RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13131
(148 letters)
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 81.2 bits (201), Expect = 2e-19
Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 2/118 (1%)
Query: 30 STFDCFTKIVRNESAVGLYKGMGAPITGVAPIFALSFLGYGAGKKVLTNENNDKLAHWQY 89
+VR E LY G+ A + ++ Y + K+ T ++
Sbjct: 49 GVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTK-GSEHAGIGSR 107
Query: 90 FVAGSFSGITTAAITAPGERIKCLLQIQSN-ETAKVYSGPVDVVRKLVRQHGVTSVFK 146
+AGS +G A+ P + +K Q Q+ + Y V+ + + R+ G+ ++K
Sbjct: 108 LLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWK 165
Score = 68.1 bits (167), Expect = 1e-14
Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 3/117 (2%)
Query: 30 STFDCFTKIVRNESAVGLYKGMGAPITGVAPIFALSFLGYGAGKKVLTNENNDKLAHWQY 89
ST + + I R E GL+KG + A + + Y K L N +
Sbjct: 146 STVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCH 205
Query: 90 FVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRKLVRQHGVTSVFK 146
F + +G T I +P + +K N Y ++R+ G + +K
Sbjct: 206 FTSAFGAGFCTTVIASPVDVVKTRYM---NSALGQYHSAGHCALTMLRKEGPRAFYK 259
Score = 40.0 bits (94), Expect = 9e-05
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
Query: 90 FVAGSFSGITTAAITAPGERIKCLLQIQ-------SNETAKVYSGPVDVVRKLVRQHGVT 142
F+ + IT P + K LQIQ + Y G + + +VR G
Sbjct: 5 FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPR 64
Query: 143 SVFK 146
S++
Sbjct: 65 SLYN 68
Score = 39.6 bits (93), Expect = 1e-04
Identities = 11/54 (20%), Positives = 18/54 (33%)
Query: 30 STFDCFTKIVRNESAVGLYKGMGAPITGVAPIFALSFLGYGAGKKVLTNENNDK 83
S C ++R E YKG + + F+ Y K+ L +
Sbjct: 240 SAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSR 293
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 75.8 bits (187), Expect = 2e-17
Identities = 22/123 (17%), Positives = 50/123 (40%), Gaps = 6/123 (4%)
Query: 30 STFDCFTKIVRNESAVGLYKGMGAPITGVAPIFALSFLGYGAGKKVLTNENNDKLAHWQY 89
DC +I + + + ++G A + P AL+F K++ + W+Y
Sbjct: 52 GIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRY 111
Query: 90 F----VAGSFSGITTAAITAPGERIKCLLQIQSNETAK--VYSGPVDVVRKLVRQHGVTS 143
F +G +G T+ P + + L + A ++G + + K+ + G+
Sbjct: 112 FAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRG 171
Query: 144 VFK 146
+++
Sbjct: 172 LYQ 174
Score = 73.8 bits (182), Expect = 1e-16
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 4/117 (3%)
Query: 32 FDCFTKIVRNESAVGLYKGMGAPITGVAPIFALSFLGYGAGKKVLTNENNDKLAHWQYFV 91
+C TKI +++ GLY+G + G+ A F Y K +L + N + ++
Sbjct: 157 GNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKN--VHIIVSWM 214
Query: 92 AGSFSGITTAAITAPGERIKCLLQIQS--NETAKVYSGPVDVVRKLVRQHGVTSVFK 146
++ P + ++ + +QS +Y+G VD RK+ + G + FK
Sbjct: 215 IAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFK 271
Score = 57.7 bits (140), Expect = 6e-11
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 80 NNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQ----SNETAKVYSGPVDVVRKL 135
++ L+ + F+AG + + AP ER+K LLQ+Q K Y G +D V ++
Sbjct: 1 SDQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRI 60
Query: 136 VRQHGVTSVFK 146
++ G S ++
Sbjct: 61 PKEQGFLSFWR 71
Score = 43.8 bits (104), Expect = 4e-06
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 16 SKLNGLVIEYNIFWSTFDCFTKIVRNESAVGLYKGMGAPITGVAPIFALSFLGYGAGKKV 75
S G I Y T DC+ KI ++E +KG + + A + Y KK
Sbjct: 241 SGRKGADIMYT---GTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGG-AFVLVLYDEIKKF 296
Query: 76 L 76
+
Sbjct: 297 V 297
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 1e-05
Identities = 20/132 (15%), Positives = 38/132 (28%), Gaps = 49/132 (37%)
Query: 10 ECHVPPSKLNGLVIEYNIFWSTFDCFTKI------VRNESAVGLYKGMGAPITGVAPIFA 63
E N + +YN+ S + K+ +R V + G+
Sbjct: 114 EQRDRLYNDNQVFAKYNV--SRLQPYLKLRQALLELRPAKNVLID-GVL----------- 159
Query: 64 LSFLGYGAGKKVLTNE--NNDKL-------AHWQYFVAGSFSGITTAAITAPGERIKCL- 113
G+GK + + + K+ W + +P ++ L
Sbjct: 160 ------GSGKTWVALDVCLSYKVQCKMDFKIFW----------LNLKNCNSPETVLEMLQ 203
Query: 114 ---LQIQSNETA 122
QI N T+
Sbjct: 204 KLLYQIDPNWTS 215
Score = 30.2 bits (67), Expect = 0.30
Identities = 25/161 (15%), Positives = 43/161 (26%), Gaps = 68/161 (42%)
Query: 19 NGLVIEYNI----FWSTFD--CFTKIV---RNESAV------------------GLYK-- 49
N L++ N+ W+ F+ C KI+ R + L
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSC--KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 50 ---------GMGA---P--ITGVAPIFALSFLGYGAGKKVLTNENNDKLAHWQYFVAGSF 95
P + P LS + + D LA W + +
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNP-RRLSIIA--ESIR-------DGLATWDNWKHVNC 352
Query: 96 SGITTAAITAPGERIK-CLLQIQSNETAKVYSG----PVDV 131
+TT I+ L ++ E K++ P
Sbjct: 353 DKLTTI--------IESSLNVLEPAEYRKMFDRLSVFPPSA 385
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.004
Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 20/108 (18%)
Query: 40 RNESAVGLYKGMGAPITG-VAPIF---ALSFLGYGAGKKVLTNEN----NDKLAHWQYFV 91
R+E Y GM A G VA F AL ++ GK+ T N + + QY
Sbjct: 1799 RDELGRSNY-GMIAINPGRVAASFSQEALQYVVERVGKR--TGWLVEIVNYNVENQQYVA 1855
Query: 92 AGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRKLVRQH 139
AG A+ + +++Q + ++ + + V H
Sbjct: 1856 AG-----DLRALDTVTNVLN-FIKLQKIDIIEL---QKSLSLEEVEGH 1894
Score = 28.5 bits (63), Expect = 0.90
Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 18/106 (16%)
Query: 53 APITGVAP-IFALSFLGYGAGKKVLTNENNDKLAHWQYFVAGSFSGITTAAITAPG---- 107
PI+ P I + Y K+L +L + G G+ TA A
Sbjct: 234 IPISC--PLIGVIQLAHYVVTAKLL-GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 108 -------ERIKCLLQI--QSNETAKVYSGPVDVVRKLVRQ-HGVTS 143
+ I L I + E S P ++ + GV S
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein,
flavoprotein, FAD, mitochondrion, plastid, chromophore,
chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana}
PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Length = 525
Score = 29.9 bits (68), Expect = 0.25
Identities = 7/23 (30%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 124 VYSG-PVDVVRKLVRQHGVTSVF 145
+ SG P +++ L + G +VF
Sbjct: 118 IRSGKPEEILPSLAKDFGARTVF 140
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag,
phosphorylation, gene regulation, signaling protein;
HET: TPO FAD; 2.30A {Drosophila melanogaster}
Length = 538
Score = 29.9 bits (68), Expect = 0.29
Identities = 6/23 (26%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 124 VYSG-PVDVVRKLVRQHGVTSVF 145
V+ G P + R+L Q + +
Sbjct: 82 VFEGEPAYIFRRLHEQVRLHRIC 104
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A
{Arabidopsis thaliana}
Length = 537
Score = 29.6 bits (67), Expect = 0.39
Identities = 5/23 (21%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 124 VYSG-PVDVVRKLVRQHGVTSVF 145
V+ G P +V+ + +++ V +
Sbjct: 86 VFKGEPGEVLVRCLQEWKVKRLC 108
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.41
Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 9/29 (31%)
Query: 37 KIVRNESAVGLYKGMGAPITGVAPIFALS 65
K+ ++++ LY AP A+
Sbjct: 24 KL---QASLKLYA----D--DSAPALAIK 43
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET:
TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A*
2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Length = 543
Score = 29.2 bits (66), Expect = 0.45
Identities = 5/23 (21%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 124 VYSG-PVDVVRKLVRQHGVTSVF 145
V G P +V ++ + V +
Sbjct: 107 VVRGKPAEVFPRIFKSWRVEMLT 129
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.9 bits (64), Expect = 0.59
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 2 IPSKGVAFECHVPPSKLNGLVIEYNIFWSTFDCFTK 37
+P + F + N V E N + +D +K
Sbjct: 178 LPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISK 213
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A
{Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Length = 489
Score = 28.7 bits (65), Expect = 0.64
Identities = 5/23 (21%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 124 VYSG-PVDVVRKLVRQHGVTSVF 145
V +G P V+ ++ +Q +++
Sbjct: 83 VTTGLPEQVIPQIAKQINAKTIY 105
>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid
dehydrogenase complex,...; protein-protein interaction,
redox protein; HET: FAD NHE; 2.40A {Homo sapiens} PDB:
1zwv_A
Length = 58
Score = 26.4 bits (59), Expect = 0.85
Identities = 5/22 (22%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
Query: 120 ETAKVYSGPVDVVRKLVRQHGV 141
+ K + P VR L ++ +
Sbjct: 4 KGRKTLATPA--VRNLAMENNI 23
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein,
nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A
{Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB:
1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Length = 420
Score = 28.2 bits (64), Expect = 1.1
Identities = 6/23 (26%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 124 VYSG-PVDVVRKLVRQHGVTSVF 145
V G P + V + R+ +V+
Sbjct: 70 VLEGLPWEKVPEAARRLKAKAVY 92
>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto
acid dehydrogenase...; E3_binding domain; NMR {Homo
sapiens}
Length = 70
Score = 26.6 bits (59), Expect = 1.2
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 117 QSNETAKVYSGPVDVVRKLVRQHGV 141
Q + K + P VR+L ++ +
Sbjct: 9 QEIKGRKTLATPA--VRRLAMENNI 31
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein;
HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP:
a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Length = 509
Score = 27.9 bits (63), Expect = 1.3
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 128 PVDVVRKLVRQHGVTSVF 145
V + +V+ G + +F
Sbjct: 89 SVASLLDVVKSTGASQIF 106
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy
transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA
FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1
c.28.1.1
Length = 471
Score = 27.9 bits (63), Expect = 1.3
Identities = 5/25 (20%), Positives = 14/25 (56%)
Query: 121 TAKVYSGPVDVVRKLVRQHGVTSVF 145
+ V++V+++ ++ VT +F
Sbjct: 76 EVDDFVASVEIVKQVCAENSVTHLF 100
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin
enzyme, photoreactivating enzyme; HET: FAD; 1.80A
{Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB:
1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Length = 484
Score = 27.9 bits (63), Expect = 1.4
Identities = 5/23 (21%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 124 VYSG-PVDVVRKLVRQHGVTSVF 145
+ G P ++ +L +Q +V+
Sbjct: 75 LLQGDPQHLIPQLAQQLQAEAVY 97
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 26.6 bits (59), Expect = 1.8
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 14 PPSKLNGLVIEYNIFWSTFD 33
P + NG++ Y I W ++
Sbjct: 40 EPGEKNGILTGYRISWEEYN 59
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 26.3 bits (58), Expect = 3.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 14 PPSKLNGLVIEYNIFWSTFD 33
PPS+ NG + Y I++ST
Sbjct: 130 PPSEANGKITGYIIYYSTDV 149
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 26.5 bits (58), Expect = 3.7
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 12 HVPPSKLNGLVIEYNIFWSTFD 33
+P NG + Y IF+ T
Sbjct: 518 QLPVDVQNGFIRNYTIFYRTII 539
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 25.5 bits (56), Expect = 3.9
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 14 PPSKLNGLVIEYNIFWSTFD 33
PP +GL+ EY + +S
Sbjct: 32 PPIHTHGLIREYIVEYSRSG 51
>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of
pyruvate; dehydrogenase, multienzyme complex,
oxidoreductase; HET: TDP; 2.0A {Geobacillus
stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A
1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*
Length = 49
Score = 24.4 bits (54), Expect = 4.0
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 118 SNETAKVYSGPVDVVRKLVRQHGV 141
+ +V + P VRK R+ GV
Sbjct: 1 AGPNRRVIAMPS--VRKYAREKGV 22
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 25.4 bits (56), Expect = 4.3
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 14 PPSKLNGLVIEYNIFWSTFD 33
PP + NG + Y +F++
Sbjct: 33 PPLEANGKITAYILFYTLDK 52
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated
oncogenes (CDON)binding...; fibronectin type III, FN3;
NMR {Mus musculus} SCOP: b.1.2.1
Length = 114
Score = 25.5 bits (56), Expect = 4.8
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 12 HVPPSKLNGLVIEYNIFWSTFD 33
++P S N + + I++ D
Sbjct: 31 YIPASNNNTPIHGFYIYYRPTD 52
>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding
domain, ultrafast folding, homologues,; NMR {Pyrobaculum
aerophilum} PDB: 1w4j_A 1w4k_A
Length = 62
Score = 24.2 bits (53), Expect = 6.0
Identities = 5/20 (25%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 122 AKVYSGPVDVVRKLVRQHGV 141
+V + P R+L ++ G+
Sbjct: 3 REVAAMPA--ARRLAKELGI 20
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 25.0 bits (55), Expect = 6.4
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 12 HVPPSKLNGLVIEYNIFWSTFD 33
++P S N + + I++ D
Sbjct: 27 YIPSSNNNTPIQGFYIYYRPTD 48
>4e0a_A BH1408 protein; structural genomics, PSI-biology, protein structure
initiati northeast structural genomics consortium, NESG,
transferase; 1.80A {Bacillus halodurans} PDB: 4f6a_A*
Length = 164
Score = 25.4 bits (56), Expect = 6.8
Identities = 6/29 (20%), Positives = 9/29 (31%), Gaps = 6/29 (20%)
Query: 25 YNIFWSTFDCFTKIVRNESAVGLYKGMGA 53
I +D N+ A Y +G
Sbjct: 123 DAIELDVYDF------NDRAKAFYHSLGM 145
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 25.7 bits (55), Expect = 7.1
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 14 PPSKLNGLVIEYNIFWS 30
P + + V Y +FWS
Sbjct: 294 LPEEPDIPVHHYKVFWS 310
>2o5n_A MUHV1GPM153; mouse cytomegalovirus, MHC-I-like, M145 family, MHC-IV
superfamily, alpha-beta protein, viral protein; HET: NAG
BMA NDG; 2.40A {Murid herpesvirus 1}
Length = 319
Score = 25.4 bits (54), Expect = 8.4
Identities = 14/74 (18%), Positives = 21/74 (28%), Gaps = 6/74 (8%)
Query: 21 LVIEYNIFWSTFDCFTKIVRNESAVGLYKGMGAPITGVAPIFA------LSFLGYGAGKK 74
LV+EY F+C + + G I V + L G
Sbjct: 95 LVVEYRCPVPQFNCTITHRWKGETIMSFDGAIQTIRSVTSEYTTKNEDTLVKYIRGLNVT 154
Query: 75 VLTNENNDKLAHWQ 88
+LT+ W
Sbjct: 155 LLTDNAKSIEHRWT 168
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 24.6 bits (54), Expect = 9.3
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 14 PPSKLNGLVIEYNIFWSTFD 33
P + NG+++EY I + D
Sbjct: 33 EPEQPNGIILEYEIKYYEKD 52
>2dlh_A Receptor-type tyrosine-protein phosphatase delta;
protein-tyrosine phosphatase delta, R-PTP-delta,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 24.7 bits (54), Expect = 9.8
Identities = 4/18 (22%), Positives = 10/18 (55%)
Query: 14 PPSKLNGLVIEYNIFWST 31
P + NG + Y ++++
Sbjct: 41 EPEEPNGQIQGYRVYYTM 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.416
Gapped
Lambda K H
0.267 0.0706 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,230,464
Number of extensions: 122561
Number of successful extensions: 279
Number of sequences better than 10.0: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 49
Length of query: 148
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 63
Effective length of database: 4,328,508
Effective search space: 272696004
Effective search space used: 272696004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)