. This domain is also found in a variety of
bacterial proteins.
Length = 239
Score = 26.2 bits (58), Expect = 7.1
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 58 VAPIFALSFLGYGAGKKVLTNENNDKLAHW-QYFV 91
+ + FLG K+ E N KLA+ QYF+
Sbjct: 101 LKEKYVNDFLGGELNAKLREIEKNKKLANEIQYFI 135
>gnl|CDD|216946 pfam02247, Como_LCP, Large coat protein. This family contains the
large coat protein (LCP) of the comoviridae viral
family.
Length = 351
Score = 25.9 bits (57), Expect = 9.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 68 GYGAGKKVLTNENNDKLAHWQYFVA 92
G GA K +L N N ++ W+YF
Sbjct: 201 GAGAKKAILMNMPNAYISLWRYFRG 225
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.416
Gapped
Lambda K H
0.267 0.0761 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,383,744
Number of extensions: 653898
Number of successful extensions: 605
Number of sequences better than 10.0: 1
Number of HSP's gapped: 603
Number of HSP's successfully gapped: 26
Length of query: 148
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 60
Effective length of database: 7,034,450
Effective search space: 422067000
Effective search space used: 422067000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.5 bits)